Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007276
(1919 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus]. 1110 0.0
Alignment gi|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos t... 79 1e-14
Alignment gi|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial prec... 77 5e-14
Alignment gi|XP_001789065.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 68 3e-11
>ref|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus].
Length = 623
Score = 1110 bits (2872), Expect = 0.0
Identities = 550/601 (91%), Positives = 560/601 (93%)
Frame = +3
Query: 6 RLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXXXXXXXXX 185
RLVRGSLRQTSWAQWGQRE RL QLAPFTTIHKDK LSD
Sbjct: 8 RLVRGSLRQTSWAQWGQREPRLCQLAPFTTIHKDKALSDKRSELKRRLKAEKKIAEKEAK 67
Query: 186 XXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKF 365
SEKQLSQ ++GVAAEEESLDPNQYFKIRSQA+HQLKV+GEDPYPHKF
Sbjct: 68 QKELSEKQLSQAAASNHSA--EDGVAAEEESLDPNQYFKIRSQAIHQLKVNGEDPYPHKF 125
Query: 366 HVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMAN 545
HVDISLTHFI+EYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMAN
Sbjct: 126 HVDISLTHFIQEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMAN 185
Query: 546 SRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFG 725
SRNYKSEEEF+RINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFG
Sbjct: 186 SRNYKSEEEFIRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFG 245
Query: 726 LKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAV 905
LKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAV
Sbjct: 246 LKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAV 305
Query: 906 AKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCE 1085
AKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCE
Sbjct: 306 AKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCE 365
Query: 1086 FYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEE 1265
FYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDG EGQAYEIDFTPPFRKISMVEE
Sbjct: 366 FYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGSEGQAYEIDFTPPFRKISMVEE 425
Query: 1266 LEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINP 1445
LEKALGMKLP+TNLFETEETR+ILDDICVAK VECPPPRTTARLLDKLVGEFLEVTCINP
Sbjct: 426 LEKALGMKLPETNLFETEETRRILDDICVAKDVECPPPRTTARLLDKLVGEFLEVTCINP 485
Query: 1446 TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAK 1625
TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAK
Sbjct: 486 TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAK 545
Query: 1626 AAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKK 1805
AAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDKK
Sbjct: 546 AAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKK 605
Query: 1806 E 1808
E
Sbjct: 606 E 606
>ref|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 501
Score = 79.0 bits (193), Expect = 1e-14
Identities = 104/484 (21%), Positives = 197/484 (40%), Gaps = 33/484 (6%)
Frame = +3
Query: 429 LTDITLKVAG-------RIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRIN 587
++D+T++ AG R+H RA G K F LR + +Q + ++ S++ V+
Sbjct: 48 ISDLTVQKAGEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFA 105
Query: 588 NKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD------- 734
+ + I+ V+G K + S ++ L ++++ P L L D
Sbjct: 106 ANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVE 165
Query: 735 ----------KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMN 884
++TR R +DL + + F ++S I R L GF+EI+TP +
Sbjct: 166 GEEEGRATVNQDTRLDNRVIDLRTSTS-QAIFRLQSGICHPFRETLTNKGFVEIQTPKII 224
Query: 885 IIPGGAVAKPF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-T 1058
A F ++Y N Y+ +P+LY +M + ++V+ IG FR E +
Sbjct: 225 SAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHR 281
Query: 1059 HNPEFTTCEFYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTP 1235
H EF + MA+ YH+++E + + K + ++ + F
Sbjct: 282 HLTEFVGLDIEMAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLE 341
Query: 1236 PFRKISMVEELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKL 1409
P ++ E L + G+++ D T K+L + K T +LDK
Sbjct: 342 PTLRLEYCEALAMLREAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY 394
Query: 1410 VGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVR 1589
+ P + P+ + +++F+ +EI + ++DP
Sbjct: 395 ------PLAVRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP-- 435
Query: 1590 QRQLFEEQAKAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEV 1769
QL E+A ++ + + + +G PP G G+G++RVTM +N+++
Sbjct: 436 --QLVTERALHHGIDLEKI----KAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQT 489
Query: 1770 LLFP 1781
+FP
Sbjct: 490 SMFP 493
>ref|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 651
Score = 77.0 bits (188), Expect = 5e-14
Identities = 81/315 (25%), Positives = 145/315 (46%), Gaps = 17/315 (5%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQK 797
Q NP K GE+ I LL+ C + + +K ET R + RYLDL + ++
Sbjct: 126 QKNP-KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFMKKTETLRLQYRYLDL-RSVQMQYN 183
Query: 798 FIIRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 971
+RS+++ +R +L L GF+++ETP + PGGA K F+ E + +P+
Sbjct: 184 LRLRSQMVMKMREYLCNLHGFVDVETPTLFKRTPGGA--KEFVIPSREPGKFYSLPQSPQ 241
Query: 972 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGM 1151
+ ++L+VGG+DR +++ R +R+EG PEFT + M++ D + + ++ G+
Sbjct: 242 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGV----QSLIEGL 297
Query: 1152 VKHITGSYK---VTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPD-TNLFETE 1319
+++ S K V P P +A T ++ + GMK+ D +++F
Sbjct: 298 LQYSWPSDKDPLVVPFPSMPFAEALASYGT---------DKPDTRFGMKIVDISDMFRNT 348
Query: 1320 ETRKILD----------DICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQ 1469
E + D IC+ K + + + F E + P F+ +
Sbjct: 349 EVGFLQDALSKPQGTVKAICIRKGAKYLKRKDIESIRKFAADHFNEE--VLPIFLKTNEN 406
Query: 1470 IMSPLAKWHRSKEGL 1514
SP+AK+ ++GL
Sbjct: 407 WNSPVAKFIMEEQGL 421
>ref|XP_001789065.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Bos taurus].
