Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007291
(1332 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039613.1| 26S proteasome non-ATPase regulatory subunit... 767 0.0
Alignment gi|XP_002691522.1| PREDICTED: COP9 constitutive photomorphogeni... 108 1e-23
Alignment gi|XP_001250692.2| PREDICTED: COP9 constitutive photomorphogeni... 108 1e-23
Alignment gi|NP_001069747.1| COP9 constitutive photomorphogenic homolog s... 106 5e-23
>ref|NP_001039613.1| 26S proteasome non-ATPase regulatory subunit 11 [Bos taurus].
Length = 422
Score = 767 bits (1980), Expect = 0.0
Identities = 402/419 (95%), Positives = 404/419 (96%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 412
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 413 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 592
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 593 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 772
SNLPK IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 240
Query: 773 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 952
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
Sbjct: 241 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 300
Query: 953 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 1132
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
Sbjct: 301 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 360
Query: 1133 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 361 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAK 419
>ref|XP_002691522.1| PREDICTED: COP9 constitutive photomorphogenic homolog subunit 2-like
[Bos taurus].
Length = 450
Score = 108 bits (270), Expect = 1e-23
Identities = 100/387 (25%), Positives = 172/387 (44%), Gaps = 10/387 (2%)
Frame = +2
Query: 62 AAVVEFQRAQSLLSTDREASIDILHSIVKRDIQ-ENDEEAVQVKEQSILELGSLLAKTGQ 238
AA+ FQ+ L E L ++K + + N E + +Q + + S + +
Sbjct: 49 AALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYS 108
Query: 239 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 418
+ +L Y+ S SK + L + +DL + T LE ++ AK+++
Sbjct: 109 EKSINSILDYI-----STSKQNSDFLCQ--MDLLQEFYETT-------LEALKDAKNDRL 154
Query: 419 TFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKT 580
F +L LY + + Y + + QL + + D + L+E+ LE +
Sbjct: 155 WF---KTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 211
Query: 581 YHALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAF 760
Y A N K I P + + G +H E +++ A++ F+EAF
Sbjct: 212 YTAQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAF 269
Query: 761 EGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQA 931
+ YD SP+ T LKY++L +++ + P D Q K + A+ + A
Sbjct: 270 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSA 324
Query: 932 SKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSL 1111
+N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS
Sbjct: 325 YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKE 384
Query: 1112 IKLSKADVERKLSQMILDKKFHGILDQ 1192
+ + ADVE L Q ILD HG +DQ
Sbjct: 385 LNIDVADVESLLVQCILDNTIHGRIDQ 411
>ref|XP_001250692.2| PREDICTED: COP9 constitutive photomorphogenic homolog subunit 2 [Bos
taurus].
Length = 450
Score = 108 bits (270), Expect = 1e-23
Identities = 100/387 (25%), Positives = 172/387 (44%), Gaps = 10/387 (2%)
Frame = +2
Query: 62 AAVVEFQRAQSLLSTDREASIDILHSIVKRDIQ-ENDEEAVQVKEQSILELGSLLAKTGQ 238
AA+ FQ+ L E L ++K + + N E + +Q + + S + +
Sbjct: 49 AALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYS 108
Query: 239 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 418
+ +L Y+ S SK + L + +DL + T LE ++ AK+++
Sbjct: 109 EKSINSILDYI-----STSKQNSDFLCQ--MDLLQEFYETT-------LEALKDAKNDRL 154
Query: 419 TFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKT 580
F +L LY + + Y + + QL + + D + L+E+ LE +
Sbjct: 155 WF---KTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 211
Query: 581 YHALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAF 760
Y A N K I P + + G +H E +++ A++ F+EAF
Sbjct: 212 YTAQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAF 269
Query: 761 EGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQA 931
+ YD SP+ T LKY++L +++ + P D Q K + A+ + A
Sbjct: 270 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSA 324
Query: 932 SKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSL 1111
+N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS
Sbjct: 325 YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKE 384
Query: 1112 IKLSKADVERKLSQMILDKKFHGILDQ 1192
+ + ADVE L Q ILD HG +DQ
Sbjct: 385 LNIDVADVESLLVQCILDNTIHGRIDQ 411
>ref|NP_001069747.1| COP9 constitutive photomorphogenic homolog subunit 2 [Bos taurus].
