Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007313
(1287 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776436.1| T-cell surface glycoprotein CD3 epsilon chain p... 219 4e-57
>ref|NP_776436.1| T-cell surface glycoprotein CD3 epsilon chain precursor [Bos
taurus].
Length = 192
Score = 219 bits (558), Expect = 4e-57
Identities = 114/198 (57%), Positives = 137/198 (69%), Gaps = 3/198 (1%)
Frame = +3
Query: 123 MPSGNLWKVLGLCLLSVGAWGQEDIERPDEDTQKTFKVSISGDKVELTCPEDPESEKMTW 302
M SGNLW+ LGLCLL VGAW Q D D QK ++VSISG+ VELTCP + E E + W
Sbjct: 1 MQSGNLWRALGLCLLLVGAWAQ------DADEQKPYEVSISGNTVELTCPREFEGE-IHW 53
Query: 303 KRNDMQIYESYDNYMLLESFSEVENSGYYTCTVGE---KTSHRLYLKARVCENCVEVDLM 473
K+ND Q+ +LLE+FSE++NSGYY C + E + +H LYLKARVC+NC+EV+LM
Sbjct: 54 KQNDEQMKGYTGKQLLLENFSEMDNSGYYQCYMTEGNKEAAHTLYLKARVCQNCMEVNLM 113
Query: 474 AXXXXXXXXXXXXLGLLMVVYYYSKSRKAKAMPVTXXXXXXXXXXXQNRERPPPVPNPDY 653
LGLL++VYY+SKSRKAKA P+T QN+ RPPPVPNPDY
Sbjct: 114 EVATIIVVDICVTLGLLLLVYYWSKSRKAKASPMTRGAGAGGRPRGQNKGRPPPVPNPDY 173
Query: 654 EPIRKGQRDLYAGLNQRG 707
EPIRKGQRDLYAGLNQRG
Sbjct: 174 EPIRKGQRDLYAGLNQRG 191
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 51,997,920
Number of extensions: 1506002
Number of successful extensions: 6417
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6405
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,207,134
Effective search space: 4603111416
Effective search space used: 4603111416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007313
(1287 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003379.1| T-cell surface glycoprotein CD3 epsilon chai... 201 2e-51
>ref|NP_001003379.1| T-cell surface glycoprotein CD3 epsilon chain precursor [Canis
lupus familiaris].
Length = 202
Score = 201 bits (510), Expect = 2e-51
Identities = 104/201 (51%), Positives = 134/201 (66%), Gaps = 6/201 (2%)
Frame = +3
Query: 123 MPSGNLWKVLGLCLLSVGAWGQ-EDIERPDEDT----QKTFKVSISGDKVELTCPEDPES 287
M S NLW++LGLCLLSVGAWGQ ED + D+ T +K FKVSISG +V +TCP+
Sbjct: 1 MQSRNLWRILGLCLLSVGAWGQDEDFKASDDLTSISPEKRFKVSISGTEVVVTCPDVFGY 60
Query: 288 EKMTWKRNDMQIYESYDNYMLLESFSEVENSGYYTCTVGE-KTSHRLYLKARVCENCVEV 464
+ + W++ND + + + + + FSEV++SGYY C K LYL+ARVC NC+EV
Sbjct: 61 DNIKWEKNDNLVEGASNRELSQKEFSEVDDSGYYACYADSIKEKSYLYLRARVCANCIEV 120
Query: 465 DLMAXXXXXXXXXXXXLGLLMVVYYYSKSRKAKAMPVTXXXXXXXXXXXQNRERPPPVPN 644
+LMA LGLL++VYY+SK+RKA A PV QN+E+PPPVPN
Sbjct: 121 NLMAVVTIIVADICLTLGLLLMVYYWSKTRKANAKPVMRGTGAGSRPRGQNKEKPPPVPN 180
Query: 645 PDYEPIRKGQRDLYAGLNQRG 707
PDYEPIRKGQ+DLY+GLNQRG
Sbjct: 181 PDYEPIRKGQQDLYSGLNQRG 201
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,158,078
Number of extensions: 1544393
Number of successful extensions: 6970
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6942
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 323
Effective length of database: 15,340,888
Effective search space: 4955106824
Effective search space used: 4955106824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007313
(1287 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000724.1| T-cell surface glycoprotein CD3 epsilon chain p... 201 1e-51
>ref|NP_000724.1| T-cell surface glycoprotein CD3 epsilon chain precursor [Homo
sapiens].
