Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007277
(1775 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus]. 991 0.0
Alignment gi|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial prec... 75 1e-13
Alignment gi|XP_001789065.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 66 9e-11
Alignment gi|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos t... 60 6e-09
>ref|NP_001029528.1| lysyl-tRNA synthetase [Bos taurus].
Length = 623
Score = 991 bits (2561), Expect = 0.0
Identities = 490/537 (91%), Positives = 503/537 (93%)
Frame = +2
Query: 164 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 343
SEKQLSQ ++GVAAEEESLDPNQYFKIRSQA+HQLKV+GEDPYPHKFHVDI
Sbjct: 72 SEKQLSQAAASNHSA--EDGVAAEEESLDPNQYFKIRSQAIHQLKVNGEDPYPHKFHVDI 129
Query: 344 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 523
SLTHFI+EYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 130 SLTHFIQEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 189
Query: 524 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 703
KSEEEF+RINNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 190 KSEEEFIRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 249
Query: 704 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 883
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 250 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 309
Query: 884 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1063
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 310 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 369
Query: 1064 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1243
YADYHDLMEITEKM+SGMVKHITGSYKVTYHPDG EGQAYEIDFTPPFRKISMVEELEKA
Sbjct: 370 YADYHDLMEITEKMISGMVKHITGSYKVTYHPDGSEGQAYEIDFTPPFRKISMVEELEKA 429
Query: 1244 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1423
LGMKLP+TNLFETEETR+ILDDICVAK VECPPPRTTARLLDKLVGEFLEVTCINPTFIC
Sbjct: 430 LGMKLPETNLFETEETRRILDDICVAKDVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 489
Query: 1424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGD 1603
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGD
Sbjct: 490 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 549
Query: 1604 DEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
DEAMFIDETFCTALEYGLPPTGGWG G ++ PAMKP DKKE
Sbjct: 550 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKE 606
>ref|NP_001095692.1| aspartyl-tRNA synthetase, mitochondrial precursor [Bos taurus].
Length = 651
Score = 75.5 bits (184), Expect = 1e-13
Identities = 78/310 (25%), Positives = 142/310 (45%), Gaps = 17/310 (5%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQKFIIRS 778
K GE+ I LL+ C + + +K ET R + RYLDL + ++ +RS
Sbjct: 130 KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFMKKTETLRLQYRYLDL-RSVQMQYNLRLRS 188
Query: 779 KIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM 952
+++ +R +L L GF+++ETP + PGGA K F+ E + +P+ + ++
Sbjct: 189 QMVMKMREYLCNLHGFVDVETPTLFKRTPGGA--KEFVIPSREPGKFYSLPQSPQQFKQL 246
Query: 953 LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHIT 1132
L+VGG+DR +++ R +R+EG PEFT + M++ D + + ++ G++++
Sbjct: 247 LMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGV----QSLIEGLLQYSW 302
Query: 1133 GSYK---VTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPD-TNLFETEETRKI 1300
S K V P P +A T ++ + GMK+ D +++F E +
Sbjct: 303 PSDKDPLVVPFPSMPFAEALASYGT---------DKPDTRFGMKIVDISDMFRNTEVGFL 353
Query: 1301 LD----------DICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPL 1450
D IC+ K + + + F E + P F+ + SP+
Sbjct: 354 QDALSKPQGTVKAICIRKGAKYLKRKDIESIRKFAADHFNEE--VLPIFLKTNENWNSPV 411
Query: 1451 AKWHRSKEGL 1480
AK+ ++GL
Sbjct: 412 AKFIMEEQGL 421
>ref|XP_001789065.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Bos taurus].
Length = 456
Score = 66.2 bits (160), Expect = 9e-11
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 3/172 (1%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQKFIIRS 778
K GE+ I LL+ C + + +K ET R + RYLDL + ++ +RS
Sbjct: 130 KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFMKKTETLRLQYRYLDL-RSVQMQYNLRLRS 188
Query: 779 KIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM 952
+++ +R +L L GF+++ETP + PGGA K F+ E + +P+ +
Sbjct: 189 QMVMKMREYLCNLHGFVDVETPTLFKRTPGGA--KEFVIPSREPGKFYSLPQSPQQFKPP 246
Query: 953 LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1108
++GG+DR +++ R +R+EG PEFT + M++ D + + E ++
Sbjct: 247 HMLGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGVQSLIEGLL 298
>ref|NP_001030257.1| aspartyl-tRNA synthetase, cytoplasmic [Bos taurus].
Length = 501
Score = 60.1 bits (144), Expect = 6e-09
Identities = 97/463 (20%), Positives = 182/463 (39%), Gaps = 33/463 (7%)
Frame = +2
Query: 395 LTDITLKVAG-------RIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRIN 553
++D+T++ AG R+H RA G K F LR + +Q + ++ S++ V+
Sbjct: 48 ISDLTVQKAGEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFA 105
Query: 554 NKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD------- 700
+ + I+ V+G K + S ++ L ++++ P L L D
Sbjct: 106 ANINKESIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVE 165
Query: 701 ----------KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMN 850
++TR R +DL + + F ++S I R L GF+EI+TP +
Sbjct: 166 GEEEGRATVNQDTRLDNRVIDLRTSTS-QAIFRLQSGICHPFRETLTNKGFVEIQTPKII 224
Query: 851 IIPGGAVAKPF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-T 1024
A F ++Y N Y+ +P+LY +M + ++V+ IG FR E +
Sbjct: 225 SAASEGGANVFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHR 281
Query: 1025 HNPEFTTCEFYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTP 1201
H EF + MA+ YH+++E + + K + ++ + F
Sbjct: 282 HLTEFVGLDIEMAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLE 341
Query: 1202 PFRKISMVEELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKL 1375
P ++ E L + G+++ D T K+L + K T +LDK
Sbjct: 342 PTLRLEYCEALAMLREAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY 394
Query: 1376 VGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVR 1555
+ P + P+ + +++F+ +EI + ++DP
Sbjct: 395 ------PLAVRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP-- 435
Query: 1556 QRQLFEEQAKARPAGDDEAMFIDETFCTALEYGLPPTGGWGHG 1684
QL E+A ++ + + + +G PP G G G
Sbjct: 436 --QLVTERALHHGIDLEKI----KAYIDSFRFGAPPHAGGGIG 472
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,829,652
Number of extensions: 1910350
Number of successful extensions: 5961
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5950
Number of HSP's successfully gapped: 4
Length of query: 591
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,107,870
Effective search space: 6814101210
Effective search space used: 6814101210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007277
(1775 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536777.2| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 999 0.0
Alignment gi|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 979 0.0
Alignment gi|XP_850403.1| PREDICTED: similar to lysyl-tRNA synthetase iso... 979 0.0
Alignment gi|XP_861414.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 898 0.0
Alignment gi|XP_861505.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 785 0.0
Alignment gi|XP_861471.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 785 0.0
Alignment gi|XP_861443.1| PREDICTED: similar to Lysyl-tRNA synthetase (Ly... 775 0.0
Alignment gi|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase ... 72 2e-12
Alignment gi|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase ... 62 2e-09
Alignment gi|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase ... 59 2e-08
>ref|XP_536777.2| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 1 [Canis familiaris].
