Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007286
(1237 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001192722.1| interferon regulatory factor 2 [Bos taurus]. 593 e-169
Alignment gi|XP_002698698.1| PREDICTED: interferon regulatory factor 2 [B... 593 e-169
Alignment gi|NP_001178190.1| interferon regulatory factor 1 [Bos taurus]. 208 7e-54
Alignment gi|NP_001193091.1| interferon regulatory factor 4 [Bos taurus]. 118 1e-26
Alignment gi|XP_002697657.1| PREDICTED: interferon regulatory factor 4-li... 118 1e-26
Alignment gi|NP_001030542.1| interferon regulatory factor 5 [Bos taurus]. 115 1e-25
Alignment gi|XP_002692330.1| PREDICTED: interferon regulatory factor 10-l... 115 1e-25
Alignment gi|XP_875833.2| PREDICTED: interferon regulatory factor 10-like... 115 1e-25
Alignment gi|NP_001077238.1| interferon regulatory factor 8 [Bos taurus]. 113 3e-25
Alignment gi|NP_001070402.1| interferon regulatory factor 6 [Bos taurus]. 110 3e-24
>ref|NP_001192722.1| interferon regulatory factor 2 [Bos taurus].
Length = 349
Score = 593 bits (1529), Expect = e-169
Identities = 284/316 (89%), Positives = 293/316 (92%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSN IPGLKWL+KEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNMIPGLKWLSKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPG+DKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP+SERPS
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPMSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
EDRVKHIKQEP+ES LGLSNGVSDLSPEYAVLTS IK EVDSTVNIIVVGQ
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPIESPLGLSNGVSDLSPEYAVLTSTIKTEVDSTVNIIVVGQ 180
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 899
SHLD T EDQEIV NPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP
Sbjct: 181 SHLDGTYEDQEIVANPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 240
Query: 900 SDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCPVP 1079
SDEES+EGRPHWRKR++EGKQYLSNMG R YLLPSMATFVTSNKPDLQVT+KEESCPVP
Sbjct: 241 SDEESAEGRPHWRKRSVEGKQYLSNMGPRNTYLLPSMATFVTSNKPDLQVTIKEESCPVP 300
Query: 1080 YNSSWPPFPELPSQPP 1127
YNSSWPPFP+LP P
Sbjct: 301 YNSSWPPFPDLPITAP 316
>ref|XP_002698698.1| PREDICTED: interferon regulatory factor 2 [Bos taurus].
Length = 349
Score = 593 bits (1529), Expect = e-169
Identities = 284/316 (89%), Positives = 293/316 (92%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSN IPGLKWL+KEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNMIPGLKWLSKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPG+DKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP+SERPS
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPMSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
EDRVKHIKQEP+ES LGLSNGVSDLSPEYAVLTS IK EVDSTVNIIVVGQ
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPIESPLGLSNGVSDLSPEYAVLTSTIKTEVDSTVNIIVVGQ 180
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 899
SHLD T EDQEIV NPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP
Sbjct: 181 SHLDGTYEDQEIVANPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 240
Query: 900 SDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCPVP 1079
SDEES+EGRPHWRKR++EGKQYLSNMG R YLLPSMATFVTSNKPDLQVT+KEESCPVP
Sbjct: 241 SDEESAEGRPHWRKRSVEGKQYLSNMGPRNTYLLPSMATFVTSNKPDLQVTIKEESCPVP 300
Query: 1080 YNSSWPPFPELPSQPP 1127
YNSSWPPFP+LP P
Sbjct: 301 YNSSWPPFPDLPITAP 316
>ref|NP_001178190.1| interferon regulatory factor 1 [Bos taurus].
Length = 322
Score = 208 bits (530), Expect = 7e-54
Identities = 120/274 (43%), Positives = 165/274 (60%), Gaps = 9/274 (3%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP +
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKSQR 120
Query: 540 XXXXXXXXXEDRVKHIKQ-----EPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNI 704
+ R K K+ P S GLS+ S L +++ T +++ + ++I
Sbjct: 121 KERKSKSSRDARSKAKKKPYGEYSPDTFSDGLSS--STLPDDHSNYT--VRSYMGQDLDI 176
Query: 705 IVVGQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESET 884
+ L + + + P+ VE+ P S S+LY Q+SP+ S +E+ T
Sbjct: 177 ----ERTLTPALSPCGVSSTLPNWSIPVEIV------PDSTSDLYNFQVSPMPSTSEAAT 226
Query: 885 TD----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+ + D + W++ +++GK YL N
Sbjct: 227 DEDEEGKLTEDIMKLLEQTGWQQTSVDGKGYLLN 260
>ref|NP_001193091.1| interferon regulatory factor 4 [Bos taurus].
Length = 451
Score = 118 bits (295), Expect = 1e-26
Identities = 50/107 (46%), Positives = 74/107 (69%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R WL +QI+S PGL W N+EK IF+IPW HA + ++ E+DA LF+ WA+ GK +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP 518
G+DKPDP TWK RCA+N D EE+ ++S ++ ++VYR++P
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVP 129
>ref|XP_002697657.1| PREDICTED: interferon regulatory factor 4-like [Bos taurus].
Length = 451
Score = 118 bits (295), Expect = 1e-26
Identities = 50/107 (46%), Positives = 74/107 (69%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R WL +QI+S PGL W N+EK IF+IPW HA + ++ E+DA LF+ WA+ GK +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP 518
G+DKPDP TWK RCA+N D EE+ ++S ++ ++VYR++P
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVP 129
>ref|NP_001030542.1| interferon regulatory factor 5 [Bos taurus].
Length = 499
Score = 115 bits (287), Expect = 1e-25
Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
+P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 10 LPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSHDGDNTIFKAWAK 69
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
TGK+ GVD+ DP WKAN RCA+N D + D ++VY + P+
Sbjct: 70 ETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKVYEVCSNGPAPA- 128
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSL-GLS 623
ED + ++E ++ L GLS
Sbjct: 129 ----ESQPSEDNAEEEEEEELQKMLPGLS 153
>ref|XP_002692330.1| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 115 bits (287), Expect = 1e-25
Identities = 51/107 (47%), Positives = 70/107 (65%)
Frame = +3
Query: 195 MRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKH 374
+R+R WL QI S GL+W + K +F+IPW HAA+ G+ V +DA LFR WAI+ GK+
Sbjct: 27 LRLREWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKY 86
Query: 375 QPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRML 515
G+DK DP TWK RCA+N D EV ++S +N ++VYR+L
Sbjct: 87 LEGIDKEDPSTWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRLL 133
>ref|XP_875833.2| PREDICTED: interferon regulatory factor 10-like [Bos taurus].
