Animal-Genome cDNA 20110601C-007279

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007279
         (1730 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001017934.2| T-complex protein 1 subunit gamma [Bos tauru...  1007   0.0  
Alignment   gi|NP_001033283.1| T-complex protein 1 subunit delta [Bos tauru...   298   1e-80
Alignment   gi|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsil...   294   2e-79
Alignment   gi|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subun...   294   2e-79
Alignment   gi|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subun...   294   2e-79
Alignment   gi|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].     285   7e-77
Alignment   gi|NP_001033175.1| T-complex protein 1 subunit alpha [Bos tauru...   279   5e-75
Alignment   gi|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].    263   4e-70
Alignment   gi|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taur...   247   3e-65
Alignment   gi|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].    224   2e-58

>ref|NP_001017934.2| T-complex protein 1 subunit gamma [Bos taurus].
          Length = 545

 Score = 1007 bits (2604), Expect = 0.0
 Identities = 515/520 (99%), Positives = 517/520 (99%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 60

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
            NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 61   NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 120

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYRKALDDMISTLKKIS PVDT+NRD MLNIINSSITTKVISRWSSLACNIALDAV
Sbjct: 121  VVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAV 180

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 181  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII LKPDVVITEKGISDLA
Sbjct: 241  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 300

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREED+GTGAGLLEIKKIGDEYF
Sbjct: 301  QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYF 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 361  TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV
Sbjct: 421  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 480

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 481  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 520


>ref|NP_001033283.1| T-complex protein 1 subunit delta [Bos taurus].
          Length = 542

 Score =  298 bits (763), Expect = 1e-80
 Identities = 174/511 (34%), Positives = 296/511 (57%), Gaps = 6/511 (1%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R+   +++  NI+AAK +AD IRT LGPK M KM+ D  G + +TNDG  IL+++QV HP
Sbjct: 30   RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP 89

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AA+ ++E+S+ QD E GDGTTSV+I+AG +L      L++ +HPT++  +++KAL+  I 
Sbjct: 90   AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 149

Query: 575  TLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDI 754
             L  +S P + ++R+ +LN   +S+ +KV+S++SSL   +++DAV  V  +      +D+
Sbjct: 150  ILTDMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKV-IDPATATSVDL 208

Query: 755  KKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTD 934
            +    V+K+ GG I+D  ++ G+++ + V +  + R ++  +I L+   L   K +    
Sbjct: 209  RDIKIVKKL-GGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQ 266

Query: 935  IEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGI-----SDLAQHYLMRANIT 1099
            I ++      R+L+ E  YI  L + I     +V++ +K I     SDLA H+L +  I 
Sbjct: 267  IVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 326

Query: 1100 AIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDP- 1276
             ++ + + D   I +  G + V+  ++   + +G+     E+   G      IT C  P 
Sbjct: 327  VVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPG 386

Query: 1277 KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 1456
            K  TI++RG++K ++ E ER++ DA+ V R ++    L+ GGGA E+ +A  LTE S+ +
Sbjct: 387  KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTL 446

Query: 1457 TGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVD 1636
            +G+E +  RA A A+EVIP TL +N G + I  +T LR +H Q   +T G+N   G + +
Sbjct: 447  SGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-KTTGINVRKGGISN 505

Query: 1637 MKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + E  + +PL V +     A ET   +L+ID
Sbjct: 506  ILEEQVVQPLLVSVSALTLATETVRSILKID 536


>ref|NP_001029767.2| chaperonin containing TCP1, subunit 5 (epsilon) [Bos taurus].
          Length = 541

 Score =  294 bits (752), Expect = 2e-79
 Identities = 175/522 (33%), Positives = 300/522 (57%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ ++T LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD  N + ++    +++ +KV++        IA++AV
Sbjct: 134  ADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   +  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 194  LTV--ADMQRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++T  EDF  + + E+E  +++   I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++ ++ A+R V   +   IA A G RIV R  EL  E +G  AGL++    G   +
Sbjct: 311  NHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVKEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E++ 
Sbjct: 370  KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E     
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DMK   + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|XP_002696484.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
            taurus].
          Length = 541

 Score =  294 bits (752), Expect = 2e-79
 Identities = 175/522 (33%), Positives = 300/522 (57%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ ++T LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD  N + ++    +++ +KV++        IA++AV
Sbjct: 134  ADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   +  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 194  LTV--ADMQRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++T  EDF  + + E+E  +++   I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++ ++ A+R V   +   IA A G RIV R  EL  E +G  AGL++    G   +
Sbjct: 311  NHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVKEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E++ 
Sbjct: 370  KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E     
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DMK   + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|XP_001789333.1| PREDICTED: chaperonin containing TCP1, subunit 5 (epsilon) [Bos
            taurus].
          Length = 541

 Score =  294 bits (752), Expect = 2e-79
 Identities = 175/522 (33%), Positives = 300/522 (57%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ ++T LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD  N + ++    +++ +KV++        IA++AV
Sbjct: 134  ADGYEQAARIAIEHLDKISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   +  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 194  LTV--ADMQRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++T  EDF  + + E+E  +++   I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++ ++ A+R V   +   IA A G RIV R  EL  E +G  AGL++    G   +
Sbjct: 311  NHLLLQNDLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVKEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E++ 
Sbjct: 370  KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E     
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DMK   + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGTNDMKHQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|NP_001039636.1| T-complex protein 1 subunit eta [Bos taurus].
          Length = 543

 Score =  285 bits (730), Expect = 7e-77
 Identities = 168/522 (32%), Positives = 278/522 (53%), Gaps = 7/522 (1%)
 Frame = +2

Query: 185  PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 364
            PV++L + T    G      NI+A + IA+ +RT LGP+ M K+++D  G   ++NDG  
Sbjct: 5    PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 64

Query: 365  ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 544
            IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L   + ++E+ +HP ++I A
Sbjct: 65   ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 124

Query: 545  YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            +R A    ++ +K+I+  V        R ++     +++++K+IS+  +    + +DAV 
Sbjct: 125  FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 883
             +        ++   K   ++K+ GG +E+S ++ GV   K  ++       K   NP I
Sbjct: 185  MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 237

Query: 884  VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 1063
             LL+  LE K  +   +I +   ED+  I+  E   +    E I H    VV+++  I D
Sbjct: 238  ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGD 297

Query: 1064 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 1243
            +A  Y    ++    RV + D  R   ACG  I +    L  + +G    + E  +IG E
Sbjct: 298  VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 356

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
             + F T C   K CTI+LRG +++ + E ER+L DA+ + R  + +  +V GGGA EM +
Sbjct: 357  RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            +  L + S+ + G +Q    A A+ALE+IPR L  N G     +L  LRA+H Q     +
Sbjct: 417  SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM-WY 475

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GV+  T  + D  E  +WEP  V++     A E A L++ +D
Sbjct: 476  GVDINTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVD 517


>ref|NP_001033175.1| T-complex protein 1 subunit alpha [Bos taurus].
          Length = 556

 Score =  279 bits (714), Expect = 5e-75
 Identities = 175/520 (33%), Positives = 288/520 (55%), Gaps = 15/520 (2%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 11   RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 70

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 71   AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 130

Query: 575  TL-KKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 748
             + + +    D   RD ++N   +S+++KVI        N+ +DAV  +++ +  G+   
Sbjct: 131  YISENLIINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRY 190

Query: 749  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 928
             +     V K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 191  PVNS-INVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 249

Query: 929  TDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIR 1108
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y + A   A+R
Sbjct: 250  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVR 309

Query: 1109 RVRKTDNNRIARACGARIVSRPEELREED------IGTGAGLLEIKKIGDEYFTFITECK 1270
            RV K D  RIA+A GA ++S    L  E+      +G    +++ ++I D+    I   K
Sbjct: 310  RVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQ-ERICDDELILIKNTK 368

Query: 1271 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSK 1450
               + +++LRGA+  +  E+ER+L DA+ V + VL    +VPGGGA E A++  L   + 
Sbjct: 369  ARTSASVILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYAT 428

Query: 1451 AMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGV 1609
            +M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G+
Sbjct: 429  SMGSREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 488

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            +   G   D K+ G++EP  VK+++ K A E A+ +LRID
Sbjct: 489  DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRID 528


>ref|NP_001029714.1| T-complex protein 1 subunit zeta [Bos taurus].
          Length = 531

 Score =  263 bits (672), Expect = 4e-70
 Identities = 148/504 (29%), Positives = 285/504 (56%), Gaps = 9/504 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI+AA+ + D++RT LGPK  MKML+   G I +T DGN +L E+Q+QHP A  + +++ 
Sbjct: 23   NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 82

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A +  +  L+++    +
Sbjct: 83   AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE 142

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 784
              +R+ ++++  +S+ TKV +  + +     +D++  ++ ++   + ID+     + ++ 
Sbjct: 143  M-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQD---EPIDL-FMVEIMEMK 197

Query: 785  GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 964
                 D+ ++RG++++    HP M++ +++  I+  + SLEY+K E  +       E+  
Sbjct: 198  HKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEERE 257

Query: 965  RILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLAQHYLMRANITAIRRVR 1117
            ++++ E ++I+   + II LK           VVI +KGI   +   L +  I A+RR +
Sbjct: 258  KLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAK 317

Query: 1118 KTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 1297
            + +  R+  ACG   ++  ++L  + +G  AGL+    +G+E FTFI +C +P++ T+L+
Sbjct: 318  RRNMERLTLACGGIALNSLDDLNPDCLG-HAGLVYEYTLGEEKFTFIEKCNNPRSVTLLI 376

Query: 1298 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWP 1477
            +G +K  L++++  ++D ++  +N + D  +VPG GA E+A+A AL +   ++ G  Q  
Sbjct: 377  KGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLG 436

Query: 1478 YRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIW 1657
             +A A AL +IP+ L QN G      L  ++A+H+ E+ +  GV+  TG  +   E GIW
Sbjct: 437  VQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHS-ESGQLVGVDLNTGEPMVAAEAGIW 495

Query: 1658 EPLAVKLQTYKTAVETAVLLLRID 1729
            +   VK Q   +    A  +L +D
Sbjct: 496  DNYCVKKQLLHSCTVIATNILLVD 519


>ref|NP_001029814.1| T-complex protein 1 subunit zeta-2 [Bos taurus].
          Length = 531

 Score =  247 bits (630), Expect = 3e-65
 Identities = 147/520 (28%), Positives = 280/520 (53%), Gaps = 12/520 (2%)
 Frame = +2

Query: 206  NTKRESGRK--VQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREI 379
            N+K E  R     + NI AA+ + D++RT LGPK  MKML+   G + +T DGN +L E+
Sbjct: 8    NSKAEVARAQAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEM 67

Query: 380  QVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKAL 559
            Q+QHP A  + +++  QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A 
Sbjct: 68   QIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAK 127

Query: 560  DDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGR 739
               +  L+++    +   R++ L++  +S+ TKV  + + +     +D+V  ++     R
Sbjct: 128  IKALEVLEQVKIKKEM-KREIHLDVARTSLQTKVHPQLADVLTEAVVDSVLAIR-----R 181

Query: 740  KEIDIKKY-ARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK 916
                I  +   + ++      D+ +++G++++    HP M++ + +  I+  + SLEY+K
Sbjct: 182  PNYPIDLFMVEIMEMKHKSETDTKLIKGLVLDHGARHPDMKKRVDDAFILTCNVSLEYEK 241

Query: 917  GESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLA 1069
             E  +       E+  ++++ E ++I+   + II LK           VVI +KGI   +
Sbjct: 242  TEVSSGFFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFS 301