Length = 450
Score = 106 bits (264), Expect = 5e-23
Identities = 99/387 (25%), Positives = 171/387 (44%), Gaps = 10/387 (2%)
Frame = +2
Query: 62 AAVVEFQRAQSLLSTDREASIDILHSIVKRDIQ-ENDEEAVQVKEQSILELGSLLAKTGQ 238
AA+ FQ+ L E L ++K + + N E + +Q + + S + +
Sbjct: 49 AALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYS 108
Query: 239 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 418
+ +L Y+ S SK + L + +DL + T LE ++ AK+++
Sbjct: 109 EKSINSILDYI-----STSKQNSDFLCQ--MDLLQEFYETT-------LEALKDAKNDRL 154
Query: 419 TFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKT 580
F +L LY + + Y + + QL + + D + L+E+ LE +
Sbjct: 155 WF---KTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 211
Query: 581 YHALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAF 760
Y A N K I P + + G +H E +++ A++ F+EAF
Sbjct: 212 YTAQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAF 269
Query: 761 EGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQA 931
+ YD SP+ T LKY++L +++ + P D Q K + A+ + A
Sbjct: 270 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSA 324
Query: 932 SKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSL 1111
+N + +FEK + + DDP I H+ +L N+ Q LI++I+P++R+ I IS
Sbjct: 325 YQNNDITEFEKIQKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKE 384
Query: 1112 IKLSKADVERKLSQMILDKKFHGILDQ 1192
+ + ADVE L Q ILD HG +DQ
Sbjct: 385 LNIDVADVESLLVQCILDNTIHGRIDQ 411
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,579,540
Number of extensions: 1387638
Number of successful extensions: 4402
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4393
Number of HSP's successfully gapped: 4
Length of query: 444
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 339
Effective length of database: 14,207,134
Effective search space: 4816218426
Effective search space used: 4816218426
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007291
(1332 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867938.1| PREDICTED: similar to 26S proteasome non-ATPase... 767 0.0
Alignment gi|XP_537730.2| PREDICTED: similar to 26S proteasome non-ATPase... 767 0.0
Alignment gi|XP_867942.1| PREDICTED: similar to 26S proteasome non-ATPase... 746 0.0
Alignment gi|XP_867949.1| PREDICTED: similar to 26S proteasome non-ATPase... 745 0.0
Alignment gi|XP_850675.1| PREDICTED: similar to COP9 (constitutive photom... 108 1e-23
Alignment gi|XP_862009.1| PREDICTED: similar to COP9 (constitutive photom... 107 2e-23
Alignment gi|XP_535470.1| PREDICTED: similar to COP9 (constitutive photom... 107 2e-23
Alignment gi|XP_861951.1| PREDICTED: similar to COP9 (constitutive photom... 104 2e-22
Alignment gi|XP_861981.1| PREDICTED: similar to COP9 (constitutive photom... 96 8e-20
>ref|XP_867938.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 11
(26S proteasome regulatory subunit S9) (26S proteasome
regulatory subunit p44.5) isoform 2 [Canis familiaris].
Length = 422
Score = 767 bits (1980), Expect = 0.0
Identities = 402/419 (95%), Positives = 404/419 (96%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 412
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 413 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 592
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 593 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 772
SNLPK IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 240
Query: 773 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 952
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
Sbjct: 241 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 300
Query: 953 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 1132
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
Sbjct: 301 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 360
Query: 1133 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 361 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAK 419
>ref|XP_537730.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 11
(26S proteasome regulatory subunit S9) (26S proteasome
regulatory subunit p44.5) isoform 1 [Canis familiaris].
Length = 422
Score = 767 bits (1980), Expect = 0.0
Identities = 402/419 (95%), Positives = 404/419 (96%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 412
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 413 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 592
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 593 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 772
SNLPK IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 240
Query: 773 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 952
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
Sbjct: 241 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 300
Query: 953 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 1132
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
Sbjct: 301 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 360
Query: 1133 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 361 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAK 419
>ref|XP_867942.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 11
(26S proteasome regulatory subunit S9) (26S proteasome
regulatory subunit p44.5) isoform 3 [Canis familiaris].