Length = 597
Score = 999 bits (2583), Expect = 0.0
Identities = 495/580 (85%), Positives = 513/580 (88%)
Frame = +2
Query: 35 MAAVQAAEVKVDGAEPKLSXXXXXXXXXXXXXXXXXXXXXXXXSEKQLSQXXXXXXXXXX 214
MAAVQ AEVKVD EPKLS SEKQLSQ
Sbjct: 1 MAAVQGAEVKVDAGEPKLSKNELKRRLKAEKKIAEKEAKQKELSEKQLSQATAAATNHTT 60
Query: 215 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 394
DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDISLTHFIEEY HLQPGDH
Sbjct: 61 DNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDISLTHFIEEYGHLQPGDH 120
Query: 395 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 574
LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF+ INNKLRRGD
Sbjct: 121 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 180
Query: 575 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 754
IIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
Sbjct: 181 IIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 240
Query: 755 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 934
RQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
Sbjct: 241 RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 300
Query: 935 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 1114
ELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKM+SG
Sbjct: 301 ELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMISG 360
Query: 1115 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 1294
MVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELEKALG+KLP+T LFETEETR
Sbjct: 361 MVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELEKALGVKLPETKLFETEETR 420
Query: 1295 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 1474
KILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTFICDHPQIMSPLAKWHRSKE
Sbjct: 421 KILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTFICDHPQIMSPLAKWHRSKE 480
Query: 1475 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGDDEAMFIDETFCTALEYG 1654
GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGDDEAMFIDE FCTALEYG
Sbjct: 481 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG 540
Query: 1655 LPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
LPPT GWG G ++ PAMKP DKK+
Sbjct: 541 LPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 580
>ref|XP_861533.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 8 [Canis
familiaris].
Length = 625
Score = 979 bits (2532), Expect = 0.0
Identities = 479/537 (89%), Positives = 497/537 (92%)
Frame = +2
Query: 164 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 343
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDI
Sbjct: 72 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 131
Query: 344 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 523
SLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 132 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 191
Query: 524 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 703
KSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 192 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 251
Query: 704 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 883
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 252 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 311
Query: 884 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1063
ITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 312 ITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 371
Query: 1064 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1243
YADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELEKA
Sbjct: 372 YADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELEKA 431
Query: 1244 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1423
LG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTFIC
Sbjct: 432 LGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTFIC 491
Query: 1424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGD 1603
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGD
Sbjct: 492 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 551
Query: 1604 DEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
DEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP DKK+
Sbjct: 552 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 608
>ref|XP_850403.1| PREDICTED: similar to lysyl-tRNA synthetase isoform 3 [Canis
familiaris].
Length = 625
Score = 979 bits (2532), Expect = 0.0
Identities = 479/537 (89%), Positives = 497/537 (92%)
Frame = +2
Query: 164 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 343
SEKQLSQ DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDI
Sbjct: 72 SEKQLSQATAAATNHTTDNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDI 131
Query: 344 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 523
SLTHFIEEY HLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 132 SLTHFIEEYGHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 191
Query: 524 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 703
KSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 192 KSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 251
Query: 704 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 883
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 252 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 311
Query: 884 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1063
ITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 312 ITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 371
Query: 1064 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1243
YADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELEKA
Sbjct: 372 YADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELEKA 431
Query: 1244 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1423
LG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTFIC
Sbjct: 432 LGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTFIC 491
Query: 1424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGD 1603
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGD
Sbjct: 492 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 551
Query: 1604 DEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
DEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP DKK+
Sbjct: 552 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 608
>ref|XP_861414.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 4 [Canis familiaris].
Length = 557
Score = 898 bits (2320), Expect = 0.0
Identities = 456/580 (78%), Positives = 473/580 (81%)
Frame = +2
Query: 35 MAAVQAAEVKVDGAEPKLSXXXXXXXXXXXXXXXXXXXXXXXXSEKQLSQXXXXXXXXXX 214
MAAVQ AEVKVD EPKLS SEKQLSQ
Sbjct: 1 MAAVQGAEVKVDAGEPKLSKNELKRRLKAEKKIAEKEAKQKELSEKQLSQATAAATNHTT 60
Query: 215 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 394
DN V AEEESLDPNQYFKIRSQA+HQLK++GEDPYPHKFHVDISLTHFIEEY HLQPGDH
Sbjct: 61 DNDVGAEEESLDPNQYFKIRSQAIHQLKINGEDPYPHKFHVDISLTHFIEEYGHLQPGDH 120
Query: 395 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 574
LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF+ INNKLRRGD
Sbjct: 121 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 180
Query: 575 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 754
IIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
Sbjct: 181 IIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 240
Query: 755 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 934
RQKFIIRSKIITYIRSFLD LGFLEI
Sbjct: 241 RQKFIIRSKIITYIRSFLDELGFLEI---------------------------------- 266
Query: 935 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 1114
LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKM+SG
Sbjct: 267 ------LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMISG 320
Query: 1115 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 1294
MVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELEKALG+KLP+T LFETEETR
Sbjct: 321 MVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELEKALGVKLPETKLFETEETR 380
Query: 1295 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 1474
KILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTFICDHPQIMSPLAKWHRSKE
Sbjct: 381 KILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTFICDHPQIMSPLAKWHRSKE 440
Query: 1475 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGDDEAMFIDETFCTALEYG 1654
GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGDDEAMFIDE FCTALEYG
Sbjct: 441 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG 500
Query: 1655 LPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
LPPT GWG G ++ PAMKP DKK+
Sbjct: 501 LPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 540
>ref|XP_861505.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 7 [Canis familiaris].
Length = 441
Score = 785 bits (2026), Expect = 0.0
Identities = 382/424 (90%), Positives = 397/424 (93%)
Frame = +2
Query: 503 MANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHL 682
MANSRNYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHL
Sbjct: 1 MANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 60
Query: 683 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPG 862
HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPG
Sbjct: 61 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPG 120
Query: 863 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 1042
GAVAKPFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFT
Sbjct: 121 GAVAKPFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 180
Query: 1043 TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISM 1222
TCEFYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISM
Sbjct: 181 TCEFYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISM 240
Query: 1223 VEELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1402
VEELEKALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TC
Sbjct: 241 VEELEKALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTC 300
Query: 1403 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1582
INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA
Sbjct: 301 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 360
Query: 1583 KARPAGDDEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPX 1762
KA+ AGDDEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP
Sbjct: 361 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPE 420
Query: 1763 DKKE 1774
DKK+
Sbjct: 421 DKKD 424
>ref|XP_861471.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 6 [Canis familiaris].