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
               L +  I A+RR ++ +  R++ ACG   V+  E+L  + +G  AGL+    +G+E +
Sbjct: 302  LDALAKHGILALRRAKRRNMERLSLACGGVAVNSVEDLSVDCLG-HAGLVYEYTLGEEKY 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFI +C +P++ T+L++G +K  L++++  ++D ++  +N + D  +VPG GA E+ +A 
Sbjct: 361  TFIEDCINPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVIAE 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            AL      + G  +   +A A AL +IP+ L QN G      L  ++A+H+    +  G+
Sbjct: 421  ALVTYKHTIQGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQAEHSNSK-QPVGI 479

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            +  TG  +   + G+W+   VK Q   +    A  +L +D
Sbjct: 480  DLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVD 519


>ref|NP_001029411.1| T-complex protein 1 subunit beta [Bos taurus].
          Length = 535

 Score =  224 bits (571), Expect = 2e-58
 Identities = 158/529 (29%), Positives = 273/529 (51%), Gaps = 8/529 (1%)
 Frame = +2

Query: 167  AMMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGI 340
            A +   PV +       E     +  +   A  I D++++ LGPK M K+LL       +
Sbjct: 2    ASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASL 61

Query: 341  VMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQM 520
            ++TNDG  IL+ I V +PAAK ++++SR QD+EVGDGTTSV +LA E+L  AE  + +++
Sbjct: 62   MVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKI 121

Query: 521  HPTVVISAYRKALDDMISTLKKISTPVDTNN-----RDMMLNIINSSITTKVISRWSSLA 685
            HP  +I+ +R+A       L  +++ VD  +     R  ++NI  +++++K+++      
Sbjct: 122  HPQTIIAGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHF 179

Query: 686  CNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRY 865
              +A++AV  ++   N      IKK        GG + DS +  G +++K +   + +R 
Sbjct: 180  TKLAVEAVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR- 231

Query: 866  IKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVI 1042
            I+N +I++ ++ ++  K +   + + +        I   E+E +++  E I+    +  I
Sbjct: 232  IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFI 291

Query: 1043 TEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLE 1222
              + I +  +     A + AI         R+A   G  I S  +      +G+   L+E
Sbjct: 292  NRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGS-CKLIE 350

Query: 1223 IKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGG 1402
               IG++     +     +ACTI+LRGA+++IL E ER+L DA+ V    + D + V GG
Sbjct: 351  EVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGG 410

Query: 1403 GASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHT 1582
            G SEM +AHA+T+ +    G E     + A+AL ++P  +  N G  +  L+  LRA H+
Sbjct: 411  GCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS 470

Query: 1583 QENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
             E   T G++ + GT+ DM  LGI E   VK Q   +A E A ++LR+D
Sbjct: 471  -EGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAAEAAEVILRVD 518


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,497,107
Number of extensions: 2207202
Number of successful extensions: 9862
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 9779
Number of HSP's successfully gapped: 27
Length of query: 576
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 468
Effective length of database: 14,107,870
Effective search space: 6602483160
Effective search space used: 6602483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007279
         (1730 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_537245.2| PREDICTED: similar to chaperonin containing TCP...  1009   0.0  
Alignment   gi|XP_864287.1| PREDICTED: similar to chaperonin containing TCP...   956   0.0  
Alignment   gi|XP_864328.1| PREDICTED: similar to chaperonin containing TCP...   922   0.0  
Alignment   gi|XP_864308.1| PREDICTED: similar to chaperonin containing TCP...   916   0.0  
Alignment   gi|XP_864265.1| PREDICTED: similar to chaperonin containing TCP...   861   0.0  
Alignment   gi|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsi...   301   1e-81
Alignment   gi|XP_848303.1| PREDICTED: similar to T-complex protein 1, epsi...   298   8e-81
Alignment   gi|XP_539390.2| PREDICTED: similar to T-complex protein 1, delt...   298   1e-80
Alignment   gi|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta ...   283   3e-76
Alignment   gi|XP_852889.1| PREDICTED: similar to T-complex protein 1, eta ...   283   3e-76

>ref|XP_537245.2| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
            isoform 1 [Canis familiaris].
          Length = 544

 Score = 1009 bits (2610), Expect = 0.0
 Identities = 513/519 (98%), Positives = 518/519 (99%)
 Frame = +2

Query: 173  MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTN 352
            MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTN
Sbjct: 1    MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTN 60

Query: 353  DGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV 532
            DGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV
Sbjct: 61   DGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV 120

Query: 533  VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTK ISRWSSLACNIALDAV+
Sbjct: 121  VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKAISRWSSLACNIALDAVR 180

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 892
            TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL
Sbjct: 181  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 240

Query: 893  DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 1072
            DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ
Sbjct: 241  DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 300

Query: 1073 HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFT 1252
            HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAG+LEIKKIGDEYFT
Sbjct: 301  HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGVLEIKKIGDEYFT 360

Query: 1253 FITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 1432
            FITECKDPKACTILLRGASKE+LSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA
Sbjct: 361  FITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 420

Query: 1433 LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 1612
            LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN
Sbjct: 421  LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 480

Query: 1613 GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 481  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 519


>ref|XP_864287.1| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
            isoform 4 [Canis familiaris].
          Length = 523

 Score =  956 bits (2471), Expect = 0.0
 Identities = 492/519 (94%), Positives = 497/519 (95%)
 Frame = +2

Query: 173  MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTN 352
            MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMK             
Sbjct: 1    MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMK------------- 47

Query: 353  DGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV 532
                    IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV
Sbjct: 48   --------IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV 99

Query: 533  VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTK ISRWSSLACNIALDAV+
Sbjct: 100  VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKAISRWSSLACNIALDAVR 159

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 892
            TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL
Sbjct: 160  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 219

Query: 893  DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 1072
            DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ
Sbjct: 220  DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 279

Query: 1073 HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFT 1252
            HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAG+LEIKKIGDEYFT
Sbjct: 280  HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGVLEIKKIGDEYFT 339

Query: 1253 FITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 1432
            FITECKDPKACTILLRGASKE+LSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA
Sbjct: 340  FITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 399

Query: 1433 LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 1612
            LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN
Sbjct: 400  LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 459

Query: 1613 GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 460  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 498


>ref|XP_864328.1| PREDICTED: similar to chaperonin containing TCP1, subunit 3 (gamma)
            isoform 6 [Canis familiaris].
          Length = 499

 Score =  922 bits (2383), Expect = 0.0
 Identities = 468/474 (98%), Positives = 473/474 (99%)
 Frame = +2

Query: 308  MKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEML 487
            MKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEML
Sbjct: 1    MKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEML 60

Query: 488  SVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVIS 667
            SVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTK IS
Sbjct: 61   SVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKAIS 120

Query: 668  RWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTH 847
            RWSSLACNIALDAV+TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTH
Sbjct: 121  RWSSLACNIALDAVRTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTH 180

Query: 848  PRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLK 1027
            PRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLK
Sbjct: 181  PRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLK 240

Query: 1028 PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTG 1207
            PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTG
Sbjct: 241  PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTG 300

Query: 1208 AGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQ 1387
            AG+LEIKKIGDEYFTFITECKDPKACTILLRGASKE+LSEVERNLQDAMQVCRNVLLDPQ
Sbjct: 301  AGVLEIKKIGDEYFTFITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQ 360

Query: 1388 LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSL 1567
            LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSL
Sbjct: 361  LVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSL 420

Query: 1568 RAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            RAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 421  RAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 474


>ref|XP_864308.1| PREDICTED: similar to chaperonin containing TCP1, subunit 3 isoform c
            isoform 5 [Canis familiaris].
          Length = 506

 Score =  916 bits (2367), Expect = 0.0
 Identities = 475/519 (91%), Positives = 480/519 (92%)
 Frame = +2

Query: 173  MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTN 352
            MGHRPVLVLSQNTKRESGRKVQSGNINAAK                              
Sbjct: 1    MGHRPVLVLSQNTKRESGRKVQSGNINAAK------------------------------ 30

Query: 353  DGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV 532
                    IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV
Sbjct: 31   --------IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTV 82

Query: 533  VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTK ISRWSSLACNIALDAV+
Sbjct: 83   VISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKAISRWSSLACNIALDAVR 142

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 892
            TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL
Sbjct: 143  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLL 202

Query: 893  DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 1072
            DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ
Sbjct: 203  DSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQ 262

Query: 1073 HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFT 1252
            HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAG+LEIKKIGDEYFT
Sbjct: 263  HYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGVLEIKKIGDEYFT 322

Query: 1253 FITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 1432
            FITECKDPKACTILLRGASKE+LSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA
Sbjct: 323  FITECKDPKACTILLRGASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHA 382

Query: 1433 LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 1612
            LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN
Sbjct: 383  LTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVN 442

Query: 1613 GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 443  GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 481


>ref|XP_864265.1| PREDICTED: similar to chaperonin containing TCP1, subunit 3 isoform c
            isoform 3 [Canis familiaris].
          Length = 478

 Score =  861 bits (2225), Expect = 0.0
 Identities = 437/443 (98%), Positives = 442/443 (99%)
 Frame = +2

Query: 401  KSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL 580
            KSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL
Sbjct: 11   KSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL 70

Query: 581  KKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKK 760
            KKISTPVDTNNRDMMLNIINSSITTK ISRWSSLACNIALDAV+TVQFEENGRKEIDIKK
Sbjct: 71   KKISTPVDTNNRDMMLNIINSSITTKAISRWSSLACNIALDAVRTVQFEENGRKEIDIKK 130

Query: 761  YARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIE 940
            YARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIE
Sbjct: 131  YARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIE 190

Query: 941  ITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRK 1120
            ITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRK
Sbjct: 191  ITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRK 250

Query: 1121 TDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILLR 1300
            TDNNRIARACGARIVSRPEELRE+D+GTGAG+LEIKKIGDEYFTFITECKDPKACTILLR
Sbjct: 251  TDNNRIARACGARIVSRPEELREDDVGTGAGVLEIKKIGDEYFTFITECKDPKACTILLR 310

Query: 1301 GASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 1480
            GASKE+LSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY
Sbjct: 311  GASKEVLSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPY 370

Query: 1481 RAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWE 1660
            RAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWE
Sbjct: 371  RAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWE 430

Query: 1661 PLAVKLQTYKTAVETAVLLLRID 1729
            PLAVKLQTYKTAVETAVLLLRID
Sbjct: 431  PLAVKLQTYKTAVETAVLLLRID 453


>ref|XP_855829.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
            (TCP-1-epsilon) (CCT-epsilon) isoform 2 [Canis
            familiaris].
          Length = 541

 Score =  301 bits (772), Expect = 1e-81
 Identities = 177/522 (33%), Positives = 303/522 (58%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ +RT LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD  + + ++    +++ +KV S+   +   IA++AV
Sbjct: 134  ADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVFSKKKDIMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   +  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + ++N +I +
Sbjct: 194  LTV--ADMQRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVENAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++T  ED+  + + E+E  +++ + I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++ N+ A+R V   +   IA A G RIV R  EL  E +G  AGL++    G   +
Sbjct: 311  NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGF-AGLVKEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A T+ +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A 
Sbjct: 370  KMLVIEQCKNSRAVTVFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E     
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DMK+  + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|XP_848303.1| PREDICTED: similar to T-complex protein 1, epsilon subunit
            (TCP-1-epsilon) (CCT-epsilon) isoform 1 [Canis
            familiaris].
          Length = 541

 Score =  298 bits (764), Expect = 8e-81
 Identities = 176/522 (33%), Positives = 302/522 (57%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ +RT LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD  + + ++    +++ +KV++        IA++AV
Sbjct: 134  ADGYEQAARIAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   +  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + ++N +I +
Sbjct: 194  LTV--ADMQRRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVENAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++T  ED+  + + E+E  +++ + I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++ N+ A+R V   +   IA A G RIV R  EL  E +G  AGL++    G   +
Sbjct: 311  NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGF-AGLVKEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A T+ +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E+A 
Sbjct: 370  KMLVIEQCKNSRAVTVFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIAC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E     
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DMK+  + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|XP_539390.2| PREDICTED: similar to T-complex protein 1, delta subunit
            (TCP-1-delta) (CCT-delta) (A45) [Canis familiaris].
          Length = 539