Length = 464
Score = 746 bits (1927), Expect = 0.0
Identities = 402/461 (87%), Positives = 404/461 (87%), Gaps = 42/461 (9%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQE-------------- 370
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEFLFVTGHLILWVCS 120
Query: 371 ----------------------------VELCLECIEWAKSEKRTFLRQALEARLVSLYF 466
VELCLECIEWAKSEKRTFLRQALEARLVSLYF
Sbjct: 121 MLCFVSGDCQWSLESSLHQGHKLILVFEVELCLECIEWAKSEKRTFLRQALEARLVSLYF 180
Query: 467 DTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKXXXXXXXXXXXXX 646
DTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPK
Sbjct: 181 DTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTAN 240
Query: 647 XIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCK 826
IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCK
Sbjct: 241 AIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCK 300
Query: 827 IMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPI 1006
IMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPI
Sbjct: 301 IMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPI 360
Query: 1007 ISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGIL 1186
ISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGIL
Sbjct: 361 ISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGIL 420
Query: 1187 DQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
DQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 421 DQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAK 461
>ref|XP_867949.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 11
(26S proteasome regulatory subunit S9) (26S proteasome
regulatory subunit p44.5) isoform 4 [Canis familiaris].
Length = 422
Score = 745 bits (1923), Expect = 0.0
Identities = 391/419 (93%), Positives = 396/419 (94%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 412
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 413 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 592
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 593 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 772
SNLPK IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 240
Query: 773 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 952
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
Sbjct: 241 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 300
Query: 953 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 1132
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQ+ + + L AD
Sbjct: 301 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQVRTLLGTLILWLAD 360
Query: 1133 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 361 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAK 419
>ref|XP_850675.1| PREDICTED: similar to COP9 (constitutive photomorphogenic) homolog,
subunit 2 isoform 3 [Canis familiaris].
Length = 450
Score = 108 bits (270), Expect = 1e-23
Identities = 100/387 (25%), Positives = 172/387 (44%), Gaps = 10/387 (2%)
Frame = +2
Query: 62 AAVVEFQRAQSLLSTDREASIDILHSIVKRDIQ-ENDEEAVQVKEQSILELGSLLAKTGQ 238
AA+ FQ+ L E L ++K + + N E + +Q + + S + +
Sbjct: 49 AALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYS 108
Query: 239 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 418
+ +L Y+ S SK + L + +DL + T LE ++ AK+++
Sbjct: 109 EKSINSILDYI-----STSKQNSDFLCQ--MDLLQEFYETT-------LEALKDAKNDRL 154
Query: 419 TFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKT 580
F +L LY + + Y + + QL + + D + L+E+ LE +
Sbjct: 155 WF---KTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 211
Query: 581 YHALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAF 760
Y A N K I P + + G +H E +++ A++ F+EAF
Sbjct: 212 YTAQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAF 269
Query: 761 EGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQA 931
+ YD SP+ T LKY++L +++ + P D Q K + A+ + A
Sbjct: 270 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSA 324
Query: 932 SKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSL 1111
+N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS
Sbjct: 325 YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKE 384
Query: 1112 IKLSKADVERKLSQMILDKKFHGILDQ 1192
+ + ADVE L Q ILD HG +DQ
Sbjct: 385 LNIDVADVESLLVQCILDNTIHGRIDQ 411
>ref|XP_862009.1| PREDICTED: similar to COP9 (constitutive photomorphogenic) homolog,
subunit 2 isoform 6 [Canis familiaris].
Length = 444
Score = 107 bits (268), Expect = 2e-23
Identities = 90/325 (27%), Positives = 150/325 (46%), Gaps = 13/325 (4%)
Frame = +2
Query: 257 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLE----CIEWAKSEKRTF 424
LL Y+R +++++ + + + S+LD +T ++++L E +E K K
Sbjct: 95 LLTYIR---SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLEALKDAKNDR 146
Query: 425 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYH 586
L +L LY + + Y + + QL + + D + L+E+ LE + Y
Sbjct: 147 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 206
Query: 587 ALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 766
A N K I P + + G +H E +++ A++ F+EAF+
Sbjct: 207 AQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 264
Query: 767 YDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASK 937
YD SP+ T LKY++L +++ + P D Q K T KC Q
Sbjct: 265 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILA-MTNLKKCAYQ--- 320
Query: 938 NRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIK 1117
N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS +
Sbjct: 321 NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN 380
Query: 1118 LSKADVERKLSQMILDKKFHGILDQ 1192
+ ADVE L Q ILD HG +DQ
Sbjct: 381 IDVADVESLLVQCILDNTIHGRIDQ 405
>ref|XP_535470.1| PREDICTED: similar to COP9 (constitutive photomorphogenic) homolog,
subunit 2 isoform 1 [Canis familiaris].
