Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007289
(1396 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092632.1| C-C motif chemokine 22 [Bos taurus]. 148 1e-35
Alignment gi|NP_001040050.1| C-C motif chemokine 14 [Bos taurus]. 59 1e-08
Alignment gi|NP_787021.1| C-C motif chemokine 5 precursor [Bos taurus]. 57 3e-08
Alignment gi|XP_002695671.1| PREDICTED: chemokine (C-C motif) ligand 3-li... 57 3e-08
Alignment gi|XP_873462.2| PREDICTED: chemokine (C-C motif) ligand 3-like ... 57 3e-08
Alignment gi|NP_776936.1| C-C motif chemokine 3 precursor [Bos taurus]. 56 7e-08
Alignment gi|XP_002695669.1| PREDICTED: macrophage inflammatory protein-1... 56 9e-08
Alignment gi|XP_002695668.1| PREDICTED: macrophage inflammatory protein-1... 56 9e-08
Alignment gi|XP_603768.2| PREDICTED: macrophage inflammatory protein-1 al... 56 9e-08
Alignment gi|XP_002702141.1| PREDICTED: macrophage inflammatory protein-1... 56 9e-08
>ref|NP_001092632.1| C-C motif chemokine 22 [Bos taurus].
Length = 93
Score = 148 bits (373), Expect = 1e-35
Identities = 69/93 (74%), Positives = 77/93 (82%)
Frame = +3
Query: 39 MASLQTPXXXXXXXXXXXXXXTEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 218
MASLQTP TEAGPYGANVEDSVCCRDYIR+PLPLR+VKYYYWTS+SC
Sbjct: 1 MASLQTPLLAALILLAMILQATEAGPYGANVEDSVCCRDYIRYPLPLRLVKYYYWTSNSC 60
Query: 219 RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 317
RRPGVVLLT++DREICADP+ WVKKILQ+L+Q
Sbjct: 61 RRPGVVLLTVKDREICADPKQHWVKKILQKLNQ 93
>ref|NP_001040050.1| C-C motif chemokine 14 [Bos taurus].
Length = 94
Score = 58.9 bits (141), Expect = 1e-08
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +3
Query: 111 GPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWV 290
GPY + CC Y+ P+P + V YY TS C +PG++ +T + ICA+PR WV
Sbjct: 30 GPY----HPAECCLTYVSRPVPRQRVSSYYETSSQCPKPGIIFITKKGHYICANPRDGWV 85
Query: 291 KKILQRLDQ 317
+ ++ L++
Sbjct: 86 QDYIKELEE 94
>ref|NP_787021.1| C-C motif chemokine 5 precursor [Bos taurus].
Length = 91
Score = 57.4 bits (137), Expect = 3e-08
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
A PY ++ + CC YI PLP V+ Y++TS C VV +T + R++CA+P W
Sbjct: 23 ASPYASDT--TPCCFAYISRPLPRTHVQEYFYTSSKCSMAAVVFITRKKRQVCANPEKKW 80
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 81 VREYINALE 89
>ref|XP_002695671.1| PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].
Length = 93
Score = 57.4 bits (137), Expect = 3e-08
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKI 299
GAN + CC ++ +P + V YY TS C +PG++ T R R++CADP WV++
Sbjct: 27 GANTP-TACCFSFVSRQIPRKFVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEY 85
Query: 300 LQRLD 314
+ L+
Sbjct: 86 ITDLE 90
>ref|XP_873462.2| PREDICTED: chemokine (C-C motif) ligand 3-like [Bos taurus].
Length = 93
Score = 57.4 bits (137), Expect = 3e-08
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKI 299
GAN + CC ++ +P + V YY TS C +PG++ T R R++CADP WV++
Sbjct: 27 GANTP-TACCFSFVSRQIPRKFVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEY 85
Query: 300 LQRLD 314
+ L+
Sbjct: 86 ITDLE 90
>ref|NP_776936.1| C-C motif chemokine 3 precursor [Bos taurus].
Length = 93
Score = 56.2 bits (134), Expect = 7e-08
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ P+GA+ + CC Y+ L ++V Y+ TS C +PGV+ T + R++CA+P W
Sbjct: 23 SAPFGADTP-TACCFSYVARQLSRKIVADYFETSSQCSKPGVIFQTKKGRQVCANPTEDW 81
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 82 VQEYITDLE 90
>ref|XP_002695669.1| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2
[Bos taurus].