 Score =  298 bits (763), Expect = 1e-80
 Identities = 174/511 (34%), Positives = 297/511 (58%), Gaps = 6/511 (1%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R+   +++  NI+AAK +AD IRT LGPK M KM+ D  G + +TNDG  IL+++QV HP
Sbjct: 27   RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP 86

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AA+ ++E+S+ QD E GDGTTSV+I+AG +L      L++ +HPT++  +++KAL+  I 
Sbjct: 87   AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146

Query: 575  TLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDI 754
             L  +S PV+ ++R+ +LN   +S+ +KV+S++SSL   ++++AV  V  +      +D+
Sbjct: 147  ILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV-IDPATATSVDL 205

Query: 755  KKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTD 934
            +    V+K+ GG I+D  ++ G+++ + V +  + R ++  +I L+   L   K +    
Sbjct: 206  RDIKIVKKL-GGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQ 263

Query: 935  IEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGI-----SDLAQHYLMRANIT 1099
            I ++      R+L+ E  YI  L + I     +V++ +K I     SDLA H+L +  I 
Sbjct: 264  IVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323

Query: 1100 AIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDP- 1276
             ++ + + D   I +  G + V+  ++   + +G+     E+   G      IT C  P 
Sbjct: 324  VVKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCTSPG 383

Query: 1277 KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 1456
            K  TI++RG++K ++ E ER++ DA+ V R ++    L+ GGGA E+ +A  LTE S+ +
Sbjct: 384  KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTL 443

Query: 1457 TGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVD 1636
            +G+E +  RA A A+EVIP TL +N G + I  +T LR +H Q   +T G+N   G + +
Sbjct: 444  SGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-KTTGINVRKGGISN 502

Query: 1637 MKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + E  + +PL V +     A ET   +L+ID
Sbjct: 503  ILEELVVQPLLVSVSALTLATETVRSILKID 533


>ref|XP_848245.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
            (CCT-eta) (HIV-1 Nef interacting protein) isoform 1
            [Canis familiaris].
          Length = 543

 Score =  283 bits (725), Expect = 3e-76
 Identities = 168/522 (32%), Positives = 277/522 (53%), Gaps = 7/522 (1%)
 Frame = +2

Query: 185  PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 364
            PV++L + T    G      NI+A + IA+ +RT LGP+ M K+++D  G   ++NDG  
Sbjct: 5    PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 64

Query: 365  ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 544
            IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L   + ++E+ +HP ++I A
Sbjct: 65   ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 124

Query: 545  YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            +R A    ++ +K+I+  V        R ++     +++++K+IS+  +    + +DAV 
Sbjct: 125  FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVI 184

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 883
             +        E+   K   ++K+ GG +E+S ++ GV   K  ++       K   NP I
Sbjct: 185  MLD-------ELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMI 237

Query: 884  VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 1063
             LL+  LE K  +   +I +   ED+  I+  E   +    E I H    VV+++  I D
Sbjct: 238  ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGD 297

Query: 1064 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 1243
            +A  Y    ++    RV + D  R   ACG  I +    L  + +G    + E  +IG E
Sbjct: 298  VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGR-CQVFEETQIGGE 356

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
             + F T C   K CTI+LRG +++ + E ER+L DA+ + R  + +  +V GGGA EM +
Sbjct: 357  RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            +  L + S+ + G +Q    A A+ALE+IPR L  N G     +L  LRA+H Q     +
Sbjct: 417  SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM-WY 475

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GV+     + D  E  +WEP  V++     A E A L++ +D
Sbjct: 476  GVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVD 517


>ref|XP_852889.1| PREDICTED: similar to T-complex protein 1, eta subunit (TCP-1-eta)
            (CCT-eta) (HIV-1 Nef interacting protein) isoform 2
            [Canis familiaris].
          Length = 543

 Score =  283 bits (725), Expect = 3e-76
 Identities = 168/522 (32%), Positives = 277/522 (53%), Gaps = 7/522 (1%)
 Frame = +2

Query: 185  PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 364
            PV++L + T    G      NI+A + IA+ +RT LGP+ M K+++D  G   ++NDG  
Sbjct: 5    PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 64

Query: 365  ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 544
            IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L   + ++E+ +HP ++I A
Sbjct: 65   ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 124

Query: 545  YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            +R A    ++ +K+I+  V        R ++     +++++K+IS+  +    + +DAV 
Sbjct: 125  FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVI 184

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 883
             +        E+   K   ++K+ GG +E+S ++ GV   K  ++       K   NP I
Sbjct: 185  MLD-------ELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYNNPMI 237

Query: 884  VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 1063
             LL+  LE K  +   +I +   ED+  I+  E   +    E I H    VV+++  I D
Sbjct: 238  ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIHHSGAKVVLSKLPIGD 297

Query: 1064 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 1243
            +A  Y    ++    RV + D  R   ACG  I +    L  + +G    + E  +IG E
Sbjct: 298  VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGR-CQVFEETQIGGE 356

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
             + F T C   K CTI+LRG +++ + E ER+L DA+ + R  + +  +V GGGA EM +
Sbjct: 357  RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            +  L + S+ + G +Q    A A+ALE+IPR L  N G     +L  LRA+H Q     +
Sbjct: 417  SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM-WY 475

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GV+     + D  E  +WEP  V++     A E A L++ +D
Sbjct: 476  GVDVNNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVD 517


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,634,833
Number of extensions: 2269883
Number of successful extensions: 9957
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 9790
Number of HSP's successfully gapped: 70
Length of query: 576
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 468
Effective length of database: 15,274,216
Effective search space: 7148333088
Effective search space used: 7148333088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007279
         (1730 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Ho...   997   0.0  
Alignment   gi|NP_001008800.1| T-complex protein 1 subunit gamma isoform c ...   903   0.0  
Alignment   gi|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].    299   6e-81
Alignment   gi|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapie...   296   4e-80
Alignment   gi|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo...   286   5e-77
Alignment   gi|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Ho...   280   3e-75
Alignment   gi|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Hom...   262   8e-70
Alignment   gi|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [H...   258   9e-69
Alignment   gi|NP_001159757.1| T-complex protein 1 subunit eta isoform d [H...   257   3e-68
Alignment   gi|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Hom...   225   1e-58

>ref|NP_005989.3| T-complex protein 1 subunit gamma isoform a [Homo sapiens].
          Length = 545

 Score =  997 bits (2577), Expect = 0.0
 Identities = 509/520 (97%), Positives = 514/520 (98%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 60

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
            NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 61   NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 120

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYRKALDDMISTLKKIS PVD ++ DMMLNIINSSITTK ISRWSSLACNIALDAV
Sbjct: 121  VVISAYRKALDDMISTLKKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 180

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            K VQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 181  KMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII LKPDVVITEKGISDLA
Sbjct: 241  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 300

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAGLLEIKKIGDEYF
Sbjct: 301  QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYF 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFIT+CKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 361  TFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV
Sbjct: 421  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 480

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 481  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 520


>ref|NP_001008800.1| T-complex protein 1 subunit gamma isoform c [Homo sapiens].
          Length = 507

 Score =  903 bits (2334), Expect = 0.0
 Identities = 471/520 (90%), Positives = 476/520 (91%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAK                             
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAK----------------------------- 31

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
                     IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 32   ---------IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 82

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYRKALDDMISTLKKIS PVD ++ DMMLNIINSSITTK ISRWSSLACNIALDAV
Sbjct: 83   VVISAYRKALDDMISTLKKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAV 142

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            K VQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 143  KMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 202

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDII LKPDVVITEKGISDLA
Sbjct: 203  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLA 262

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAGLLEIKKIGDEYF
Sbjct: 263  QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYF 322

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFIT+CKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 323  TFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 382

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV
Sbjct: 383  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 442

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 443  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 482


>ref|NP_006421.2| T-complex protein 1 subunit delta [Homo sapiens].
          Length = 539

 Score =  299 bits (765), Expect = 6e-81
 Identities = 175/511 (34%), Positives = 298/511 (58%), Gaps = 6/511 (1%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R+   +++  NI+AAK +AD IRT LGPK M KM+ D  G + +TNDG  IL+++QV HP
Sbjct: 27   RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP 86

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AA+ ++E+S+ QD E GDGTTSV+I+AG +L      L++ +HPT++  +++KAL+  I 
Sbjct: 87   AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146

Query: 575  TLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDI 754
             L  +S PV+ ++R+ +LN   +S+ +KV+S++SSL   ++++AV  V  +      +D+
Sbjct: 147  ILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV-IDPATATSVDL 205

Query: 755  KKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTD 934
            +    V+K+ GG I+D  ++ G+++ + V++  + R ++  +I L+   L   K +    
Sbjct: 206  RDIKIVKKL-GGTIDDCELVEGLVLTQKVSNSGITR-VEKAKIGLIQFCLSAPKTDMDNQ 263

Query: 935  IEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGI-----SDLAQHYLMRANIT 1099
            I ++      R+L+ E  YI  L + I     +V++ +K I     SDLA H+L +  I 
Sbjct: 264  IVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323

Query: 1100 AIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDP- 1276
             I+ + + D   I +  G + V+  ++   + +G+     E+   G      IT C  P 
Sbjct: 324  VIKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKLLKITGCASPG 383

Query: 1277 KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 1456
            K  TI++RG++K ++ E ER++ DA+ V R ++    L+ GGGA E+ +A  LTE S+ +
Sbjct: 384  KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTL 443

Query: 1457 TGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVD 1636
            +G+E +  RA A A+EVIP TL +N G + I  +T LR +H Q   +T G+N   G + +
Sbjct: 444  SGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-KTAGINVRKGGISN 502

Query: 1637 MKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + E  + +PL V +     A ET   +L+ID
Sbjct: 503  ILEELVVQPLLVSVSALTLATETVRSILKID 533


>ref|NP_036205.1| T-complex protein 1 subunit epsilon [Homo sapiens].
          Length = 541

 Score =  296 bits (758), Expect = 4e-80
 Identities = 176/522 (33%), Positives = 302/522 (57%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ +RT LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD  + + ++    +++ +KV++        IA++AV
Sbjct: 134  ADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   E  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + +++ +I +
Sbjct: 194  LTVADME--RRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++T  ED+  + + E+E  +++ + I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++ N+ A+R V   +   IA A G RIV R  EL  E +G  AGL++    G   +
Sbjct: 311  NHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGF-AGLVQEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E++ 
Sbjct: 370  KMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E     
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DMK+  + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|NP_006420.1| T-complex protein 1 subunit eta isoform a [Homo sapiens].
          Length = 543

 Score =  286 bits (731), Expect = 5e-77
 Identities = 169/523 (32%), Positives = 278/523 (53%), Gaps = 8/523 (1%)
 Frame = +2

Query: 185  PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 364
            PV++L + T    G      NI+A + IA+ +RT LGP+ M K+++D  G   ++NDG  
Sbjct: 5    PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 64

Query: 365  ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 544
            IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L   + ++E+ +HP ++I A
Sbjct: 65   ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 124

Query: 545  YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            +R A    ++ +K+I+  V        R ++     +++++K+IS+  +    + +DAV 
Sbjct: 125  FRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 883
             +        ++   K   ++K+ GG +EDS ++ GV   K  ++       K   NP+I
Sbjct: 185  MLD-------DLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKI 237

Query: 884  VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 1063
             LL+  LE K  +   +I +   ED+  I+  E   +    E I H    VV+++  I D
Sbjct: 238  ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGD 297