Length = 443
Score = 107 bits (268), Expect = 2e-23
Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 13/325 (4%)
Frame = +2
Query: 257 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLE----CIEWAKSEKRTF 424
LL Y+R +++++ + + + S+LD +T ++++L E +E K K
Sbjct: 95 LLTYIR---SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLEALKDAKNDR 146
Query: 425 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYH 586
L +L LY + + Y + + QL + + D + L+E+ LE + Y
Sbjct: 147 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 206
Query: 587 ALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 766
A N K I P + + G +H E +++ A++ F+EAF+
Sbjct: 207 AQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 264
Query: 767 YDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASK 937
YD SP+ T LKY++L +++ + P D Q K + A+ + A +
Sbjct: 265 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSAYQ 319
Query: 938 NRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIK 1117
N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS +
Sbjct: 320 NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN 379
Query: 1118 LSKADVERKLSQMILDKKFHGILDQ 1192
+ ADVE L Q ILD HG +DQ
Sbjct: 380 IDVADVESLLVQCILDNTIHGRIDQ 404
>ref|XP_861951.1| PREDICTED: similar to COP9 (constitutive photomorphogenic) homolog,
subunit 2 isoform 4 [Canis familiaris].
Length = 401
Score = 104 bits (260), Expect = 2e-22
Identities = 97/373 (26%), Positives = 168/373 (45%), Gaps = 10/373 (2%)
Frame = +2
Query: 104 TDREASIDILHSIVK-RDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPF 280
++ E ++D+ + + ++E+D +A Q +LEL G+ E G K ++
Sbjct: 24 SNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLEL------EGEKGEWG--FKALKQM 75
Query: 281 LNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSL 460
+ K L+DL + T LE ++ AK+++ F +L L
Sbjct: 76 IKINFK---------LMDLLQEFYETT-------LEALKDAKNDRLWF---KTNTKLGKL 116
Query: 461 YFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYHALSNLPKXXXXX 622
Y + + Y + + QL + + D + L+E+ LE + Y A N K
Sbjct: 117 YLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALY 176
Query: 623 XXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITS 802
I P + + G +H E +++ A++ F+EAF+ YD SP+ T
Sbjct: 177 EQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKNYDESGSPRRTTC 234
Query: 803 LKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALT 973
LKY++L +++ + P D Q K + A+ + A +N + +FEK L
Sbjct: 235 LKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSAYQNNDITEFEKILK 289
Query: 974 DYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQ 1153
+ + DDP I H+ +L N+ Q LI++I+P++R+ I IS + + ADVE L Q
Sbjct: 290 TNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQ 349
Query: 1154 MILDKKFHGILDQ 1192
ILD HG +DQ
Sbjct: 350 CILDNTIHGRIDQ 362
>ref|XP_861981.1| PREDICTED: similar to COP9 (constitutive photomorphogenic) homolog,
subunit 2 isoform 5 [Canis familiaris].
Length = 402
Score = 95.9 bits (237), Expect = 8e-20
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Frame = +2
Query: 716 EKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALR 886
E +++ A++ F+EAF+ YD SP+ T LKY++L +++ + P D Q K
Sbjct: 207 EGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK---- 262
Query: 887 YAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRV 1066
+ A+ + A +N + +FEK L + + DDP I H+ +L N+ Q LI++
Sbjct: 263 -NDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKL 321
Query: 1067 IEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQ 1192
I+P++R+ I IS + + ADVE L Q ILD HG +DQ
Sbjct: 322 IKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQ 363
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,868,156
Number of extensions: 1433681
Number of successful extensions: 4462
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4455
Number of HSP's successfully gapped: 10
Length of query: 444
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 338
Effective length of database: 15,340,888
Effective search space: 5185220144
Effective search space used: 5185220144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007291
(1332 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002806.2| 26S proteasome non-ATPase regulatory subunit 11... 767 0.0
Alignment gi|NP_001137359.1| COP9 signalosome complex subunit 2 isoform 2... 108 1e-23
Alignment gi|NP_004227.1| COP9 signalosome complex subunit 2 isoform 1 [H... 107 2e-23
>ref|NP_002806.2| 26S proteasome non-ATPase regulatory subunit 11 [Homo sapiens].