Length = 460
Score = 115 bits (287), Expect = 1e-25
Identities = 51/107 (47%), Positives = 70/107 (65%)
Frame = +3
Query: 195 MRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKH 374
+R+R WL QI S GL+W + K +F+IPW HAA+ G+ V +DA LFR WAI+ GK+
Sbjct: 27 LRLREWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAKQGYQVRQDAALFRAWAIYKGKY 86
Query: 375 QPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRML 515
G+DK DP TWK RCA+N D EV ++S +N ++VYR+L
Sbjct: 87 LEGIDKEDPSTWKTRLRCALNKSADFCEVPERSQLDISNPYKVYRLL 133
>ref|NP_001077238.1| interferon regulatory factor 8 [Bos taurus].
Length = 426
Score = 113 bits (283), Expect = 3e-25
Identities = 52/111 (46%), Positives = 72/111 (64%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
R+R WL EQI+S PGL W N EK +F+IPW HA + ++ E DA +F+ WA+ GK +
Sbjct: 9 RLRQWLIEQIDSTMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSER 530
G DK +P TWK RCA+N PD EEV D+S + ++VYR++P E+
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQ 118
>ref|NP_001070402.1| interferon regulatory factor 6 [Bos taurus].
Length = 467
Score = 110 bits (274), Expect = 3e-24
Identities = 46/112 (41%), Positives = 71/112 (63%)
Frame = +3
Query: 192 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 371
R+R++PWL Q++S PGL WL+++ K FQIPW HA RH E++ +F+ WA+ TGK
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 372 HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSE 527
+Q GVD PDP WKA RCA+N + + D + + N ++Y++ + +
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQ 118
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,073,720
Number of extensions: 1464906
Number of successful extensions: 8157
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 7984
Number of HSP's successfully gapped: 13
Length of query: 412
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,207,134
Effective search space: 4361590138
Effective search space used: 4361590138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007286
(1237 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848907.1| PREDICTED: similar to interferon regulatory fac... 606 e-173
Alignment gi|XP_532847.2| PREDICTED: similar to interferon regulatory fac... 569 e-162
Alignment gi|XP_857502.1| PREDICTED: similar to interferon regulatory fac... 552 e-157
Alignment gi|XP_857541.1| PREDICTED: similar to Interferon regulatory fac... 301 6e-82
Alignment gi|XP_857460.1| PREDICTED: similar to Interferon regulatory fac... 259 3e-69
Alignment gi|XP_538621.2| PREDICTED: similar to Interferon regulatory fac... 210 2e-54
Alignment gi|XP_546793.2| PREDICTED: similar to interferon regulatory fac... 116 5e-26
Alignment gi|XP_852252.1| PREDICTED: similar to Interferon regulatory fac... 115 1e-25
Alignment gi|XP_539383.2| PREDICTED: similar to interferon regulatory fac... 112 1e-24
Alignment gi|XP_537138.2| PREDICTED: similar to Interferon regulatory fac... 110 4e-24
>ref|XP_848907.1| PREDICTED: similar to interferon regulatory factor 2 isoform 2 [Canis
familiaris].
Length = 349
Score = 606 bits (1563), Expect = e-173
Identities = 295/318 (92%), Positives = 299/318 (94%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
EDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 180
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 899
SHLDS I+DQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP
Sbjct: 181 SHLDSNIDDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 240
Query: 900 SDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCPVP 1079
SDEES EGRPHWRKRNIEGKQYLSNMGTR+ YLLPSMATFVTSNKPDLQVT+KEESCPVP
Sbjct: 241 SDEESVEGRPHWRKRNIEGKQYLSNMGTRSTYLLPSMATFVTSNKPDLQVTIKEESCPVP 300
Query: 1080 YNSSWPPFPELPSQPPGT 1133
YNSSWP P+LP P T
Sbjct: 301 YNSSWPTLPDLPLPPSVT 318
>ref|XP_532847.2| PREDICTED: similar to interferon regulatory factor 2 isoform 1 [Canis
familiaris].
Length = 347
Score = 569 bits (1467), Expect = e-162
Identities = 283/318 (88%), Positives = 290/318 (91%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
EDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ
Sbjct: 121 KGKKPKTEKEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 180
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 899
SHLDS I+DQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP
Sbjct: 181 SHLDSNIDDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 240
Query: 900 SDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCPVP 1079
SDEES E + ++ KQYLSNMGTR+ YLLPSMATFVTSNKPDLQVT+KEESCPVP
Sbjct: 241 SDEESVEKQLVQVAKS--SKQYLSNMGTRSTYLLPSMATFVTSNKPDLQVTIKEESCPVP 298
Query: 1080 YNSSWPPFPELPSQPPGT 1133
YNSSWP P+LP P T
Sbjct: 299 YNSSWPTLPDLPLPPSVT 316
>ref|XP_857502.1| PREDICTED: similar to interferon regulatory factor 2 isoform 4 [Canis
familiaris].
Length = 351
Score = 552 bits (1423), Expect = e-157
Identities = 277/322 (86%), Positives = 285/322 (88%), Gaps = 4/322 (1%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIK----QEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNII 707
EDRVKHIK ++ + NGVSDLSPEYAVLTSAIKNEVDSTVNII
Sbjct: 121 KGKKPKTEKEDRVKHIKVIFGGSDEKAKVVTVNGVSDLSPEYAVLTSAIKNEVDSTVNII 180
Query: 708 VVGQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETT 887
VVGQSHLDS I+DQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETT
Sbjct: 181 VVGQSHLDSNIDDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETT 240
Query: 888 DSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEES 1067
DSVPSDEES E + RNIEGKQYLSNMGTR+ YLLPSMATFVTSNKPDLQVT+KEES
Sbjct: 241 DSVPSDEESVEQK--HLHRNIEGKQYLSNMGTRSTYLLPSMATFVTSNKPDLQVTIKEES 298
Query: 1068 CPVPYNSSWPPFPELPSQPPGT 1133
CPVPYNSSWP P+LP P T
Sbjct: 299 CPVPYNSSWPTLPDLPLPPSVT 320
>ref|XP_857541.1| PREDICTED: similar to Interferon regulatory factor 2 (IRF-2) isoform
5 [Canis familiaris].