Length = 93
Score = 55.8 bits (133), Expect = 9e-08
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
CC ++ +P ++V YY TS C +PG++ T R R++CADP WV++ + L+
Sbjct: 34 CCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEYIIDLE 90
>ref|XP_002695668.1| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 1
[Bos taurus].
Length = 124
Score = 55.8 bits (133), Expect = 9e-08
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
CC ++ +P ++V YY TS C +PG++ T R R++CADP WV++ + L+
Sbjct: 65 CCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEYIIDLE 121
>ref|XP_603768.2| PREDICTED: macrophage inflammatory protein-1 alpha-like isoform 2
[Bos taurus].
Length = 93
Score = 55.8 bits (133), Expect = 9e-08
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
CC ++ +P ++V YY TS C +PG++ T R R++CADP WV++ + L+
Sbjct: 34 CCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEYIIDLE 90
>ref|XP_002702141.1| PREDICTED: macrophage inflammatory protein-1 alpha-like [Bos
taurus].
Length = 124
Score = 55.8 bits (133), Expect = 9e-08
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
CC ++ +P ++V YY TS C +PG++ T R R++CADP WV++ + L+
Sbjct: 65 CCFSFVSRQIPRKLVDDYYETSSQCSKPGIIFKTKRGRQVCADPSEDWVQEYIIDLE 121
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,773,756
Number of extensions: 1670744
Number of successful extensions: 5719
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5694
Number of HSP's successfully gapped: 13
Length of query: 465
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,174,046
Effective search space: 5088482514
Effective search space used: 5088482514
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007289
(1396 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537720.1| PREDICTED: similar to Small inducible cytokine ... 61 3e-09
Alignment gi|XP_537721.2| PREDICTED: similar to Small inducible cytokine ... 57 3e-08
Alignment gi|NP_001005256.1| C-C motif chemokine 19 [Canis lupus familiar... 57 4e-08
Alignment gi|NP_001003010.1| C-C motif chemokine 5 precursor [Canis lupus... 57 4e-08
Alignment gi|NP_001005250.1| C-C motif chemokine 4 precursor [Canis lupus... 53 8e-07
>ref|XP_537720.1| PREDICTED: similar to Small inducible cytokine A3-like 1 precursor
(Tonsillar lymphocyte LD78 beta protein)
(LD78-beta(1-70)) (G0/G1 switch regulatory protein 19-2)
(G0S19-2 protein) (PAT 464.2) [Canis familiaris].
Length = 93
Score = 60.8 bits (146), Expect = 3e-09
Identities = 29/71 (40%), Positives = 41/71 (57%)
Frame = +3
Query: 102 TEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRL 281
T + +GA+ S CC YI +P + V YY TS C +PGV+ T R ++ICADP
Sbjct: 21 TCSSTFGADTPTS-CCFSYISRQIPRKFVVDYYETSSQCSKPGVIFQTKRGQQICADPGK 79
Query: 282 PWVKKILQRLD 314
WV+K + L+
Sbjct: 80 AWVQKYITNLE 90
>ref|XP_537721.2| PREDICTED: similar to Small inducible cytokine A4 precursor (CCL4)
(Macrophage inflammatory protein 1-beta) (MIP-1-beta)
[Canis familiaris].
Length = 94
Score = 57.4 bits (137), Expect = 3e-08
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +3
Query: 138 SVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
S CC +I + LR V+ Y T D C PG++ LT + R+ICA+P + WV++ ++ LD
Sbjct: 32 SPCCLTFISRRVSLRFVEGYQRTGDHCLTPGIIFLTHKGRQICANPNVAWVQEYIRHLD 90
>ref|NP_001005256.1| C-C motif chemokine 19 [Canis lupus familiaris].
Length = 100
Score = 57.0 bits (136), Expect = 4e-08
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVK--YYYWTSDSCRRPGVVLLTLRDREICADPRLPWVK 293
GAN + CC + P+P +V+ +Y D CR P VV TL+ R++CA P PWV
Sbjct: 24 GANDAED-CCLSVTQRPIPGNIVRAFHYLLIKDGCRLPAVVFTTLKGRQLCAPPDQPWVD 82
Query: 294 KILQRLDQ 317
+I++RL +
Sbjct: 83 RIIRRLQK 90
>ref|NP_001003010.1| C-C motif chemokine 5 precursor [Canis lupus familiaris].