Length = 422
Score = 767 bits (1980), Expect = 0.0
Identities = 402/419 (95%), Positives = 404/419 (96%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 412
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 413 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 592
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 593 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 772
SNLPK IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 240
Query: 773 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 952
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
Sbjct: 241 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 300
Query: 953 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 1132
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
Sbjct: 301 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 360
Query: 1133 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 361 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAK 419
>ref|NP_001137359.1| COP9 signalosome complex subunit 2 isoform 2 [Homo sapiens].
Length = 450
Score = 108 bits (270), Expect = 1e-23
Identities = 100/387 (25%), Positives = 172/387 (44%), Gaps = 10/387 (2%)
Frame = +2
Query: 62 AAVVEFQRAQSLLSTDREASIDILHSIVKRDIQ-ENDEEAVQVKEQSILELGSLLAKTGQ 238
AA+ FQ+ L E L ++K + + N E + +Q + + S + +
Sbjct: 49 AALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYS 108
Query: 239 AAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKR 418
+ +L Y+ S SK + L + +DL + T LE ++ AK+++
Sbjct: 109 EKSINSILDYI-----STSKQNSDFLCQ--MDLLQEFYETT-------LEALKDAKNDRL 154
Query: 419 TFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKT 580
F +L LY + + Y + + QL + + D + L+E+ LE +
Sbjct: 155 WF---KTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQM 211
Query: 581 YHALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAF 760
Y A N K I P + + G +H E +++ A++ F+EAF
Sbjct: 212 YTAQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAF 269
Query: 761 EGYDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQA 931
+ YD SP+ T LKY++L +++ + P D Q K + A+ + A
Sbjct: 270 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSA 324
Query: 932 SKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSL 1111
+N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS
Sbjct: 325 YQNNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKE 384
Query: 1112 IKLSKADVERKLSQMILDKKFHGILDQ 1192
+ + ADVE L Q ILD HG +DQ
Sbjct: 385 LNIDVADVESLLVQCILDNTIHGRIDQ 411
>ref|NP_004227.1| COP9 signalosome complex subunit 2 isoform 1 [Homo sapiens].
Length = 443
Score = 107 bits (268), Expect = 2e-23
Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 13/325 (4%)
Frame = +2
Query: 257 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLE----CIEWAKSEKRTF 424
LL Y+R +++++ + + + S+LD +T ++++L E +E K K
Sbjct: 95 LLTYIR---SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLEALKDAKNDR 146
Query: 425 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYH 586
L +L LY + + Y + + QL + + D + L+E+ LE + Y
Sbjct: 147 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 206
Query: 587 ALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 766
A N K I P + + G +H E +++ A++ F+EAF+
Sbjct: 207 AQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 264
Query: 767 YDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASK 937
YD SP+ T LKY++L +++ + P D Q K + A+ + A +
Sbjct: 265 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSAYQ 319
Query: 938 NRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIK 1117
N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS +
Sbjct: 320 NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN 379
Query: 1118 LSKADVERKLSQMILDKKFHGILDQ 1192
+ ADVE L Q ILD HG +DQ
Sbjct: 380 IDVADVESLLVQCILDNTIHGRIDQ 404
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,945,382
Number of extensions: 1413608
Number of successful extensions: 4459
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4452
Number of HSP's successfully gapped: 3
Length of query: 444
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 338
Effective length of database: 14,802,980
Effective search space: 5003407240
Effective search space used: 5003407240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007291
(1332 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848731.2| 26S proteasome non-ATPase regulatory subunit 11... 766 0.0
Alignment gi|NP_034069.2| COP9 signalosome complex subunit 2 [Mus musculu... 107 2e-23
>ref|NP_848731.2| 26S proteasome non-ATPase regulatory subunit 11 [Mus musculus].
Length = 422
Score = 766 bits (1978), Expect = 0.0
Identities = 402/419 (95%), Positives = 403/419 (96%)
Frame = +2
Query: 53 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 232
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
Sbjct: 1 MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT 60
Query: 233 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 412
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
Sbjct: 61 GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE 120
Query: 413 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 592
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
Sbjct: 121 KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL 180
Query: 593 SNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 772
SNLPK IYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD 240
Query: 773 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 952
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
Sbjct: 241 SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA 300
Query: 953 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 1132
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
Sbjct: 301 DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD 360
Query: 1133 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSL KA+
Sbjct: 361 VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAK 419
>ref|NP_034069.2| COP9 signalosome complex subunit 2 [Mus musculus].