Query: 1064 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 1243
            +A  Y    ++    RV + D  R   ACG  I +    L  + +G    + E  +IG E
Sbjct: 298  VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSADVLGR-CQVFEETQIGGE 356

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
             + F T C   K CT +LRG +++ + E ER+L DA+ + R  + +  +V GGGA EM +
Sbjct: 357  RYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            +  L + S+ + G +Q    A A+ALE+IPR L  N G     +L  LRA+H Q    TW
Sbjct: 417  SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 474

Query: 1604 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
             GV+     + D  E  +WEP  V++     A E A L++ +D
Sbjct: 475  YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVD 517


>ref|NP_110379.2| T-complex protein 1 subunit alpha isoform a [Homo sapiens].
          Length = 556

 Score =  280 bits (716), Expect = 3e-75
 Identities = 176/519 (33%), Positives = 286/519 (55%), Gaps = 14/519 (2%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 11   RSTGETIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 70

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 71   AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 130

Query: 575  TL-KKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 748
             + + +    D   RD ++N   +S+++K+I        N+ +DAV  +++ +  G+   
Sbjct: 131  YINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDIRGQPRY 190

Query: 749  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 928
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 191  PVNS-VNILKAHGRSQMESMLISGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 249

Query: 929  TDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIR 1108
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y + A   A+R
Sbjct: 250  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVR 309

Query: 1109 RVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEI-----KKIGDEYFTFITECKD 1273
            RV K D  RIA+A GA I+S    L  E+    A L +      ++I D+    I   K 
Sbjct: 310  RVLKRDLKRIAKASGATILSTLANLEGEETFEAAMLGQAEEVVQERICDDELILIKNTKA 369

Query: 1274 PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKA 1453
              + +I+LRGA+  +  E+ER+L DA+ V + VL    +VPGGGA E A++  L   + +
Sbjct: 370  RTSASIILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATS 429

Query: 1454 MTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGVN 1612
            M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G++
Sbjct: 430  MGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLD 489

Query: 1613 GETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
               G   D K+ G++EP  VK+++ K A E A+ +LRID
Sbjct: 490  LSNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRID 528


>ref|NP_001753.1| T-complex protein 1 subunit zeta isoform a [Homo sapiens].
          Length = 531

 Score =  262 bits (669), Expect = 8e-70
 Identities = 147/504 (29%), Positives = 286/504 (56%), Gaps = 9/504 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI+AA+ + D++RT LGPK  MKML+   G I +T DGN +L E+Q+QHP A  + +++ 
Sbjct: 23   NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 82

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A +  +  L+++    +
Sbjct: 83   AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSRE 142

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 784
              +R+ ++++  +S+ TKV +  + +     +D++  ++ ++   + ID+     + ++ 
Sbjct: 143  M-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIKKQD---EPIDL-FMIEIMEMK 197

Query: 785  GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 964
                 D+ ++RG++++    HP M++ +++  I+  + SLEY+K E  +       E+  
Sbjct: 198  HKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEERE 257

Query: 965  RILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLAQHYLMRANITAIRRVR 1117
            ++++ E ++I+   + II LK           VVI +KGI   +   L +  I A+RR +
Sbjct: 258  KLVKAERKFIEDRVKKIIELKRKVCGDSDKGFVVINQKGIDPFSLDALSKEGIVALRRAK 317

Query: 1118 KTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 1297
            + +  R+  ACG   ++  ++L  + +G  AGL+    +G+E FTFI +C +P++ T+L+
Sbjct: 318  RRNMERLTLACGGVALNSFDDLSPDCLG-HAGLVYEYTLGEEKFTFIEKCNNPRSVTLLI 376

Query: 1298 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWP 1477
            +G +K  L++++  ++D ++  +N + D  +VPG GA E+A+A AL +   ++ G  Q  
Sbjct: 377  KGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLG 436

Query: 1478 YRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIW 1657
             +A A AL +IP+ L QN G      L  ++A+H+ E+ +  GV+  TG  +   E+G+W
Sbjct: 437  VQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHS-ESGQLVGVDLNTGEPMVAAEVGVW 495

Query: 1658 EPLAVKLQTYKTAVETAVLLLRID 1729
            +   VK Q   +    A  +L +D
Sbjct: 496  DNYCVKKQLLHSCTVIATNILLVD 519


>ref|NP_006575.2| T-complex protein 1 subunit zeta-2 isoform 1 [Homo sapiens].
          Length = 530

 Score =  258 bits (660), Expect = 9e-69
 Identities = 155/520 (29%), Positives = 286/520 (55%), Gaps = 12/520 (2%)
 Frame = +2

Query: 206  NTKRE--SGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREI 379
            N+K E    R   + NI AA+ + D++RT LGPK  MKML+   G I +T DGN +L E+
Sbjct: 8    NSKAEVARARAALAVNICAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLDEM 67

Query: 380  QVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKAL 559
            Q+QHP A  + +++  QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A 
Sbjct: 68   QIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAK 127

Query: 560  DDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGR 739
               +  L+++    +   R ++L++  +S+ TKV +  + +   + +D+V  V+     R
Sbjct: 128  IKALEVLEEVKVTKEM-KRKILLDVARTSLQTKVHAELADVLTEVVVDSVLAVR-----R 181

Query: 740  KEIDIKKY-ARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKK 916
                I  +   + ++   +  D+ +++G++++    HP M++ +++  I++ + SLEY+K
Sbjct: 182  PGYPIDLFMVEIMEMKHKLGTDTKLIQGLVLDHGARHPDMKKRVEDAFILICNVSLEYEK 241

Query: 917  GESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLA 1069
             E  +       E+  ++++ E ++I+   + II LK           VVI +KGI   +
Sbjct: 242  TEVNSGFFYKTAEEKEKLVKAERKFIEDRVQKIIDLKDKVCAQSNKGFVVINQKGIDPFS 301

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
               L +  I A+RR ++ +  R++ ACG   V+  E+L  + +G  AGL+    +G+E F
Sbjct: 302  LDSLAKHGIVALRRAKRRNMERLSLACGGMAVNSFEDLTVDCLG-HAGLVYEYTLGEEKF 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFI EC +P + T+L++G +K  L++V+  ++D ++  +N + D  +VPG GA E+A+A 
Sbjct: 361  TFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAE 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            AL     ++ G  +   +A A AL +IP+ L QN G      L  ++A+H  E+ +  GV
Sbjct: 421  ALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHV-ESKQLVGV 479

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            +  TG  +   + G+W+   VK Q   +    A  +L +D
Sbjct: 480  DLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVD 519


>ref|NP_001159757.1| T-complex protein 1 subunit eta isoform d [Homo sapiens].
          Length = 499

 Score =  257 bits (656), Expect = 3e-68
 Identities = 154/483 (31%), Positives = 255/483 (52%), Gaps = 8/483 (1%)
 Frame = +2

Query: 305  MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 484
            M K+++D  G   ++NDG  IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E 
Sbjct: 1    MDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEF 60

Query: 485  LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD----TNNRDMMLNIINSSIT 652
            L   + ++E+ +HP ++I A+R A    ++ +K+I+  V        R ++     ++++
Sbjct: 61   LKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALS 120

Query: 653  TKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMIN 832
            +K+IS+  +    + +DAV  +        ++   K   ++K+ GG +EDS ++ GV   
Sbjct: 121  SKLISQQKAFFAKMVVDAVMMLD-------DLLQLKMIGIKKVQGGALEDSQLVAGVAFK 173

Query: 833  KDVTHPRMRRYIK---NPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQL 1003
            K  ++       K   NP+I LL+  LE K  +   +I +   ED+  I+  E   +   
Sbjct: 174  KTFSYAGFEMQPKKYHNPKIALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDK 233

Query: 1004 CEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEEL 1183
             E I H    VV+++  I D+A  Y    ++    RV + D  R   ACG  I +    L
Sbjct: 234  LEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNAL 293

Query: 1184 REEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVC 1363
              + +G    + E  +IG E + F T C   K CT +LRG +++ + E ER+L DA+ + 
Sbjct: 294  SADVLGR-CQVFEETQIGGERYNFFTGCPKAKTCTFILRGGAEQFMEETERSLHDAIMIV 352

Query: 1364 RNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGAS 1543
            R  + +  +V GGGA EM ++  L + S+ + G +Q    A A+ALE+IPR L  N G  
Sbjct: 353  RRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFD 412

Query: 1544 TIRLLTSLRAKHTQENCETW-GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLL 1720
               +L  LRA+H Q    TW GV+     + D  E  +WEP  V++     A E A L++
Sbjct: 413  ATNILNKLRARHAQGG--TWYGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIV 470

Query: 1721 RID 1729
             +D
Sbjct: 471  SVD 473


>ref|NP_006422.1| T-complex protein 1 subunit beta isoform 1 [Homo sapiens].
          Length = 535

 Score =  225 bits (573), Expect = 1e-58
 Identities = 159/529 (30%), Positives = 273/529 (51%), Gaps = 8/529 (1%)
 Frame = +2

Query: 167  AMMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGI 340
            A +   PV +       E     +  +   A  I D++++ LGPK M K+LL       +
Sbjct: 2    ASLSLAPVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASL 61

Query: 341  VMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQM 520
            ++TNDG  IL+ I V +PAAK ++++SR QD+EVGDGTTSV +LA E+L  AE  + +++
Sbjct: 62   MVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKI 121

Query: 521  HPTVVISAYRKALDDMISTLKKISTPVDTNN-----RDMMLNIINSSITTKVISRWSSLA 685
            HP  +I+ +R+A       L  +S+ VD  +     R  ++NI  +++++K+++      
Sbjct: 122  HPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHF 179

Query: 686  CNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRY 865
              +A++AV  ++   N      IKK        GG + DS +  G +++K +   + +R 
Sbjct: 180  TKLAVEAVLRLKGSGNLEAIHIIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR- 231

Query: 866  IKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVI 1042
            I+N +I++ ++ ++  K +   + + +        I   E+E +++  E I+    +  I
Sbjct: 232  IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFI 291

Query: 1043 TEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLE 1222
              + I +  +     A + AI         R+A   G  I S  +      +G+   L+E
Sbjct: 292  NRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIE 350

Query: 1223 IKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGG 1402
               IG++     +     +ACTI+LRGA+++IL E ER+L DA+ V    + D + V GG
Sbjct: 351  EVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGG 410

Query: 1403 GASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHT 1582
            G SEM +AHA+T+ +    G E     + A+AL ++P  +  N G  +  L+  LRA H+
Sbjct: 411  GCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS 470

Query: 1583 QENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + N  T G++   GT+ DM  LGI E   VK Q   +A E A ++LR+D
Sbjct: 471  EGN-TTAGLDMREGTIGDMAILGITESFQVKRQVLLSAAEAAEVILRVD 518


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,374,184
Number of extensions: 2239960
Number of successful extensions: 9747
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 9648
Number of HSP's successfully gapped: 27
Length of query: 576
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 468
Effective length of database: 14,737,052
Effective search space: 6896940336
Effective search space used: 6896940336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007279
         (1730 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001229994.1| T-complex protein 1 subunit gamma [Mus muscu...   999   0.0  
Alignment   gi|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].    999   0.0  
Alignment   gi|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].    297   2e-80
Alignment   gi|NP_031663.1| T-complex protein 1 subunit epsilon [Mus muscul...   291   1e-78
Alignment   gi|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].      281   9e-76
Alignment   gi|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].    271   9e-73
Alignment   gi|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].     265   1e-70
Alignment   gi|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculu...   261   9e-70
Alignment   gi|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].     228   1e-59
Alignment   gi|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].    213   5e-55

>ref|NP_001229994.1| T-complex protein 1 subunit gamma [Mus musculus].
          Length = 545