Length = 441
Score = 785 bits (2026), Expect = 0.0
Identities = 382/424 (90%), Positives = 397/424 (93%)
Frame = +2
Query: 503 MANSRNYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHL 682
MANSRNYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHL
Sbjct: 1 MANSRNYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHL 60
Query: 683 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPG 862
HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPG
Sbjct: 61 HFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPG 120
Query: 863 GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 1042
GAVAKPFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFT
Sbjct: 121 GAVAKPFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFT 180
Query: 1043 TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISM 1222
TCEFYMAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISM
Sbjct: 181 TCEFYMAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISM 240
Query: 1223 VEELEKALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1402
VEELEKALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TC
Sbjct: 241 VEELEKALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTC 300
Query: 1403 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1582
INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA
Sbjct: 301 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 360
Query: 1583 KARPAGDDEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPX 1762
KA+ AGDDEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP
Sbjct: 361 KAKAAGDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPE 420
Query: 1763 DKKE 1774
DKK+
Sbjct: 421 DKKD 424
>ref|XP_861443.1| PREDICTED: similar to Lysyl-tRNA synthetase (Lysine--tRNA ligase)
(LysRS) isoform 5 [Canis familiaris].
Length = 437
Score = 775 bits (2002), Expect = 0.0
Identities = 377/419 (89%), Positives = 392/419 (93%)
Frame = +2
Query: 518 NYKSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK 697
NYKSEEEF+ INNKLRRGDIIGV+G+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK
Sbjct: 2 NYKSEEEFIHINNKLRRGDIIGVKGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLK 61
Query: 698 DKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 877
DKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAK
Sbjct: 62 DKETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAK 121
Query: 878 PFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFY 1057
PFITYHNELDMNLYMRIAPELYHK+LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFY
Sbjct: 122 PFITYHNELDMNLYMRIAPELYHKILVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFY 181
Query: 1058 MAYADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELE 1237
MAYADYHDLMEITEKM+SGMVKHITGSYKVTYHPDGPEG+AYEIDFTPPFR+ISMVEELE
Sbjct: 182 MAYADYHDLMEITEKMISGMVKHITGSYKVTYHPDGPEGEAYEIDFTPPFRRISMVEELE 241
Query: 1238 KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTF 1417
KALG+KLP+T LFETEETRKILDDIC+A+AVECPPPRTTARLLDKLVGEFLE TCINPTF
Sbjct: 242 KALGVKLPETKLFETEETRKILDDICLARAVECPPPRTTARLLDKLVGEFLETTCINPTF 301
Query: 1418 ICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPA 1597
ICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ A
Sbjct: 302 ICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAA 361
Query: 1598 GDDEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
GDDEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP DKK+
Sbjct: 362 GDDEAMFIDENFCTALEYGLPPTAGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKD 420
>ref|XP_547457.2| PREDICTED: similar to aspartyl-tRNA synthetase 2 (mitochondrial)
[Canis familiaris].
Length = 652
Score = 71.6 bits (174), Expect = 2e-12
Identities = 56/177 (31%), Positives = 93/177 (52%), Gaps = 8/177 (4%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHLHFGLKD--KET---RYRQRYLDLILNDFVRQKF 766
K GE+ I LL+ C L F +KD K+T R + RYLDL F Q
Sbjct: 131 KMPTGEIEIKVKTAELLNSC----KKLPFEIKDFVKKTEALRLQYRYLDL--RSFQMQYN 184
Query: 767 I-IRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 937
+ +RS+++ +R +L L GF+++ETP + PGGA K F+ E + +P+
Sbjct: 185 LRLRSQMVMKMREYLCNLHGFVDVETPTLFKRTPGGA--KEFVIPSREPGKFYCLPQSPQ 242
Query: 938 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1108
+ ++L+VGG+DR +++ R +R+EG PEFT + M++ D + + E ++
Sbjct: 243 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 299
>ref|XP_848666.1| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 2 [Canis familiaris].
Length = 501
Score = 61.6 bits (148), Expect = 2e-09
Identities = 96/457 (21%), Positives = 177/457 (38%), Gaps = 26/457 (5%)
Frame = +2
Query: 392 HLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRG 571
H D + V R+H RA G K F LR + +Q + ++ S++ V+ + +
Sbjct: 54 HKADEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKE 111
Query: 572 DIIGVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD------------- 700
I+ V+G K + S ++ L ++++ P L L D
Sbjct: 112 SIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEVEGEEEGR 171
Query: 701 ----KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGA 868
++TR R +DL + + F ++S I R L GF+EI+TP +
Sbjct: 172 ATVNQDTRLDNRVIDLRTSTS-QAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEG 230
Query: 869 VAKPF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFT 1042
A F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF
Sbjct: 231 GANVFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFV 287
Query: 1043 TCEFYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKIS 1219
+ MA+ YH+++E + + K + ++ + F P ++
Sbjct: 288 GLDIEMAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLE 347
Query: 1220 MVEELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLE 1393
E L + G+++ D T K+L + K T +LDK
Sbjct: 348 YCEALAMLREAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY------ 394
Query: 1394 VTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFE 1573
+ P + P+ + +++F+ +EI + ++DP QL
Sbjct: 395 PLAVRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLT 439
Query: 1574 EQAKARPAGDDEAMFIDETFCTALEYGLPPTGGWGHG 1684
E+A ++ + + + +G PP G G G
Sbjct: 440 ERALHHGIDLEKI----KAYIDSFRFGAPPHAGGGIG 472
>ref|XP_533339.2| PREDICTED: similar to Aspartyl-tRNA synthetase (Aspartate--tRNA
ligase) (AspRS) isoform 1 [Canis familiaris].
