Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007314
(726 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069115.1| myosin regulatory light chain 2, skeletal mu... 312 2e-85
Alignment gi|XP_002698161.1| PREDICTED: myosin light chain 2, precursor l... 243 9e-65
Alignment gi|NP_001030197.1| myosin regulatory light chain 2, ventricular... 242 3e-64
Alignment gi|XP_002686938.1| PREDICTED: myosin light chain 2a-like [Bos t... 212 3e-55
Alignment gi|XP_585011.4| PREDICTED: myosin light chain 2a-like [Bos taur... 212 3e-55
Alignment gi|XP_874695.3| PREDICTED: myosin light chain 2, precursor lymp... 197 1e-50
Alignment gi|NP_001015640.1| myosin regulatory light polypeptide 9 [Bos t... 180 9e-46
Alignment gi|NP_001077233.1| myosin regulatory light chain 12B [Bos tauru... 176 1e-44
Alignment gi|XP_002706993.1| PREDICTED: myosin regulatory light chain MRC... 176 1e-44
Alignment gi|NP_001068702.1| myosin regulatory light chain 9 [Bos taurus]. 175 3e-44
>ref|NP_001069115.1| myosin regulatory light chain 2, skeletal muscle isoform [Bos
taurus].
Length = 170
Score = 312 bits (799), Expect = 2e-85
Identities = 153/156 (98%), Positives = 154/156 (98%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSS+VFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE
Sbjct: 15 GSSSVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 74
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
ASGPINFTVFL MFGEKLKGADPEDVITGAFKVLDPEGKGTIKK FLEELLTTQCDRFSQ
Sbjct: 75 ASGPINFTVFLNMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQ 134
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE
Sbjct: 135 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 170
>ref|XP_002698161.1| PREDICTED: myosin light chain 2, precursor lymphocyte-specific-like
[Bos taurus].
Length = 214
Score = 243 bits (621), Expect = 9e-65
Identities = 115/153 (75%), Positives = 133/153 (86%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
SSNVFSMFDQ+QIQEFKEAFT++DQNRDG IDKEDLRDT+ GR+NVKNEEL+AM+KEA
Sbjct: 62 SSNVFSMFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTYPPPGRINVKNEELEAMVKEA 121
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFTVFLTMFGEKLKG DPE+ I AFKV D EGKG +K F++E L TQ DRFS+E
Sbjct: 122 PGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEE 181
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
E+K M+AAFPPDV GN+DY+N+CYVITHG+ KD
Sbjct: 182 EVKQMFAAFPPDVCGNLDYRNLCYVITHGEEKD 214
>ref|NP_001030197.1| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Bos taurus].
Length = 166
Score = 242 bits (617), Expect = 3e-64
Identities = 114/156 (73%), Positives = 137/156 (87%), Gaps = 1/156 (0%)
Frame = +3
Query: 129 EGSS-NVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMM 305
EG++ NVFSMF+QTQIQEFKEAFT++DQNRDG IDK DLRDTFAA+GR+NVKNEE+D M+
Sbjct: 11 EGANYNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEML 70
Query: 306 KEASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRF 485
KEA GPINFTVFL MFGEKLKGADPE+ I AFKV DPEGKG +K +++E+LTTQ +RF
Sbjct: 71 KEAPGPINFTVFLQMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYIKEMLTTQAERF 130
Query: 486 SQEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
S+EEI M+AAFPPDV GN+DYKN+ ++ITHG+ KD
Sbjct: 131 SKEEIDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 166
>ref|XP_002686938.1| PREDICTED: myosin light chain 2a-like [Bos taurus].
Length = 235
Score = 212 bits (539), Expect = 3e-55
Identities = 96/155 (61%), Positives = 123/155 (79%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMF+Q QIQEFKEAF+ IDQNRDGII K DLR+T++ +G++NV EELDAM++E
Sbjct: 81 GSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLRETYSQLGKVNVPEEELDAMLQE 140
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
GPINFTVFLT+FGEKL G DPE+ I AF++ DP GKG + K +LL TQ D+FS
Sbjct: 141 GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRLFDPSGKGVVNKDEFRQLLLTQADKFSP 200
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E++ M+A P D+ GN+DYK++CY+ITHGD K++
Sbjct: 201 AEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE 235
>ref|XP_585011.4| PREDICTED: myosin light chain 2a-like [Bos taurus].
