Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007296
(645 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001020513.1| 40S ribosomal protein S13 [Bos taurus]. 300 5e-82
Alignment gi|XP_002692167.1| PREDICTED: ribosomal protein S13-like [Bos t... 294 4e-80
Alignment gi|XP_001251496.1| PREDICTED: ribosomal protein S13-like [Bos t... 294 4e-80
>ref|NP_001020513.1| 40S ribosomal protein S13 [Bos taurus].
Length = 151
Score = 300 bits (769), Expect = 5e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_002692167.1| PREDICTED: ribosomal protein S13-like [Bos taurus].
Length = 151
Score = 294 bits (753), Expect = 4e-80
Identities = 148/150 (98%), Positives = 148/150 (98%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGK LSQSALPYRRSVPTWLKLT DDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKDLSQSALPYRRSVPTWLKLTCDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALV 538
RIHRLARYYKTKRVLPPNWKYESSTASALV
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALV 150
>ref|XP_001251496.1| PREDICTED: ribosomal protein S13-like [Bos taurus].
Length = 151
Score = 294 bits (753), Expect = 4e-80
Identities = 148/150 (98%), Positives = 148/150 (98%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGK LSQSALPYRRSVPTWLKLT DDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKDLSQSALPYRRSVPTWLKLTCDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALV 538
RIHRLARYYKTKRVLPPNWKYESSTASALV
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALV 150
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 22,377,849
Number of extensions: 596930
Number of successful extensions: 2255
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2238
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 117
Effective length of database: 14,438,750
Effective search space: 1689333750
Effective search space used: 1689333750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007296
(645 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864902.1| PREDICTED: similar to ribosomal protein S13 iso... 300 6e-82
Alignment gi|XP_852037.1| PREDICTED: similar to ribosomal protein S13 iso... 300 6e-82
Alignment gi|XP_537358.1| PREDICTED: similar to ribosomal protein S13 [Ca... 226 1e-59
>ref|XP_864902.1| PREDICTED: similar to ribosomal protein S13 isoform 2 [Canis
familiaris].
Length = 151
Score = 300 bits (769), Expect = 6e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_852037.1| PREDICTED: similar to ribosomal protein S13 isoform 1 [Canis
familiaris].
Length = 151
Score = 300 bits (769), Expect = 6e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_537358.1| PREDICTED: similar to ribosomal protein S13 [Canis familiaris].
Length = 113
Score = 226 bits (577), Expect = 1e-59
Identities = 113/113 (100%), Positives = 113/113 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 427
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF 113
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 23,086,669
Number of extensions: 563442
Number of successful extensions: 2231
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2229
Number of HSP's successfully gapped: 3
Length of query: 215
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 117
Effective length of database: 15,607,576
Effective search space: 1826086392
Effective search space used: 1826086392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007296
(645 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008.1| 40S ribosomal protein S13 [Homo sapiens]. 300 5e-82
>ref|NP_001008.1| 40S ribosomal protein S13 [Homo sapiens].
Length = 151
Score = 300 bits (769), Expect = 5e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 22,650,214
Number of extensions: 547761
Number of successful extensions: 2259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2258
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 117
Effective length of database: 15,066,692
Effective search space: 1762802964
Effective search space used: 1762802964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007296
(645 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003086945.1| PREDICTED: 40S ribosomal protein S13-like [M... 300 5e-82
Alignment gi|NP_080809.1| 40S ribosomal protein S13 [Mus musculus]. 300 5e-82
Alignment gi|XP_900154.1| PREDICTED: 40S ribosomal protein S13-like [Mus ... 297 5e-81
Alignment gi|XP_003086751.1| PREDICTED: 40S ribosomal protein S13-like [M... 297 5e-81
Alignment gi|XP_001480852.1| PREDICTED: 40S ribosomal protein S13-like [M... 293 1e-79
Alignment gi|XP_003086697.1| PREDICTED: 40S ribosomal protein S13-like [M... 293 1e-79
Alignment gi|XP_001000226.2| PREDICTED: 40S ribosomal protein S13-like [M... 286 1e-77
>ref|XP_003086945.1| PREDICTED: 40S ribosomal protein S13-like [Mus musculus].
Length = 151
Score = 300 bits (769), Expect = 5e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|NP_080809.1| 40S ribosomal protein S13 [Mus musculus].