Length = 481
Score = 58.5 bits (140), Expect = 2e-08
Identities = 93/448 (20%), Positives = 172/448 (38%), Gaps = 17/448 (3%)
Frame = +2
Query: 392 HLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRG 571
H D + V R+H RA G K F LR + +Q + ++ S++ V+ + +
Sbjct: 54 HKADEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKE 111
Query: 572 DIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDF 751
I+ V+G K + S ++ L ++++ + L L L+D
Sbjct: 112 SIVDVEGVVRKVNQKIGSCTQQDVELHVQKIYVIS------------LAEPRLPLQLDDA 159
Query: 752 VRQK------------FIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF-ITY 892
VR + F ++S I R L GF+EI+TP + A F ++Y
Sbjct: 160 VRPEVEGEETSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGANVFTVSY 219
Query: 893 HNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAY- 1066
N Y+ +P+LY +M + ++V+ IG FR E + H EF + MA+
Sbjct: 220 FKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIEMAFN 276
Query: 1067 ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELE--K 1240
YH+++E + + K + ++ + F P ++ E L +
Sbjct: 277 YHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLEYCEALAMLR 336
Query: 1241 ALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFI 1420
G+++ D T K+L + K T +LDK + P +
Sbjct: 337 EAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY------PLAVRPFYT 383
Query: 1421 CDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAG 1600
P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 384 MPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERALHHGID 428
Query: 1601 DDEAMFIDETFCTALEYGLPPTGGWGHG 1684
++ + + + +G PP G G G
Sbjct: 429 LEKI----KAYIDSFRFGAPPHAGGGIG 452
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 71,049,289
Number of extensions: 1984005
Number of successful extensions: 6149
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6123
Number of HSP's successfully gapped: 12
Length of query: 591
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 483
Effective length of database: 15,274,216
Effective search space: 7377446328
Effective search space used: 7377446328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007277
(1775 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens]. 1007 0.0
Alignment gi|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapien... 983 0.0
Alignment gi|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precurs... 72 1e-12
Alignment gi|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sap... 63 8e-10
>ref|NP_005539.1| lysyl-tRNA synthetase isoform 2 [Homo sapiens].
Length = 597
Score = 1007 bits (2604), Expect = 0.0
Identities = 500/580 (86%), Positives = 518/580 (89%)
Frame = +2
Query: 35 MAAVQAAEVKVDGAEPKLSXXXXXXXXXXXXXXXXXXXXXXXXSEKQLSQXXXXXXXXXX 214
MAAVQAAEVKVDG+EPKLS SEKQLSQ
Sbjct: 1 MAAVQAAEVKVDGSEPKLSKNELKRRLKAEKKVAEKEAKQKELSEKQLSQATAAATNHTT 60
Query: 215 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 394
DNGV EEES+DPNQY+KIRSQA+HQLKV+GEDPYPHKFHVDISLT FI++YSHLQPGDH
Sbjct: 61 DNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDISLTDFIQKYSHLQPGDH 120
Query: 395 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 574
LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEF+ INNKLRRGD
Sbjct: 121 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGD 180
Query: 575 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 754
IIGVQG+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
Sbjct: 181 IIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 240
Query: 755 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 934
RQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
Sbjct: 241 RQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 300
Query: 935 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 1114
ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
Sbjct: 301 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 360
Query: 1115 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 1294
MVKHITGSYKVTYHPDGPEGQAY++DFTPPFR+I+MVEELEKALGMKLP+TNLFETEETR
Sbjct: 361 MVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETR 420
Query: 1295 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 1474
KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
Sbjct: 421 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 480
Query: 1475 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGDDEAMFIDETFCTALEYG 1654
GLTERFELFVMKKEICNAYTELNDP+RQRQLFEEQAKA+ AGDDEAMFIDE FCTALEYG
Sbjct: 481 GLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG 540
Query: 1655 LPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
LPPT GWG G ++ PAMKP DKKE
Sbjct: 541 LPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKE 580
>ref|NP_001123561.1| lysyl-tRNA synthetase isoform 1 [Homo sapiens].
Length = 625
Score = 983 bits (2542), Expect = 0.0
Identities = 482/537 (89%), Positives = 499/537 (92%)
Frame = +2
Query: 164 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 343
SEKQLSQ DNGV EEES+DPNQY+KIRSQA+HQLKV+GEDPYPHKFHVDI
Sbjct: 72 SEKQLSQATAAATNHTTDNGVGPEEESVDPNQYYKIRSQAIHQLKVNGEDPYPHKFHVDI 131
Query: 344 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 523
SLT FI++YSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 132 SLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 191
Query: 524 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 703
KSEEEF+ INNKLRRGDIIGVQG+PGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 192 KSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 251
Query: 704 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 883
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 252 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 311
Query: 884 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1063
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 312 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 371
Query: 1064 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1243
YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY++DFTPPFR+I+MVEELEKA
Sbjct: 372 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKA 431
Query: 1244 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1423
LGMKLP+TNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC
Sbjct: 432 LGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 491
Query: 1424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGD 1603
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDP+RQRQLFEEQAKA+ AGD
Sbjct: 492 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQLFEEQAKAKAAGD 551
Query: 1604 DEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
DEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP DKKE
Sbjct: 552 DEAMFIDENFCTALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPEDKKE 608
>ref|NP_060592.2| aspartyl-tRNA synthetase, mitochondrial precursor [Homo sapiens].
Length = 645
Score = 72.4 bits (176), Expect = 1e-12
Identities = 53/173 (30%), Positives = 91/173 (52%), Gaps = 4/173 (2%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHL-HFGLKDKETRYRQRYLDLILNDFVRQKFI-IR 775
K GE+ I LL+ C + + +F K + R + RYLDL F Q + +R
Sbjct: 133 KMPTGEIEIKVKTAELLNACKKLPFEIKNFVKKTEALRLQYRYLDL--RSFQMQYNLRLR 190
Query: 776 SKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHK 949
S+++ +R +L L GF++IETP + PGGA K F+ E + +P+ + +
Sbjct: 191 SQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQQFKQ 248
Query: 950 MLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1108
+L+VGG+DR +++ R +R+EG PEFT + M++ D + + E ++
Sbjct: 249 LLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 301
>ref|NP_001340.2| aspartyl-tRNA synthetase, cytoplasmic [Homo sapiens].