Length = 443
Score = 107 bits (268), Expect = 2e-23
Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 13/325 (4%)
Frame = +2
Query: 257 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLE----CIEWAKSEKRTF 424
LL Y+R +++++ + + + S+LD +T ++++L E +E K K
Sbjct: 95 LLTYIR---SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLEALKDAKNDR 146
Query: 425 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYH 586
L +L LY + + Y + + QL + + D + L+E+ LE + Y
Sbjct: 147 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 206
Query: 587 ALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 766
A N K I P + + G +H E +++ A++ F+EAF+
Sbjct: 207 AQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 264
Query: 767 YDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASK 937
YD SP+ T LKY++L +++ + P D Q K + A+ + A +
Sbjct: 265 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSAYQ 319
Query: 938 NRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIK 1117
N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS +
Sbjct: 320 NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN 379
Query: 1118 LSKADVERKLSQMILDKKFHGILDQ 1192
+ ADVE L Q ILD HG +DQ
Sbjct: 380 IDVADVESLLVQCILDNTIHGRIDQ 404
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,219,715
Number of extensions: 1194778
Number of successful extensions: 3670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3662
Number of HSP's successfully gapped: 2
Length of query: 444
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 340
Effective length of database: 12,493,815
Effective search space: 4247897100
Effective search space used: 4247897100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007291
(1332 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131789.2| PREDICTED: 26S proteasome non-ATPase regulat... 714 0.0
Alignment gi|NP_001098771.1| COP9 signalosome complex subunit 2 [Sus scro... 107 1e-23
>ref|XP_003131789.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 11-like [Sus
scrofa].
Length = 506
Score = 714 bits (1842), Expect = 0.0
Identities = 372/389 (95%), Positives = 374/389 (96%)
Frame = +2
Query: 143 VKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVR 322
VKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVR
Sbjct: 115 VKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVR 174
Query: 323 SLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLG 502
SLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLG
Sbjct: 175 SLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLG 234
Query: 503 SQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKXXXXXXXXXXXXXXIYCPPKLQATL 682
SQLLRELKKMDDKALLVEVQLLESKTYHALSNLPK IYCPPKLQATL
Sbjct: 235 SQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATL 294
Query: 683 DMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQAL 862
DMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQAL
Sbjct: 295 DMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQAL 354
Query: 863 VSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNL 1042
VSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNL
Sbjct: 355 VSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNL 414
Query: 1043 LEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDE 1222
LEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDE
Sbjct: 415 LEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDE 474
Query: 1223 PPVDKTYEAALETIQNMSKVVDSLXHKAR 1309
PPVDKTYEAALETIQNMSKVVDSL +KA+
Sbjct: 475 PPVDKTYEAALETIQNMSKVVDSLYNKAK 503
Score = 202 bits (513), Expect = 4e-52
Identities = 103/103 (100%), Positives = 103/103 (100%)
Frame = +2
Query: 965 ALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERK 1144
ALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERK
Sbjct: 4 ALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERK 63
Query: 1145 LSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNM 1273
LSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNM
Sbjct: 64 LSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNM 106
>ref|NP_001098771.1| COP9 signalosome complex subunit 2 [Sus scrofa].