Length = 456
Score = 67.8 bits (164), Expect = 3e-11
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 3/177 (1%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQK 797
Q NP K GE+ I LL+ C + + +K ET R + RYLDL + ++
Sbjct: 126 QKNP-KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFMKKTETLRLQYRYLDL-RSVQMQYN 183
Query: 798 FIIRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 971
+RS+++ +R +L L GF+++ETP + PGGA K F+ E + +P+
Sbjct: 184 LRLRSQMVMKMREYLCNLHGFVDVETPTLFKRTPGGA--KEFVIPSREPGKFYSLPQSPQ 241
Query: 972 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1142
+ ++GG+DR +++ R +R+EG PEFT + M++ D + + E ++
Sbjct: 242 QFKPPHMLGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGVQSLIEGLL 298
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 74,170,774
Number of extensions: 2045511
Number of successful extensions: 6399
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6395
Number of HSP's successfully gapped: 4
Length of query: 639
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 530
Effective length of database: 14,074,782
Effective search space: 7459634460
Effective search space used: 7459634460
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007276
(1919 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 1101 0.0
Alignment gi|XP_850403.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 1101 0.0
Alignment gi|XP_536777.2| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 1038 0.0
Alignment gi|XP_861414.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 937 0.0
Alignment gi|XP_861505.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 843 0.0
Alignment gi|XP_861471.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 843 0.0
Alignment gi|XP_861443.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 834 0.0
Alignment gi|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 80 5e-15
Alignment gi|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase ... 77 4e-14
Alignment gi|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase ... 73 8e-13
>ref|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 625
Score = 1101 bits (2848), Expect = 0.0
Identities = 538/602 (89%), Positives = 556/602 (92%)
Frame = +3
Query: 3 VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXXXXXXXX 182
VRLVRG+LRQTSWA+WGQRELRL QLAPFT +HKDKPLSD
Sbjct: 7 VRLVRGALRQTSWARWGQRELRLCQLAPFTALHKDKPLSDKRSELKRRLKAEKKIAEKEA 66
Query: 183 XXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK 362
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHK
Sbjct: 67 KQKELSEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHK 126
Query: 363 FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 542
FHVDISLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA
Sbjct: 127 FHVDISLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 186
Query: 543 NSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 722
NSRNYKSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF
Sbjct: 187 NSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 246
Query: 723 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 902
GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGA
Sbjct: 247 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGA 306
Query: 903 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 1082
VAKPFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC
Sbjct: 307 VAKPFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 366
Query: 1083 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
EFYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVE
Sbjct: 367 EFYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVE 426
Query: 1263 ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 1442
ELEKALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCIN
Sbjct: 427 ELEKALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCIN 486
Query: 1443 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 1622
PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA
Sbjct: 487 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 546
Query: 1623 KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDK 1802
KAAGDDEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDK
Sbjct: 547 KAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDK 606
Query: 1803 KE 1808
K+
Sbjct: 607 KD 608
>ref|XP_850403.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 625
Score = 1101 bits (2848), Expect = 0.0
Identities = 538/602 (89%), Positives = 556/602 (92%)
Frame = +3
Query: 3 VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXXXXXXXX 182
VRLVRG+LRQTSWA+WGQRELRL QLAPFT +HKDKPLSD
Sbjct: 7 VRLVRGALRQTSWARWGQRELRLCQLAPFTALHKDKPLSDKRSELKRRLKAEKKIAEKEA 66
Query: 183 XXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK 362
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHK
Sbjct: 67 KQKELSEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHK 126
Query: 363 FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 542
FHVDISLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA
Sbjct: 127 FHVDISLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 186
Query: 543 NSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 722
NSRNYKSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF
Sbjct: 187 NSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 246
Query: 723 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 902
GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGA
Sbjct: 247 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGA 306
Query: 903 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 1082
VAKPFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC
Sbjct: 307 VAKPFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 366
Query: 1083 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
EFYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVE
Sbjct: 367 EFYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVE 426
Query: 1263 ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 1442
ELEKALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCIN
Sbjct: 427 ELEKALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCIN 486
Query: 1443 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 1622
PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA
Sbjct: 487 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 546
Query: 1623 KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDK 1802
KAAGDDEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDK
Sbjct: 547 KAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDK 606
Query: 1803 KE 1808
K+
Sbjct: 607 KD 608
>ref|XP_536777.2| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 1 [Canis familiaris].
Length = 597
Score = 1038 bits (2684), Expect = 0.0
Identities = 503/537 (93%), Positives = 518/537 (96%)
Frame = +3
Query: 198 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 377
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 103
Query: 378 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 557
SLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 558 KSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 737
KSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 738 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 917
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 283
Query: 918 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1097
ITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 284 ITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 343
Query: 1098 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1277
YADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELEKA
Sbjct: 344 YADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELEKA 403
Query: 1278 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1457
LG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTFIC
Sbjct: 404 LGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTFIC 463
Query: 1458 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 1637
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD
Sbjct: 464 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 523
Query: 1638 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
DEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDKK+
Sbjct: 524 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 580
>ref|XP_861414.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 4 [Canis familiaris].
Length = 557
Score = 937 bits (2421), Expect = 0.0
Identities = 464/537 (86%), Positives = 478/537 (89%)
Frame = +3
Query: 198 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 377
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 103
Query: 378 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 557
SLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 558 KSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 737
KSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 738 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 917
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEI
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEI----------------- 266
Query: 918 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1097
LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 267 -----------------------LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 303
Query: 1098 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1277
YADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELEKA
Sbjct: 304 YADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELEKA 363
Query: 1278 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1457
LG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTFIC
Sbjct: 364 LGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTFIC 423
Query: 1458 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 1637
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD
Sbjct: 424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 483
Query: 1638 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
DEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDKK+
Sbjct: 484 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 540
>ref|XP_861505.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 7 [Canis familiaris].