Length = 294
Score = 301 bits (772), Expect = 6e-82
Identities = 175/320 (54%), Positives = 202/320 (63%), Gaps = 2/320 (0%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLN K+ +F+ +
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLN---------------------KEKKIFQIPWM 39
Query: 360 HTGKHQPGVDKPDP--KTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERP 533
H +H V+K P + W + P +++ K+ K FR ++ P
Sbjct: 40 HAARHGWDVEKDAPLFRNWAIH---TGKHQPGVDKPDPKTWKAN---FRC----AMNSLP 89
Query: 534 SXXXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVV 713
++ +K + ++ + + V +E S VV
Sbjct: 90 D-------------IEEVKDKSIKKG----------NNAFRVYRMLPLSERPSKK---VV 123
Query: 714 GQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDS 893
GQSHLDS I+DQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDS
Sbjct: 124 GQSHLDSNIDDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDS 183
Query: 894 VPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCP 1073
VPSDEES EGRPHWRKRNIEGKQYLSNMGTR+ YLLPSMATFVTSNKPDLQVT+KEESCP
Sbjct: 184 VPSDEESVEGRPHWRKRNIEGKQYLSNMGTRSTYLLPSMATFVTSNKPDLQVTIKEESCP 243
Query: 1074 VPYNSSWPPFPELPSQPPGT 1133
VPYNSSWP P+LP P T
Sbjct: 244 VPYNSSWPTLPDLPLPPSVT 263
>ref|XP_857460.1| PREDICTED: similar to Interferon regulatory factor 2 (IRF-2)
isoform 3 [Canis familiaris].
Length = 125
Score = 259 bits (663), Expect = 3e-69
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 119
>ref|XP_538621.2| PREDICTED: similar to Interferon regulatory factor 1 (IRF-1) [Canis
familiaris].
Length = 321
Score = 210 bits (535), Expect = 2e-54
Identities = 118/273 (43%), Positives = 160/273 (58%), Gaps = 8/273 (2%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP +
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLG-LSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVG 716
+ + K ++ +SS S+G+S TS + ++ S
Sbjct: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLS---------TSTLPDDHSS-----YTA 166
Query: 717 QSHLDSTIEDQEIVTNPPDICQVVEVTTE---SDEQPVSMSELYPLQISPVSSYAESETT 887
++ +E + +T C V + + P S S+LY Q+SP+ S +E+ T
Sbjct: 167 HGYMGQDLEVERDLTPALSPCAVTSTLPDWHIPEIVPDSTSDLYSFQVSPMPSTSEATTD 226
Query: 888 D----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+ + D + W+ N++GK YL N
Sbjct: 227 EDEEGKLTEDIMKLLEQTGWQPTNVDGKGYLLN 259
>ref|XP_546793.2| PREDICTED: similar to interferon regulatory factor 8 [Canis
familiaris].
Length = 426
Score = 116 bits (290), Expect = 5e-26
Identities = 53/111 (47%), Positives = 73/111 (65%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
R+R WL EQI+SN PGL W N EK +F+IPW HA + ++ E DA +F+ WA+ GK +
Sbjct: 9 RLRQWLIEQIDSNMYPGLIWENDEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSER 530
G DK +P TWK RCA+N PD EEV D+S + ++VYR++P E+
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQ 118
>ref|XP_852252.1| PREDICTED: similar to Interferon regulatory factor 4 (IRF-4)
(Lymphocyte specific interferon regulatory factor)
(LSIRF) (NF-EM5) (Multiple myeloma oncogene 1) [Canis
familiaris].
Length = 328
Score = 115 bits (287), Expect = 1e-25
Identities = 50/107 (46%), Positives = 71/107 (66%)
Frame = +3
Query: 195 MRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKH 374
+R+R WL QI S GL+W + K +F+IPW HAA+ G+ ++DA LFR WAI+ GKH
Sbjct: 8 LRLRDWLVAQIESGRYAGLRWEDAGKTLFRIPWKHAAQQGYRAQQDAALFRAWAIYKGKH 67
Query: 375 QPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRML 515
G+DK DP TWK RCA+N D EV+++S +N ++VYR++
Sbjct: 68 LEGIDKEDPPTWKTRLRCALNKSADFCEVRERSQLDVSNPYKVYRIV 114
>ref|XP_539383.2| PREDICTED: similar to interferon regulatory factor 5 isoform a
[Canis familiaris].
Length = 569
Score = 112 bits (279), Expect = 1e-24
Identities = 50/118 (42%), Positives = 68/118 (57%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N E+K F IPW HA RHG E D +F+ WA
Sbjct: 76 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFCIPWRHATRHGPSQEGDNTIFKAWAKE 135
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 136 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGSAPA 193
>ref|XP_537138.2| PREDICTED: similar to Interferon regulatory factor 6 (IRF-6) [Canis
familiaris].
Length = 531
Score = 110 bits (274), Expect = 4e-24
Identities = 46/112 (41%), Positives = 71/112 (63%)
Frame = +3
Query: 192 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 371
R+R++PWL Q++S PGL WL+++ K FQIPW HA RH E++ +F+ WA+ TGK
Sbjct: 76 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 135
Query: 372 HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSE 527
+Q GVD PDP WKA RCA+N + + D + + N ++Y++ + +
Sbjct: 136 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQ 187
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,289,724
Number of extensions: 1515824
Number of successful extensions: 8458
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 8285
Number of HSP's successfully gapped: 15
Length of query: 412
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 307
Effective length of database: 15,374,224
Effective search space: 4719886768
Effective search space used: 4719886768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007286
(1237 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002190.2| interferon regulatory factor 2 [Homo sapiens]. 596 e-176
Alignment gi|NP_002189.1| interferon regulatory factor 1 [Homo sapiens]. 213 4e-55
Alignment gi|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Ho... 118 1e-26
Alignment gi|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo ... 118 1e-26
Alignment gi|NP_002154.1| interferon regulatory factor 8 [Homo sapiens]. 115 1e-25
Alignment gi|NP_001229381.1| interferon regulatory factor 5 isoform e [Ho... 112 7e-25
Alignment gi|NP_001092097.2| interferon regulatory factor 5 isoform b [Ho... 112 7e-25
Alignment gi|NP_001092100.1| interferon regulatory factor 5 isoform b [Ho... 112 7e-25
Alignment gi|NP_001092099.1| interferon regulatory factor 5 isoform d [Ho... 112 7e-25
Alignment gi|NP_116032.1| interferon regulatory factor 5 isoform b [Homo ... 112 7e-25
>ref|NP_002190.2| interferon regulatory factor 2 [Homo sapiens].