Length = 91
Score = 57.0 bits (136), Expect = 4e-08
Identities = 25/69 (36%), Positives = 41/69 (59%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
A PY ++ + CC YI LP V+ Y++TS C P VV +T + R++CA+P+ W
Sbjct: 23 ASPYASDT--TPCCFAYISGRLPFTHVQEYFYTSSKCSMPAVVFVTRKHRQVCANPQKKW 80
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 81 VREYINSLE 89
>ref|NP_001005250.1| C-C motif chemokine 4 precursor [Canis lupus familiaris].
Length = 92
Score = 52.8 bits (125), Expect = 8e-07
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ P G++ + CC Y +P V Y+ TS C +P VV T R R++CA+P PW
Sbjct: 23 SAPMGSD-PPTACCFSYTLRKIPRNFVADYFETSSLCSQPAVVFQTRRGRQVCANPSEPW 81
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 82 VQEYMDDLE 90
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,197,028
Number of extensions: 1723528
Number of successful extensions: 5779
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5768
Number of HSP's successfully gapped: 5
Length of query: 465
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 359
Effective length of database: 15,340,888
Effective search space: 5507378792
Effective search space used: 5507378792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007289
(1396 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002981.2| C-C motif chemokine 22 precursor [Homo sapiens]. 133 3e-31
Alignment gi|NP_002976.2| C-C motif chemokine 5 precursor [Homo sapiens]. 62 1e-09
Alignment gi|NP_002974.1| C-C motif chemokine 3 precursor [Homo sapiens]. 58 2e-08
Alignment gi|NP_006265.1| C-C motif chemokine 19 precursor [Homo sapiens]. 58 2e-08
Alignment gi|NP_002979.1| C-C motif chemokine 18 precursor [Homo sapiens]. 57 4e-08
Alignment gi|NP_116741.1| C-C motif chemokine 15 precursor [Homo sapiens]. 56 9e-08
Alignment gi|NP_001001437.2| C-C motif chemokine 3-like 1 precursor [Homo... 55 1e-07
Alignment gi|NP_066286.1| C-C motif chemokine 3-like 1 precursor [Homo sa... 55 1e-07
Alignment gi|NP_002978.1| C-C motif chemokine 17 precursor [Homo sapiens]. 53 6e-07
Alignment gi|NP_002975.1| C-C motif chemokine 4 isoform 1 precursor [Homo... 52 1e-06
>ref|NP_002981.2| C-C motif chemokine 22 precursor [Homo sapiens].
Length = 93
Score = 133 bits (335), Expect = 3e-31
Identities = 62/93 (66%), Positives = 70/93 (75%)
Frame = +3
Query: 39 MASLQTPXXXXXXXXXXXXXXTEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 218
M LQT TEAGPYGAN+EDSVCCRDY+R+ LPLRVVK++YWTSDSC
Sbjct: 1 MDRLQTALLVVLVLLAVALQATEAGPYGANMEDSVCCRDYVRYRLPLRVVKHFYWTSDSC 60
Query: 219 RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 317
RPGVVLLT RD+EICADPR+PWVK IL +L Q
Sbjct: 61 PRPGVVLLTFRDKEICADPRVPWVKMILNKLSQ 93
>ref|NP_002976.2| C-C motif chemokine 5 precursor [Homo sapiens].
Length = 91
Score = 62.0 bits (149), Expect = 1e-09
Identities = 26/69 (37%), Positives = 42/69 (60%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
A PY ++ + CC YI PLP +K Y++TS C P VV +T ++R++CA+P W
Sbjct: 23 ASPYSSDT--TPCCFAYIARPLPRAHIKEYFYTSGKCSNPAVVFVTRKNRQVCANPEKKW 80
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 81 VREYINSLE 89
>ref|NP_002974.1| C-C motif chemokine 3 precursor [Homo sapiens].
Length = 92
Score = 58.2 bits (139), Expect = 2e-08
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +3
Query: 138 SVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
+ CC Y +P + Y+ TS C +PGV+ LT R R++CADP WV+K + L+
Sbjct: 31 TACCFSYTSRQIPQNFIADYFETSSQCSKPGVIFLTKRSRQVCADPSEEWVQKYVSDLE 89
>ref|NP_006265.1| C-C motif chemokine 19 precursor [Homo sapiens].
Length = 98
Score = 58.2 bits (139), Expect = 2e-08
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVK--YYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 317
CC + P+P +V+ +Y D CR P VV TLR R++CA P PWV++I+QRL +
Sbjct: 29 CCLSVTQKPIPGYIVRNFHYLLIKDGCRVPAVVFTTLRGRQLCAPPDQPWVERIIQRLQR 88
>ref|NP_002979.1| C-C motif chemokine 18 precursor [Homo sapiens].