Length = 441
Score = 843 bits (2178), Expect = 0.0
Identities = 406/424 (95%), Positives = 418/424 (98%)
Frame = +3
Query: 537 MANSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 716
MANSRNYKSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHL
Sbjct: 1 MANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 60
Query: 717 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPG 896
HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPG
Sbjct: 61 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPG 120
Query: 897 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 1076
GAVAKPFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFT
Sbjct: 121 GAVAKPFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 180
Query: 1077 TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISM 1256
TCEFYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISM
Sbjct: 181 TCEFYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISM 240
Query: 1257 VEELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1436
VEELEKALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TC
Sbjct: 241 VEELEKALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTC 300
Query: 1437 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1616
INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA
Sbjct: 301 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 360
Query: 1617 KAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPE 1796
KAKAAGDDEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPE
Sbjct: 361 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPE 420
Query: 1797 DKKE 1808
DKK+
Sbjct: 421 DKKD 424
>ref|XP_861471.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 6 [Canis familiaris].
Length = 441
Score = 843 bits (2178), Expect = 0.0
Identities = 406/424 (95%), Positives = 418/424 (98%)
Frame = +3
Query: 537 MANSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 716
MANSRNYKSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHL
Sbjct: 1 MANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 60
Query: 717 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPG 896
HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPG
Sbjct: 61 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPG 120
Query: 897 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 1076
GAVAKPFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFT
Sbjct: 121 GAVAKPFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 180
Query: 1077 TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISM 1256
TCEFYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISM
Sbjct: 181 TCEFYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISM 240
Query: 1257 VEELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1436
VEELEKALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TC
Sbjct: 241 VEELEKALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTC 300
Query: 1437 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1616
INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA
Sbjct: 301 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 360
Query: 1617 KAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPE 1796
KAKAAGDDEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPE
Sbjct: 361 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPE 420
Query: 1797 DKKE 1808
DKK+
Sbjct: 421 DKKD 424
>ref|XP_861443.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 5 [Canis familiaris].
Length = 437
Score = 834 bits (2154), Expect = 0.0
Identities = 401/419 (95%), Positives = 413/419 (98%)
Frame = +3
Query: 552 NYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK 731
NYKSEEEF+ INNKLRRGDIIGV+GNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK
Sbjct: 2 NYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK 61
Query: 732 DKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 911
DKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAK
Sbjct: 62 DKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 121
Query: 912 PFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFY 1091
PFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFY
Sbjct: 122 PFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFY 181
Query: 1092 MAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELE 1271
MAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELE
Sbjct: 182 MAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELE 241
Query: 1272 KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTF 1451
KALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTF
Sbjct: 242 KALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTF 301
Query: 1452 ICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAA 1631
ICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAA
Sbjct: 302 ICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAA 361
Query: 1632 GDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
GDDEAMFIDE FCTALEYGLPPT GWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDKK+
Sbjct: 362 GDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 420
>ref|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 2 [Canis familiaris].
Length = 501
Score = 80.5 bits (197), Expect = 5e-15
Identities = 103/478 (21%), Positives = 192/478 (40%), Gaps = 26/478 (5%)
Frame = +3
Query: 426 HLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRG 605
H D + V R+H RA G K F LR + +Q + ++ S++ V+ + +
Sbjct: 54 HKADEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKE 111
Query: 606 DIIGVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD------------- 734
I+ V+G K + S ++ L ++++ P L L D
Sbjct: 112 SIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEVEGEEEGR 171
Query: 735 ----KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 902
++TR R +DL + + F ++S I R L GF+EI+TP +
Sbjct: 172 ATVNQDTRLDNRVIDLRTSTS-QAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEG 230
Query: 903 VAKPF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFT 1076
A F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF
Sbjct: 231 GANVFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFV 287
Query: 1077 TCEFYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKIS 1253
+ MA+ YH+++E + + K + ++ + F P ++
Sbjct: 288 GLDIEMAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLE 347
Query: 1254 MVEELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLE 1427
E L + G+++ D T K+L + K T +LDK
Sbjct: 348 YCEALAMLREAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY------ 394
Query: 1428 VTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFE 1607
+ P + P+ + +++F+ +EI + ++DP QL
Sbjct: 395 PLAVRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLT 439
Query: 1608 EQAKAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFP 1781
E+A ++ + + + +G PP G G+G++RVTM +N+++ +FP
Sbjct: 440 ERALHHGIDLEKI----KAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFP 493
>ref|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 1 [Canis familiaris].
Length = 481
Score = 77.4 bits (189), Expect = 4e-14
Identities = 100/469 (21%), Positives = 187/469 (39%), Gaps = 17/469 (3%)
Frame = +3
Query: 426 HLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRG 605
H D + V R+H RA G K F LR + +Q + ++ S++ V+ + +
Sbjct: 54 HKADEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKE 111
Query: 606 DIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDF 785
I+ V+G K + S ++ L ++++ + L L L+D
Sbjct: 112 SIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVIS------------LAEPRLPLQLDDA 159
Query: 786 VRQK------------FIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF-ITY 926
VR + F ++S I R L GF+EI+TP + A F ++Y
Sbjct: 160 VRPEVEGEETSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSY 219
Query: 927 HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAY- 1100
N Y+ +P+LY +M + ++V+ IG FR E + H EF + MA+
Sbjct: 220 FKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 276
Query: 1101 ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELE--K 1274
YH+++E + + K + ++ + F P ++ E L +
Sbjct: 277 YHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLEYCEALAMLR 336
Query: 1275 ALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFI 1454
G+++ D T K+L + K T +LDK + P +
Sbjct: 337 EAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY------PLAVRPFYT 383
Query: 1455 CDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAG 1634
P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 384 MPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERALHHGID 428
Query: 1635 DDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFP 1781
++ + + + +G PP G G+G++RVTM +N+++ +FP
Sbjct: 429 LEKI----KAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFP 473
>ref|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase 2 (mitochondrial)
[Canis familiaris].