Length = 349
Score = 596 bits (1536), Expect(3) = e-176
Identities = 289/312 (92%), Positives = 296/312 (94%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
ED+VKHIKQEPVESSLGLSNGVSDLSPEYAVLTS IKNEVDSTVNIIVVGQ
Sbjct: 121 KGKKPKTEKEDKVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSTIKNEVDSTVNIIVVGQ 180
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 899
SHLDS IE+QEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP
Sbjct: 181 SHLDSNIENQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 240
Query: 900 SDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCPVP 1079
SDEES+EGRPHWRKRNIEGKQYLSNMGTR +YLLP MA+FVTSNKPDLQVT+KEES PVP
Sbjct: 241 SDEESAEGRPHWRKRNIEGKQYLSNMGTRGSYLLPGMASFVTSNKPDLQVTIKEESNPVP 300
Query: 1080 YNSSWPPFPELP 1115
YNSSWPPF +LP
Sbjct: 301 YNSSWPPFQDLP 312
Score = 32.7 bits (73), Expect(3) = e-176
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 1171 ASVIKKTSDFTQARVKS 1221
ASVIKKTSD TQARVKS
Sbjct: 332 ASVIKKTSDITQARVKS 348
Score = 32.0 bits (71), Expect(3) = e-176
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 1097 PVPRTPLTAPGNPAPSSSRPDRETR 1171
P PL++ PA SSSRPDRETR
Sbjct: 307 PFQDLPLSSSMTPASSSSRPDRETR 331
>ref|NP_002189.1| interferon regulatory factor 1 [Homo sapiens].
Length = 325
Score = 213 bits (541), Expect = 4e-55
Identities = 123/272 (45%), Positives = 164/272 (60%), Gaps = 7/272 (2%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP +
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLG-LSNGVSD--LSPEYAVLTSAIKNEVDSTVNIIV 710
+ + K ++ +SS S+G+S L +++ T V + +
Sbjct: 121 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYT------VPGYMQDLE 174
Query: 711 VGQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTD 890
V Q+ L + + + PD VEV P S S+LY Q+SP+ S +E+ T +
Sbjct: 175 VEQA-LTPALSPCAVSSTLPDWHIPVEVV------PDSTSDLYNFQVSPMPSTSEATTDE 227
Query: 891 ----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+P D + W+ N++GK YL N
Sbjct: 228 DEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLN 259
>ref|NP_001182215.1| interferon regulatory factor 4 isoform 2 [Homo sapiens].
Length = 450
Score = 118 bits (295), Expect = 1e-26
Identities = 50/107 (46%), Positives = 74/107 (69%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R WL +QI+S PGL W N+EK IF+IPW HA + ++ E+DA LF+ WA+ GK +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP 518
G+DKPDP TWK RCA+N D EE+ ++S ++ ++VYR++P
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVP 129
>ref|NP_002451.2| interferon regulatory factor 4 isoform 1 [Homo sapiens].
Length = 451
Score = 118 bits (295), Expect = 1e-26
Identities = 50/107 (46%), Positives = 74/107 (69%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R WL +QI+S PGL W N+EK IF+IPW HA + ++ E+DA LF+ WA+ GK +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP 518
G+DKPDP TWK RCA+N D EE+ ++S ++ ++VYR++P
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVP 129
>ref|NP_002154.1| interferon regulatory factor 8 [Homo sapiens].
Length = 426
Score = 115 bits (287), Expect = 1e-25
Identities = 52/111 (46%), Positives = 74/111 (66%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
R+R WL EQI+S+ PGL W N+EK +F+IPW HA + ++ E DA +F+ WA+ GK +
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSER 530
G DK +P TWK RCA+N PD EEV D+S + ++VYR++P E+
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQ 118
>ref|NP_001229381.1| interferon regulatory factor 5 isoform e [Homo sapiens].
Length = 412
Score = 112 bits (280), Expect = 7e-25
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPT 128
>ref|NP_001092097.2| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 112 bits (280), Expect = 7e-25
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPT 128
>ref|NP_001092100.1| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 112 bits (280), Expect = 7e-25
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPT 128
>ref|NP_001092099.1| interferon regulatory factor 5 isoform d [Homo sapiens].
Length = 514
Score = 112 bits (280), Expect = 7e-25
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPT 128
>ref|NP_116032.1| interferon regulatory factor 5 isoform b [Homo sapiens].
Length = 498
Score = 112 bits (280), Expect = 7e-25
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPT 128
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,233,800
Number of extensions: 1482264
Number of successful extensions: 8049
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 7899
Number of HSP's successfully gapped: 20
Length of query: 412
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 307
Effective length of database: 14,835,944
Effective search space: 4554634808
Effective search space used: 4554634808
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007286
(1237 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032417.3| interferon regulatory factor 2 [Mus musculus]. 593 e-172
Alignment gi|NP_001152868.1| interferon regulatory factor 1 isoform a [Mu... 213 2e-55
Alignment gi|NP_001152865.1| interferon regulatory factor 1 isoform b [Mu... 213 2e-55
Alignment gi|NP_032416.1| interferon regulatory factor 1 isoform a [Mus m... 213 2e-55
Alignment gi|NP_038702.1| interferon regulatory factor 4 [Mus musculus]. 117 1e-26
Alignment gi|NP_032346.1| interferon regulatory factor 8 [Mus musculus]. 114 2e-25
Alignment gi|NP_036187.1| interferon regulatory factor 5 [Mus musculus]. 112 6e-25
Alignment gi|NP_058547.2| interferon regulatory factor 6 [Mus musculus]. 110 3e-24
Alignment gi|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mu... 93 5e-19
Alignment gi|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mu... 93 5e-19
>ref|NP_032417.3| interferon regulatory factor 2 [Mus musculus].