Length = 89
Score = 57.0 bits (136), Expect = 4e-08
Identities = 28/64 (43%), Positives = 37/64 (57%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKI 299
G N E +CC Y +P + + Y TS C +PGV+LLT R R+ICADP WV+K
Sbjct: 24 GTNKE--LCCLVYTSWQIPQKFIVDYSETSPQCPKPGVILLTKRGRQICADPNKKWVQKY 81
Query: 300 LQRL 311
+ L
Sbjct: 82 ISDL 85
>ref|NP_116741.1| C-C motif chemokine 15 precursor [Homo sapiens].
Length = 113
Score = 55.8 bits (133), Expect = 9e-08
Identities = 22/56 (39%), Positives = 35/56 (62%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRL 311
CC YI +P ++K Y+ TS C +PGV+ LT + R++CA P P V+ +++L
Sbjct: 53 CCTSYISQSIPCSLMKSYFETSSECSKPGVIFLTKKGRQVCAKPSGPGVQDCMKKL 108
>ref|NP_001001437.2| C-C motif chemokine 3-like 1 precursor [Homo sapiens].
Length = 93
Score = 55.5 bits (132), Expect = 1e-07
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 138 SVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
+ CC Y +P + Y+ TS C +P V+ LT R R++CADP WV+K + L+
Sbjct: 32 TACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLE 90
>ref|NP_066286.1| C-C motif chemokine 3-like 1 precursor [Homo sapiens].
Length = 93
Score = 55.5 bits (132), Expect = 1e-07
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 138 SVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
+ CC Y +P + Y+ TS C +P V+ LT R R++CADP WV+K + L+
Sbjct: 32 TACCFSYTSRQIPQNFIADYFETSSQCSKPSVIFLTKRGRQVCADPSEEWVQKYVSDLE 90
>ref|NP_002978.1| C-C motif chemokine 17 precursor [Homo sapiens].
Length = 94
Score = 53.1 bits (126), Expect = 6e-07
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVK---KILQRLD 314
CC +Y + +PLR +K +Y TS+ C R +V +T++ R IC+DP VK K LQ L+
Sbjct: 33 CCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYLQSLE 92
Query: 315 Q 317
+
Sbjct: 93 R 93
>ref|NP_002975.1| C-C motif chemokine 4 isoform 1 precursor [Homo sapiens].
Length = 92
Score = 52.4 bits (124), Expect = 1e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ P G++ + CC Y LP V YY TS C +P VV T R +++CADP W
Sbjct: 23 SAPMGSD-PPTACCFSYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRSKQVCADPSESW 81
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 82 VQEYVYDLE 90
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,968,043
Number of extensions: 1682032
Number of successful extensions: 5719
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 5703
Number of HSP's successfully gapped: 16
Length of query: 465
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 359
Effective length of database: 14,802,980
Effective search space: 5314269820
Effective search space used: 5314269820
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007289
(1396 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033163.1| C-C motif chemokine 22 precursor [Mus musculus]. 122 5e-28
Alignment gi|NP_038681.2| C-C motif chemokine 5 precursor [Mus musculus]. 57 5e-08
Alignment gi|NP_035467.1| C-C motif chemokine 3 [Mus musculus]. 57 5e-08
Alignment gi|NP_036018.1| C-C motif chemokine 19 precursor [Mus musculus]. 55 2e-07
Alignment gi|XP_001473709.1| PREDICTED: c-C motif chemokine 19-like [Mus ... 55 2e-07
Alignment gi|XP_001474036.1| PREDICTED: c-C motif chemokine 19-like [Mus ... 55 2e-07
Alignment gi|XP_001472218.1| PREDICTED: c-C motif chemokine 19-like [Mus ... 55 2e-07
Alignment gi|NP_038680.1| C-C motif chemokine 4 [Mus musculus]. 54 2e-07
Alignment gi|NP_062523.1| C-C motif chemokine 24 precursor [Mus musculus]. 51 2e-06
Alignment gi|XP_001481290.1| PREDICTED: c-C motif chemokine 19-like [Mus ... 51 2e-06
>ref|NP_033163.1| C-C motif chemokine 22 precursor [Mus musculus].