Length = 652
Score = 73.2 bits (178), Expect = 8e-13
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 8/182 (4%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKD--KET---RYRQRYLDLILNDF 785
Q NP K GE+ I LL+ C L F +KD K+T R + RYLDL F
Sbjct: 127 QENP-KMPTGEIEIKVKTAELLNSC----KKLPFEIKDFVKKTEALRLQYRYLDL--RSF 179
Query: 786 VRQKFI-IRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYM 956
Q + +RS+++ +R +L L GF+++ETP + PGGA K F+ E +
Sbjct: 180 QMQYNLRLRSQMVMKMREYLCNLHGFVDVETPTLFKRTPGGA--KEFVIPSREPGKFYCL 237
Query: 957 RIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEK 1136
+P+ + ++L+VGG+DR +++ R +R+EG PEFT + M++ D + + E
Sbjct: 238 PQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEG 297
Query: 1137 MV 1142
++
Sbjct: 298 LL 299
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 77,569,152
Number of extensions: 2113780
Number of successful extensions: 6905
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6893
Number of HSP's successfully gapped: 12
Length of query: 639
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 530
Effective length of database: 15,240,880
Effective search space: 8077666400
Effective search space used: 8077666400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007276
(1919 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapien... 1094 0.0
Alignment gi|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens]. 1040 0.0
Alignment gi|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sap... 82 2e-15
Alignment gi|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precurs... 74 5e-13
>ref|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapiens].
Length = 625
Score = 1094 bits (2830), Expect = 0.0
Identities = 537/602 (89%), Positives = 553/602 (91%)
Frame = +3
Query: 3 VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXXXXXXXX 182
VRLVRGSLR+TSWA+WG RELRL QLAPFT HKDK SD
Sbjct: 7 VRLVRGSLRKTSWAEWGHRELRLGQLAPFTAPHKDKSFSDQRSELKRRLKAEKKVAEKEA 66
Query: 183 XXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK 362
SEKQLSQ DNGV EEES+DPNQY+KIRSQA+HQLKV+GEDPYPHK
Sbjct: 67 KQKELSEKQLSQATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHK 126
Query: 363 FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 542
FHVDISLT FI++YSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA
Sbjct: 127 FHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 186
Query: 543 NSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 722
NSRNYKSEEEF+ INNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF
Sbjct: 187 NSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 246
Query: 723 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 902
GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGA
Sbjct: 247 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGA 306
Query: 903 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 1082
VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC
Sbjct: 307 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 366
Query: 1083 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY++DFTPPFR+I+MVE
Sbjct: 367 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVE 426
Query: 1263 ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 1442
ELEKALGMKLP+TNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN
Sbjct: 427 ELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 486
Query: 1443 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 1622
PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDP+RQRQLFEEQAKA
Sbjct: 487 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKA 546
Query: 1623 KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDK 1802
KAAGDDEAMFIDE FCTALEYGLPPT GWGMGIDRV MFLTDSNNI+EVLLFPAMKPEDK
Sbjct: 547 KAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDK 606
Query: 1803 KE 1808
KE
Sbjct: 607 KE 608
>ref|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens].
Length = 597
Score = 1040 bits (2689), Expect = 0.0
Identities = 505/537 (94%), Positives = 519/537 (96%)
Frame = +3
Query: 198 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 377
SEKQLSQ DNGV EEES+DPNQY+KIRSQA+HQLKV+GEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDI 103
Query: 378 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 557
SLT FI++YSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 558 KSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 737
KSEEEF+ INNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 164 KSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 738 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 917
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 283
Query: 918 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1097
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 284 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 343
Query: 1098 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1277
YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY++DFTPPFR+I+MVEELEKA
Sbjct: 344 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKA 403
Query: 1278 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1457
LGMKLP+TNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC
Sbjct: 404 LGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 463
Query: 1458 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 1637
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDP+RQRQLFEEQAKAKAAGD
Sbjct: 464 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGD 523
Query: 1638 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
DEAMFIDE FCTALEYGLPPT GWGMGIDRV MFLTDSNNI+EVLLFPAMKPEDKKE
Sbjct: 524 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKE 580
>ref|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 501
Score = 82.0 bits (201), Expect = 2e-15
Identities = 103/475 (21%), Positives = 192/475 (40%), Gaps = 26/475 (5%)
Frame = +3
Query: 435 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 614
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + I+
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 114
Query: 615 GVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 734
V+G K + S ++ L ++++ P L L D
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
Query: 735 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 911
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 175 NQDTRLDNRVIDLRTSTS-QAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGAN 233
Query: 912 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 1085
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 234 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGLD 290
Query: 1086 FYMAYA-DYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
MA+ YH++ME + + K + ++ + F P ++ E
Sbjct: 291 IEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYCE 350
Query: 1263 ELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1436
L + G+++ D + T K+L + K T +LDK
Sbjct: 351 ALAMLREAGVEMGDEDDLSTPN-EKLLGHLVKEKY------DTDFYILDKYP------LA 397
Query: 1437 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1616
+ P + P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 398 VRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERA 442
Query: 1617 KAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFP 1781
++ + + + +G PP G G+G++RVTM +N+++ +FP
Sbjct: 443 LHHGIDLEKI----KAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFP 493
>ref|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 645
Score = 73.9 bits (180), Expect = 5e-13
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 4/178 (2%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHL-HFGLKDKETRYRQRYLDLILNDFVRQK 797
Q NP K GE+ I LL+ C + + +F K + R + RYLDL F Q
Sbjct: 129 QENP-KMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDL--RSFQMQY 185
Query: 798 FI-IRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAP 968
+ +RS+++ +R +L L GF++IETP + PGGA K F+ E + +P
Sbjct: 186 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSP 243
Query: 969 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1142
+ + ++L+VGG+DR +++ R +R+EG PEFT + M++ D + + E ++
Sbjct: 244 QQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 301
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 76,096,843
Number of extensions: 2084508
Number of successful extensions: 6478
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6466
Number of HSP's successfully gapped: 4
Length of query: 639
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 530
Effective length of database: 14,704,088
Effective search space: 7793166640
Effective search space used: 7793166640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007276
(1919 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculu... 1087 0.0
Alignment gi|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus]. 1025 0.0
Alignment gi|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1... 1017 0.0
Alignment gi|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1... 78 2e-14
Alignment gi|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precurs... 75 2e-13
>ref|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculus].