Length = 235
Score = 212 bits (539), Expect = 3e-55
Identities = 96/155 (61%), Positives = 123/155 (79%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMF+Q QIQEFKEAF+ IDQNRDGII K DLR+T++ +G++NV EELDAM++E
Sbjct: 81 GSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLRETYSQLGKVNVPEEELDAMLQE 140
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
GPINFTVFLT+FGEKL G DPE+ I AF++ DP GKG + K +LL TQ D+FS
Sbjct: 141 GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRLFDPSGKGVVNKDEFRQLLLTQADKFSP 200
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E++ M+A P D+ GN+DYK++CY+ITHGD K++
Sbjct: 201 AEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE 235
>ref|XP_874695.3| PREDICTED: myosin light chain 2, precursor lymphocyte-specific-like
[Bos taurus].
Length = 214
Score = 197 bits (500), Expect = 1e-50
Identities = 100/157 (63%), Positives = 121/157 (77%), Gaps = 4/157 (2%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLR----DTFAAMGRLNVKNEELDAM 302
SSNVFSMFDQ+QIQEFKE + Q G+ + + D +A+ R+NVKNEEL+AM
Sbjct: 62 SSNVFSMFDQSQIQEFKE----VGQLPLGLWEVTGMHGKPLDVGSALSRINVKNEELEAM 117
Query: 303 MKEASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDR 482
+KEA GPINFTVFLTMFGEKLKG DPE+ I AFKV D EGKG +K F++E L TQ DR
Sbjct: 118 VKEAPGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADR 177
Query: 483 FSQEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
FS+EE+K M+AAFPPDV GN+DY+N+CYVITHG+ KD
Sbjct: 178 FSEEEVKQMFAAFPPDVCGNLDYRNLCYVITHGEEKD 214
>ref|NP_001015640.1| myosin regulatory light polypeptide 9 [Bos taurus].
Length = 172
Score = 180 bits (457), Expect = 9e-46
Identities = 92/155 (59%), Positives = 113/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|NP_001077233.1| myosin regulatory light chain 12B [Bos taurus].
Length = 171
Score = 176 bits (447), Expect = 1e-44
Identities = 90/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + L+AMM EA
Sbjct: 18 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLEAMMNEA 76
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 77 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 136
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 137 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 170
>ref|XP_002706993.1| PREDICTED: myosin regulatory light chain MRCL2-like [Bos taurus].
Length = 171
Score = 176 bits (447), Expect = 1e-44
Identities = 90/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + L+AMM EA
Sbjct: 18 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLEAMMNEA 76
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 77 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 136
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 137 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 170
>ref|NP_001068702.1| myosin regulatory light chain 9 [Bos taurus].
Length = 172
Score = 175 bits (444), Expect = 3e-44
Identities = 91/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A+MG+ N +E L+ MM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK-NPTDEYLEGMMSEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E G I + L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ M+ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDEMYREAPIDKKGNFNYVEFTRILKHG-AKDKD 171
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 27,862,935
Number of extensions: 799803
Number of successful extensions: 2455
Number of sequences better than 1.0e-05: 33
Number of HSP's gapped: 2424
Number of HSP's successfully gapped: 33
Length of query: 242
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 143
Effective length of database: 14,405,662
Effective search space: 2060009666
Effective search space used: 2060009666
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007314
(726 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536899.2| PREDICTED: similar to Myosin regulatory light c... 312 2e-85
Alignment gi|XP_850206.1| PREDICTED: similar to myosin light chain 2, pre... 249 1e-66
Alignment gi|NP_001003069.1| myosin regulatory light chain 2, ventricular... 244 7e-65
Alignment gi|XP_536281.2| PREDICTED: similar to Superfast myosin regulato... 204 7e-53
Alignment gi|XP_848839.1| PREDICTED: similar to Myosin regulatory light c... 180 1e-45
Alignment gi|XP_857360.1| PREDICTED: similar to myosin regulatory light c... 176 1e-44
Alignment gi|XP_537316.1| PREDICTED: similar to myosin regulatory light c... 176 1e-44
Alignment gi|XP_542980.2| PREDICTED: similar to Myosin regulatory light c... 174 7e-44
Alignment gi|XP_532394.1| PREDICTED: similar to Myosin regulatory light c... 174 1e-43
Alignment gi|XP_849419.1| PREDICTED: similar to Myosin regulatory light c... 170 1e-42
>ref|XP_536899.2| PREDICTED: similar to Myosin regulatory light chain 2, skeletal
muscle isoform (G2) (DTNB) (MLC-2) [Canis familiaris].
Length = 170
Score = 312 bits (799), Expect = 2e-85
Identities = 152/156 (97%), Positives = 154/156 (98%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE
Sbjct: 15 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 74
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKK FLEE+LTTQCDRFS
Sbjct: 75 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEEMLTTQCDRFSP 134
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
EEI+NMWAAFPPDVGGNVDYKNICYVITHGDAKDQE
Sbjct: 135 EEIRNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 170
>ref|XP_850206.1| PREDICTED: similar to myosin light chain 2, precursor
lymphocyte-specific [Canis familiaris].