 Score =  999 bits (2584), Expect = 0.0
 Identities = 509/520 (97%), Positives = 516/520 (99%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 60

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
            NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 61   NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 120

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYR ALDDMISTLKKISTPVD NNR+MML+IINSSITTKVISRWSSLACNIALDAV
Sbjct: 121  VVISAYRMALDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 181  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYI QLCEDII LKPDVVITEKGISDLA
Sbjct: 241  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLA 300

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRAN+TAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAGLLEIKKIGDEYF
Sbjct: 301  QHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYF 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFIT+CKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 361  TFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQE+CETWGV
Sbjct: 421  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGV 480

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 481  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 520


>ref|NP_033966.1| T-complex protein 1 subunit gamma [Mus musculus].
          Length = 545

 Score =  999 bits (2584), Expect = 0.0
 Identities = 509/520 (97%), Positives = 516/520 (99%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 60

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
            NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 61   NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 120

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYR ALDDMISTLKKISTPVD NNR+MML+IINSSITTKVISRWSSLACNIALDAV
Sbjct: 121  VVISAYRMALDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAV 180

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 181  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYI QLCEDII LKPDVVITEKGISDLA
Sbjct: 241  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLA 300

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRAN+TAIRRVRKTDNNRIARACGARIVSRPEELRE+D+GTGAGLLEIKKIGDEYF
Sbjct: 301  QHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYF 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFIT+CKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 361  TFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQE+CETWGV
Sbjct: 421  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQESCETWGV 480

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 481  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 520


>ref|NP_033967.1| T-complex protein 1 subunit delta [Mus musculus].
          Length = 539

 Score =  297 bits (761), Expect = 2e-80
 Identities = 174/511 (34%), Positives = 296/511 (57%), Gaps = 6/511 (1%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R+   +++  NI+AAK +AD IRT LGPK M KM+ D  G + +TNDG  IL+++QV HP
Sbjct: 27   RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP 86

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AA+ ++E+S+ QD E GDGTTSV+I+AG +L      L++ +HPT++  +++KAL+  + 
Sbjct: 87   AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLE 146

Query: 575  TLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDI 754
             L  +S PV  ++R+ +LN   +S+ +KV+S++SSL   ++++AV  V  +      +D+
Sbjct: 147  ILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV-IDPATATSVDL 205

Query: 755  KKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTD 934
            +    V+K+ GG I+D  ++ G+++ + V +  + R ++  +I L+   L   K +    
Sbjct: 206  RDIKIVKKL-GGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQ 263

Query: 935  IEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGI-----SDLAQHYLMRANIT 1099
            I ++      R+L+ E  YI  L + I     +V++ +K I     SDLA H+L +  I 
Sbjct: 264  IVVSDYAQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323

Query: 1100 AIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDP- 1276
             ++ V + D   I +  G + V+  ++   + +G+     E+   G      IT C  P 
Sbjct: 324  VVKDVEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVSLNGSGKLFKITGCTSPG 383

Query: 1277 KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 1456
            K  TI++RG++K ++ E ER++ DA+ V R ++    L+ GGGA E+ +A  LTE S+ +
Sbjct: 384  KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTL 443

Query: 1457 TGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVD 1636
            +G+E +  RA A A+EVIP TL +N G + I  +T LR +H Q   +T G+N   G + +
Sbjct: 444  SGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-KTTGINVRKGGISN 502

Query: 1637 MKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + E  + +PL V +     A ET   +L+ID
Sbjct: 503  ILEEMVVQPLLVSVSALTLATETVRSILKID 533


>ref|NP_031663.1| T-complex protein 1 subunit epsilon [Mus musculus].
          Length = 541

 Score =  291 bits (744), Expect = 1e-78
 Identities = 175/522 (33%), Positives = 300/522 (57%), Gaps = 6/522 (1%)
 Frame = +2

Query: 182  RPVLVLSQNTKRES--GRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTND 355
            RP L++    ++    G +    +I AAK +A+ +RT LGP  + KM++D  G + +TND
Sbjct: 14   RPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITND 73

Query: 356  GNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVV 535
            G  IL  + V H  AK M+E+S++QD+E+GDGTT V++LAG +L  AE  L++ +HP  +
Sbjct: 74   GATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRI 133

Query: 536  ISAYRKALDDMISTLKKISTP--VDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
               Y +A    I  L KIS    VD NN + ++    +++ +KVI+        IA++AV
Sbjct: 134  ADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAV 193

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
             TV   E  R+++D  +  +VE   GG +ED+ +++GV+++KD +HP+M + + + +I +
Sbjct: 194  LTVADME--RRDVDF-ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAI 250

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            L    E  K +++  +++   ED+  + + E+E  +++ + I     ++ I + G  D A
Sbjct: 251  LTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEA 310

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIG--DE 1243
             H L++  + A+R V   +   IA A G RIV R  EL  E +G  AG+++    G   +
Sbjct: 311  NHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGF-AGVVQEISFGTTKD 369

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
                I +CK+ +A TI +RG +K I+ E +R+L DA+ V RN++ D ++V GGGA+E++ 
Sbjct: 370  KMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISC 429

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            A A+++++     +EQ+  RA A ALEVIP  L +N G + I+ +T +RA+  +E+    
Sbjct: 430  ALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPAL 489

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            G++       DM+   + E L  K Q    A +   ++L+ID
Sbjct: 490  GIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKID 531


>ref|NP_031664.3| T-complex protein 1 subunit eta [Mus musculus].
          Length = 544

 Score =  281 bits (720), Expect = 9e-76
 Identities = 166/522 (31%), Positives = 277/522 (53%), Gaps = 7/522 (1%)
 Frame = +2

Query: 185  PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 364
            PV++L + T    G      NI+A + IA+ +RT LGP+ M K+++D  G   ++NDG  
Sbjct: 5    PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 64

Query: 365  ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 544
            IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L   + ++E+ +HP ++I A
Sbjct: 65   ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 124

Query: 545  YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            +R A    ++ +K+I+  V        R M+     +++++K+IS+       + +DAV 
Sbjct: 125  FRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVM 184

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMR---RYIKNPRI 883
             +        E+   K   ++K+ GG +E+S ++ GV   K  ++       +  KNP+I
Sbjct: 185  MLD-------ELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKI 237

Query: 884  VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 1063
             LL+  LE K  +   +I +   ED+  I+  E   +    E I      V++++  I D
Sbjct: 238  ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKVILSKLPIGD 297

Query: 1064 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 1243
            +A  Y    ++    RV + D  R   ACG  I +    L  + +G    + E  +IG E
Sbjct: 298  VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALVPDVLG-HCQVFEETQIGGE 356

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
             + F T C   K CTI+LRG +++ + E ER+L DA+ + R  + +  +V GGGA EM +
Sbjct: 357  RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            +  L + S+ + G +Q    A A+ALE+IPR L  N G     +L  LRA+H Q     +
Sbjct: 417  SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGM-WY 475

Query: 1604 GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            GV+     + D  +  +WEP  V++     A E A L++ +D
Sbjct: 476  GVDINNENIADNFQAFVWEPAMVRINALTAASEAACLIVSVD 517


>ref|NP_038714.2| T-complex protein 1 subunit alpha [Mus musculus].
          Length = 556

 Score =  271 bits (694), Expect = 9e-73
 Identities = 174/520 (33%), Positives = 286/520 (55%), Gaps = 15/520 (2%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R +G  V+S N+ AA +IA+I+++  GP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 11   RSTGEAVRSQNVMAAASIANIVKSSFGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 70

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 71   AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 130

Query: 575  TL-KKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQF-EENGRKEI 748
             + + +    D   RD ++N   +S+++K+I        N+ +DAV  V++ +  G+   
Sbjct: 131  YINENLIINTDELGRDCLINAAKTSMSSKIIGINGDYFANMVVDAVLAVKYTDARGQPRY 190

Query: 749  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 928
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 191  PVNS-VNILKAHGRSQIESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 249

Query: 929  TDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIR 1108
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y + A   A+R
Sbjct: 250  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMYLKYFVEAGAMAVR 309

Query: 1109 RVRKTDNNRIARACGARIVSRPEELREED------IGTGAGLLEIKKIGDEYFTFITECK 1270
            RV K D   +A+A GA I+S    L  E+      +G    +++ ++I D+    I   K
Sbjct: 310  RVLKRDLKHVAKASGASILSTLANLEGEETFEVTMLGQAEEVVQ-ERICDDELILIKNTK 368

Query: 1271 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSK 1450
               + +I+LRGA+  +  E+ER+L DA+ V + VL    +VPGGGA E A++  L   + 
Sbjct: 369  ARTSASIILRGANDFMCDEMERSLHDALCVVKRVLELKSVVPGGGAVEAALSIYLENYAT 428

Query: 1451 AMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGV 1609
            +M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G+
Sbjct: 429  SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 488

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            +   G   D K+ G++EP  VK+++ K A E A+ +LRID
Sbjct: 489  DLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRID 528


>ref|NP_033968.1| T-complex protein 1 subunit zeta [Mus musculus].
          Length = 531

 Score =  265 bits (676), Expect = 1e-70
 Identities = 148/504 (29%), Positives = 286/504 (56%), Gaps = 9/504 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI+AA+ + D++RT LGPK  MKML+   G I +T DGN +L E+Q+QHP A  + +++ 
Sbjct: 23   NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 82

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A +  +  L+++    +
Sbjct: 83   AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE 142

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 784
              +R+ ++++  +S+ TKV +  + +     +D++  ++ ++   + ID+     + ++ 
Sbjct: 143  M-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAIRKKD---EPIDL-FMVEIMEMK 197

Query: 785  GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 964
                 D+ ++RG++++    HP M++ ++N  I+  + SLEY+K E  +       E+  
Sbjct: 198  HKSETDTSLIRGLVLDHGARHPDMKKRVENAYILTCNVSLEYEKTEVNSGFFYKSAEERE 257

Query: 965  RILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLAQHYLMRANITAIRRVR 1117
            ++++ E ++I+   + II LK           VVI +KGI   +   L +  I A+RR +
Sbjct: 258  KLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAK 317

Query: 1118 KTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 1297
            + +  R+  ACG   ++  ++L  + +G  AGL+    +G+E FTFI +C +P++ T+L+
Sbjct: 318  RRNMERLTLACGGIALNSFDDLNPDCLG-HAGLVYEYTLGEEKFTFIEKCNNPRSVTLLV 376

Query: 1298 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWP 1477
            +G +K  L++++  ++D ++  +N + D  +VPG GA E+A+A AL +   ++ G  Q  
Sbjct: 377  KGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKGRAQLG 436

Query: 1478 YRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIW 1657
             +A A AL +IP+ L QN G      L  ++A+H+ E+ +  GV+  TG  +   E+G+W
Sbjct: 437  VQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHS-ESGQLVGVDLSTGEPMVAAEMGVW 495

Query: 1658 EPLAVKLQTYKTAVETAVLLLRID 1729
            +   VK Q   +    A  +L +D
Sbjct: 496  DNYCVKKQLLHSCTVIATNILLVD 519


>ref|NP_033969.2| T-complex protein 1 subunit zeta-2 [Mus musculus].
          Length = 531

 Score =  261 bits (668), Expect = 9e-70
 Identities = 155/505 (30%), Positives = 274/505 (54%), Gaps = 10/505 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI AA+ + D++R  LGPK  +KML+   G I +T DGN +L E+Q+QHP A  + +++ 
Sbjct: 23   NICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAA 82

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             QD   GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A    +  L +I    +
Sbjct: 83   AQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIKVQKE 142

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKY-ARVEKI 781
               R+++L++  +S+ TKV +  + +     +D+V  ++     R  + I  +   + ++
Sbjct: 143  M-KREILLDVARTSLQTKVHAELADILTEAVVDSVLAIR-----RPGVPIDLFMVEIVEM 196