Length = 207
Score = 201 bits (511), Expect = 1e-51
Identities = 108/206 (52%), Positives = 133/206 (64%), Gaps = 12/206 (5%)
Frame = +3
Query: 123 MPSGNLWKVLGLCLLSVGAWGQEDIERPDEDTQKTFKVSISGDKVELTCPEDPESEKMTW 302
M SG W+VLGLCLLSVG WGQ+ E TQ +KVSISG V LTCP+ P SE + W
Sbjct: 1 MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSE-ILW 59
Query: 303 KRNDMQI--------YESYDNYMLLESFSEVENSGYYTC----TVGEKTSHRLYLKARVC 446
+ ND I S ++++ L+ FSE+E SGYY C + E + LYL+ARVC
Sbjct: 60 QHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVC 119
Query: 447 ENCVEVDLMAXXXXXXXXXXXXLGLLMVVYYYSKSRKAKAMPVTXXXXXXXXXXXQNRER 626
ENC+E+D+M+ GLL++VYY+SK+RKAKA PVT QN+ER
Sbjct: 120 ENCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAKPVTRGAGAGGRQRGQNKER 179
Query: 627 PPPVPNPDYEPIRKGQRDLYAGLNQR 704
PPPVPNPDYEPIRKGQRDLY+GLNQR
Sbjct: 180 PPPVPNPDYEPIRKGQRDLYSGLNQR 205
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,208,757
Number of extensions: 1520993
Number of successful extensions: 6169
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6147
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 324
Effective length of database: 14,835,944
Effective search space: 4806845856
Effective search space used: 4806845856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007313
(1287 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031674.1| T-cell surface glycoprotein CD3 epsilon chain p... 191 1e-48
>ref|NP_031674.1| T-cell surface glycoprotein CD3 epsilon chain precursor [Mus
musculus].
Length = 189
Score = 191 bits (485), Expect = 1e-48
Identities = 102/189 (53%), Positives = 126/189 (66%), Gaps = 1/189 (0%)
Frame = +3
Query: 141 WKVLGLCLLSVGAWGQEDIERPDEDTQKTFKVSISGDKVELTCPEDPESEKMTWKRNDMQ 320
W +L L LL+VG Q+D E + +KVSISG VELTCP D + E + W++N +
Sbjct: 7 WGILCLSLLAVGTC-QDDAENIE------YKVSISGTSVELTCPLDSD-ENLKWEKNGQE 58
Query: 321 IYESYDNYMLLESFSEVENSGYYTC-TVGEKTSHRLYLKARVCENCVEVDLMAXXXXXXX 497
+ + +D +++L+ FSEVE+SGYY C T + LYLKARVCE CVEVDL A
Sbjct: 59 LPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVCEYCVEVDLTAVAIIIIV 118
Query: 498 XXXXXLGLLMVVYYYSKSRKAKAMPVTXXXXXXXXXXXQNRERPPPVPNPDYEPIRKGQR 677
LGLLMV+YY+SK+RKAKA PVT QN+ERPPPVPNPDYEPIRKGQR
Sbjct: 119 DICITLGLLMVIYYWSKNRKAKAKPVTRGTGAGSRPRGQNKERPPPVPNPDYEPIRKGQR 178
Query: 678 DLYAGLNQR 704
DLY+GLNQR
Sbjct: 179 DLYSGLNQR 187
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,081,207
Number of extensions: 1274440
Number of successful extensions: 4999
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4973
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 325
Effective length of database: 12,493,815
Effective search space: 4060489875
Effective search space used: 4060489875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007313
(1287 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999392.1| T-cell surface glycoprotein CD3 epsilon chain p... 352 2e-97
>ref|NP_999392.1| T-cell surface glycoprotein CD3 epsilon chain precursor [Sus
scrofa].