Length = 92
Score = 122 bits (307), Expect = 5e-28
Identities = 53/91 (58%), Positives = 70/91 (76%)
Frame = +3
Query: 39 MASLQTPXXXXXXXXXXXXXXTEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 218
MA+L+ P ++AGPYGANVEDS+CC+DYIRHPLP R+VK ++WTS SC
Sbjct: 1 MATLRVPLLVALVLLAVAIQTSDAGPYGANVEDSICCQDYIRHPLPSRLVKEFFWTSKSC 60
Query: 219 RRPGVVLLTLRDREICADPRLPWVKKILQRL 311
R+PGVVL+T+++R+ICADPR WVKK+L +L
Sbjct: 61 RKPGVVLITVKNRDICADPRQVWVKKLLHKL 91
>ref|NP_038681.2| C-C motif chemokine 5 precursor [Mus musculus].
Length = 91
Score = 56.6 bits (135), Expect = 5e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
A PYG++ + CC Y+ LP VK Y++TS C VV +T R+R++CA+P W
Sbjct: 23 ASPYGSDT--TPCCFAYLSLALPRAHVKEYFYTSSKCSNLAVVFVTRRNRQVCANPEKKW 80
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 81 VQEYINYLE 89
>ref|NP_035467.1| C-C motif chemokine 3 [Mus musculus].
Length = 92
Score = 56.6 bits (135), Expect = 5e-08
Identities = 27/69 (39%), Positives = 43/69 (62%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ PYGA+ + CC Y R +P + + Y+ TS C +PGV+ LT R+R+ICAD + W
Sbjct: 23 SAPYGADTP-TACCFSYSRK-IPRQFIVDYFETSSLCSQPGVIFLTKRNRQICADSKETW 80
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 81 VQEYITDLE 89
>ref|NP_036018.1| C-C motif chemokine 19 precursor [Mus musculus].
Length = 108
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKY--YYWTSDSCRRPGVVLLTLRDREICADPRLPWVK 293
GAN + CC + P+P +VK Y D CR P VV TLR ++CA P PWV
Sbjct: 26 GANDAED-CCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 84
Query: 294 KILQRL 311
+I++RL
Sbjct: 85 RIIRRL 90
>ref|XP_001473709.1| PREDICTED: c-C motif chemokine 19-like [Mus musculus].
Length = 164
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKY--YYWTSDSCRRPGVVLLTLRDREICADPRLPWVK 293
GAN + CC + P+P +VK Y D CR P VV TLR ++CA P PWV
Sbjct: 82 GANDAED-CCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 140
Query: 294 KILQRL 311
+I++RL
Sbjct: 141 RIIRRL 146
>ref|XP_001474036.1| PREDICTED: c-C motif chemokine 19-like [Mus musculus].
Length = 164
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKY--YYWTSDSCRRPGVVLLTLRDREICADPRLPWVK 293
GAN + CC + P+P +VK Y D CR P VV TLR ++CA P PWV
Sbjct: 82 GANDAED-CCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 140
Query: 294 KILQRL 311
+I++RL
Sbjct: 141 RIIRRL 146
>ref|XP_001472218.1| PREDICTED: c-C motif chemokine 19-like [Mus musculus].
Length = 108
Score = 54.7 bits (130), Expect = 2e-07
Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKY--YYWTSDSCRRPGVVLLTLRDREICADPRLPWVK 293
GAN + CC + P+P +VK Y D CR P VV TLR ++CA P PWV
Sbjct: 26 GANDAED-CCLSVTQRPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 84
Query: 294 KILQRL 311
+I++RL
Sbjct: 85 RIIRRL 90
>ref|NP_038680.1| C-C motif chemokine 4 [Mus musculus].
Length = 92
Score = 54.3 bits (129), Expect = 2e-07
Identities = 28/69 (40%), Positives = 37/69 (53%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ P G++ S CC Y L V YY TS C +P VV LT R R+ICA+P PW
Sbjct: 23 SAPMGSDPPTS-CCFSYTSRQLHRSFVMDYYETSSLCSKPAVVFLTKRGRQICANPSEPW 81
Query: 288 VKKILQRLD 314
V + + L+
Sbjct: 82 VTEYMSDLE 90
>ref|NP_062523.1| C-C motif chemokine 24 precursor [Mus musculus].
Length = 119
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +3
Query: 138 SVCCRDYIRHPLPL-RVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLD 314
S CC +I +P RVV Y C + GV+ +T + +IC DP+L WV++ +Q+LD
Sbjct: 31 SSCCTSFISKKIPENRVVSYQLANGSICPKAGVIFITKKGHKICTDPKLLWVQRHIQKLD 90
>ref|XP_001481290.1| PREDICTED: c-C motif chemokine 19-like [Mus musculus].