Length = 151
Score = 300 bits (769), Expect = 5e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_900154.1| PREDICTED: 40S ribosomal protein S13-like [Mus musculus].
Length = 151
Score = 297 bits (760), Expect = 5e-81
Identities = 149/151 (98%), Positives = 150/151 (99%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKE+IYKL KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEKIYKLPKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_003086751.1| PREDICTED: 40S ribosomal protein S13-like [Mus musculus].
Length = 151
Score = 297 bits (760), Expect = 5e-81
Identities = 149/151 (98%), Positives = 150/151 (99%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKE+IYKL KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEKIYKLPKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_001480852.1| PREDICTED: 40S ribosomal protein S13-like [Mus musculus].
Length = 151
Score = 293 bits (749), Expect = 1e-79
Identities = 147/151 (97%), Positives = 148/151 (98%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSD VKEQIYKL KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDHVKEQIYKLPKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQV FVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVHFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
+IHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 KIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_003086697.1| PREDICTED: 40S ribosomal protein S13-like [Mus musculus].
Length = 151
Score = 293 bits (749), Expect = 1e-79
Identities = 147/151 (97%), Positives = 148/151 (98%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSD VKEQIYKL KKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDHVKEQIYKLPKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQV FVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVHFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
+IHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 KIHRLARYYKTKRVLPPNWKYESSTASALVA 151
>ref|XP_001000226.2| PREDICTED: 40S ribosomal protein S13-like [Mus musculus].
Length = 151
Score = 286 bits (731), Expect = 1e-77
Identities = 144/151 (95%), Positives = 146/151 (96%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MG MHAPGKGLSQSALPYR SVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGHMHAPGKGLSQSALPYRHSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKF LI IE+
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFCLIPIET 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLA Y+KTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLAXYFKTKRVLPPNWKYESSTASALVA 151
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 19,258,170
Number of extensions: 464082
Number of successful extensions: 1778
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1776
Number of HSP's successfully gapped: 7
Length of query: 215
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 118
Effective length of database: 12,704,067
Effective search space: 1499079906
Effective search space used: 1499079906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007296
(645 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123001.1| PREDICTED: 40S ribosomal protein S13-like [S... 300 3e-82
>ref|XP_003123001.1| PREDICTED: 40S ribosomal protein S13-like [Sus scrofa].
Length = 151
Score = 300 bits (769), Expect = 3e-82
Identities = 151/151 (100%), Positives = 151/151 (100%)
Frame = +2
Query: 89 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 268
MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV
Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGV 60