Length = 443
Score = 107 bits (268), Expect = 1e-23
Identities = 88/325 (27%), Positives = 152/325 (46%), Gaps = 13/325 (4%)
Frame = +2
Query: 257 LLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLE----CIEWAKSEKRTF 424
LL Y+R +++++ + + + S+LD +T ++++L E +E K K
Sbjct: 95 LLTYIR---SAVTRNYSEKSINSILDYI-----STSKQMDLLQEFYETTLEALKDAKNDR 146
Query: 425 LRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDK------ALLVEVQLLESKTYH 586
L +L LY + + Y + + QL + + D + L+E+ LE + Y
Sbjct: 147 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 206
Query: 587 ALSNLPKXXXXXXXXXXXXXXIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEG 766
A N K I P + + G +H E +++ A++ F+EAF+
Sbjct: 207 AQKNNKKLKALYEQSLHIKSAIP-HPLIMGVIRECGGKMHL-REGEFEKAHTDFFEAFKN 264
Query: 767 YDSIDSPKAITSLKYMLLCKIMLNT---PEDVQALVSGKLALRYAGRQTEALKCVAQASK 937
YD SP+ T LKY++L +++ + P D Q K + A+ + A +
Sbjct: 265 YDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYK-----NDPEILAMTNLVSAYQ 319
Query: 938 NRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIK 1117
N + +FEK L + + DDP I H+ +L N+ Q LI++I+P++R+ I IS +
Sbjct: 320 NNDITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELN 379
Query: 1118 LSKADVERKLSQMILDKKFHGILDQ 1192
+ ADVE L Q ILD HG +DQ
Sbjct: 380 IDVADVESLLVQCILDNTIHGRIDQ 404
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,538,354
Number of extensions: 889424
Number of successful extensions: 2653
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2651
Number of HSP's successfully gapped: 3
Length of query: 444
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 342
Effective length of database: 8,804,438
Effective search space: 3011117796
Effective search space used: 3011117796
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007291
(1332 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 387 e-104
>Sscrofa_Chr12
|| Length = 63588571
Score = 387 bits (195), Expect = e-104
Identities = 198/199 (99%)
Strand = Plus / Minus
Query: 500 ggttctcagttgctgcgggagttgaaaaagatggatgacaaagcccttttggtggaagta 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44272613 ggttctcagttgctgcgggagttgaaaaagatggatgacaaagcccttttggtggaagta 44272554
Query: 560 cagcttttagaaagcaaaacataccatgccctgagtaacctgccaaaagcccgagctgcc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44272553 cagcttttagaaagcaaaacataccatgccctgagtaacctgccaaaagcccgagctgcc 44272494
Query: 620 ttaacctctgctcgaaccacagcaaatgccatttactgcccccctaagttgcaggccact 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44272493 ttaacctctgctcgaaccacagcaaatgccatttactgcccccctaagttgcaggccacg 44272434
Query: 680 ttggatatgcagtcaggta 698
|||||||||||||||||||
Sbjct: 44272433 ttggatatgcagtcaggta 44272415
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 693 caggtattatccatgcagcagaggagaaggattggaaaactgcatactcatatttctatg 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44267734 caggtattatccatgcagcagaggagaaggattggaaaactgcatactcatatttctatg 44267675
Query: 753 aggcatttgagggttatgactccatcgatagccccaaggccatcacgtctctgaagtaca 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44267674 aggcatttgagggttatgactccatcgatagccccaaggccatcacgtctctgaagtaca 44267615
Query: 813 tgttgctgtgcaaaatcatgctcaacac 840
||||||||||||||||||||||||||||
Sbjct: 44267614 tgttgctgtgcaaaatcatgctcaacac 44267587
Score = 258 bits (130), Expect = 7e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 243 cagagcttggaggactcctgaagtatgtacgacccttcttgaattccatcagcaaggcta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44281980 cagagcttggaggactcctgaagtatgtacgacccttcttgaattccatcagcaaggcta 44281921
Query: 303 aagcagctcgtctggtccgatctcttcttgatctgtttcttgatatggaagcagctacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44281920 aagcagctcgtctggtccgatctcttcttgatctgtttcttgatatggaagcagctacag 44281861
Query: 363 ggcaggaggt 372
||||||||||
Sbjct: 44281860 ggcaggaggt 44281851
Score = 256 bits (129), Expect = 3e-65
Identities = 141/144 (97%), Gaps = 1/144 (0%)
Strand = Plus / Minus
Query: 1178 gggatcttggaccagggggagggcgtcttgattattttcgatgaacccccagtagataaa 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44259858 gggatcttggaccagggggagggcgtcttgattattttcgatgaacccccagtagataaa 44259799
Query: 1238 acgtacgaagctgcactggaaacaattcagaacatgagtaaagtagtggattccctctan 1297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44259798 acgtacgaagctgcactggaaacaattcagaacatgagtaaagtagtggattccctctac 44259739
Query: 1298 cacaaag-caagaaactgacatag 1320