Length = 167
Score = 249 bits (637), Expect = 1e-66
Identities = 118/153 (77%), Positives = 136/153 (88%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
SSNVFSMFDQ+QIQEFKEAFT++DQNRDG IDKEDLRDTFAA+GR+NVKNEEL+AM+KEA
Sbjct: 15 SSNVFSMFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEA 74
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFTVFLTMFGEKLKG DPE+ I AFKV D EGKG +K F++E L TQ DRFS+E
Sbjct: 75 PGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEE 134
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
E+K M+AAFPPDV GN+DY+N+CYVITHG+ KD
Sbjct: 135 EVKQMFAAFPPDVCGNLDYQNLCYVITHGEEKD 167
>ref|NP_001003069.1| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Canis lupus familiaris].
Length = 166
Score = 244 bits (622), Expect = 7e-65
Identities = 113/153 (73%), Positives = 135/153 (88%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVFSMF+QTQIQEFKEAFT++DQNRDG IDK DLRDTFAA+GR+NVKNEE+D M+KEA
Sbjct: 14 NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMLKEA 73
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFTVFLTMFGEKLKGADPE+ I AFKV DPEGKG ++ ++ E+LTTQ +RFS+E
Sbjct: 74 PGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLRADYVREMLTTQAERFSKE 133
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
EI M+AAFPPDV GN+DYKN+ ++ITHG+ KD
Sbjct: 134 EIDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 166
>ref|XP_536281.2| PREDICTED: similar to Superfast myosin regulatory light chain 2
(MyLC-2) (MYLC2) (Myosin regulatory light chain 5)
[Canis familiaris].
Length = 186
Score = 204 bits (519), Expect = 7e-53
Identities = 95/154 (61%), Positives = 124/154 (80%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
SSNVFS F+QTQIQEFKEAFT++DQNRDG IDKEDL+DT+A++G+ NVK+EELDAM+KEA
Sbjct: 33 SSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDEELDAMLKEA 92
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
SGPINFT+FL MFG KL G D E+ I AFK+LDP+GKG+I K +++ LL +Q D+ + E
Sbjct: 93 SGPINFTMFLNMFGAKLTGTDGEETILNAFKMLDPDGKGSINKDYIKRLLMSQADKMTAE 152
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E+ M+ D GN+DYK + YV+THG+ K++
Sbjct: 153 EVDQMFQFATIDAAGNLDYKALSYVLTHGEEKEE 186
>ref|XP_848839.1| PREDICTED: similar to Myosin regulatory light chain 2,
nonsarcomeric (Myosin RLC) isoform 1 [Canis familiaris].
Length = 178
Score = 180 bits (457), Expect = 1e-45
Identities = 92/155 (59%), Positives = 113/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E LDAMM EA
Sbjct: 25 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLDAMMNEA 83
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 84 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 143
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 144 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 177
>ref|XP_857360.1| PREDICTED: similar to myosin regulatory light chain-like isoform 4
[Canis familiaris].
Length = 172
Score = 176 bits (447), Expect = 1e-44
Identities = 90/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + L+AMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLEAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|XP_537316.1| PREDICTED: similar to myosin regulatory light chain-like isoform 1
[Canis familiaris].
Length = 172
Score = 176 bits (447), Expect = 1e-44
Identities = 90/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + L+AMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLEAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|XP_542980.2| PREDICTED: similar to Myosin regulatory light chain 2, smooth
muscle isoform (Myosin RLC) (LC20) [Canis familiaris].
Length = 379
Score = 174 bits (441), Expect = 7e-44
Identities = 90/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E L+ MM EA
Sbjct: 226 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLEGMMSEA 284
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E G I + L ELLTT DRF+ E
Sbjct: 285 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE 344
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ M+ P D GN +Y ++ HG AKD++
Sbjct: 345 EVDEMYREAPIDKKGNFNYVEFTRILKHG-AKDKD 378
>ref|XP_532394.1| PREDICTED: similar to Myosin regulatory light chain 2-A, smooth
muscle isoform (Myosin RLC-A) isoform 1 [Canis
familiaris].
Length = 172
Score = 174 bits (440), Expect = 1e-43
Identities = 89/155 (57%), Positives = 111/155 (71%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF ++DQNRDG IDKEDLRD A++G+ N +E LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMMDQNRDGFIDKEDLRDMLASLGK-NPTDEYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FL MFGEKL G DPEDVI AF D E GTI++ +L ELLTT D F+ E
Sbjct: 78 PGPINFTMFLMMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDWFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ H AKD++
Sbjct: 138 EVDELYREAPMDKKGNFNYTEFTRILKH-RAKDKD 171
>ref|XP_849419.1| PREDICTED: similar to Myosin regulatory light chain 2-A, smooth
muscle isoform (Myosin RLC-A) isoform 2 [Canis
familiaris].