Length = 624
Score = 1087 bits (2810), Expect = 0.0
Identities = 534/602 (88%), Positives = 556/602 (92%)
Frame = +3
Query: 3 VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXXXXXXXX 182
VRLVRG+LRQTSWA+WGQRELRL LAPFTT+HKD+PLSD
Sbjct: 7 VRLVRGALRQTSWAEWGQRELRLGHLAPFTTLHKDQPLSDRRSELKRRLKAEKKLAEKEA 66
Query: 183 XXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK 362
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHK
Sbjct: 67 KQKELSEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHK 125
Query: 363 FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 542
FHVDISLT FI+EYSHLQPGDHLTD+TLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA
Sbjct: 126 FHVDISLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 185
Query: 543 NSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 722
NSRNYKSEEEFV INNKLRRGDIIGV+GNPGKTKKGELSIIP EITLLSPCLHMLPHLHF
Sbjct: 186 NSRNYKSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHF 245
Query: 723 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 902
GLKDKETRYRQRYLDLILNDFVRQKFI+RSKIITYIRSFLD LGFLEIETPMMNIIPGGA
Sbjct: 246 GLKDKETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGA 305
Query: 903 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 1082
VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC
Sbjct: 306 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 365
Query: 1083 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
EFYMAYADYHDLMEITEKM+SGMVK ITGSYK+TYHPDGPEGQAYE+DFTPPFR+ISMVE
Sbjct: 366 EFYMAYADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVE 425
Query: 1263 ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 1442
ELEKALG+KLP+T+LFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI+
Sbjct: 426 ELEKALGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIS 485
Query: 1443 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 1622
PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA
Sbjct: 486 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 545
Query: 1623 KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDK 1802
KAAGDDEAMFIDE FCTALEYGLPPT GWGMGIDR+TMFLTDSNNI+EVLLFPAMKPEDK
Sbjct: 546 KAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDK 605
Query: 1803 KE 1808
KE
Sbjct: 606 KE 607
>ref|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus].
Length = 595
Score = 1025 bits (2650), Expect = 0.0
Identities = 500/537 (93%), Positives = 518/537 (96%)
Frame = +3
Query: 198 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 377
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDI
Sbjct: 43 SEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDI 101
Query: 378 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 557
SLT FI+EYSHLQPGDHLTD+TLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 102 SLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 161
Query: 558 KSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 737
KSEEEFV INNKLRRGDIIGV+GNPGKTKKGELSIIP EITLLSPCLHMLPHLHFGLKDK
Sbjct: 162 KSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDK 221
Query: 738 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 917
ETRYRQRYLDLILNDFVRQKFI+RSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 222 ETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 281
Query: 918 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1097
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 282 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 341
Query: 1098 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1277
YADYHDLMEITEKM+SGMVK ITGSYK+TYHPDGPEGQAYE+DFTPPFR+ISMVEELEKA
Sbjct: 342 YADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKA 401
Query: 1278 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1457
LG+KLP+T+LFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI+PTFIC
Sbjct: 402 LGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFIC 461
Query: 1458 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 1637
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD
Sbjct: 462 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 521
Query: 1638 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
DEAMFIDE FCTALEYGLPPT GWGMGIDR+TMFLTDSNNI+EVLLFPAMKPEDKKE
Sbjct: 522 DEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDKKE 578
>ref|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1 [Mus musculus].
Length = 595
Score = 1017 bits (2629), Expect = 0.0
Identities = 497/537 (92%), Positives = 515/537 (95%)
Frame = +3
Query: 198 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 377
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDI
Sbjct: 43 SEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDI 101
Query: 378 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 557
SLT FI+EYSHLQPGDHLTD+TLKVAGRI AKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 102 SLTQFIQEYSHLQPGDHLTDVTLKVAGRIQAKRASGGKLIFYDLRGEGVKLQVMANSRNY 161
Query: 558 KSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 737
KSEEEFV INNKLRRGDIIGV+GNPGKTKKGELSIIP EITLLSPCLHMLPHLHFGLKDK
Sbjct: 162 KSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDK 221
Query: 738 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 917
ETRYRQRYLDLILNDFVRQK I+RSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 222 ETRYRQRYLDLILNDFVRQKLIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 281
Query: 918 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1097
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 282 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 341
Query: 1098 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1277
YADYHDLMEITEKM+SGMVK ITGSYK+TYHPDGPEGQAYE+DFTPPFR+ISMVEELEKA
Sbjct: 342 YADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKA 401
Query: 1278 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1457
LG+KLP+T+LFETEETRKILDDICVAKAVECPPP TTARLLDKLVGEFLEVTCI+PTFIC
Sbjct: 402 LGVKLPETSLFETEETRKILDDICVAKAVECPPPLTTARLLDKLVGEFLEVTCISPTFIC 461
Query: 1458 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 1637
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD
Sbjct: 462 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 521
Query: 1638 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
DEAMFIDE FCTALEYGLPPT GWGMGIDR+TMFLTDSNNI+EVLLFPAMKPEDKKE
Sbjct: 522 DEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDKKE 578
>ref|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 501
Score = 78.2 bits (191), Expect = 2e-14
Identities = 103/475 (21%), Positives = 191/475 (40%), Gaps = 26/475 (5%)
Frame = +3
Query: 435 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 614
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + II
Sbjct: 57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESII 114
Query: 615 GVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 734
V+G K + S ++ L ++++ P L L D
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATV 174
Query: 735 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 911
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 175 NQDTRLDNRVIDLRTSTS-QAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGAN 233
Query: 912 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 1085
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 234 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLD 290