Length = 501
Score = 63.2 bits (152), Expect = 8e-10
Identities = 96/454 (21%), Positives = 177/454 (38%), Gaps = 26/454 (5%)
Frame = +2
Query: 401 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 580
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + I+
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 114
Query: 581 GVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 700
V+G K + S ++ L ++++ P L L D
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
Query: 701 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 877
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 175 NQDTRLDNRVIDLRTSTS-QAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGAN 233
Query: 878 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 1051
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 234 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGLD 290
Query: 1052 FYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1228
MA+ YH++ME + + K + ++ + F P ++ E
Sbjct: 291 IEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYCE 350
Query: 1229 ELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1402
L + G+++ D + T K+L + K T +LDK
Sbjct: 351 ALAMLREAGVEMGDEDDLST-PNEKLLGHLVKEKY------DTDFYILDKY------PLA 397
Query: 1403 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1582
+ P + P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 398 VRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERA 442
Query: 1583 KARPAGDDEAMFIDETFCTALEYGLPPTGGWGHG 1684
++ + + + +G PP G G G
Sbjct: 443 LHHGIDLEKI----KAYIDSFRFGAPPHAGGGIG 472
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,554,867
Number of extensions: 1944371
Number of successful extensions: 6075
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6057
Number of HSP's successfully gapped: 4
Length of query: 591
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 483
Effective length of database: 14,737,052
Effective search space: 7117996116
Effective search space used: 7117996116
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007277
(1775 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus]. 978 0.0
Alignment gi|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1... 970 0.0
Alignment gi|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculu... 968 0.0
Alignment gi|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precurs... 73 6e-13
Alignment gi|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1... 59 9e-09
>ref|NP_444322.1| lysyl-tRNA synthetase isoform 2 [Mus musculus].
Length = 595
Score = 978 bits (2528), Expect = 0.0
Identities = 490/580 (84%), Positives = 512/580 (88%)
Frame = +2
Query: 35 MAAVQAAEVKVDGAEPKLSXXXXXXXXXXXXXXXXXXXXXXXXSEKQLSQXXXXXXXXXX 214
MA +Q +EVKVDG E KLS SEKQL+Q
Sbjct: 1 MATLQESEVKVDG-EQKLSKNELKRRLKAEKKLAEKEAKQKELSEKQLNQTASAPNHTA- 58
Query: 215 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 394
DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDISLT FI+EYSHLQPGDH
Sbjct: 59 DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDH 118
Query: 395 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 574
LTD+TLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFV INNKLRRGD
Sbjct: 119 LTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGD 178
Query: 575 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 754
IIGV+G+PGKTKKGELSIIP EITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
Sbjct: 179 IIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 238
Query: 755 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 934
RQKFI+RSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
Sbjct: 239 RQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 298
Query: 935 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 1114
ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKM+SG
Sbjct: 299 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSG 358
Query: 1115 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 1294
MVK ITGSYK+TYHPDGPEGQAYE+DFTPPFR+ISMVEELEKALG+KLP+T+LFETEETR
Sbjct: 359 MVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKALGVKLPETSLFETEETR 418
Query: 1295 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 1474
KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI+PTFICDHPQIMSPLAKWHRSKE
Sbjct: 419 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFICDHPQIMSPLAKWHRSKE 478
Query: 1475 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGDDEAMFIDETFCTALEYG 1654
GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGDDEAMFIDE FCTALEYG
Sbjct: 479 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG 538
Query: 1655 LPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
LPPT GWG G ++ PAMKP DKKE
Sbjct: 539 LPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDKKE 578
>ref|XP_909898.1| PREDICTED: lysyl-tRNA synthetase-like isoform 1 [Mus musculus].
Length = 595
Score = 970 bits (2507), Expect = 0.0
Identities = 487/580 (83%), Positives = 509/580 (87%)
Frame = +2
Query: 35 MAAVQAAEVKVDGAEPKLSXXXXXXXXXXXXXXXXXXXXXXXXSEKQLSQXXXXXXXXXX 214
MA +Q +EVKVDG E KLS SEKQL+Q
Sbjct: 1 MATLQESEVKVDG-EQKLSKNELKRRLKAEKKLAEKEAKQKELSEKQLNQTASAPNHTA- 58
Query: 215 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 394
DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDISLT FI+EYSHLQPGDH
Sbjct: 59 DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDISLTQFIQEYSHLQPGDH 118
Query: 395 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 574
LTD+TLKVAGRI AKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFV INNKLRRGD
Sbjct: 119 LTDVTLKVAGRIQAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVHINNKLRRGD 178
Query: 575 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 754
IIGV+G+PGKTKKGELSIIP EITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
Sbjct: 179 IIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 238
Query: 755 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 934
RQK I+RSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
Sbjct: 239 RQKLIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 298
Query: 935 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 1114
ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKM+SG
Sbjct: 299 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMLSG 358
Query: 1115 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 1294
MVK ITGSYK+TYHPDGPEGQAYE+DFTPPFR+ISMVEELEKALG+KLP+T+LFETEETR
Sbjct: 359 MVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKALGVKLPETSLFETEETR 418
Query: 1295 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 1474
KILDDICVAKAVECPPP TTARLLDKLVGEFLEVTCI+PTFICDHPQIMSPLAKWHRSKE
Sbjct: 419 KILDDICVAKAVECPPPLTTARLLDKLVGEFLEVTCISPTFICDHPQIMSPLAKWHRSKE 478
Query: 1475 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGDDEAMFIDETFCTALEYG 1654
GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGDDEAMFIDE FCTALEYG
Sbjct: 479 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDENFCTALEYG 538
Query: 1655 LPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
LPPT GWG G ++ PAMKP DKKE
Sbjct: 539 LPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDKKE 578
>ref|NP_001124340.1| lysyl-tRNA synthetase isoform 1 [Mus musculus].
Length = 624
Score = 968 bits (2502), Expect = 0.0
Identities = 477/537 (88%), Positives = 497/537 (92%)
Frame = +2
Query: 164 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 343
SEKQL+Q DNGV AEEE+LDPNQY+KIRSQAV QLKV+GEDPYPHKFHVDI
Sbjct: 72 SEKQLNQTASAPNHTA-DNGVGAEEETLDPNQYYKIRSQAVQQLKVTGEDPYPHKFHVDI 130
Query: 344 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 523
SLT FI+EYSHLQPGDHLTD+TLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 131 SLTQFIQEYSHLQPGDHLTDVTLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 190
Query: 524 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 703
KSEEEFV INNKLRRGDIIGV+G+PGKTKKGELSIIP EITLLSPCLHMLPHLHFGLKDK
Sbjct: 191 KSEEEFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDK 250
Query: 704 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 883
ETRYRQRYLDLILNDFVRQKFI+RSKIITYIRSFLD LGFLEIETPMMNIIPGGAVAKPF
Sbjct: 251 ETRYRQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPF 310
Query: 884 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1063
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 311 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 370
Query: 1064 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1243
YADYHDLMEITEKM+SGMVK ITGSYK+TYHPDGPEGQAYE+DFTPPFR+ISMVEELEKA
Sbjct: 371 YADYHDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKA 430
Query: 1244 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1423
LG+KLP+T+LFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI+PTFIC
Sbjct: 431 LGVKLPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFIC 490
Query: 1424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGD 1603
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGD
Sbjct: 491 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 550
Query: 1604 DEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
DEAMFIDE FCTALEYGLPPT GWG G ++ PAMKP DKKE
Sbjct: 551 DEAMFIDENFCTALEYGLPPTAGWGMGIDRLTMFLTDSNNIKEVLLFPAMKPEDKKE 607
>ref|NP_766232.1| aspartyl-tRNA synthetase, mitochondrial precursor [Mus musculus].