Query: 269 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 448
AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES
Sbjct: 61 AQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIES 120
Query: 449 RIHRLARYYKTKRVLPPNWKYESSTASALVA 541
RIHRLARYYKTKRVLPPNWKYESSTASALVA
Sbjct: 121 RIHRLARYYKTKRVLPPNWKYESSTASALVA 151
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 14,840,789
Number of extensions: 455285
Number of successful extensions: 1428
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1428
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 120
Effective length of database: 8,978,717
Effective search space: 1077446040
Effective search space used: 1077446040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007296
(645 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 874 0.0
Sscrofa_Chr03 531 e-148
Sscrofa_Chr11 507 e-141
Sscrofa_Chr01 375 e-101
Sscrofa_Chr02 341 3e-91
Sscrofa_Chr04 266 1e-68
Sscrofa_Chr12 172 2e-40
Sscrofa_ChrX 157 9e-36
>Sscrofa_Chr13
|| Length = 218635234
Score = 874 bits (441), Expect = 0.0
Identities = 505/525 (96%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 63 tttttcgttgcctgaccgccgccatcatgggtcgcatgcacgctccggggaagggcctgt 122
||||||| |||||||||||| || |||||||||||||||||||||| ||||| |||||||
Sbjct: 126464846 tttttcgctgcctgaccgccaccgtcatgggtcgcatgcacgctcccgggaaaggcctgt 126464905
Query: 123 cccagtcggctctgccctaccgccgcagcgtccccacctggctgaagctgacgtctgacg 182
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126464906 tccagttggctctgccctaccgccgcagcgtccccacctggctgaagctgacgtctgaca 126464965
Query: 183 acgtgaaggagcagatctacaaactggccaagaagggcctgactccctcacagatcggtg 242
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 126464966 atgtgaaggagcagatctacaaactggccaagaagggcctgactccctcacagataggtg 126465025
Query: 243 tgatcctgagagactcacacggtgttgcacaagtacgttttgtgacaggcaataaaatct 302
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 126465026 tgatcctgagagactcacatggtgttgcacaagtacgttttgtgacaggcaataaaatct 126465085
Query: 303 tgaggattcttaagtccaaaggacttgctcctgatcttcctgaggatctctaccatttaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126465086 tgaggattcttaagtccaaaggacttgctcctgatcttcctgaggatctctaccatttaa 126465145
Query: 363 ttaagaaagctgttgctgttcgaaagcatcttgaaaggaacagaaaggataaagatgcta 422
||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct: 126465146 ttaagaaagctgttgctgttcgaaagcatctcgagaggaacagagaggataaagatgcta 126465205
Query: 423 aattccgtctgattctgattgagagccgtattcaccggttggctcgatattacaagacca 482
|||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct: 126465206 aattccgtctgattctgattgagagccgtattcaccggttggcttgatactataagacca 126465265
Query: 483 aacgagtccttcccccaaattggaaatacgagtcatccacagcctctgccctggttgcat 542
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 126465266 aacgagtccttcccccatattggaaatacgagtcatccacagcctgtgccctggttgcat 126465325
Query: 543 aaacttgttggttgtatgcaaaacaataaaatcattgtttaatta 587
||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 126465326 aaacttgttggttgtatgc-aaacaataaaatcattgtttaatta 126465369
>Sscrofa_Chr03
|| Length = 144787322
Score = 531 bits (268), Expect = e-148
Identities = 398/438 (90%), Gaps = 5/438 (1%)
Strand = Plus / Plus
Query: 113 aagggcctgtcccagtcggctctgccctaccgccgcagcgtccccacctggctgaagc-t 171
|||||||||||||||| ||| |||||||||||||||||| |||||||| |||||| | |
Sbjct: 104040099 aagggcctgtcccagtgggccctgccctaccgccgcagcc-ccccacctagctgaaacct 104040157
Query: 172 gacgtctgacgacgtgaaggagcagatctacaaactggccaagaagggcctgactccctc 231
| | |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 104040158 gccatctgacgaagtgaaggagcaaatctacaaactggccaagaagggcctgactccctc 104040217