Query: 782  PGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDF 961
                  D+ ++RG++++    HPRMR+ +++  I+  + SLEY+K E  +       E+ 
Sbjct: 197  RHKSETDTQLIRGLVLDHGARHPRMRKQVRDAYILTCNVSLEYEKTEVSSGFFYKTVEEK 256

Query: 962  TRILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLAQHYLMRANITAIRRV 1114
             ++++ E ++I+   + II LK           VVI +KGI  ++   L + NI A+RR 
Sbjct: 257  EKLVKAERKFIEDRVQKIIDLKQKVCAESNKGFVVINQKGIDPVSLEMLAKHNIVALRRA 316

Query: 1115 RKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTIL 1294
            ++ +  R+  ACG   V+  E L EE +G  AGL+    +G+E FTFI +C +P + T+L
Sbjct: 317  KRRNLERLTLACGGLAVNSFEGLSEECLG-HAGLVFEYALGEEKFTFIEDCVNPLSVTLL 375

Query: 1295 LRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQW 1474
            ++G +K  L +++  L+D ++  +N + D  +VPG GA E+A+A AL      + G  + 
Sbjct: 376  VKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRVRL 435

Query: 1475 PYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGI 1654
              +A A AL +IP+ L QN G      L  ++ KH  E+ E  G++  TG  +   E GI
Sbjct: 436  GIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHA-ESKELLGIDLNTGEPMAAAEAGI 494

Query: 1655 WEPLAVKLQTYKTAVETAVLLLRID 1729
            W+   VK     +    A  +L +D
Sbjct: 495  WDNYCVKKHLLHSCTVIATNILLVD 519


>ref|NP_031662.2| T-complex protein 1 subunit beta [Mus musculus].
          Length = 535

 Score =  228 bits (580), Expect = 1e-59
 Identities = 159/529 (30%), Positives = 275/529 (51%), Gaps = 8/529 (1%)
 Frame = +2

Query: 167  AMMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGI 340
            A +   PV +       E     +  +   A  I D++++ LGPK M K+LL       +
Sbjct: 2    ASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAAL 61

Query: 341  VMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQM 520
            ++TNDG  IL+ I V +PAAK ++++SR QD+EVGDGTTSV +LA E+L  AE  + +++
Sbjct: 62   MVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKI 121

Query: 521  HPTVVISAYRKALDDMISTLKKISTPVDTNNRDM-----MLNIINSSITTKVISRWSSLA 685
            HP  +IS +R+A       L  +S+ VD  + +      ++NI  +++++K+++      
Sbjct: 122  HPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHF 179

Query: 686  CNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRY 865
              +A++AV  ++   N      IKK        GG + DS +  G +++K +   + +R 
Sbjct: 180  TKLAVEAVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR- 231

Query: 866  IKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVI 1042
            I+N +I++ ++ ++  K +   + + +        I   E+E +++  E I+    +  I
Sbjct: 232  IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFI 291

Query: 1043 TEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLE 1222
              + I +  +     A + AI         R+A   G  I S  +      +G+   L+E
Sbjct: 292  NRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIE 350

Query: 1223 IKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGG 1402
               IG++     +     +ACTI+LRGA+++IL E ER+L DA+ V    + DP+ V GG
Sbjct: 351  EVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDPRTVYGG 410

Query: 1403 GASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHT 1582
            G SEM +AHA+T+ +    G E     + A+AL ++P  +  N G  +  L+  LRA H+
Sbjct: 411  GCSEMLMAHAVTQLANRTPGKEAVAMESFAKALRMLPTIIADNAGYDSADLVAQLRAAHS 470

Query: 1583 QENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + +  T G++ + GT+ DM  LGI E   VK Q   +A E A ++LR+D
Sbjct: 471  EGHI-TAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVD 518


>ref|NP_033970.3| T-complex protein 1 subunit theta [Mus musculus].
          Length = 548

 Score =  213 bits (541), Expect = 5e-55
 Identities = 151/503 (30%), Positives = 250/503 (49%), Gaps = 8/503 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI A K +A   RT  GP  M KM+++ +  + +TND   ILRE++VQHPAAK ++  S 
Sbjct: 32   NIQACKELAQTTRTAYGPNGMNKMVINRLEKLFVTNDAATILRELEVQHPAAKMIVMASH 91

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             Q++EVGDGT  V++ AG +L +AE  L   +  + VIS Y  A       L ++     
Sbjct: 92   MQEQEVGDGTNFVLVFAGALLELAEELLRIGLSVSEVISGYEIACKKAHEILPELVCCSA 151

Query: 605  TNNRDM--MLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEK 778
             N RD+  + +++ +SI +K     + LA  IA   V    F ++G   +D     RV K
Sbjct: 152  KNLRDVDEVSSLLRTSIMSKQYGSETFLAKLIAQACVSI--FPDSGNFNVD---NIRVCK 206

Query: 779  IPGGIIEDSCVLRGVMINK----DVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEIT 946
            I G  I  S VL G++  K    DVT       +K+ +I +     +    E++  + I 
Sbjct: 207  ILGSGIYSSSVLHGMVFKKETEGDVTS------VKDAKIAVYSCPFDGMITETKGTVLIK 260

Query: 947  REEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTD 1126
              E+     + EE  +    + I     +V++T   ++D+A HY  + NI  +R   K D
Sbjct: 261  TAEELMNFSKGEENLMDAQVKAIAGTGANVIVTGGKVADIALHYANKYNIMLVRLNSKWD 320

Query: 1127 NNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGD-EYFTFITECKDPKACTILLRG 1303
              R+ +  GA  + +     +E++G     + + ++GD +   F  E +D    TI+LRG
Sbjct: 321  LRRLCKTVGATALPKLTPPVQEEMG-HCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRG 379

Query: 1304 ASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYR 1483
            ++  ++ ++ER + D +   + +  D +LVPGGGA+E+ +A  +T   +   G+EQ+  +
Sbjct: 380  STDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIK 439

Query: 1484 AVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCET-WGVNGETGTLVDMKELGIWE 1660
              A+A E IPR L +N G     +++ L + H + N      +  E   + DM E  I +
Sbjct: 440  KFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVKDMLEASILD 499

Query: 1661 PLAVKLQTYKTAVETAVLLLRID 1729
                K    K A   AV +LR+D
Sbjct: 500  TYLGKYWAIKLATNAAVTVLRVD 522


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,882,957
Number of extensions: 1883809
Number of successful extensions: 7920
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 7856
Number of HSP's successfully gapped: 17
Length of query: 576
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 469
Effective length of database: 12,403,707
Effective search space: 5817338583
Effective search space used: 5817338583
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007279
         (1730 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma...  1017   0.0  
Alignment   gi|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma...   930   0.0  
Alignment   gi|XP_001926412.3| PREDICTED: t-complex protein 1 subunit gamma...   924   0.0  
Alignment   gi|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta...   300   2e-81
Alignment   gi|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].     285   4e-77
Alignment   gi|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrof...   278   7e-75
Alignment   gi|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsil...   266   3e-71
Alignment   gi|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-...   264   1e-70
Alignment   gi|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-...   230   2e-60
Alignment   gi|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].    225   5e-59

>ref|XP_003355174.1| PREDICTED: t-complex protein 1 subunit gamma isoform 2 [Sus scrofa].
          Length = 545

 Score = 1017 bits (2630), Expect = 0.0
 Identities = 520/520 (100%), Positives = 520/520 (100%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 60

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
            NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 61   NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 120

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV
Sbjct: 121  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 180

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 181  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 240

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA
Sbjct: 241  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 300

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF
Sbjct: 301  QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 360

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 361  TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 420

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV
Sbjct: 421  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 480

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 481  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 520


>ref|XP_003355175.1| PREDICTED: t-complex protein 1 subunit gamma isoform 3 [Sus scrofa].
          Length = 500

 Score =  930 bits (2403), Expect = 0.0
 Identities = 475/475 (100%), Positives = 475/475 (100%)
 Frame = +2

Query: 305  MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 484
            MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM
Sbjct: 1    MMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEM 60

Query: 485  LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVI 664
            LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVI
Sbjct: 61   LSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVI 120

Query: 665  SRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 844
            SRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT
Sbjct: 121  SRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVT 180

Query: 845  HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL 1024
            HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL
Sbjct: 181  HPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHL 240

Query: 1025 KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGT 1204
            KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGT
Sbjct: 241  KPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGT 300

Query: 1205 GAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDP 1384
            GAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDP
Sbjct: 301  GAGLLEIKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDP 360

Query: 1385 QLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTS 1564
            QLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTS
Sbjct: 361  QLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTS 420

Query: 1565 LRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            LRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 421  LRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 475


>ref|XP_001926412.3| PREDICTED: t-complex protein 1 subunit gamma isoform 1 [Sus scrofa].
          Length = 507

 Score =  924 bits (2387), Expect = 0.0
 Identities = 482/520 (92%), Positives = 482/520 (92%)
 Frame = +2

Query: 170  MMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMT 349
            MMGHRPVLVLSQNTKRESGRKVQSGNINAAK                             
Sbjct: 1    MMGHRPVLVLSQNTKRESGRKVQSGNINAAK----------------------------- 31

Query: 350  NDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 529
                     IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT
Sbjct: 32   ---------IQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPT 82

Query: 530  VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 709
            VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV
Sbjct: 83   VVISAYRKALDDMISTLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAV 142

Query: 710  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 889
            KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL
Sbjct: 143  KTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVL 202

Query: 890  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 1069
            LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA
Sbjct: 203  LDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLA 262

Query: 1070 QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 1249
            QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF
Sbjct: 263  QHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYF 322

Query: 1250 TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 1429
            TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH
Sbjct: 323  TFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAH 382

Query: 1430 ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 1609
            ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV
Sbjct: 383  ALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGV 442

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID
Sbjct: 443  NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 482


>ref|XP_003125148.1| PREDICTED: t-complex protein 1 subunit delta-like [Sus scrofa].
          Length = 539

 Score =  300 bits (768), Expect = 2e-81
 Identities = 175/511 (34%), Positives = 297/511 (58%), Gaps = 6/511 (1%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R+   +++  NI+AAK +AD IRT LGPK M KM+ D  G + +TNDG  IL+++QV HP
Sbjct: 27   RDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHP 86

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AA+ ++E+S+ QD E GDGTTSV+I+AG +L      L++ +HPT++  +++KAL+  I 
Sbjct: 87   AARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIE 146

Query: 575  TLKKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDI 754
             L  +S PV+ ++RD +LN   +S+ +KV+S++SSL   ++++AV  V  +      +D+
Sbjct: 147  ILTDMSRPVELSDRDTLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV-IDPATATSVDL 205

Query: 755  KKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTD 934
            +    V+K+ GG I+D  ++ G+++ + V +  + R ++  +I L+   L   K +    
Sbjct: 206  RDIKIVKKL-GGTIDDCELVEGLVLTQKVANSGITR-VEKAKIGLIQFCLSAPKTDMDNQ 263

Query: 935  IEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGI-----SDLAQHYLMRANIT 1099
            I ++      R+L+ E  YI  L + I     +V++ +K I     SDLA H+L +  I 
Sbjct: 264  IVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIM 323

Query: 1100 AIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDP- 1276
             ++ + + D   I +  G + V+  ++   + +G+     E+   G      IT C  P 
Sbjct: 324  VVKDIEREDIEFICKTIGTKPVAHIDQFTADMLGSAELAEEVNLNGSGKMLKITGCASPG 383

Query: 1277 KACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAM 1456
            K  TI++RG++K ++ E ER++ DA+ V R ++    L+ GGGA E+ +A  LTE S+ +
Sbjct: 384  KTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTL 443