Length = 653
Score = 73.2 bits (178), Expect = 6e-13
Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 25/331 (7%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHLHFGLKD--KET---RYRQRYLDLILNDFVRQKF 766
K GE+ I LL+ C L F +KD K+T R + RYLDL F Q
Sbjct: 132 KMPTGEIEIKVKTAELLNAC----KKLPFEIKDFVKKTEALRLQYRYLDL--RSFQMQYN 185
Query: 767 I-IRSKIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPE 937
+ +RS+++ +R +L L GF++IETP + PGGA K F+ E + +P+
Sbjct: 186 LRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFLVPSREPGKFYSLPQSPQ 243
Query: 938 LYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSGM 1117
+ ++L+VGG+DR +++ R +R+EG PEFT + M++ + + +++V G+
Sbjct: 244 QFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSFVEQTGI----QRLVEGL 299
Query: 1118 VKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEEL--------EKALGMKLPD-TN 1270
+++ S+ P PF ++ E L + GMK+ D ++
Sbjct: 300 LQY---SWPGDKDP-----------LVTPFPSMTFAEALATYGTDKPDTRFGMKIVDVSD 345
Query: 1271 LFETEETRKILDDICVAK-AVECPPPRTTARLLDKLVGEFLEVTCIN-------PTFICD 1426
+F E R + D + + V+ A+ L K EF+ ++ P F+
Sbjct: 346 VFRNTELRFLQDALAKPQGTVKAICVHDGAKYLRKEDIEFIRKFAVHHFSQEVLPIFLNA 405
Query: 1427 HPQIMSPLAKWHRSKEGLTERFELFVMKKEI 1519
SP AK+ +E L + + +++I
Sbjct: 406 KKNWSSPFAKFIMEEERLELARSMEIQEEDI 436
>ref|NP_803228.2| aspartyl-tRNA synthetase, cytoplasmic isoform 1 [Mus musculus].
Length = 501
Score = 59.3 bits (142), Expect = 9e-09
Identities = 96/454 (21%), Positives = 176/454 (38%), Gaps = 26/454 (5%)
Frame = +2
Query: 401 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 580
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + II
Sbjct: 57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESII 114
Query: 581 GVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 700
V+G K + S ++ L ++++ P L L D
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATV 174
Query: 701 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 877
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 175 NQDTRLDNRVIDLRTSTS-QAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASEGGAN 233
Query: 878 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 1051
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 234 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLD 290
Query: 1052 FYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1228
MA+ YH+++E + + K + ++ + F P ++ E
Sbjct: 291 IEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYCE 350
Query: 1229 ELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1402
L + G+++ D T K+L + K T +LDK
Sbjct: 351 ALAMLREAGVEMDDEEDLST-PNEKLLGRLVKEKY------DTDFYVLDKY------PLA 397
Query: 1403 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1582
+ P + P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 398 VRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERA 442
Query: 1583 KARPAGDDEAMFIDETFCTALEYGLPPTGGWGHG 1684
++ + + + +G PP G G G
Sbjct: 443 LHHGIDLEKI----KAYIDSFRFGAPPHAGGGIG 472
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,782,776
Number of extensions: 1621398
Number of successful extensions: 5025
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5007
Number of HSP's successfully gapped: 5
Length of query: 591
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 484
Effective length of database: 12,403,707
Effective search space: 6003394188
Effective search space used: 6003394188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007277
(1775 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [... 1038 0.0
Alignment gi|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [... 1013 0.0
Alignment gi|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitocho... 74 3e-13
Alignment gi|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitocho... 74 3e-13
Alignment gi|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytopla... 57 3e-08
>ref|XP_003126904.2| PREDICTED: lysyl-tRNA synthetase isoform 1 [Sus scrofa].
Length = 597
Score = 1038 bits (2684), Expect = 0.0
Identities = 522/580 (90%), Positives = 525/580 (90%)
Frame = +2
Query: 35 MAAVQAAEVKVDGAEPKLSXXXXXXXXXXXXXXXXXXXXXXXXSEKQLSQXXXXXXXXXX 214
MAAVQAAEVKVDGAEPKLS SEKQLSQ
Sbjct: 1 MAAVQAAEVKVDGAEPKLSKNELKRRLKAEKKIAEKEAKQKELSEKQLSQATTAATNHTT 60
Query: 215 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 394
DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH
Sbjct: 61 DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDISLTHFIEEYSHLQPGDH 120
Query: 395 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 574
LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD
Sbjct: 121 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGD 180
Query: 575 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 754
IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV
Sbjct: 181 IIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFV 240
Query: 755 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 934
RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP
Sbjct: 241 RQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAP 300
Query: 935 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 1114
ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG
Sbjct: 301 ELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMVSG 360
Query: 1115 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 1294
MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR
Sbjct: 361 MVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKALGMKLPDTNLFETEETR 420
Query: 1295 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 1474
KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE
Sbjct: 421 KILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKE 480
Query: 1475 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGDDEAMFIDETFCTALEYG 1654
GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGDDEAMFIDETFCTALEYG
Sbjct: 481 GLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGDDEAMFIDETFCTALEYG 540
Query: 1655 LPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
LPPTGGWG G ++ PAMKP DKKE
Sbjct: 541 LPPTGGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKE 580
>ref|XP_003355791.1| PREDICTED: lysyl-tRNA synthetase isoform 2 [Sus scrofa].