Length = 349
Score = 593 bits (1530), Expect(2) = e-172
Identities = 286/318 (89%), Positives = 297/318 (93%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPG+DKPDPKTWKANFRCAMNSLPDIEEVKD+SIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGIDKPDPKTWKANFRCAMNSLPDIEEVKDRSIKKGNNAFRVYRMLPLSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
E+RVKHIKQEPVESSLGLSNGVS SPEYAVLTSAIKNEVDSTVNIIVVGQ
Sbjct: 121 KGKKPKTEKEERVKHIKQEPVESSLGLSNGVSGFSPEYAVLTSAIKNEVDSTVNIIVVGQ 180
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTDSVP 899
SHLDS IEDQEIVTNPPDICQVVEVTTESD+QPVSMSELYPLQISPVSSYAESETTDSV
Sbjct: 181 SHLDSNIEDQEIVTNPPDICQVVEVTTESDDQPVSMSELYPLQISPVSSYAESETTDSVA 240
Query: 900 SDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEESCPVP 1079
SDEE++EGRPHWRKR+IEGKQYLSNMGTR YLLPSMATFVTSNKPDLQVT+KE+SCP+P
Sbjct: 241 SDEENAEGRPHWRKRSIEGKQYLSNMGTRNTYLLPSMATFVTSNKPDLQVTIKEDSCPMP 300
Query: 1080 YNSSWPPFPELPSQPPGT 1133
YNSSWPPF +LP P T
Sbjct: 301 YNSSWPPFTDLPLPAPVT 318
Score = 32.7 bits (73), Expect(2) = e-172
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +1
Query: 1171 ASVIKKTSDFTQARVKS 1221
ASVIKKTSD TQARVKS
Sbjct: 332 ASVIKKTSDITQARVKS 348
>ref|NP_001152868.1| interferon regulatory factor 1 isoform a [Mus musculus].
Length = 329
Score = 213 bits (542), Expect = 2e-55
Identities = 120/273 (43%), Positives = 161/273 (58%), Gaps = 8/273 (2%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP R
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTR--- 117
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
E + K + ++ L VS + + +S + ++ S Q
Sbjct: 118 -----NQRKERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDDHSSYTT-----Q 167
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESETT 887
+L ++ + +T C V +E D P S ++LY LQ+SP+ S +E+ T
Sbjct: 168 GYLGQDLDMERDITPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPMPSTSEAATD 227
Query: 888 D----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+ + D + W+ +I+GK YL N
Sbjct: 228 EDEEGKIAEDLMKLFEQSEWQPTHIDGKGYLLN 260
>ref|NP_001152865.1| interferon regulatory factor 1 isoform b [Mus musculus].
Length = 304
Score = 213 bits (542), Expect = 2e-55
Identities = 120/273 (43%), Positives = 161/273 (58%), Gaps = 8/273 (2%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP R
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTR--- 117
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
E + K + ++ L VS + + +S + ++ S Q
Sbjct: 118 -----NQRKERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDDHSSYTT-----Q 167
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESETT 887
+L ++ + +T C V +E D P S ++LY LQ+SP+ S +E+ T
Sbjct: 168 GYLGQDLDMERDITPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPMPSTSEAATD 227
Query: 888 D----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+ + D + W+ +I+GK YL N
Sbjct: 228 EDEEGKIAEDLMKLFEQSEWQPTHIDGKGYLLN 260
>ref|NP_032416.1| interferon regulatory factor 1 isoform a [Mus musculus].
Length = 329
Score = 213 bits (542), Expect = 2e-55
Identities = 120/273 (43%), Positives = 161/273 (58%), Gaps = 8/273 (2%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP R
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTR--- 117
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQ 719
E + K + ++ L VS + + +S + ++ S Q
Sbjct: 118 -----NQRKERKSKSSRDTKSKTKRKLCGDVSPDTFSDGLSSSTLPDDHSSYTT-----Q 167
Query: 720 SHLDSTIEDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESETT 887
+L ++ + +T C V +E D P S ++LY LQ+SP+ S +E+ T
Sbjct: 168 GYLGQDLDMERDITPALSPCVVSSSLSEWHMQMDIIPDSTTDLYNLQVSPMPSTSEAATD 227
Query: 888 D----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+ + D + W+ +I+GK YL N
Sbjct: 228 EDEEGKIAEDLMKLFEQSEWQPTHIDGKGYLLN 260
>ref|NP_038702.1| interferon regulatory factor 4 [Mus musculus].
Length = 450
Score = 117 bits (294), Expect = 1e-26
Identities = 49/107 (45%), Positives = 74/107 (69%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R WL +QI+S PGL W N+EK +F+IPW HA + ++ E+DA LF+ WA+ GK +
Sbjct: 23 KLRQWLIDQIDSGKYPGLVWENEEKSVFRIPWKHAGKQDYNREEDAALFKAWALFKGKFR 82
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLP 518
G+DKPDP TWK RCA+N D EE+ ++S ++ ++VYR++P
Sbjct: 83 EGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISDPYKVYRIVP 129
>ref|NP_032346.1| interferon regulatory factor 8 [Mus musculus].
Length = 424
Score = 114 bits (284), Expect = 2e-25
Identities = 52/111 (46%), Positives = 73/111 (65%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
R+R WL EQI+S+ PGL W N EK +F+IPW HA + ++ E DA +F+ WA+ GK +
Sbjct: 9 RLRQWLIEQIDSSMYPGLIWENDEKTMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFK 68
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSER 530
G DK +P TWK RCA+N PD EEV D+S + ++VYR++P E+
Sbjct: 69 EG-DKAEPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVPEEEQ 118
>ref|NP_036187.1| interferon regulatory factor 5 [Mus musculus].
Length = 497
Score = 112 bits (280), Expect = 6e-25
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N EKK+F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFQLFYDGPRDMPPQPYKIYEVCSNGPAPT 128
>ref|NP_058547.2| interferon regulatory factor 6 [Mus musculus].
Length = 467
Score = 110 bits (274), Expect = 3e-24
Identities = 46/112 (41%), Positives = 71/112 (63%)
Frame = +3
Query: 192 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 371
R+R++PWL Q++S PGL WL+++ K FQIPW HA RH E++ +F+ WA+ TGK
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 372 HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSE 527
+Q GVD PDP WKA RCA+N + + D + + N ++Y++ + +
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQ 118
>ref|NP_001152890.1| interferon regulatory factor 9 isoform 2 [Mus musculus].