Query: 1457 TGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVD 1636
            +G+E +  RA A A+EVIP TL +N G + I  +T LR +H Q   +T G+N   G + +
Sbjct: 444  SGMESYCVRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGE-KTTGINVRKGGISN 502

Query: 1637 MKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + E  + +PL V +     A ET   +L+ID
Sbjct: 503  ILEEMVVQPLLVSVSALTLATETVRSILKID 533


>ref|NP_001163993.1| T-complex protein 1 subunit eta [Sus scrofa].
          Length = 543

 Score =  285 bits (730), Expect = 4e-77
 Identities = 169/523 (32%), Positives = 278/523 (53%), Gaps = 8/523 (1%)
 Frame = +2

Query: 185  PVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNA 364
            PV++L + T    G      NI+A + IA+ +RT LGP+ M K+++D  G   ++NDG  
Sbjct: 5    PVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGAT 64

Query: 365  ILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISA 544
            IL+ + V HPAAK++++I+++QD EVGDGTTSV +LA E L   + ++E+ +HP ++I A
Sbjct: 65   ILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRA 124

Query: 545  YRKALDDMISTLKKISTPV----DTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVK 712
            +R A    ++ +K+I+  V        R ++     +++++K+IS+  +    + +DAV 
Sbjct: 125  FRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVM 184

Query: 713  TVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIK---NPRI 883
             +        ++   K   ++K+ GG +E+S ++ GV   K  ++       K   NP I
Sbjct: 185  MLD-------DLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMI 237

Query: 884  VLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISD 1063
             LL+  LE K  +   +I +   ED+  I+  E   +    E I H    VV+++  I D
Sbjct: 238  ALLNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLERIYHSGAKVVLSKLPIGD 297

Query: 1064 LAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDE 1243
            +A  Y    ++    RV + D  R   ACG  I +    L  + +G    + E  +IG E
Sbjct: 298  VATQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGR-CQVFEETQIGGE 356

Query: 1244 YFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAV 1423
             + F T C   K CTI+LRG +++ + E ER+L DA+ + R  + +  +V GGGA EM +
Sbjct: 357  RYNFFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMEL 416

Query: 1424 AHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETW 1603
            +  L + S+ + G +Q    A A+ALE+IPR L  N G     +L  LRA+H Q    TW
Sbjct: 417  SKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGG--TW 474

Query: 1604 -GVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
             GV+     + D  E  +WEP  V++     A E A L++ +D
Sbjct: 475  YGVDINNEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVD 517


>ref|NP_001230356.1| T-complex protein 1 subunit alpha [Sus scrofa].
          Length = 556

 Score =  278 bits (711), Expect = 7e-75
 Identities = 175/520 (33%), Positives = 287/520 (55%), Gaps = 15/520 (2%)
 Frame = +2

Query: 215  RESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHP 394
            R +G  ++S N+ AA +IA+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HP
Sbjct: 11   RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP 70

Query: 395  AAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMIS 574
            AAK + E++  QD+EVGDGTTSV+I+A E+L  A+  ++Q++HPT VIS YR A  + + 
Sbjct: 71   AAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVR 130

Query: 575  TL-KKISTPVDTNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE-NGRKEI 748
             + + +    D   RD ++N   +S+++K+I        N+ +DAV  +++ +  G+   
Sbjct: 131  YISENLIINTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAIKYTDVRGQPRY 190

Query: 749  DIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQ 928
             +     + K  G    +S ++ G  +N  V    M + I N +I  LD SL+  K +  
Sbjct: 191  PVNS-INILKAHGRSQTESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKLG 249

Query: 929  TDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIR 1108
              + IT  E   +I Q E +  ++  + I+    +V++T  GI D+   Y +     A+R
Sbjct: 250  VQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVETGAMAVR 309

Query: 1109 RVRKTDNNRIARACGARIVSRPEELREED------IGTGAGLLEIKKIGDEYFTFITECK 1270
            RV K D  RIA+A GA I+S    L  E+      +G    +++ ++I D+    I   K
Sbjct: 310  RVLKRDLKRIAKASGATILSTLANLEGEETFEASMLGQAEEVVQ-ERICDDELILIKNTK 368

Query: 1271 DPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSK 1450
               + +I+LRGA+  +  E+ER+L DA+ V R VL    +VPGGGA E A++  L   + 
Sbjct: 369  ARTSASIILRGANDFMCDEMERSLHDALCVVRRVLESKSVVPGGGAVEAALSIYLENYAT 428

Query: 1451 AMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQ-------ENCETWGV 1609
            +M   EQ      A++L VIP TL  N    +  L+  LRA H +       +N +  G+
Sbjct: 429  SMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGL 488

Query: 1610 NGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            +   G   D K+ G++EP  VK+++ K A E A+ +LRID
Sbjct: 489  DLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRID 528


>ref|XP_003362230.1| PREDICTED: t-complex protein 1 subunit epsilon, partial [Sus scrofa].
          Length = 487

 Score =  266 bits (679), Expect = 3e-71
 Identities = 162/497 (32%), Positives = 279/497 (56%), Gaps = 2/497 (0%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            +I AAK +A+ ++T LGP  + KM++D  G + +TNDG  IL  + V H  AK M+E+S+
Sbjct: 2    HIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSK 61

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
            +QD+E+GDGTT V++LAG +L  AE  L++ +HP  +   Y +A    I  L   +T   
Sbjct: 62   SQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDXXTT--- 118

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 784
                          + +KV++        IA++AV TV   +  R+++D  +  +VE   
Sbjct: 119  --------------LGSKVVNSCHRQMAEIAVNAVLTV--ADMQRRDVDF-ELIKVEGKV 161

Query: 785  GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 964
            GG +ED+ +++GV+++KD +HP+M + +++ +I +L    E  K +++  +++T  ED+ 
Sbjct: 162  GGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 221

Query: 965  RILQMEEEYIQQLCEDIIHLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIAR 1144
             + + E+E  +++   I     ++ I + G  D A H L++ N+ A+R V   +   IA 
Sbjct: 222  ALQKYEKEKFEEMIRQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 281

Query: 1145 ACGARIVSRPEELREEDIGTGAGLLEIKKIG--DEYFTFITECKDPKACTILLRGASKEI 1318
            A G RIV R  EL  E +G  AGL++    G   +    I +CK+ +A TI +RG +K I
Sbjct: 282  ATGGRIVPRFSELTPEKLGF-AGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMI 340

Query: 1319 LSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQA 1498
            + E +R+L DA+ V RN++ D ++V GGGA+E+A A A+++++  +   ++        A
Sbjct: 341  IEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIACALAVSQEADKVKRGDRXXXXXXXXA 400

Query: 1499 LEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKL 1678
            LEVIP  L +N G + I+ +T +RA+  +E     G++       DMK+  + E L  K 
Sbjct: 401  LEVIPMALAENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKK 460

Query: 1679 QTYKTAVETAVLLLRID 1729
            Q    A +   ++L+ID
Sbjct: 461  QQISLATQMVRMILKID 477


>ref|XP_003124509.2| PREDICTED: t-complex protein 1 subunit zeta-like isoform 1 [Sus
            scrofa].
          Length = 531

 Score =  264 bits (674), Expect = 1e-70
 Identities = 148/504 (29%), Positives = 286/504 (56%), Gaps = 9/504 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI+AA+ + D++RT LGPK  MKML+   G I +T DGN +L E+Q+QHP A  + +++ 
Sbjct: 23   NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 82

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A +  +  L+++    +
Sbjct: 83   AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE 142

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 784
              +R+ ++++  +S+ TKV +  + +     +D+V  ++ ++   + ID+     + ++ 
Sbjct: 143  M-DRETLIDVARTSLRTKVHAELADVLTEAVVDSVLAIKKQD---EPIDL-FMVEIMEMK 197

Query: 785  GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 964
                 D+ ++RG++++    HP M++ +++  I+  + SLEY+K E  +       E+  
Sbjct: 198  HKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEERE 257

Query: 965  RILQMEEEYIQQLCEDIIHLKPD---------VVITEKGISDLAQHYLMRANITAIRRVR 1117
            ++++ E ++I+   + I+ LK           VVI +KGI   +   L +  I A+RR +
Sbjct: 258  KLVRAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAK 317

Query: 1118 KTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 1297
            + +  R+  ACG   ++  ++L  + +G  AGL+    +G+E FTFI +C +P++ T+L+
Sbjct: 318  RRNMERLTLACGGVALNSLDDLNPDCLG-HAGLVYEYTLGEEKFTFIEKCNNPRSVTLLI 376

Query: 1298 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWP 1477
            +G +K  L++++  ++D ++  +N + D  +VPG GA E+A+A AL +   ++ G  Q  
Sbjct: 377  KGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKYKPSVKGRAQLG 436

Query: 1478 YRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIW 1657
             +A A AL +IP+ L QN G      L  ++A+H+ E+ +  GV+  TG  +   E+GIW
Sbjct: 437  VQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHS-ESGQLVGVDLNTGEPMVAAEVGIW 495

Query: 1658 EPLAVKLQTYKTAVETAVLLLRID 1729
            +   VK Q   +    A  +L +D
Sbjct: 496  DNYCVKKQLLHSCTVIATNILLVD 519


>ref|XP_003354567.1| PREDICTED: t-complex protein 1 subunit zeta-like isoform 2 [Sus
            scrofa].
          Length = 494

 Score =  230 bits (587), Expect = 2e-60
 Identities = 143/504 (28%), Positives = 266/504 (52%), Gaps = 9/504 (1%)
 Frame = +2

Query: 245  NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISR 424
            NI+AA+ + D++RT LGPK  MKML+   G I +T DGN +L E+Q+QHP A  + +++ 
Sbjct: 23   NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 82

Query: 425  TQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISTPVD 604
             QD+  GDGTTS +++ GE+L  A+ ++ + +HP ++   +  A +  +  L+++    +
Sbjct: 83   AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKE 142

Query: 605  TNNRDMMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIP 784
             + R+ ++++  +S+ TKV +  + +     +D+V  ++ ++   + ID+     +E   
Sbjct: 143  MD-RETLIDVARTSLRTKVHAELADVLTEAVVDSVLAIKKQD---EPIDLFMVEIME--- 195

Query: 785  GGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFT 964
                         M +K  T  R            ++S   YK  E +            
Sbjct: 196  -------------MKHKSETDTRE-----------VNSGFFYKSAEERE----------- 220

Query: 965  RILQMEEEYIQQLCEDIIHLKPDV---------VITEKGISDLAQHYLMRANITAIRRVR 1117
            ++++ E ++I+   + I+ LK  V         VI +KGI   +   L +  I A+RR +
Sbjct: 221  KLVRAERKFIEDRVKKIVELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIVALRRAK 280

Query: 1118 KTDNNRIARACGARIVSRPEELREEDIGTGAGLLEIKKIGDEYFTFITECKDPKACTILL 1297
            + +  R+  ACG   ++  ++L  + +G  AGL+    +G+E FTFI +C +P++ T+L+
Sbjct: 281  RRNMERLTLACGGVALNSLDDLNPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLI 339

Query: 1298 RGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWP 1477
            +G +K  L++++  ++D ++  +N + D  +VPG GA E+A+A AL +   ++ G  Q  
Sbjct: 340  KGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKYKPSVKGRAQLG 399

Query: 1478 YRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIW 1657
             +A A AL +IP+ L QN G      L  ++A+H+ E+ +  GV+  TG  +   E+GIW
Sbjct: 400  VQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHS-ESGQLVGVDLNTGEPMVAAEVGIW 458

Query: 1658 EPLAVKLQTYKTAVETAVLLLRID 1729
            +   VK Q   +    A  +L +D
Sbjct: 459  DNYCVKKQLLHSCTVIATNILLVD 482


>ref|NP_001163991.1| T-complex protein 1 subunit beta [Sus scrofa].
          Length = 535