Query: 1086 FYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
MA+ YH+++E + + K + ++ + F P ++ E
Sbjct: 291 IEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYCE 350
Query: 1263 ELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1436
L + G+++ D T K+L + K T +LDK
Sbjct: 351 ALAMLREAGVEMDDEEDLST-PNEKLLGRLVKEKY------DTDFYVLDKY------PLA 397
Query: 1437 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1616
+ P + P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 398 VRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERA 442
Query: 1617 KAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFP 1781
++ + + + +G PP G G+G++RVTM +N+++ +FP
Sbjct: 443 LHHGIDLEKI----KAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFP 493
>ref|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 653
Score = 74.7 bits (182), Expect = 2e-13
Identities = 89/336 (26%), Positives = 154/336 (45%), Gaps = 25/336 (7%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKD--KET---RYRQRYLDLILNDF 785
Q NP K GE+ I LL+ C L F +KD K+T R + RYLDL F
Sbjct: 128 QENP-KMPTGEIEIKVKTAELLNAC----KKLPFEIKDFVKKTEALRLQYRYLDL--RSF 180
Query: 786 VRQKFI-IRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYM 956
Q + +RS+++ +R +L L GF++IETP + PGGA K F+ E +
Sbjct: 181 QMQYNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSL 238
Query: 957 RIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEK 1136
+P+ + ++L+VGG+DR +++ R +R+EG PEFT + M++ + + ++
Sbjct: 239 PQSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVEQTGI----QR 294
Query: 1137 MVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEEL--------EKALGMKL 1292
+V G++++ S+ P PF ++ E L + GMK+
Sbjct: 295 LVEGLLQY---SWPGDKDP-----------LVTPFPSMTFAEALATYGTDKPDTRFGMKI 340
Query: 1293 PD-TNLFETEETRKILDDICVAK-AVECPPPRTTARLLDKLVGEFLEVTCIN-------P 1445
D +++F E R + D + + V+ A+ L K EF+ ++ P
Sbjct: 341 VDVSDVFRNTELRFLQDALAKPQGTVKAICVHDGAKYLRKEDIEFIRKFAVHHFSQEVLP 400
Query: 1446 TFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEI 1553
F+ SP AK+ +E L + + +++I
Sbjct: 401 IFLNAKKNWSSPFAKFIMEEERLELARSMEIQEEDI 436
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 64,420,344
Number of extensions: 1746940
Number of successful extensions: 5401
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5391
Number of HSP's successfully gapped: 5
Length of query: 639
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 531
Effective length of database: 12,373,671
Effective search space: 6570419301
Effective search space used: 6570419301
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007276
(1919 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [... 1140 0.0
Alignment gi|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [... 1068 0.0
Alignment gi|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytopla... 76 8e-14
Alignment gi|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 75 1e-13
Alignment gi|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitocho... 75 1e-13
>ref|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [Sus scrofa].
Length = 625
Score = 1140 bits (2950), Expect = 0.0
Identities = 565/602 (93%), Positives = 567/602 (94%)
Frame = +3
Query: 3 VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDXXXXXXXXXXXXXXXXXXXX 182
VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSD
Sbjct: 7 VRLVRGSLRQTSWAQWGQRELRLYQLAPFTTIHKDKPLSDKRSELKRRLKAEKKIAEKEA 66
Query: 183 XXXXXSEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK 362
SEKQLSQ DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK
Sbjct: 67 KQKELSEKQLSQATTAATNHTTDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHK 126
Query: 363 FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 542
FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA
Sbjct: 127 FHVDISLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMA 186
Query: 543 NSRNYKSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 722
NSRNYKSEEEFVRINNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHMLPHLHF
Sbjct: 187 NSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHF 246
Query: 723 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 902
GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA
Sbjct: 247 GLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 306
Query: 903 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 1082
VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC
Sbjct: 307 VAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTC 366
Query: 1083 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE
Sbjct: 367 EFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 426
Query: 1263 ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 1442
ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN
Sbjct: 427 ELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCIN 486
Query: 1443 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 1622
PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA
Sbjct: 487 PTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA 546
Query: 1623 KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDK 1802
KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDK
Sbjct: 547 KAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDK 606
Query: 1803 KE 1808
KE
Sbjct: 607 KE 608
>ref|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [Sus scrofa].
Length = 597
Score = 1068 bits (2763), Expect = 0.0
Identities = 525/537 (97%), Positives = 527/537 (98%)
Frame = +3
Query: 198 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 377
SEKQLSQ DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI
Sbjct: 44 SEKQLSQATTAATNHTTDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 103
Query: 378 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 557
SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 104 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 163
Query: 558 KSEEEFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 737
KSEEEFVRINNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 164 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 223
Query: 738 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 917
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF
Sbjct: 224 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 283
Query: 918 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1097
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 284 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 343
Query: 1098 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1277
YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA
Sbjct: 344 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 403
Query: 1278 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1457
LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC
Sbjct: 404 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 463
Query: 1458 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 1637
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD
Sbjct: 464 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 523
Query: 1638 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFPAMKPEDKKE 1808
DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNI+EVLLFPAMKPEDKKE
Sbjct: 524 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKE 580
>ref|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like isoform 1 [Sus
scrofa].