Length = 164
Score = 51.2 bits (121), Expect = 2e-06
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = +3
Query: 120 GANVEDSVCCRDYIRHPLPLRVVKY--YYWTSDSCRRPGVVLLTLRDREICADPRLPWVK 293
GAN + CC + P+P +VK Y D CR P VV TLR ++CA P PWV
Sbjct: 82 GANDAED-CCLSVTQCPIPGNIVKAFRYLLNEDGCRVPAVVFTTLRGYQLCAPPDQPWVD 140
Query: 294 KILQRL 311
+I++ L
Sbjct: 141 RIIRSL 146
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,983,772
Number of extensions: 1390564
Number of successful extensions: 4427
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4414
Number of HSP's successfully gapped: 17
Length of query: 465
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 360
Effective length of database: 12,463,779
Effective search space: 4486960440
Effective search space used: 4486960440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007289
(1396 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127019.1| PREDICTED: c-C motif chemokine 22-like [Sus ... 166 4e-41
Alignment gi|XP_003355853.1| PREDICTED: c-C motif chemokine 22-like [Sus ... 166 4e-41
Alignment gi|XP_003355855.1| PREDICTED: c-C motif chemokine 17 [Sus scrof... 61 2e-09
Alignment gi|NP_001163987.1| C-C motif chemokine 19 [Sus scrofa]. 58 1e-08
Alignment gi|NP_001123418.1| C-C motif chemokine 5 [Sus scrofa]. 57 2e-08
Alignment gi|NP_001009579.1| C-C motif chemokine 3-like 1 [Sus scrofa]. 56 4e-08
Alignment gi|XP_003131759.2| PREDICTED: c-C motif chemokine 3-like [Sus s... 52 6e-07
Alignment gi|XP_003131761.2| PREDICTED: c-C motif chemokine 14-like [Sus ... 52 1e-06
Alignment gi|NP_998944.1| C-C motif chemokine 4 precursor [Sus scrofa]. 50 3e-06
>ref|XP_003127019.1| PREDICTED: c-C motif chemokine 22-like [Sus scrofa].
Length = 93
Score = 166 bits (419), Expect = 4e-41
Identities = 79/93 (84%), Positives = 79/93 (84%)
Frame = +3
Query: 39 MASLQTPXXXXXXXXXXXXXXTEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 218
MASLQTP TEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC
Sbjct: 1 MASLQTPLLAALVLLAMILQATEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 60
Query: 219 RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 317
RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ
Sbjct: 61 RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 93
>ref|XP_003355853.1| PREDICTED: c-C motif chemokine 22-like [Sus scrofa].
Length = 93
Score = 166 bits (419), Expect = 4e-41
Identities = 79/93 (84%), Positives = 79/93 (84%)
Frame = +3
Query: 39 MASLQTPXXXXXXXXXXXXXXTEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 218
MASLQTP TEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC
Sbjct: 1 MASLQTPLLAALVLLAMILQATEAGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSC 60
Query: 219 RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 317
RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ
Sbjct: 61 RRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 93
>ref|XP_003355855.1| PREDICTED: c-C motif chemokine 17 [Sus scrofa].
Length = 133
Score = 60.8 bits (146), Expect = 2e-09
Identities = 26/62 (41%), Positives = 40/62 (64%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLDQ*G 323
CC +Y + +PLR + +Y TSD C R +VL+T + R IC+DP+ WVKK ++ L +
Sbjct: 64 CCLEYFKGAIPLRKLVGWYQTSDECTRDAIVLVTFQGRAICSDPKDTWVKKAIRYLKKNM 123
Query: 324 RP 329
+P
Sbjct: 124 KP 125
>ref|NP_001163987.1| C-C motif chemokine 19 [Sus scrofa].
Length = 100
Score = 58.2 bits (139), Expect = 1e-08
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKY--YYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRL 311
CC +HP+P +V+ Y D CR P VV TL+ RE+CA P PWV++I++RL
Sbjct: 31 CCLSVTQHPIPGNLVRAFRYLLIRDGCRLPAVVFTTLKGRELCAPPGQPWVERIIKRL 88
>ref|NP_001123418.1| C-C motif chemokine 5 [Sus scrofa].
Length = 91
Score = 57.0 bits (136), Expect = 2e-08
Identities = 23/69 (33%), Positives = 41/69 (59%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
A PY ++ + CC Y+ PLP ++ Y++TS C VV +T ++R++CA+P W
Sbjct: 23 ASPYASDT--TPCCFSYLSRPLPRAHLQEYFYTSSKCSMAAVVFITRKNRQVCANPEKKW 80
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 81 VREYINSLE 89
>ref|NP_001009579.1| C-C motif chemokine 3-like 1 [Sus scrofa].