Query: 232 acagatcggtgtgatcctgagagactcacacggtgttgcacaagtacgttttgtgacagg 291
| | || ||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 104040218 aaacattagtgagatcctgagagactcacgtggtgttgcacaagtacgttttgtgacagg 104040277
Query: 292 caataaaatcttgaggattcttaagtccaaaggacttgctcctgatcttcctgaggatct 351
||||||||||||||| |||||||||||||||| || || |||| ||||| ||||||||
Sbjct: 104040278 caataaaatcttgagaattcttaagtccaaagaacctgttcctcatctt---gaggatct 104040334
Query: 352 ctaccatttaattaagaaagctgttgctgttcgaaagcatcttgaaaggaacagaaagga 411
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 104040335 ctaccatttaattaagaaagctgttgctgtttgaaagcatcttgagaggaacagaaagga 104040394
Query: 412 taaagatgctaaattccgtctgattctgattgagagccgtattcaccggttggctcgata 471
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 104040395 taaagatgctaaattctatctgattctgactgagagccgtattcaccggttggctcgata 104040454
Query: 472 ttacaagaccaaacgagtccttcccccaaattggaaatacgagtcatccacagcctctgc 531
||| ||||||||| ||||||||||||| | ||||||||| |||||| |||||||||||
Sbjct: 104040455 ttataagaccaaatgagtccttccccccagttggaaatatgagtcacccacagcctcttt 104040514
Query: 532 cctggttgcataaacttg 549
|||||| |||||||||||
Sbjct: 104040515 cctggtggcataaacttg 104040532
Score = 127 bits (64), Expect = 8e-27
Identities = 223/273 (81%), Gaps = 6/273 (2%)
Strand = Plus / Minus
Query: 279 gttttgtgacaggca-ataaaatcttgaggattcttaagtccaaaggacttgctcctgat 337
||||||| ||||||| ||||||||||||| ||||||| ||||||||||| |||||||
Sbjct: 98425644 gttttgttacaggcacataaaatcttgagagttcttaaatccaaaggactccctcctgac 98425585
Query: 338 cttcctgaggatctctaccatttaattaagaaagctgttgctgttcgaaagcatcttgaa 397
|||||||||||| ||| ||||||||| ||||||| ||| || | ||||||||| |
Sbjct: 98425584 tttcctgaggatccctatcatttaattgagaaagc---tgcgatttgcaagcatcttcag 98425528
Query: 398 aggaacagaaaggataaagatgctaaattccgtctgattctgattgagagccgtattcac 457
||| |||||| ||||||| |||||||||||| ||||||| ||||||||| | ||||||
Sbjct: 98425527 aggcacagaagggataaaaatgctaaattccttctgatttgaattgagagctgcattcac 98425468
Query: 458 cggttggctcgatattacaagaccaaacgagtccttcccccaaattggaaatacgagtca 517
||||| | | ||||| | |||||| | |||| ||| | |||||||||||| ||||
Sbjct: 98425467 tggttgacccaatattgta--accaaagcactcctcccctccaattggaaatactggtca 98425410
Query: 518 tccacagcctctgccctggttgcataaacttgt 550
|||| |||||||||||||| | |||||| ||||
Sbjct: 98425409 tccatagcctctgccctggcttcataaagttgt 98425377
Score = 63.9 bits (32), Expect = 1e-07
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 159 cctggctgaagctgacgtctgacgacgtgaaggagcagatctacaaactggccaag 214
|||||||||||||||| ||||| | ||||||||||| |||||||||||| |||||
Sbjct: 98425737 cctggctgaagctgacttctgatgctgtgaaggagcaaatctacaaactgaccaag 98425682
>Sscrofa_Chr11
|| Length = 87690581
Score = 507 bits (256), Expect = e-141
Identities = 450/515 (87%), Gaps = 26/515 (5%)
Strand = Plus / Plus
Query: 71 tgcctgaccgccgccatcatgggtcgcatgcacgctccggggaagggcctgtcccagtcg 130
||||||||||||||||||||| ||| |||| | |||| |||||||||||||||||| |
Sbjct: 37305042 tgcctgaccgccgccatcatgagtcacatgtatactcccaggaagggcctgtcccagttg 37305101
Query: 131 gctctgccctaccgccgcagcgtccccacctggctgaagctgacgtctgacgacgtgaag 190
||||||||||| ||||||||| |||||||||||||||||||||| ||||| || ||||||
Sbjct: 37305102 gctctgccctatcgccgcagcatccccacctggctgaagctgacctctgatgatgtgaag 37305161
Query: 191 gagcagatctacaaactggccaagaagggcctgactccctcacagatcggtgtgatcctg 250
||| |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||
Sbjct: 37305162 gagtagatctacaaactggccaagaaggacctgaccccctcacagattggtgtgatcctg 37305221
Query: 251 agagactcacacggtgttgcacaagtacgttttgtgacaggcaataaaatcttgaggatt 310