|||||| ||||||||||||||||
Sbjct: 44259738 aacaaagccaagaaactgacatag 44259715
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 963 aggccctgacggattaccgggcagagctccgggatgacccaatcatcagcacgcacttgg 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44261117 aggccctgacggattaccgggcagagctccgggatgacccaatcatcagcacgcacttgg 44261058
Query: 1023 ccaagttgtatgacaacttactggaacagaatctcatccgagtcattgagcctttttccc 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44261057 ccaagttgtatgacaacttactggaacagaatctcatccgagtcattgagcctttttccc 44260998
Query: 1083 gagtacag 1090
||||||||
Sbjct: 44260997 gagtacag 44260990
Score = 254 bits (128), Expect = 1e-64
Identities = 128/128 (100%)
Strand = Plus / Minus
Query: 963 aggccctgacggattaccgggcagagctccgggatgacccaatcatcagcacgcacttgg 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44262334 aggccctgacggattaccgggcagagctccgggatgacccaatcatcagcacgcacttgg 44262275
Query: 1023 ccaagttgtatgacaacttactggaacagaatctcatccgagtcattgagcctttttccc 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44262274 ccaagttgtatgacaacttactggaacagaatctcatccgagtcattgagcctttttccc 44262215
Query: 1083 gagtacag 1090
||||||||
Sbjct: 44262214 gagtacag 44262207
Score = 204 bits (103), Expect = 9e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 143 gtgaagcgtgacattcaggagaatgatgaggaggcagtacaggtcaaagagcagagcatt 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44287870 gtgaagcgtgacattcaggagaatgatgaggaggcagtacaggtcaaagagcagagcatt 44287811
Query: 203 ctggaactggggtctctcctggcgaagactggacaagctgcag 245
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44287810 ctggaactggggtctctcctggcgaagactggacaagctgcag 44287768
Score = 149 bits (75), Expect = 5e-33
Identities = 75/75 (100%)
Strand = Plus / Minus
Query: 369 aggtcgaattgtgtttagagtgcatcgaatgggccaaatcagaaaaaagaactttcttac 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44275161 aggtcgaattgtgtttagagtgcatcgaatgggccaaatcagaaaaaagaactttcttac 44275102
Query: 429 gccaggctttggagg 443
|||||||||||||||
Sbjct: 44275101 gccaggctttggagg 44275087
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 900 agacagaagcattaaaatgtgtggctcaggccagcaagaacagatcactggcagattttg 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44264422 agacagaagcattaaaatgtgtggctcaggccagcaagaacagatcactggcagattttg 44264363
Query: 960 aaaagg 965
||||||
Sbjct: 44264362 aaaagg 44264357
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 441 aggcaagactggtgtctttgtactttgataccaagaggtaccaggaagcattgcatttgg 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44274689 aggcaagactggtgtctttgtactttgataccaagaggtaccaggaagcattgcatttgg 44274630
Query: 501 gt 502
||
Sbjct: 44274629 gt 44274628
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Minus
Query: 841 cccagaagatgtccaggctttggtgagcgggaagcttgcacttcggtatgcggggaggca 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44266524 cccagaagatgtccaggctttggtgagcgggaagcttgcacttcggtatgcggggaggca 44266465
Query: 901 g 901
|
Sbjct: 44266464 g 44266464
Score = 109 bits (55), Expect = 4e-21
Identities = 55/55 (100%)
Strand = Plus / Minus
Query: 1125 aggccgatgtggaaaggaaattatcacagatgattcttgacaagaaatttcatgg 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44260212 aggccgatgtggaaaggaaattatcacagatgattcttgacaagaaatttcatgg 44260158
Score = 79.8 bits (40), Expect = 4e-12
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 1125 aggccgatgtggaaaggaaattatcacagatgattcttga 1164
||||||||||||||||||||||||||||||||||||||||
Sbjct: 44261429 aggccgatgtggaaaggaaattatcacagatgattcttga 44261390
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1089 agattgaacacatatctagcctcatcaaactctccaagg 1127
|||||||||||||||||||||||||||||||||||||||
Sbjct: 44260511 agattgaacacatatctagcctcatcaaactctccaagg 44260473
Score = 77.8 bits (39), Expect = 1e-11
Identities = 39/39 (100%)
Strand = Plus / Minus
Query: 1089 agattgaacacatatctagcctcatcaaactctccaagg 1127
|||||||||||||||||||||||||||||||||||||||
Sbjct: 44261728 agattgaacacatatctagcctcatcaaactctccaagg 44261690
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,261,462
Number of extensions: 291
Number of successful extensions: 291
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 15
Length of query: 1332
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1311
Effective length of database: 2,808,413,156
Effective search space: 3681829647516
Effective search space used: 3681829647516
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)