Length = 93
Score = 56.2 bits (134), Expect = 4e-08
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ P GA+ + CC Y LP + V Y+ TS C +PGV+ T + RE+CA+P W
Sbjct: 23 SAPLGADTP-TACCFSYTSRQLPRKFVADYFETSSQCSKPGVIFQTKKGREVCANPEDAW 81
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 82 VQEYISDLE 90
>ref|XP_003131759.2| PREDICTED: c-C motif chemokine 3-like [Sus scrofa].
Length = 85
Score = 52.4 bits (124), Expect = 6e-07
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKIL 302
CC Y +P ++V+ YY TS C +PG++ T + R+ICA+P WV++ +
Sbjct: 26 CCLAYTTRRIPRKLVQDYYKTSSYCSKPGIIFQTKKGRQICANPEEAWVQEYI 78
>ref|XP_003131761.2| PREDICTED: c-C motif chemokine 14-like [Sus scrofa].
Length = 99
Score = 51.6 bits (122), Expect = 1e-06
Identities = 19/58 (32%), Positives = 34/58 (58%)
Frame = +3
Query: 144 CCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPWVKKILQRLDQ 317
CC ++ +P + YY TS C +PG++ +T+ R +CA+PR WV+ ++ L +
Sbjct: 41 CCFTHLTRAIPRERISSYYETSSQCPKPGIIFITIIGRFVCANPRDDWVQDYIKELKE 98
>ref|NP_998944.1| C-C motif chemokine 4 precursor [Sus scrofa].
Length = 92
Score = 50.1 bits (118), Expect = 3e-06
Identities = 25/69 (36%), Positives = 37/69 (53%)
Frame = +3
Query: 108 AGPYGANVEDSVCCRDYIRHPLPLRVVKYYYWTSDSCRRPGVVLLTLRDREICADPRLPW 287
+ P G++ S CC Y LP V YY TS C +P VV T + R++CA+P W
Sbjct: 23 SAPMGSDPPTS-CCFTYTVRKLPRNFVTDYYETSSLCSQPAVVFQTKKGRQVCANPSDDW 81
Query: 288 VKKILQRLD 314
V++ + L+
Sbjct: 82 VQEYMDDLE 90
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,026,983
Number of extensions: 1080296
Number of successful extensions: 3794
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3789
Number of HSP's successfully gapped: 9
Length of query: 465
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 363
Effective length of database: 8,804,438
Effective search space: 3196010994
Effective search space used: 3196010994
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007289
(1396 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 2034 0.0
>Sscrofa_Chr06
|| Length = 157765593
Score = 2034 bits (1026), Expect = 0.0
Identities = 1126/1163 (96%), Gaps = 2/1163 (0%)
Strand = Plus / Plus
Query: 236 cctgctaaccttgagggaccgagagatctgtgctgaccccagactgccctgggtgaagaa 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292354 cctgctaaccttgagggaccgagagatctgtgctgaccccagactgccctgggtgaagaa 17292413
Query: 296 gattctccagaggctggaccaatgaggcaggccctgccctgatgaccgtggccttggatc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292414 gattctccagaggctggaccaatgaggcaggccctgccctgatgaccgtggccttggatc 17292473
Query: 356 ctccaggaaggctcacggagccctacctccctgctgttacagctgctccctgacacaagc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292474 ctccaggaaggctcacggagccctacctccctgctgttacagctgctccctgacacaagc 17292533
Query: 416 ctatgccaacaactctcagtgatccctgtggctgtcaccctcagtcaagtctccaactgt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292534 ctatgccaacaactctcagtgatccctgtggctgtcaccctcagtcaagtctccaactgt 17292593
Query: 476 cactcttatctcccctcttacccttccaatccatcctctgtaactnnnnnnnnnnnnnnn 535
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292594 cactcttatctcccctcttacccttccaatccatcctctgtaacccctcctcccccaccc 17292653
Query: 536 nnnaggcagagggtccacaatcctggtcagtcattcccctgcttaaaatccttccaaggc 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292654 cccaggcagagggtccacaatcctggtcagtcattcccctgcttaaaatccttccaaggc 17292713
Query: 596 tccccattgccctaggccaaggtccgagctcctccaggtctgggtctcatccccagccct 655
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 17292714 tccccattgccctaggccaaggtccgatctcctccaggtctgggtctcatccccagccct 17292773
Query: 656 gcctcatttcccttcatgcagctggactccggcttcctgttctccaaacacacgtcacac 715
||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||
Sbjct: 17292774 gcctcatttcccttcatgcagttggactccggcttcctgttctccaaatacacatcacac 17292833