||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 37305222 agagactgacacggtgttg---------------tgacaggcaat-----cttgaggatt 37305261
Query: 311 cttaagtccaaaggacttgctcctgatcttcctgaggatctctaccatttaattaagaaa 370
||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct: 37305262 cttaagtccaaaggacttgcta---atcttcctgaggatctccaccatttaattgagaaa 37305318
Query: 371 gctgttgctgttcgaaagcatcttgaaaggaacagaaaggataaagatgctaaattccgt 430
||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 37305319 gctgttgctattcaaaagcatcttgagaggaacagaaaggataaagatgctaaattccat 37305378
Query: 431 ctgattctgattgagagccgtattcaccggttggctcgatattacaagaccaaacgagtc 490
|||||||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||||
Sbjct: 37305379 ctgattctgattgagagcagtattcacctgttggcttgatattataagaccgaacgagta 37305438
Query: 491 cttcccccaaattggaaatacgagtcatccacagcctctgccctggttgcataaacttgt 550
||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
Sbjct: 37305439 cttgccccaaattggaaatacgagtcatccatagcctctgccctgactgcataaact--t 37305496
Query: 551 tggttgtatgcaaaacaataaaatcattgtttaat 585
| ||||| | |||||||||||||||||||||||
Sbjct: 37305497 ttattgtactc-aaacaataaaatcattgtttaat 37305530
>Sscrofa_Chr01
|| Length = 315321322
Score = 375 bits (189), Expect = e-101
Identities = 243/261 (93%)
Strand = Plus / Minus
Query: 110 gggaagggcctgtcccagtcggctctgccctaccgccgcagcgtccccacctggctgaag 169
|||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||
Sbjct: 45410522 gggaagggtctgtcccagtctgctctgccctatcgccacagcgtccccacctggctgaag 45410463
Query: 170 ctgacgtctgacgacgtgaaggagcagatctacaaactggccaagaagggcctgactccc 229
|||| ||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 45410462 ctgatgtctggagatgtgaaggagcagatctacaaactggccaagaaggacctgactccc 45410403
Query: 230 tcacagatcggtgtgatcctgagagactcacacggtgttgcacaagtacgttttgtgaca 289
|||||||| ||| ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 45410402 tcacagatgggtatgatcctgagagactcacacggtgtagcacaagtaggttttgtgaca 45410343
Query: 290 ggcaataaaatcttgaggattcttaagtccaaaggacttgctcctgatcttcctgaggat 349
||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 45410342 ggcaaaaaaatcttgagaattcttaagtcccaaggacttgctcctgatcttcctgaggat 45410283
Query: 350 ctctaccatttaattaagaaa 370
||| ||||||||| |||||||
Sbjct: 45410282 ctccaccatttaactaagaaa 45410262
>Sscrofa_Chr02
|| Length = 162569375
Score = 341 bits (172), Expect = 3e-91
Identities = 172/172 (100%)
Strand = Plus / Plus
Query: 239 ggtgtgatcctgagagactcacacggtgttgcacaagtacgttttgtgacaggcaataaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45086300 ggtgtgatcctgagagactcacacggtgttgcacaagtacgttttgtgacaggcaataaa 45086359
Query: 299 atcttgaggattcttaagtccaaaggacttgctcctgatcttcctgaggatctctaccat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45086360 atcttgaggattcttaagtccaaaggacttgctcctgatcttcctgaggatctctaccat 45086419
Query: 359 ttaattaagaaagctgttgctgttcgaaagcatcttgaaaggaacagaaagg 410
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45086420 ttaattaagaaagctgttgctgttcgaaagcatcttgaaaggaacagaaagg 45086471
Score = 214 bits (108), Expect = 4e-53
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 1 gacgtgtgaggtcacttcctgcgtgcacggtggcttcctgcggcgctcccacctcctcgc 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 45084796 gacgtgtgaggtcacttcctgcgtgcacggtggcttcctgcggcgctcccacctcctctc 45084855
Query: 61 tctttttcgttgcctgaccgccgccatcatgggtcgcatgcacgctccgggg 112
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45084856 tctttttcgttgcctgaccgccgccatcatgggtcgcatgcacgctccgggg 45084907
Score = 196 bits (99), Expect = 1e-47
Identities = 102/103 (99%)
Strand = Plus / Plus