Length = 417
Score = 92.8 bits (229), Expect = 5e-19
Identities = 89/338 (26%), Positives = 132/338 (39%), Gaps = 27/338 (7%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA +F+ WA+ KH+
Sbjct: 29 KLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEKHK 88
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSXXXXXXX 557
G D P WK RCA+N + EEV ++ ++VYR+LP P+
Sbjct: 89 DG-DIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGTLPN------- 140
Query: 558 XXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAV-----LTSAIKNEVDSTVNIIVVGQS 722
+P +S +SPE T+ + N DS NI G
Sbjct: 141 ------------QPRNQKSPCKRSISCVSPEREENMENGRTNGVVNHSDSGSNI---GGG 185
Query: 723 HLDSTIEDQEIVTNPPDICQVVEVTTESD--EQPVSMSELYPL----------------- 845
S D +N + TTE+ E PV + PL
Sbjct: 186 GNGSNRSDSN--SNCNSELEEGAGTTEATIREDPVFLEHQLPLNSDYSLLLTFIYGGRVV 243
Query: 846 ---QISPVSSYAESETTDSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMAT 1016
Q+ + +E +DS S E+ +P +E Q+L N R
Sbjct: 244 GKTQVHSLDCRLVAERSDSESSMEQVEFPKPD----PLEPTQHLLNQLDR--------GV 291
Query: 1017 FVTSNKPDLQVTVKEESCPVPYNSSWPPFPELPSQPPG 1130
V SN L V + CP+P SW P PPG
Sbjct: 292 LVASNSRGLFV---QRLCPIPI--SW----NAPEAPPG 320
>ref|NP_001152889.1| interferon regulatory factor 9 isoform 1 [Mus musculus].
Length = 465
Score = 92.8 bits (229), Expect = 5e-19
Identities = 89/338 (26%), Positives = 132/338 (39%), Gaps = 27/338 (7%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R W+ EQ+ S PG+ W + K +F+IPW HA + + ++DA +F+ WA+ KH+
Sbjct: 77 KLRSWIVEQVESGHFPGVCWDDAAKTMFRIPWKHAGKQDFREDQDAAIFKAWALFKEKHK 136
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSXXXXXXX 557
G D P WK RCA+N + EEV ++ ++VYR+LP P+
Sbjct: 137 DG-DIGHPAVWKTRLRCALNKSSEFEEVPERGRMDVAEPYKVYRILPAGTLPN------- 188
Query: 558 XXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAV-----LTSAIKNEVDSTVNIIVVGQS 722
+P +S +SPE T+ + N DS NI G
Sbjct: 189 ------------QPRNQKSPCKRSISCVSPEREENMENGRTNGVVNHSDSGSNI---GGG 233
Query: 723 HLDSTIEDQEIVTNPPDICQVVEVTTESD--EQPVSMSELYPL----------------- 845
S D +N + TTE+ E PV + PL
Sbjct: 234 GNGSNRSDSN--SNCNSELEEGAGTTEATIREDPVFLEHQLPLNSDYSLLLTFIYGGRVV 291
Query: 846 ---QISPVSSYAESETTDSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMAT 1016
Q+ + +E +DS S E+ +P +E Q+L N R
Sbjct: 292 GKTQVHSLDCRLVAERSDSESSMEQVEFPKPD----PLEPTQHLLNQLDR--------GV 339
Query: 1017 FVTSNKPDLQVTVKEESCPVPYNSSWPPFPELPSQPPG 1130
V SN L V + CP+P SW P PPG
Sbjct: 340 LVASNSRGLFV---QRLCPIPI--SW----NAPEAPPG 368
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,420,836
Number of extensions: 1244242
Number of successful extensions: 6718
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 6577
Number of HSP's successfully gapped: 14
Length of query: 412
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 308
Effective length of database: 12,493,815
Effective search space: 3848095020
Effective search space used: 3848095020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007286
(1237 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003359517.1| PREDICTED: interferon regulatory factor 2-li... 284 6e-77
Alignment gi|XP_003133382.2| PREDICTED: interferon regulatory factor 2-li... 272 3e-73
Alignment gi|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa]. 213 1e-55
Alignment gi|XP_003134757.2| PREDICTED: interferon regulatory factor 5-li... 111 9e-25
Alignment gi|XP_003134732.1| PREDICTED: interferon regulatory factor 5-li... 111 9e-25
Alignment gi|XP_003134731.1| PREDICTED: interferon regulatory factor 5-li... 111 9e-25
Alignment gi|NP_999443.1| interferon regulatory factor 6 [Sus scrofa]. 110 2e-24
Alignment gi|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa]. 96 5e-20
Alignment gi|NP_998935.1| interferon regulatory factor 3 [Sus scrofa]. 80 3e-15
Alignment gi|XP_003359988.1| PREDICTED: interferon regulatory factor 4-li... 66 5e-11
>ref|XP_003359517.1| PREDICTED: interferon regulatory factor 2-like, partial [Sus scrofa].
Length = 185
Score = 284 bits (727), Expect = 6e-77
Identities = 138/142 (97%), Positives = 139/142 (97%)
Frame = +3
Query: 708 VVGQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETT 887
VVGQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETT
Sbjct: 13 VVGQSHLDSTIEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETT 72
Query: 888 DSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEES 1067
DSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEES
Sbjct: 73 DSVPSDEESSEGRPHWRKRNIEGKQYLSNMGTRTAYLLPSMATFVTSNKPDLQVTVKEES 132
Query: 1068 CPVPYNSSWPPFPELPSQPPGT 1133
CPVPYNSSWPPFP+LP PGT
Sbjct: 133 CPVPYNSSWPPFPDLPLTAPGT 154
>ref|XP_003133382.2| PREDICTED: interferon regulatory factor 2-like [Sus scrofa].
Length = 236
Score = 272 bits (695), Expect = 3e-73
Identities = 127/137 (92%), Positives = 127/137 (92%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
Sbjct: 1 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS
Sbjct: 61 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK 120
Query: 540 XXXXXXXXXEDRVKHIK 590
EDRVKHIK
Sbjct: 121 KGKKPKTEKEDRVKHIK 137
>ref|NP_001090882.1| interferon regulatory factor 1 [Sus scrofa].