Query: 716 atttttacttcttgctctttttcaggctactcctgacacccagaatgtctccccatcatc 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292834 atttttacttcttgctctttttcaggctactcctgacacccagaatgtctccccatcatc 17292893
Query: 776 tacatacgtctgaccccatcaggcccccagggcatcactcagcctaggcagccagtaatc 835
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17292894 tacatatgtctgaccccatcaggcccccagggcatcactcagcctaggcagccagtaatc 17292953
Query: 836 gagattcactttgtagacttcccttggtcctctgcccacttttaacagccctgatcacag 895
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 17292954 gcgattcactttgtagacttcccttggtcctctgcccacttttaatagccctgatcacag 17293013
Query: 896 ccagaccgggattctcaggcctggggagcttgtcctccagccccattggttggaccaaga 955
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 17293014 ccagaccgggattctcaggcctggggagcttgtcctccagccccattggttgggccaaga 17293073
Query: 956 tccacacctgggatactttgtctcccaccgtccagcacacacagggcctggatcagaatc 1015
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 17293074 tccacacctgggatactttgtctcccaccgtccagcacgcacagggcctggatcagaatc 17293133
Query: 1016 agggctcagtaagaagctgcagactgataaaagtaaagtccctctcccaccttcccaaag 1075
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17293134 agagctcagtaagaagctgcagactgataaaagtaaagtccctctcccaccttcccaaag 17293193
Query: 1076 ccctcacacatcaatgcagactcggggtcatctagagaagagctggcagggtcctcagtt 1135
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 17293194 ccctcacacatcaatacagactcggggtcatctagaggagagctggcagggtcctcagtt 17293253
Query: 1136 ttgcccagatccacctttatttcccgttttacctatgtgtcaggtctctttaaccctctc 1195
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 17293254 ttgcccagatccacctttatttcccattttacctatgtgtcaggtctctttaaccctctc 17293313
Query: 1196 gcttccctccggtttttactgctcctccaacaggcctgacctcttcagaatcccccactt 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17293314 gcttccctccggtttttactgctcctccaacaggcctgacctcttcagaatcccccactt 17293373
Query: 1256 tcccttcctcttt-cccaaatagctgctaactaaattcatgctatggtgtgaatgactac 1314
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17293374 tcccttcctctttccccaaatagctgctaactaaattcatgctatggtgtgaatgactac 17293433
Query: 1315 ccttggctccctggtnatacaag-tctatttatctttgtatatgaaaaggaggcaaatac 1373
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 17293434 ccttggctccctggtattacaagttctatttatctttgtatatgaaaaggaggcaaatac 17293493
Query: 1374 tttaaaggccgcatgaatgactg 1396
|| ||||||||||||||||||||
Sbjct: 17293494 ttaaaaggccgcatgaatgactg 17293516
Score = 252 bits (127), Expect = 4e-64
Identities = 127/127 (100%)
Strand = Plus / Plus
Query: 109 caggcccctacggcgccaacgtggaggacagtgtctgctgccgggactacatccgccacc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17289439 caggcccctacggcgccaacgtggaggacagtgtctgctgccgggactacatccgccacc 17289498
Query: 169 ccctgcccctgcgtgtggtgaagtattactactggacttcagactcctgccggaggcctg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17289499 ccctgcccctgcgtgtggtgaagtattactactggacttcagactcctgccggaggcctg 17289558
Query: 229 gcgtggt 235
|||||||
Sbjct: 17289559 gcgtggt 17289565
Score = 222 bits (112), Expect = 4e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 1 gactgtagacacctggttcagacactcaggacaggaacatggcgagcctgcagaccccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17288016 gactgtagacacctggttcagacactcaggacaggaacatggcgagcctgcagaccccgc 17288075
Query: 61 tcctggctgccctcgtcctccttgctatgatacttcaagcaactgaggcagg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17288076 tcctggctgccctcgtcctccttgctatgatacttcaagcaactgaggcagg 17288127
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,438,336
Number of extensions: 409
Number of successful extensions: 409
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 4
Length of query: 1396
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1375
Effective length of database: 2,808,413,156
Effective search space: 3861568089500
Effective search space used: 3861568089500
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)