Length = 501
Score = 75.9 bits (185), Expect = 8e-14
Identities = 101/475 (21%), Positives = 190/475 (40%), Gaps = 26/475 (5%)
Frame = +3
Query: 435 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 614
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + I+
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 114
Query: 615 GVQGNPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 734
V+G K + S ++ L ++++ P L L D
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEEEGRATV 174
Query: 735 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 911
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 175 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 233
Query: 912 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 1085
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 234 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 290
Query: 1086 FYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1262
M + YH+++E + + K + ++ + F P ++ E
Sbjct: 291 IEMVFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQMVNKQFPCEPFKFLEPTLRLEYCE 350
Query: 1263 ELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1436
L + G+++ D T K+L + K T +LDK
Sbjct: 351 ALAMLREAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY------PLA 397
Query: 1437 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1616
+ P + P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 398 VRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERA 442
Query: 1617 KAKAAGDDEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIQEVLLFP 1781
++ + + + +G PP G G+G++RVTM +N+++ +FP
Sbjct: 443 LHHGIDLEKI----KAYIDSFRFGAPPHAGGGIGLERVTMLFLGLHNVRQTSMFP 493
>ref|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 552
Score = 75.1 bits (183), Expect = 1e-13
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQK 797
Q NP K GE+ I LL+ C + + +K ET R + RYLDL ++
Sbjct: 127 QENP-KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFVKKTETLRLQYRYLDL-RGAQMQYN 184
Query: 798 FIIRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 971
+RS+++ +R +L L GF++IETP + PGGA K F+ E + +P+
Sbjct: 185 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFVVPSREPGKFYSLPQSPQ 242
Query: 972 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1142
+ ++L+VGG+DR ++I R +R+EG PEFT + M++ D + + E ++
Sbjct: 243 QFKQLLMVGGLDRYFQIARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 299
>ref|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 651
Score = 75.1 bits (183), Expect = 1e-13
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 3/177 (1%)
Frame = +3
Query: 621 QGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQK 797
Q NP K GE+ I LL+ C + + +K ET R + RYLDL ++
Sbjct: 127 QENP-KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFVKKTETLRLQYRYLDL-RGAQMQYN 184
Query: 798 FIIRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 971
+RS+++ +R +L L GF++IETP + PGGA K F+ E + +P+
Sbjct: 185 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFVVPSREPGKFYSLPQSPQ 242
Query: 972 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1142
+ ++L+VGG+DR ++I R +R+EG PEFT + M++ D + + E ++
Sbjct: 243 QFKQLLMVGGLDRYFQIARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 299
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,783,051
Number of extensions: 1311662
Number of successful extensions: 4105
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4100
Number of HSP's successfully gapped: 5
Length of query: 639
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 534
Effective length of database: 8,729,747
Effective search space: 4661684898
Effective search space used: 4661684898
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007276
(1919 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 355 6e-95
>Sscrofa_Chr06
|| Length = 157765593
Score = 355 bits (179), Expect = 6e-95
Identities = 188/191 (98%)
Strand = Plus / Plus
Query: 548 caggaattataaatcagaagaagaatttgttcgtatcaataacaaactgcgccggggcga 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907783 caggaattataaatcagaagaagaatttgttcgtatcaataacaaactgcgccggggcga 11907842
Query: 608 cataattggagttcagggcaatcctgggaaaaccaagaagggtgagctgagcatcattcc 667
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 11907843 cataattggagttcagggcagtcctgggaaaaccaagaagggtgagctgagcatcattcc 11907902
Query: 668 ctatgagatcacactcctgtctccttgcttgcacatgttacctcatcttcactttggcct 727
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907903 ctatgagatcacgctgctgtctccttgcttgcacatgttacctcatcttcactttggcct 11907962
Query: 728 caaggacaagg 738
|||||||||||
Sbjct: 11907963 caaggacaagg 11907973
Score = 351 bits (177), Expect = 9e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1144 cagggatggtgaagcacattacaggcagttacaaggttacctaccatccagatggcccag 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911574 cagggatggtgaagcacattacaggcagttacaaggttacctaccatccagatggcccag 11911633
Query: 1204 agggtcaagcctatgagattgacttcacgcccccgttccggaaaatcagcatggtggaag 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911634 agggtcaagcctatgagattgacttcacgcccccgttccggaaaatcagcatggtggaag 11911693
Query: 1264 agcttgagaaagccctgggaatgaagctgccggacactaacctctttgaaacggaag 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911694 agcttgagaaagccctgggaatgaagctgccggacactaacctctttgaaacggaag 11911750
Score = 341 bits (172), Expect = 9e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 291 caatacttcaaaatccgcagccaggcagtgcaccaactgaaggtcagtggggaagaccca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904070 caatacttcaaaatccgcagccaggcagtgcaccaactgaaggtcagtggggaagaccca 11904129
Query: 351 tacccacacaagttccacgtcgacatctcgctcactcacttcatcgaagaatacagtcac 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904130 tacccacacaagttccacgtcgacatctcgctcactcacttcatcgaagaatacagtcac 11904189
Query: 411 ctgcagcctggggaccacctgactgacatcaccttaaaggtggcaggtagga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904190 ctgcagcctggggaccacctgactgacatcaccttaaaggtggcaggtagga 11904241
Score = 313 bits (158), Expect = 2e-82
Identities = 161/162 (99%)
Strand = Plus / Plus
Query: 129 agtgagctaaagagacgccttaaagctgagaagaaaatagcagagaaggaggccaagcag 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903066 agtgagctaaagagacgccttaaagctgagaagaaaatagcagagaaggaggccaagcag 11903125