Length = 625
Score = 1013 bits (2619), Expect = 0.0
Identities = 503/537 (93%), Positives = 506/537 (94%)
Frame = +2
Query: 164 SEKQLSQXXXXXXXXXXDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 343
SEKQLSQ DNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI
Sbjct: 72 SEKQLSQATTAATNHTTDNGVAAEEESLDPNQYFKIRSQAVHQLKVSGEDPYPHKFHVDI 131
Query: 344 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 523
SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY
Sbjct: 132 SLTHFIEEYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY 191
Query: 524 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 703
KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK
Sbjct: 192 KSEEEFVRINNKLRRGDIIGVQGSPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDK 251
Query: 704 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 883
ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF
Sbjct: 252 ETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAKPF 311
Query: 884 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 1063
ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA
Sbjct: 312 ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMA 371
Query: 1064 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 1243
YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA
Sbjct: 372 YADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVEELEKA 431
Query: 1244 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 1423
LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC
Sbjct: 432 LGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFIC 491
Query: 1424 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKARPAGD 1603
DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKA+ AGD
Sbjct: 492 DHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQAKAKAAGD 551
Query: 1604 DEAMFIDETFCTALEYGLPPTGGWGHGHRPRHYVSPRLP*LQGSASVPAMKPXDKKE 1774
DEAMFIDETFCTALEYGLPPTGGWG G ++ PAMKP DKKE
Sbjct: 552 DEAMFIDETFCTALEYGLPPTGGWGMGIDRVTMFLTDSNNIKEVLLFPAMKPEDKKE 608
>ref|XP_003357593.1| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 552
Score = 73.6 bits (179), Expect = 3e-13
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQKFIIRS 778
K GE+ I LL+ C + + +K ET R + RYLDL ++ +RS
Sbjct: 131 KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFVKKTETLRLQYRYLDL-RGAQMQYNLRLRS 189
Query: 779 KIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM 952
+++ +R +L L GF++IETP + PGGA K F+ E + +P+ + ++
Sbjct: 190 QMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFVVPSREPGKFYSLPQSPQQFKQL 247
Query: 953 LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1108
L+VGG+DR ++I R +R+EG PEFT + M++ D + + E ++
Sbjct: 248 LMVGGLDRYFQIARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 299
>ref|XP_003130365.2| PREDICTED: aspartyl-tRNA synthetase, mitochondrial-like [Sus scrofa].
Length = 651
Score = 73.6 bits (179), Expect = 3e-13
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 3/172 (1%)
Frame = +2
Query: 602 KTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKET-RYRQRYLDLILNDFVRQKFIIRS 778
K GE+ I LL+ C + + +K ET R + RYLDL ++ +RS
Sbjct: 131 KMPTGEIEIKVKTAKLLNSCKKLPFEIKDFVKKTETLRLQYRYLDL-RGAQMQYNLRLRS 189
Query: 779 KIITYIRSFLDAL-GFLEIETP-MMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHKM 952
+++ +R +L L GF++IETP + PGGA K F+ E + +P+ + ++
Sbjct: 190 QMVMKMREYLCNLHGFVDIETPTLFKRTPGGA--KEFVVPSREPGKFYSLPQSPQQFKQL 247
Query: 953 LVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYHDLMEITEKMV 1108
L+VGG+DR ++I R +R+EG PEFT + M++ D + + E ++
Sbjct: 248 LMVGGLDRYFQIARCYRDEGSRPDRQPEFTQIDIEMSFVDQTGIQSLIEGLL 299
>ref|XP_003133314.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like isoform 1 [Sus
scrofa].
Length = 501
Score = 57.0 bits (136), Expect = 3e-08
Identities = 94/454 (20%), Positives = 175/454 (38%), Gaps = 26/454 (5%)
Frame = +2
Query: 401 DITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFVRINNKLRRGDII 580
D + V R+H RA G K F LR + +Q + ++ S++ V+ + + I+
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVGDHASKQ-MVKFAANINKESIV 114
Query: 581 GVQGSPGKTKKGELSIIPYEITLLSPCLHML----PHLHFGLKD---------------- 700
V+G K + S ++ L ++++ P L L D
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEEEGRATV 174
Query: 701 -KETRYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDALGFLEIETPMMNIIPGGAVAK 877
++TR R +DL + + F ++S I R L GF+EI+TP + A
Sbjct: 175 NQDTRLDNRIIDLRTSTS-QAVFRLQSGICHLFRENLINKGFVEIQTPKIISAASEGGAN 233
Query: 878 PF-ITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCE 1051
F ++Y N Y+ +P+LY +M + ++V+ IG FR E + H EF +
Sbjct: 234 VFTVSYFKN---NAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGMD 290
Query: 1052 FYMAY-ADYHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYEIDFTPPFRKISMVE 1228
M + YH+++E + + K + ++ + F P ++ E
Sbjct: 291 IEMVFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQMVNKQFPCEPFKFLEPTLRLEYCE 350
Query: 1229 ELE--KALGMKLPDTNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTC 1402
L + G+++ D T K+L + K T +LDK
Sbjct: 351 ALAMLREAGIEMGDEEDLST-PNEKLLGRLVKEKY------DTDFYILDKY------PLA 397
Query: 1403 INPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPVRQRQLFEEQA 1582
+ P + P+ + +++F+ +EI + ++DP QL E+A
Sbjct: 398 VRPFYTMPDPR-----------NPKQSNSYDMFMRGEEILSGAQRIHDP----QLLTERA 442
Query: 1583 KARPAGDDEAMFIDETFCTALEYGLPPTGGWGHG 1684
++ + + + +G PP G G G
Sbjct: 443 LHHGIDLEKI----KAYIDSFRFGAPPHAGGGIG 472
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,730,503
Number of extensions: 1229557
Number of successful extensions: 3789
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3781
Number of HSP's successfully gapped: 5
Length of query: 591
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 486
Effective length of database: 8,729,747
Effective search space: 4242657042
Effective search space used: 4242657042
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007277
(1775 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 379 e-102
>Sscrofa_Chr06
|| Length = 157765593
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 514 caggaattataaatcagaagaagaatttgttcgtatcaataacaaactgcgccggggcga 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907783 caggaattataaatcagaagaagaatttgttcgtatcaataacaaactgcgccggggcga 11907842
Query: 574 cataattggagttcagggcagtcctgggaaaaccaagaagggtgagctgagcatcattcc 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907843 cataattggagttcagggcagtcctgggaaaaccaagaagggtgagctgagcatcattcc 11907902
Query: 634 ctatgagatcacgctgctgtctccttgcttgcacatgttacctcatcttcactttggcct 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907903 ctatgagatcacgctgctgtctccttgcttgcacatgttacctcatcttcactttggcct 11907962
Query: 694 caaggacaagg 704
|||||||||||
Sbjct: 11907963 caaggacaagg 11907973
Score = 351 bits (177), Expect = 8e-94
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1110 cagggatggtgaagcacattacaggcagttacaaggttacctaccatccagatggcccag 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911574 cagggatggtgaagcacattacaggcagttacaaggttacctaccatccagatggcccag 11911633