Query: 408 aggataaagatgctaaattccgtctgattctgattgagagccgtattcaccggttggctc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45086848 aggataaagatgctaaattccgtctgattctgattgagagccgtattcaccggttggctc 45086907
Query: 468 gatattacaagaccaaacgagtccttcccccaaattggaaata 510
|||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 45086908 gatattacaagaccaaacgagtccttcccccaaactggaaata 45086950
Score = 163 bits (82), Expect = 1e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 161 tggctgaagctgacgtctgacgacgtgaaggagcagatctacaaactggccaagaagggc 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45085283 tggctgaagctgacgtctgacgacgtgaaggagcagatctacaaactggccaagaagggc 45085342
Query: 221 ctgactccctcacagatcggtg 242
||||||||||||||||||||||
Sbjct: 45085343 ctgactccctcacagatcggtg 45085364
Score = 153 bits (77), Expect = 1e-34
Identities = 77/77 (100%)
Strand = Plus / Plus
Query: 511 cgagtcatccacagcctctgccctggttgcataaacttgttggttgtatgcaaaacaata 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45087556 cgagtcatccacagcctctgccctggttgcataaacttgttggttgtatgcaaaacaata 45087615
Query: 571 aaatcattgtttaatta 587
|||||||||||||||||
Sbjct: 45087616 aaatcattgtttaatta 45087632
Score = 99.6 bits (50), Expect = 2e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 111 ggaagggcctgtcccagtcggctctgccctaccgccgcagcgtccccacc 160
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45085050 ggaagggcctgtcccagtcggctctgccctaccgccgcagcgtccccacc 45085099
>Sscrofa_Chr04
|| Length = 143465943
Score = 266 bits (134), Expect = 1e-68
Identities = 268/309 (86%), Gaps = 9/309 (2%)
Strand = Plus / Plus
Query: 283 tgtgacaggcaataaaatcttgaggattcttaagtccaaaggacttgctcctgatcttcc 342
|||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||
Sbjct: 136325149 tgtgacaggcaataaaatcttgagaattcttgggtccaaaggacttgctcccgatcttcc 136325208
Query: 343 tgaggatctctaccatttaattaag----aaagctgttgctgttcgaaagcatcttgaaa 398
||| || ||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 136325209 tgaagagctctaccatttaattaattaacaaagctgttgctgctggaaagcatcttgaaa 136325268
Query: 399 ggaacagaaaggataaagatgctaaattccgtctgattctgattgagagccgtattcacc 458
||||||||||||||||||| | |||||| ||| |||||||||| ||| | ||||||||
Sbjct: 136325269 ggaacagaaaggataaaga---ttaattccatctaattctgattgcgagtcatattcacc 136325325
Query: 459 ggttggctcgatattacaagaccaaacgagtccttcccccaaattggaaatacgagtcat 518
||||| | ||||||| ||||||||| |||||||||||| ||||||||| |||||||
Sbjct: 136325326 agttgg-tagatattataagaccaaaagagtccttcccctctgttggaaatatgagtcat 136325384
Query: 519 ccacagcctctgccctggttgcataaacttgttggttgtatgcaaaacaataaaatcatt 578
|||||||||||| |||| ||||||||||||||||||| | || |||||||||||||
Sbjct: 136325385 ccacagcctctggcctgcccacataaacttgttggttgtactc-aagcaataaaatcatt 136325443
Query: 579 gtttaatta 587
|||||||||
Sbjct: 136325444 gtttaatta 136325452
Score = 182 bits (92), Expect = 2e-43
Identities = 175/200 (87%), Gaps = 2/200 (1%)
Strand = Plus / Plus
Query: 62 ctttttcgttgcctgaccgccgccatcatgggtcgcatgcacgctccggggaagggcctg 121
||||||| |||||||| ||| |||||||||||| ||||| |||||| || |||||||||
Sbjct: 136324684 ctttttcactgcctgactgcccccatcatgggtcacatgcccgctccagg-aagggcctg 136324742
Query: 122 tcccagtcggctctgccctaccgccgc-agcgtccccacctggctgaagctgacgtctga 180
|| ||||| |||||||||| | ||| ||||| |||||||| |||||||||||||||||
Sbjct: 136324743 tctcagtctgctctgccctcctgcccatagcgttcccacctgcctgaagctgacgtctga 136324802
Query: 181 cgacgtgaaggagcagatctacaaactggccaagaagggcctgactccctcacagatcgg 240
| | ||| |||||||||||||||||||||| ||||||| ||||||||||||||| |||||
Sbjct: 136324803 caatgtgcaggagcagatctacaaactggcaaagaaggacctgactccctcacaaatcgg 136324862
Query: 241 tgtgatcctgagagactcac 260
||||| ||||| ||||||||
Sbjct: 136324863 tgtgagcctgaaagactcac 136324882