Length = 322
Score = 213 bits (543), Expect = 1e-55
Identities = 119/274 (43%), Positives = 163/274 (59%), Gaps = 9/274 (3%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
MP+ RMRMRPWLE QINSN IPGL W+NKE+ IFQIPW HAA+HGWD+ KDA LFR+WAI
Sbjct: 1 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI 60
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSX 539
HTG+++ G +PDPKTWKANFRCAMNSLPDIEEVKD+S KG++A RVYRMLP +
Sbjct: 61 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR 120
Query: 540 XXXXXXXXXEDRVKHIKQEPVESSLG-LSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVG 716
+ + K K+ ESS S+G+S +S + ++ S
Sbjct: 121 KERKSKSSRDAKCKAKKKSCGESSPDTFSDGLS---------SSTLPDDHSS-----YTA 166
Query: 717 QSHLDSTIEDQEIVTNPPDICQVVEVTTE----SDEQPVSMSELYPLQISPVSSYAESET 884
Q ++ ++ ++ +T C + E + P S S+LY Q+SP+ S +E+ T
Sbjct: 167 QGYIGQDLDIEQALTPALSPCAISSTLPEWRIPVEIVPDSTSDLYNFQVSPMPSTSEAAT 226
Query: 885 TD----SVPSDEESSEGRPHWRKRNIEGKQYLSN 974
+ + D + W++ N++GK YL N
Sbjct: 227 DEDEEGKLTEDIMKLLEQSGWQQTNVDGKGYLLN 260
>ref|XP_003134757.2| PREDICTED: interferon regulatory factor 5-like, partial [Sus
scrofa].
Length = 366
Score = 111 bits (277), Expect = 9e-25
Identities = 49/118 (41%), Positives = 68/118 (57%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N E+K F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPA 128
>ref|XP_003134732.1| PREDICTED: interferon regulatory factor 5-like isoform 2 [Sus
scrofa].
Length = 487
Score = 111 bits (277), Expect = 9e-25
Identities = 49/118 (41%), Positives = 68/118 (57%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N E+K F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPA 128
>ref|XP_003134731.1| PREDICTED: interferon regulatory factor 5-like isoform 1 [Sus
scrofa].
Length = 503
Score = 111 bits (277), Expect = 9e-25
Identities = 49/118 (41%), Positives = 68/118 (57%)
Frame = +3
Query: 183 PVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIH 362
P R+R++PWL Q+NS PGL+W+N E+K F IPW HA RHG + D +F+ WA
Sbjct: 11 PPRRVRLKPWLVAQVNSCQYPGLQWVNGERKFFYIPWRHATRHGPSQDGDNTIFKAWAKE 70
Query: 363 TGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPS 536
TGK+ GVD+ DP WKAN RCA+N D + D +++Y + P+
Sbjct: 71 TGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPA 128
>ref|NP_999443.1| interferon regulatory factor 6 [Sus scrofa].
Length = 467
Score = 110 bits (274), Expect = 2e-24
Identities = 46/112 (41%), Positives = 71/112 (63%)
Frame = +3
Query: 192 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGK 371
R+R++PWL Q++S PGL WL+++ K FQIPW HA RH E++ +F+ WA+ TGK
Sbjct: 7 RVRLKPWLVAQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGK 66
Query: 372 HQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSE 527
+Q GVD PDP WKA RCA+N + + D + + N ++Y++ + +
Sbjct: 67 YQEGVDDPDPAKWKAQLRCALNKSREFNLMYDGTKEVPMNPVKIYQVCDIPQ 118
>ref|NP_001072138.1| interferon regulatory factor 9 [Sus scrofa].
Length = 411
Score = 95.5 bits (236), Expect = 5e-20
Identities = 66/225 (29%), Positives = 100/225 (44%)
Frame = +3
Query: 198 RMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQ 377
++R W+ EQ+ S PG+ W + K + +IPW HA + + ++DA F+ WAI GK++
Sbjct: 11 KLRNWVVEQVESGQFPGVCWDDDAKTMSRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK 70
Query: 378 PGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSXXXXXXX 557
G D P WK RCA+N + EEV + + G ++VYR+LP P+
Sbjct: 71 EG-DSEGPAIWKTRLRCALNKSTEFEEVPENGHRGGAEPYKVYRLLPPGTLPA-QPGSQK 128
Query: 558 XXXEDRVKHIKQEPVESSLGLSNGVSDLSPEYAVLTSAIKNEVDSTVNIIVVGQSHLDST 737
+ R + E E + N LSP ++L KNE+ T G H D
Sbjct: 129 LPSKRRHSSVTCEKEEDEVTTKN--CTLSP--SILQDPFKNELAETNG----GAGHSDLG 180
Query: 738 IEDQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYA 872
P+ E + D+ VS+ L P P S Y+
Sbjct: 181 SSSSSNSPESPEGRVTTEAPFQGDQ--VSLEHLLP----PNSDYS 219
>ref|NP_998935.1| interferon regulatory factor 3 [Sus scrofa].
Length = 419
Score = 79.7 bits (195), Expect = 3e-15
Identities = 40/112 (35%), Positives = 61/112 (54%)
Frame = +3
Query: 180 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI 359
M ++ R+ PWL Q+N + G+ WL++ F+IPW H R E D +F+ WA
Sbjct: 1 MGTQKPRILPWLISQLNQGQLEGVAWLDEGHTRFRIPWKHGLRQDAQQE-DFGIFQAWAE 59
Query: 360 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRML 515
+G + PG DKPD TWK NFR A+N + +D S K ++ ++Y +
Sbjct: 60 ASGAYTPGKDKPDLPTWKRNFRSALNRKEALRLAEDHS-KDPHDPHKIYEFV 110
>ref|XP_003359988.1| PREDICTED: interferon regulatory factor 4-like [Sus scrofa].