Query: 1170 agggtcaagcctatgagattgacttcacgcccccgttccggaaaatcagcatggtggaag 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911634 agggtcaagcctatgagattgacttcacgcccccgttccggaaaatcagcatggtggaag 11911693
Query: 1230 agcttgagaaagccctgggaatgaagctgccggacactaacctctttgaaacggaag 1286
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911694 agcttgagaaagccctgggaatgaagctgccggacactaacctctttgaaacggaag 11911750
Score = 341 bits (172), Expect = 8e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 257 caatacttcaaaatccgcagccaggcagtgcaccaactgaaggtcagtggggaagaccca 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904070 caatacttcaaaatccgcagccaggcagtgcaccaactgaaggtcagtggggaagaccca 11904129
Query: 317 tacccacacaagttccacgtcgacatctcgctcactcacttcatcgaagaatacagtcac 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904130 tacccacacaagttccacgtcgacatctcgctcactcacttcatcgaagaatacagtcac 11904189
Query: 377 ctgcagcctggggaccacctgactgacatcaccttaaaggtggcaggtagga 428
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11904190 ctgcagcctggggaccacctgactgacatcaccttaaaggtggcaggtagga 11904241
Score = 329 bits (166), Expect = 3e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 948 agatgctggtggtcggtggtattgaccgggtgtatgaaattggacgccagttccggaatg 1007
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911302 agatgctggtggtcggtggtattgaccgggtgtatgaaattggacgccagttccggaatg 11911361
Query: 1008 aaggaatcgatttgactcacaatcccgagttcaccacctgtgaattctacatggcctatg 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911362 aaggaatcgatttgactcacaatcccgagttcaccacctgtgaattctacatggcctatg 11911421
Query: 1068 cggactaccacgatctcatggaaatcacagagaagatggtttcagg 1113
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911422 cggactaccacgatctcatggaaatcacagagaagatggtttcagg 11911467
Score = 317 bits (160), Expect = 1e-83
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 97 tgagctaaagagacgccttaaagctgagaagaaaatagcagagaaggaggccaagcagaa 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903068 tgagctaaagagacgccttaaagctgagaagaaaatagcagagaaggaggccaagcagaa 11903127
Query: 157 ggagctcagtgaaaaacagctaagccaggccaccactgctgccaccaaccacaccactga 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903128 ggagctcagtgaaaaacagctaagccaggccaccactgctgccaccaaccacaccactga 11903187
Query: 217 caatggcgttgctgcggaggaggagagcctggacccaaat 256
||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903188 caatggcgttgctgcggaggaggagagcctggacccaaat 11903227
Score = 256 bits (129), Expect = 4e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1458 ggcaccgctctaaagagggtctgaccgaacgctttgagctctttgtcatgaaaaaggaaa 1517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11912990 ggcaccgctctaaagagggtctgaccgaacgctttgagctctttgtcatgaaaaaggaaa 11913049
Query: 1518 tatgcaacgcctacacggagctgaatgaccctgtgcgacagcggcagctttttgaagaac 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11913050 tatgcaacgcctacacggagctgaatgaccctgtgcgacagcggcagctttttgaagaac 11913109
Query: 1578 aggccaagg 1586
|||||||||
Sbjct: 11913110 aggccaagg 11913118
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Plus
Query: 702 aggaaacacggtatcgtcagcgatacttggacttgatcctgaatgacttcgtgaggcaga 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11908057 aggaaacacggtatcgtcagcgatacttggacttgatcctgaatgacttcgtgaggcaga 11908116
Query: 762 aatttatcatccgctccaagatcatcacatacataagaagtttcttggatgcgttgggat 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11908117 aatttatcatccgctccaagatcatcacatacataagaagtttcttggatgcgttgggat 11908176
Query: 822 tcctagag 829
||||||||
Sbjct: 11908177 tcctagag 11908184
Score = 242 bits (122), Expect = 6e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 828 agattgaaactcccatgatgaacatcatcccagggggagctgtggccaagccttttatca 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11910018 agattgaaactcccatgatgaacatcatcccagggggagctgtggccaagccttttatca 11910077
Query: 888 cctaccacaacgagctggacatgaatttatacatgagaattgctccagagctctaccata 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11910078 cctaccacaacgagctggacatgaatttatacatgagaattgctccagagctctaccata 11910137
Query: 948 ag 949
||
Sbjct: 11910138 ag 11910139
Score = 218 bits (110), Expect = 8e-54
Identities = 123/126 (97%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 1584 aggccaggcccgctggcgatgatgaggccatgttcatagacgaaaccttctgcaccgccc 1643
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11913742 aggccaaggccgctggcgatgatgaggccatgttcatagacgaaaccttctgcaccgccc 11913801
Query: 1644 tggaatatgggctgccccccacaggtggctgggggcatgggcatcgaccgcgtcactatg 1703
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 11913802 tggaatatgggctgccccccacaggtggct-ggggcatgggcatcgaccgcgtcactatg 11913860
Query: 1704 tttctc 1709
||||||
Sbjct: 11913861 tttctc 11913866
Score = 192 bits (97), Expect = 5e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 421 aggtaggatccatgccaaaagagcttctgggggaaagctcatcttctatgaccttcgagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11907343 aggtaggatccatgccaaaagagcttctgggggaaagctcatcttctatgaccttcgagg 11907402
Query: 481 agagggggtcaagttgcaagtcatggccaattccagg 517
|||||||||||||||||||||||||||||||||||||
Sbjct: 11907403 agagggggtcaagttgcaagtcatggccaattccagg 11907439
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1369 taagcttgtcggcgagttcctggaagtaacgtgcatcaatcctacattcatctgtgatca 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11912321 taagcttgtcggcgagttcctggaagtaacgtgcatcaatcctacattcatctgtgatca 11912380
Query: 1429 cccgcagataatgagccctctggccaaatgg 1459
|||||||||||||||||||||||||||||||
Sbjct: 11912381 cccgcagataatgagccctctggccaaatgg 11912411
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 9 ctctttaggtccggccctcgggaaagatggctgcggtacaggcggctgaagttaaagtgg 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11898440 ctctttaggtccggccctcgggaaagatggctgcggtacaggcggctgaagttaaagtgg 11898499
Query: 69 acggcgcggagccgaaactgagcaaaaa 96
||||||||||||||||||||||||||||
Sbjct: 11898500 acggcgcggagccgaaactgagcaaaaa 11898527
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1285 agaaactcgcaaaattcttgacgatatctgtgtggcaaaagccgtggaatgccctccacc 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11911908 agaaactcgcaaaattcttgacgatatctgtgtggcaaaagccgtggaatgccctccacc 11911967
Query: 1345 ccggaccacagccaggctccttgataag 1372
||||||||||||||||||||||||||||
Sbjct: 11911968 ccggaccacagccaggctccttgataag 11911995
Score = 73.8 bits (37), Expect = 3e-10
Identities = 46/48 (95%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 1729 aggaagtgcttctgtt-cccgccatgaaacctgnagacaagaaggaga 1775
|||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 11914366 aggaagtgcttctgtttcccgccatgaaacctgaagacaagaaggaga 11914413
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,344,641
Number of extensions: 260
Number of successful extensions: 260
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 14
Length of query: 1775
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1753
Effective length of database: 2,808,408,574
Effective search space: 4923140230222
Effective search space used: 4923140230222
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)