Query: 189 aaggagctcagtgagaaacagctaagccaggccaccactgctgccaccaaccacaccact 248
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903126 aaggagctcagtgaaaaacagctaagccaggccaccactgctgccaccaaccacaccact 11903185
Query: 249 gacaatggcgttgctgcggaggaggagagcctggacccaaat 290
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903186 gacaatggcgttgctgcggaggaggagagcctggacccaaat 11903227
Score = 313 bits (158), Expect = 2e-82
Identities = 164/166 (98%)
Strand = Plus / Plus
Query: 982 agatgctggtggtcggtggtattgaccgggtgtatgaaattggacgccagttccggaatg 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911302 agatgctggtggtcggtggtattgaccgggtgtatgaaattggacgccagttccggaatg 11911361
Query: 1042 aaggaatcgatttgactcacaatcccgagttcaccacctgtgagttctacatggcctatg 1101
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 11911362 aaggaatcgatttgactcacaatcccgagttcaccacctgtgaattctacatggcctatg 11911421
Query: 1102 cggactatcacgatctcatggaaatcacagagaagatggtttcagg 1147
||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 11911422 cggactaccacgatctcatggaaatcacagagaagatggtttcagg 11911467
Score = 281 bits (142), Expect = 7e-73
Identities = 155/158 (98%), Gaps = 1/158 (0%)
Strand = Plus / Plus
Query: 1762 aggaagtgcttctgtttcccgccatgaaacctgaagacaagaaggagaaatgtaaccgcc 1821
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11914366 aggaagtgcttctgtttcccgccatgaaacctgaagacaagaaggagaa-tgtaaccgcc 11914424
Query: 1822 actgacgcggcggagaacacagcacctggcacgtctgtctagaaaacagtgatggcacgt 1881
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11914425 actgacacggcggagaacacagcacctggcacgtctgtctagaaaacagtgatggcacgt 11914484
Query: 1882 cacacgacatggacatcgtcgctgcgtctctgcccaag 1919
|||||||||||| |||||||||||||||||||||||||
Sbjct: 11914485 cacacgacatgggcatcgtcgctgcgtctctgcccaag 11914522
Score = 268 bits (135), Expect = 1e-68
Identities = 141/143 (98%)
Strand = Plus / Plus
Query: 1618 aggccaaggccgctggcgatgatgaggctatgttcatagacgaaaccttctgcaccgccc 1677
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 11913742 aggccaaggccgctggcgatgatgaggccatgttcatagacgaaaccttctgcaccgccc 11913801
Query: 1678 tggaatatgggctgccccccacaggtggctggggcatgggcatcgaccgcgtcactatgt 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11913802 tggaatatgggctgccccccacaggtggctggggcatgggcatcgaccgcgtcactatgt 11913861
Query: 1738 ttctcacggactccaataacatc 1760
|||||||||| ||||||||||||
Sbjct: 11913862 ttctcacggattccaataacatc 11913884
Score = 258 bits (130), Expect = 1e-65
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 ctgtaaggctggttagggggtccctgcgccaaacctcctgggcacagtgggggcagaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11900792 ctgtaaggctggttagggggtccctgcgccaaacctcctgggcacagtgggggcagaggg 11900851
Query: 61 agctgcgcctgtatcaacttgcccctttcacaacgattcacaaggacaagccactttctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11900852 agctgcgcctgtatcaacttgcccctttcacaacgattcacaaggacaagccactttctg 11900911
Query: 121 ataaaagaag 130
||||||||||
Sbjct: 11900912 ataaaagaag 11900921
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1492 ggcaccgctctaaagagggtctgaccgaacgctttgagctctttgtcatgaaaaaggaaa 1551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11912990 ggcaccgctctaaagagggtctgaccgaacgctttgagctctttgtcatgaaaaaggaaa 11913049
Query: 1552 tatgcaacgcctacacggagctgaatgaccctgtgcgacagcggcagctttttgaagaac 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11913050 tatgcaacgcctacacggagctgaatgaccctgtgcgacagcggcagctttttgaagaac 11913109
Query: 1612 aggccaagg 1620
|||||||||
Sbjct: 11913110 aggccaagg 11913118
Score = 234 bits (118), Expect = 1e-58
Identities = 121/122 (99%)
Strand = Plus / Plus
Query: 862 agattgaaactcccatgatgaacatcatcccagggggagctgtggccaagccttttatca 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11910018 agattgaaactcccatgatgaacatcatcccagggggagctgtggccaagccttttatca 11910077
Query: 922 cctaccacaatgagctggacatgaatttatacatgagaattgctccagagctctaccata 981
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11910078 cctaccacaacgagctggacatgaatttatacatgagaattgctccagagctctaccata 11910137
Query: 982 ag 983
||
Sbjct: 11910138 ag 11910139
Score = 230 bits (116), Expect = 2e-57
Identities = 125/128 (97%)
Strand = Plus / Plus
Query: 736 aggaaacacggtatcgtcagcgatacttggacttgatcctgaatgactttgtgaggcaga 795
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 11908057 aggaaacacggtatcgtcagcgatacttggacttgatcctgaatgacttcgtgaggcaga 11908116
Query: 796 aatttatcatccgctccaagatcatcacatacataagaagtttcttggatgcactgggat 855
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11908117 aatttatcatccgctccaagatcatcacatacataagaagtttcttggatgcgttgggat 11908176
Query: 856 tcctagag 863
||||||||
Sbjct: 11908177 tcctagag 11908184
Score = 184 bits (93), Expect = 1e-43
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 455 aggtaggatccatgccaaaagagcttctgggggtaagctcatcttctatgaccttcgagg 514
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11907343 aggtaggatccatgccaaaagagcttctgggggaaagctcatcttctatgaccttcgagg 11907402
Query: 515 agagggggtcaagttgcaagtcatggccaattccagg 551
|||||||||||||||||||||||||||||||||||||
Sbjct: 11907403 agagggggtcaagttgcaagtcatggccaattccagg 11907439
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1403 taagcttgtcggcgagttcctggaagtaacgtgcatcaatcctacattcatctgtgatca 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11912321 taagcttgtcggcgagttcctggaagtaacgtgcatcaatcctacattcatctgtgatca 11912380
Query: 1463 cccgcagataatgagccctctggccaaatgg 1493
|||||||||||||||||||||||||||||||
Sbjct: 11912381 cccgcagataatgagccctctggccaaatgg 11912411
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1319 agaaactcgcaaaattcttgacgatatctgtgtggcaaaagccgtggaatgccctccacc 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911908 agaaactcgcaaaattcttgacgatatctgtgtggcaaaagccgtggaatgccctccacc 11911967
Query: 1379 ccggaccacagccaggctccttgataag 1406
||||||||||||||||||||||||||||
Sbjct: 11911968 ccggaccacagccaggctccttgataag 11911995
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 54,781,033
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 14
Length of query: 1919
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1897
Effective length of database: 2,808,408,574
Effective search space: 5327551064878
Effective search space used: 5327551064878
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)