 Score =  225 bits (574), Expect = 5e-59
 Identities = 158/529 (29%), Positives = 274/529 (51%), Gaps = 8/529 (1%)
 Frame = +2

Query: 167  AMMGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPM--GGI 340
            A +   PV +       E     +  +   A  I D++++ LGPK M K+LL       +
Sbjct: 2    ASLSLAPVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASL 61

Query: 341  VMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQM 520
            ++TNDG  IL+ I V +PAAK ++++SR QD+EVGDGTTSV +LA E+L  AE  + +++
Sbjct: 62   MVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKI 121

Query: 521  HPTVVISAYRKALDDMISTLKKISTPVDTNN-----RDMMLNIINSSITTKVISRWSSLA 685
            HP  +I+ +R+A       L  +++ VD  +     R  ++NI  +++++K+++      
Sbjct: 122  HPQTIIAGWREATKAARQAL--LNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHF 179

Query: 686  CNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRY 865
              +A++AV  ++   N      IKK        GG + DS +  G +++K +   + +R 
Sbjct: 180  TKLAVEAVLRLKGSGNLEAIHVIKKL-------GGSLADSYLDEGFLLDKKIGVNQPKR- 231

Query: 866  IKNPRIVLLDSSLEYKKGES-QTDIEITREEDFTRILQMEEEYIQQLCEDIIHLKPDVVI 1042
            I+N +I++ ++ ++  K +   + + +        I   E+E +++  E I+    +  I
Sbjct: 232  IENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFI 291

Query: 1043 TEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDIGTGAGLLE 1222
              + I +  +     A + AI         R+A   G  I S  +      +G+   L+E
Sbjct: 292  NRQLIYNYPEQLFGAAGVMAIEHADFAGVERLALVTGGEIASTFDHPELVKLGS-CKLIE 350

Query: 1223 IKKIGDEYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGG 1402
               IG++     +     +ACTI+LRGA+++IL E ER+L DA+ V    + D + V GG
Sbjct: 351  EVMIGEDKLIHFSGVALGEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRTVYGG 410

Query: 1403 GASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHT 1582
            G SEM +AHA+T+ +    G E     + A+AL ++P  +  N G  +  L+  LRA H+
Sbjct: 411  GCSEMLMAHAVTQLANRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHS 470

Query: 1583 QENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRID 1729
            + N  T G++ + GT+ DM  LGI E   VK Q   +A E A ++LR+D
Sbjct: 471  EGN-TTAGLDMKEGTIGDMAVLGITESFQVKRQVLLSAAEAAEVILRVD 518


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,300,336
Number of extensions: 1416265
Number of successful extensions: 6305
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 6245
Number of HSP's successfully gapped: 22
Length of query: 576
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 472
Effective length of database: 8,754,644
Effective search space: 4132191968
Effective search space used: 4132191968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007279
         (1730 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr04                                                         492   e-136

>Sscrofa_Chr04 
||          Length = 143465943

 Score =  492 bits (248), Expect = e-136
 Identities = 248/248 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1324      ggaagtagaacgcaacctccaggatgccatgcaagtgtgccgcaatgttctcctggaccc 1383
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102451826 ggaagtagaacgcaacctccaggatgccatgcaagtgtgccgcaatgttctcctggaccc 102451885

                                                                             
Query: 1384      tcagctcgtgccagggggtggggcttctgagatggctgtggctcatgccttgacagaaaa 1443
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102451886 tcagctcgtgccagggggtggggcttctgagatggctgtggctcatgccttgacagaaaa 102451945

                                                                             
Query: 1444      atccaaggcgatgactggtgtggaacaatggccatatcgggctgttgcccaggccctgga 1503
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102451946 atccaaggcgatgactggtgtggaacaatggccatatcgggctgttgcccaggccctgga 102452005

                                                                             
Query: 1504      ggtcattcctcgtacccttatccagaactgtggggccagcaccatccgtttacttacctc 1563
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102452006 ggtcattcctcgtacccttatccagaactgtggggccagcaccatccgtttacttacctc 102452065

                         
Query: 1564      ccttcggg 1571
                 ||||||||
Sbjct: 102452066 ccttcggg 102452073



 Score =  398 bits (201), Expect = e-108
 Identities = 201/201 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         gtgccggtcagtgagatgggtgcggtgattgggggcgcccgggagggtagcggggttggg 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102435526 gtgccggtcagtgagatgggtgcggtgattgggggcgcccgggagggtagcggggttggg 102435585

                                                                             
Query: 61        tgtaagccctgaggaggcagcgttttctgggcttctcgctggttctctctctccagaagg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102435586 tgtaagccctgaggaggcagcgttttctgggcttctcgctggttctctctctccagaagg 102435645

                                                                             
Query: 121       ttctgccggttccccctgctttgggtacccggctctgcatcgcgccgccatgatgggcca 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102435646 ttctgccggttccccctgctttgggtacccggctctgcatcgcgccgccatgatgggcca 102435705

                                      
Query: 181       tcgtccggtgctcgtgcttag 201
                 |||||||||||||||||||||
Sbjct: 102435706 tcgtccggtgctcgtgcttag 102435726



 Score =  375 bits (189), Expect = e-101
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                             
Query: 590       agtactcccgttgacaccaataaccgagatatgatgctgaacatcatcaatagttccatt 649
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102444966 agtactcccgttgacaccaataaccgagatatgatgctgaacatcatcaatagttccatt 102445025

                                                                             
Query: 650       actaccaaagtaatcagtcggtggtcgtctttggcatgcaacattgctctggatgctgtc 709
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102445026 actaccaaagtaatcagtcggtggtcgtctttggcatgcaacattgctctggatgctgtc 102445085

                                                                             
Query: 710       aaaactgtacagtttgaggagaatggtcggaaggagattgacattaagaaatatgcaaga 769
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102445086 aaaactgtacagtttgaggagaatggtcggaaggagattgacattaagaaatatgcaaga 102445145

                          
Query: 770       gtggaaaag 778
                 |||||||||
Sbjct: 102445146 gtggaaaag 102445154



 Score =  367 bits (185), Expect = 1e-98
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1141      tagagcctgtggggcccggatagtcagccgaccagaggaactaagagaagaagatattgg 1200
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102450724 tagagcctgtggggcccggatagtcagccgaccagaggaactaagagaagaagatattgg 102450783

                                                                             
Query: 1201      gacaggagcaggcctgttggaaatcaagaaaattggagatgagtactttacattcattac 1260
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102450784 gacaggagcaggcctgttggaaatcaagaaaattggagatgagtactttacattcattac 102450843

                                                                             
Query: 1261      tgagtgtaaagaccccaaagcctgtaccattctcctccggggggccagcaaagagattct 1320
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102450844 tgagtgtaaagaccccaaagcctgtaccattctcctccggggggccagcaaagagattct 102450903

                      
Query: 1321      ctcgg 1325
                 |||||
Sbjct: 102450904 ctcgg 102450908



 Score =  301 bits (152), Expect = 7e-79
 Identities = 152/152 (100%)
 Strand = Plus / Plus

                                                                             
Query: 777       agatacctgggggcatcattgaagattcatgtgtcttacgtggagttatgattaacaagg 836
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102447337 agatacctgggggcatcattgaagattcatgtgtcttacgtggagttatgattaacaagg 102447396

                                                                             
Query: 837       atgtgacccatccacgaatgcgccgctatatcaagaaccctcgaattgtgctgctggatt 896
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102447397 atgtgacccatccacgaatgcgccgctatatcaagaaccctcgaattgtgctgctggatt 102447456

                                                 
Query: 897       cttctctggaatacaagaaaggagaaagccag 928
                 ||||||||||||||||||||||||||||||||
Sbjct: 102447457 cttctctggaatacaagaaaggagaaagccag 102447488



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                             
Query: 926       cagactgacattgagatcacacgagaggaagacttcacccgaattctccaaatggaagaa 985
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102449012 cagactgacattgagatcacacgagaggaagacttcacccgaattctccaaatggaagaa 102449071

                                                                             
Query: 986       gagtacattcagcagctctgtgaggatattatccatctgaagcctgatgtggtcatcaca 1045
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102449072 gagtacattcagcagctctgtgaggatattatccatctgaagcctgatgtggtcatcaca 102449131

                                 
Query: 1046      gaaaagggcatctcag 1061
                 ||||||||||||||||
Sbjct: 102449132 gaaaagggcatctcag 102449147



 Score =  256 bits (129), Expect = 4e-65
 Identities = 132/133 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1570      ggccaagcacacccaggagaattgtgagacctggggtgtgaatggtgagacaggtactct 1629
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102452341 ggccaagcacacccaggagaattgtgagacctggggtgtgaatggtgagacaggtactct 102452400

                                                                             
Query: 1630      ggtggacatgaaagaactgggcatctgggaaccgttggctgtaaagctacaaacgtacaa 1689
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 102452401 ggtggacatgaaagaactgggcatctgggaaccattggctgtaaagctacaaacgtacaa 102452460

                              
Query: 1690      gactgcagtggag 1702
                 |||||||||||||
Sbjct: 102452461 gactgcagtggag 102452473



 Score =  228 bits (115), Expect = 8e-57
 Identities = 118/119 (99%)
 Strand = Plus / Plus

                                                                             
Query: 473       gcgggggagatgctgtctgtggctgagcacttcctagagcagcagatgcacccaactgtg 532
                 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 102442528 gcgggggagatgctgtctgtggctgagcacttcctggagcagcagatgcacccaactgtg 102442587

                                                                            
Query: 533       gtgatcagtgcttatcgcaaggcattggatgacatgatcagcactcttaagaaaataag 591
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102442588 gtgatcagtgcttatcgcaaggcattggatgacatgatcagcactcttaagaaaataag 102442646



 Score =  168 bits (85), Expect = 6e-39
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1059      cagatttagctcagcactacctcatgagggccaatatcacagccatccgcagagtccgga 1118
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102449322 cagatttagctcagcactacctcatgagggccaatatcacagccatccgcagagtccgga 102449381

                                          
Query: 1119      agacagacaataatcgcattgctag 1143
                 |||||||||||||||||||||||||
Sbjct: 102449382 agacagacaataatcgcattgctag 102449406



 Score =  123 bits (62), Expect = 3e-25
 Identities = 62/62 (100%)
 Strand = Plus / Plus

                                                                             
Query: 201       gccagaacacaaagcgtgaatctggaagaaaagttcagtctggaaacatcaatgctgcca 260
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102437791 gccagaacacaaagcgtgaatctggaagaaaagttcagtctggaaacatcaatgctgcca 102437850

                   
Query: 261       ag 262
                 ||
Sbjct: 102437851 ag 102437852



 Score =  113 bits (57), Expect = 3e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                             
Query: 312       agatgcttttggacccaatgggaggcattgtgatgaccaatgatggcaatgccattcttc 371
                 ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 102439149 agatgctttcggacccaatgggaggcatcgtgatgaccaatgatggcaatgccattcttc 102439208

                      
Query: 372       gagag 376
                 |||||
Sbjct: 102439209 gagag 102439213



 Score =  105 bits (53), Expect = 8e-20
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                      
Query: 261       agactattgcagatatcatccgaacatgtttgggacccaagtccatgatgaag 313
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102439017 agactattgcagatatcatccgaacatgtttgggacccaagtccatgatgaag 102439069



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                               
Query: 1701      agacggcagtcctgctgctgcggattgatg 1730
                 ||||||||||||||||||||||||||||||
Sbjct: 102453072 agacggcagtcctgctgctgcggattgatg 102453101


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,397,188
Number of extensions: 216
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 13
Length of query: 1730
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1708
Effective length of database: 2,808,408,574
Effective search space: 4796761844392
Effective search space used: 4796761844392
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)