Length = 438
Score = 65.9 bits (159), Expect = 5e-11
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +3
Query: 351 WAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRML 515
WAIH GKH G+DK DP TWK RCA+N D EV+++S +N ++VYR++
Sbjct: 103 WAIHKGKHLEGIDKEDPSTWKTRLRCALNKSADFCEVRERSQLDISNPYKVYRLV 157
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,279,621
Number of extensions: 940929
Number of successful extensions: 5279
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 5119
Number of HSP's successfully gapped: 11
Length of query: 412
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 311
Effective length of database: 8,829,335
Effective search space: 2745923185
Effective search space used: 2745923185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007286
(1237 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 549 e-153
Sscrofa_Chr02 70 3e-09
>Sscrofa_Chr15
|| Length = 157681621
Score = 549 bits (277), Expect = e-153
Identities = 312/321 (97%), Gaps = 2/321 (0%)
Strand = Plus / Minus
Query: 919 agggccgacctcactggcggaagaggaacattgaaggcaagcagtacctcagcaacatgg 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52136389 agggccgacctcactggcggaagaggaacattgaaggcaagcagtacctcagcaacatgg 52136330
Query: 979 ggacgcggaccgcctacctgctgcccagcatggcaaccttcgtcacttccaacaagcccg 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52136329 ggacgcggaccgcctacctgctgcccagcatggcaaccttcgtcacttccaacaagcccg 52136270
Query: 1039 acctccaggtcactgtcaaagaggagagctgtccggtgccttacaacagctcctggcccc 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52136269 acctccaggtcactgtcaaagaggagagctgtccggtgccttacaacagctcctggcccc 52136210
Query: 1099 cgttcccagaact-cccctcacagcccccgggaacccggcgccaagcagcagtcggccgg 1157
|||||||||| || ||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 52136209 cgttcccagacctccccctcacagcccccgggaccccggcgcccagcagcagtcggccgg 52136150
Query: 1158 accgggagaccc-ggccagtgtcatcaagaagacatccgacttcacccaagcccgcgtca 1216
|||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 52136149 accgggagacccgggccagtgtcatcaagaagacatccgacgtcacccaggcccgcgtca 52136090
Query: 1217 agagcggttaagccttggact 1237
||||| |||||||||| ||||
Sbjct: 52136089 agagctgttaagcctttgact 52136069
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 365 aggaaagcatcaaccgggagtagataaacctgatccaaaaacatggaaggcgaattttcg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52180078 aggaaagcatcaaccgggagtagataaacctgatccaaaaacatggaaggcgaattttcg 52180019
Query: 425 atgtgccatgaactccttgcctgacattgaagaagtcaaggataaaagcataaagaaagg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52180018 atgtgccatgaactccttgcctgacattgaagaagtcaaggataaaagcataaagaaagg 52179959
Query: 485 aaacaatgccttcagggtataccggatgctgcccttatctgagcgaccttctaagaaagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52179958 aaacaatgccttcagggtataccggatgctgcccttatctgagcgaccttctaagaaagg 52179899
Score = 345 bits (174), Expect = 4e-92
Identities = 174/174 (100%)
Strand = Plus / Minus
Query: 1 tcctctccttgttttgctttcgatctggactgttctcaggcaagccggggagtaactttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52232968 tcctctccttgttttgctttcgatctggactgttctcaggcaagccggggagtaactttt 52232909
Query: 61 agttttgctcctgcgattattcaactgacgggctttcatttccatttcacacaccctagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52232908 agttttgctcctgcgattattcaactgacgggctttcatttccatttcacacaccctagc 52232849
Query: 121 aacacttaagccttgcggaattgtattggtagcgtgaaaaagcacactgagagg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52232848 aacacttaagccttgcggaattgtattggtagcgtgaaaaagcacactgagagg 52232795
Score = 323 bits (163), Expect = 1e-85
Identities = 166/167 (99%)
Strand = Plus / Minus
Query: 707 agttgtaggacagtcacatctggacagcaccattgaggatcaagagattgtcactaaccc 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52146126 agttgtaggacagtcacatctggacagcaccattgaggatcaagagattgtcactaaccc 52146067
Query: 767 accagacatctgccaagtcgtggaggtgaccaccgagagtgatgagcagccggtcagcat 826
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 52146066 accagacatctgccaagtcgtggaggtgaccaccgagagcgatgagcagccggtcagcat 52146007
Query: 827 gagtgagctctaccccctgcagatctcccccgtgtcttcctacgcag 873
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52146006 gagtgagctctaccccctgcagatctcccccgtgtcttcctacgcag 52145960
Score = 238 bits (120), Expect = 6e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 589 agcaagaaccagttgagtcatctttggggcttagtaatggagtaagtgatctttctcctg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52158883 agcaagaaccagttgagtcatctttggggcttagtaatggagtaagtgatctttctcctg 52158824
Query: 649 agtacgcggtcctgacttcagctataaaaaatgaagtggatagtacggtgaacatcatag 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52158823 agtacgcggtcctgacttcagctataaaaaatgaagtggatagtacggtgaacatcatag 52158764
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 265 aggaaaagaagatttttcagatcccctggatgcatgcagctagacatgggtgggatgtgg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52181208 aggaaaagaagatttttcagatcccctggatgcatgcagctagacatgggtgggatgtgg 52181149
Query: 325 aaaaagatgcaccactctttagaaactgggccatccatacagg 367
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52181148 aaaaagatgcaccactctttagaaactgggccatccatacagg 52181106
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 172 agggcaccatgccggtggaaaggatgcggatgcgcccgtggctggaggaacagatcaact 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52189332 agggcaccatgccggtggaaaggatgcggatgcgcccgtggctggaggaacagatcaact 52189273
Query: 232 caaatacgataccagggctaaagtggcttaacaagg 267
||||||||||||||||||||||||||||||||||||
Sbjct: 52189272 caaatacgataccagggctaaagtggcttaacaagg 52189237
Score = 101 bits (51), Expect = 9e-19
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 871 cagaaagcgaaactaccgatagtgtgcccagtgatgaagagagctcagagg 921
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52137980 cagaaagcgaaactaccgatagtgtgcccagtgatgaagagagctcagagg 52137930
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 542 aggaaagaaaccaaagacagaaaaggaagacagagtgaagcacatcaag 590
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52179584 aggaaagaaaccaaagacagaaaaggaagacagagtgaagcacatcaag 52179536
>Sscrofa_Chr02
|| Length = 162569375
Score = 69.9 bits (35), Expect = 3e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 396 gatccaaaaacatggaaggcgaattttcgatgtgccatgaactccttgcctgacattgaa 455
||||| |||||||||||||| || ||||| ||||||||||||||| |||| || ||||||
Sbjct: 140233446 gatcctaaaacatggaaggccaactttcgctgtgccatgaactccctgccagatattgaa 140233387
Query: 456 gaagtcaagga 466
|| || |||||
Sbjct: 140233386 gaggtgaagga 140233376
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 35,350,159
Number of extensions: 289
Number of successful extensions: 289
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 10
Length of query: 1237
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1216
Effective length of database: 2,808,413,156
Effective search space: 3415030397696
Effective search space used: 3415030397696
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)