Length = 196
Score = 352 bits (904), Expect = 2e-97
Identities = 172/196 (87%), Positives = 173/196 (88%)
Frame = +3
Query: 123 MPSGNLWKVLGLCLLSVGAWGQEDIERPDEDTQKTFKVSISGDKVELTCPEDPESEKMTW 302
MPSGNLWKVLGLCLLSVGAWGQEDIERPDEDTQKTFKVSISGDKVELTCPEDPESEKMTW
Sbjct: 1 MPSGNLWKVLGLCLLSVGAWGQEDIERPDEDTQKTFKVSISGDKVELTCPEDPESEKMTW 60
Query: 303 KRNDMQIYESYDNYMLLESFSEVENSGYYTCTVGEKTSHRLYLKARVCENCVEVDLMAXX 482
KRNDMQIYESYDNYMLLESFSEVENSGYYTCTVGEKTSHRLYLKARVCENCVEVDLMA
Sbjct: 61 KRNDMQIYESYDNYMLLESFSEVENSGYYTCTVGEKTSHRLYLKARVCENCVEVDLMAVV 120
Query: 483 XXXXXXXXXXLGLLMVVYYYSKSRKAKAMPVTXXXXXXXXXXXQNRERPPPVPNPDYEPI 662
LGLLMVVYYYSKSRKAKAMPVT QNRERPPPVPNPDYEPI
Sbjct: 121 TIIVVDICITLGLLMVVYYYSKSRKAKAMPVTRGAGAGGRPRGQNRERPPPVPNPDYEPI 180
Query: 663 RKGQRDLYAGLNQRGR 710
RKGQRDLY+GLNQRGR
Sbjct: 181 RKGQRDLYSGLNQRGR 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,529,749
Number of extensions: 971742
Number of successful extensions: 4166
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4132
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 327
Effective length of database: 8,804,438
Effective search space: 2879051226
Effective search space used: 2879051226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007313
(1287 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1144 0.0
Sscrofa_Chr07 137 2e-29
>Sscrofa_Chr09
|| Length = 153670197
Score = 1144 bits (577), Expect = 0.0
Identities = 609/617 (98%), Gaps = 2/617 (0%)
Strand = Plus / Plus
Query: 655 agcccatccggaaaggccagcgggacctgtatgctggcctgaatcagagaggcaggtgac 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674480 agcccatccggaaaggccagcgggacctgtatgctggcctgaatcagagaggcaggtgac 50674539
Query: 715 agcttcctgaagacactggctcctctccaggcctgctatccctgctccctgggcaaatct 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674540 agcttcctgaagacactggctcctctccaggcctgctatccctgctccctgggcaaatct 50674599
Query: 775 tggacccccctggagaatgtcctctgccttgtggggaactcataccctagagctttgtcc 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674600 tggacccccctggagaatgtcctctgccttgtggggaactcataccctagagctttgtcc 50674659
Query: 835 tccaccacctctttcctgccttctctgttggcacccagcccaaggatattgctgcctcat 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674660 tccaccacctctttcctgccttctctgttggcacccagcccaaggatattgctgcctcat 50674719
Query: 895 tatcttttgaaacatcatcgcatggctactcacccctcacacctgccctgcctcttgtca 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674720 tatcttttgaaacatcatcgcatggctactcacccctcacacctgccctgcctcttgtca 50674779
Query: 955 ggatatttatttctgttcttcacacacctcttagttcctccctttggttccctccttttc 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674780 ggatatttatttctgttcttcacacacctcttagttcctccctttggttccctccttttc 50674839
Query: 1015 ctgtgtaaaagttgtcccatccctgactattccatcaacatttctgtttctagctctctc 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674840 ctgtgtaaaagttgtcccatccctgactattccatcaacatttctgtttctagctctctc 50674899
Query: 1075 tttggcgaccctcagtggtaagggactgggtaaatgctggcagaggtcctgccctgctca 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50674900 tttggcgaccctcagtggtaagggactgggtaaatgctggcagaggtcctgccctgctca 50674959
Query: 1135 ccaaccctggcccagagctagccctgtgctccctccctccttccctcaacccctggcccc 1194
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 50674960 ccaaccctggcccagagctagccctgtgctccctccctccctccctccacccctggcccc 50675019
Query: 1195 tggacttttgcatcttcctaaatgtgctaggctccttgtcagctgagaaaagaaaag-aa 1253
||||| ||||||||| | ||||||||||||||||||||||||||||| | ||||||| ||
Sbjct: 50675020 tggacatttgcatctccataaatgtgctaggctccttgtcagctgag-agagaaaagaaa 50675078
Query: 1254 taaagtgtatttggctg 1270
|||||||||||||||||
Sbjct: 50675079 taaagtgtatttggctg 50675095