>Sscrofa_Chr12
|| Length = 63588571
Score = 172 bits (87), Expect = 2e-40
Identities = 148/167 (88%), Gaps = 1/167 (0%)
Strand = Plus / Plus
Query: 369 aagctgttgctgttcgaaagcatcttgaaaggaacagaaaggataaagatgctaaattcc 428
|||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||| ||||
Sbjct: 2167464 aagctgttgctgttcgaaagcatcctgagaggaacagaaaggctaaagatgataa-ttcc 2167522
Query: 429 gtctgattctgattgagagccgtattcaccggttggctcgatattacaagaccaaacgag 488
|||||||||||| |||||||||| ||||| | ||||||| | |||| ||||||| ||||
Sbjct: 2167523 gtctgattctgactgagagccgtgatcaccagctggctcgctcttacgagaccaagcgag 2167582
Query: 489 tccttcccccaaattggaaatacgagtcatccacagcctctgccctg 535
|||| |||||||| |||||||| | ||| ||||||||||||||||||
Sbjct: 2167583 tcctccccccaaagtggaaatatgtgtcgtccacagcctctgccctg 2167629
Score = 172 bits (87), Expect = 2e-40
Identities = 148/167 (88%), Gaps = 1/167 (0%)
Strand = Plus / Minus
Query: 369 aagctgttgctgttcgaaagcatcttgaaaggaacagaaaggataaagatgctaaattcc 428
|||||||||||||||||||||||| ||| ||||||||||||| |||||||| ||| ||||
Sbjct: 2353739 aagctgttgctgttcgaaagcatcctgagaggaacagaaaggctaaagatgataa-ttcc 2353681
Query: 429 gtctgattctgattgagagccgtattcaccggttggctcgatattacaagaccaaacgag 488
|||||||||||| |||||||||| ||||| | ||||||| | |||| ||||||| ||||
Sbjct: 2353680 gtctgattctgactgagagccgtgatcaccagctggctcgctcttacgagaccaagcgag 2353621
Query: 489 tccttcccccaaattggaaatacgagtcatccacagcctctgccctg 535
|||| |||||||| |||||||| | ||| ||||||||||||||||||
Sbjct: 2353620 tcctccccccaaagtggaaatatgtgtcgtccacagcctctgccctg 2353574
>Sscrofa_ChrX
|| Length = 144288218
Score = 157 bits (79), Expect = 9e-36
Identities = 325/399 (81%), Gaps = 6/399 (1%)
Strand = Plus / Minus
Query: 185 gtgaaggagcagatctacaaactggccaagaagggcctgactccctcacagatcggtgtg 244
|||||||||||||||||||||| ||||||| ||| |||||||||||||| || ||| ||
Sbjct: 88607545 gtgaaggagcagatctacaaacaggccaagtaggttctgactccctcacaaattggtatg 88607486
Query: 245 atcctgagagactcacacggtgttgcacaagtacgttttgtgacaggcaataaaatcttg 304
||| |||||| || ||| ||| ||||||||||| ||||||||||||||||| ||||||||
Sbjct: 88607485 atcttgagaggcttacatggtattgcacaagtatgttttgtgacaggcaatgaaatcttg 88607426
Query: 305 aggattcttaagtccaaaggacttgctcctgatcttcctgaggatctctaccatttaatt 364
|| ||| |||||||| ||| | || |||||||||| |||| ||||| ||||| ||
Sbjct: 88607425 agaatt-ttaagtccgaagaatatg-agctgatcttccagagggtctctctcattt-gtt 88607369
Query: 365 aagaaagctgttgctgttcgaaagcatcttgaaaggaacagaaaggataaagatgctaaa 424
| |||| |||||| || ||| |||| |||| ||||||||||| || ||||||||||||
Sbjct: 88607368 gaaaaagaggttgctctttgaaggcatattgagaggaacagaaatgacaaagatgctaaa 88607309
Query: 425 ttccgtctgattctgattgagagccgtattcaccggttggctcgatattacaagaccaaa 484
|||| |||| ||||||||| ||||| ||| ||| ||| | |||| | |||||
Sbjct: 88607308 ttccaaaggatttggattgagagtggtatttaccagttttctcaaaattattaaaccaag 88607249
Query: 485 cgagtccttcccccaaattggaaatacgagtcatccacagcctctgccctggttgcataa 544
|||| ||||| || |||||||||||| |||| ||||||| ||||||||| ||| ||| |
Sbjct: 88607248 tgagt-cttcctcccaattggaaatacaagtcctccacag-ctctgccctagttacatta 88607191
Query: 545 acttgttggttgtatgcaaaacaataaaatcattgttta 583
| |||| |||||||| | || ||||||||| ||||||||
Sbjct: 88607190 atttgtaggttgtattc-aagcaataaaataattgttta 88607153
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 15,644,649
Number of extensions: 358
Number of successful extensions: 358
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 20
Length of query: 645
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 624
Effective length of database: 2,808,413,156
Effective search space: 1752449809344
Effective search space used: 1752449809344
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)