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Plus
Query: 226 catttaaagtctccatctctggagacaaagtagagctgacatgccctgaagatcctgaat 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50671464 catttaaagtctccatctctggagacaaagtagagctgacatgccctgaagatcctgaat 50671523
Query: 286 ctgaaaaaatgacttggaaacgaaatgatatgcaaatatatgagtcttatgacaactaca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50671524 ctgaaaaaatgacttggaaacgaaatgatatgcaaatatatgagtcttatgacaactaca 50671583
Query: 346 tgttgttagagagtttttcagaagtggagaacagtggttattatacctgcacagtcggag 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50671584 tgttgttagagagtttttcagaagtggagaacagtggttattatacctgcacagtcggag 50671643
Query: 406 agaagacgagccataggctctacctgaaagccagag 441
||||||||||||||||||||||||||||||||||||
Sbjct: 50671644 agaagacgagccataggctctacctgaaagccagag 50671679
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 440 agtgtgtgagaactgcgtggaggtggatctgatggcagtggtcacaatcattgtagttga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50672699 agtgtgtgagaactgcgtggaggtggatctgatggcagtggtcacaatcattgtagttga 50672758
Query: 500 catctgcatcactctgggtttgctgatggtggtgtattactacagcaagagtagaaaggc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50672759 catctgcatcactctgggtttgctgatggtggtgtattactacagcaagagtagaaaggc 50672818
Query: 560 caaggccatgcctgtgacgagaggagcgggtgctggaggcaggcccagggg 610
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50672819 caaggccatgcctgtgacgagaggagcgggtgctggaggcaggcccagggg 50672869
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 66 gaagttataagccaactggcctccgccatcttaagtagcatagtgtctgcaagaaagatg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50660990 gaagttataagccaactggcctccgccatcttaagtagcatagtgtctgcaagaaagatg 50661049
Query: 126 ccgtcggggaacctctggaaagttctgggactctgcctcttatcag 171
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50661050 ccgtcggggaacctctggaaagttctgggactctgcctcttatcag 50661095
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 cacttcctgtgtggggctcagaaacccgcctcccctcccagccttaggtgcctgcttcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50660811 cacttcctgtgtggggctcagaaacccgcctcccctcccagccttaggtgcctgcttcgg 50660870
Query: 61 aaaatg 66
||||||
Sbjct: 50660871 aaaatg 50660876
Score = 95.6 bits (48), Expect = 6e-17
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 609 ggacaaaacagggagaggccaccacctgtccccaatccagactatgag 656
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50673624 ggacaaaacagggagaggccaccacctgtccccaatccagactatgag 50673671
>Sscrofa_Chr07
|| Length = 134764511
Score = 137 bits (69), Expect = 2e-29
Identities = 126/144 (87%), Gaps = 2/144 (1%)
Strand = Plus / Minus
Query: 1033 atccctgactattccatcaacatttct--gtttctagctctctctttggcgaccctcagt 1090
||||||||||||| ||||| | ||||| |||||||||||||||||||| | ||||| ||
Sbjct: 41822241 atccctgactatttcatcagcctttctctgtttctagctctctctttggtgcccctcggt 41822182
Query: 1091 ggtaagggactgggtaaatgctggcagaggtcctgccctgctcaccaaccctggcccaga 1150
|| || ||||||||||||| |||| ||||||||| ||||||||| || ||||||||||
Sbjct: 41822181 gggaacagactgggtaaatgatggctgaggtcctgtcctgctcacagacactggcccaga 41822122
Query: 1151 gctagccctgtgctccctccctcc 1174
|||||||||| |||||||||||||
Sbjct: 41822121 gctagccctgcgctccctccctcc 41822098
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,599,019
Number of extensions: 888
Number of successful extensions: 888
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 888
Number of HSP's successfully gapped: 7
Length of query: 1287
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1266
Effective length of database: 2,808,413,156
Effective search space: 3555451055496
Effective search space used: 3555451055496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)