Length = 172
Score = 170 bits (430), Expect = 1e-42
Identities = 89/155 (57%), Positives = 109/155 (70%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG ID EDL D A++G+ + E LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDLEDLHDMLASLGK-DPTTEYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINF +FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFAMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTTGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y + H DAKD++
Sbjct: 138 EMDELYRDAPVDKKGNFNYIEFTRNLKH-DAKDKD 171
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 29,083,650
Number of extensions: 803966
Number of successful extensions: 2727
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 2692
Number of HSP's successfully gapped: 50
Length of query: 242
Length of database: 18,874,504
Length adjustment: 100
Effective length of query: 142
Effective length of database: 15,540,904
Effective search space: 2206808368
Effective search space used: 2206808368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007314
(726 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037424.2| myosin regulatory light chain 2, skeletal muscl... 314 6e-86
Alignment gi|NP_000423.2| myosin regulatory light chain 2, ventricular/ca... 244 6e-65
Alignment gi|NP_612412.2| myosin regulatory light chain 10 [Homo sapiens]. 230 1e-60
Alignment gi|NP_067046.1| myosin regulatory light chain 2, atrial isoform... 210 1e-54
Alignment gi|NP_002468.1| myosin light chain 5 [Homo sapiens]. 207 1e-53
Alignment gi|NP_006462.1| myosin regulatory light chain 12A [Homo sapiens]. 180 1e-45
Alignment gi|NP_001138416.1| myosin regulatory light chain 12B [Homo sapi... 178 5e-45
Alignment gi|NP_291024.1| myosin regulatory light chain 12B [Homo sapiens]. 178 5e-45
Alignment gi|NP_001138417.1| myosin regulatory light chain 12B [Homo sapi... 178 5e-45
Alignment gi|NP_006088.2| myosin regulatory light polypeptide 9 isoform a... 174 7e-44
>ref|NP_037424.2| myosin regulatory light chain 2, skeletal muscle isoform [Homo
sapiens].
Length = 169
Score = 314 bits (804), Expect = 6e-86
Identities = 154/156 (98%), Positives = 155/156 (99%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSS+VFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE
Sbjct: 14 GSSSVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 73
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKK FLEELLTTQCDRFSQ
Sbjct: 74 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKKFLEELLTTQCDRFSQ 133
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE
Sbjct: 134 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 169
>ref|NP_000423.2| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Homo sapiens].
Length = 166
Score = 244 bits (623), Expect = 6e-65
Identities = 113/153 (73%), Positives = 135/153 (88%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVFSMF+QTQIQEFKEAFT++DQNRDG IDK DLRDTFAA+GR+NVKNEE+D M+KEA
Sbjct: 14 NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEA 73
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFTVFLTMFGEKLKGADPE+ I AFKV DPEGKG +K ++ E+LTTQ +RFS+E
Sbjct: 74 PGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKADYVREMLTTQAERFSKE 133
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
E+ M+AAFPPDV GN+DYKN+ ++ITHG+ KD
Sbjct: 134 EVDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 166
>ref|NP_612412.2| myosin regulatory light chain 10 [Homo sapiens].
Length = 226
Score = 230 bits (586), Expect = 1e-60
Identities = 117/187 (62%), Positives = 135/187 (72%), Gaps = 34/187 (18%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKE----------------------------------AFTVIDQN 212
SSNVFSMFDQ+QIQEFKE AFT++DQN
Sbjct: 40 SSNVFSMFDQSQIQEFKESLALSPRLERNGMISAHCNLCLTGSSNSPASASQAFTIMDQN 99
Query: 213 RDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEASGPINFTVFLTMFGEKLKGADPEDVI 392
RDG IDKEDLRDTFAA+GR+NVKNEEL+AM+KEA GPINFTVFLTMFGEKLKG DPE+ I
Sbjct: 100 RDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAPGPINFTVFLTMFGEKLKGTDPEETI 159
Query: 393 TGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNICYVI 572
AFKV D EGKG +K ++E L TQ DRFS+EE+K M+AAFPPDV GN+DY+N+CYVI
Sbjct: 160 LHAFKVFDTEGKGFVKADVIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNLCYVI 219
Query: 573 THGDAKD 593
THG+ KD
Sbjct: 220 THGEEKD 226
>ref|NP_067046.1| myosin regulatory light chain 2, atrial isoform [Homo sapiens].
Length = 175
Score = 210 bits (534), Expect = 1e-54
Identities = 95/155 (61%), Positives = 124/155 (80%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMF+Q QIQEFKEAF+ IDQNRDGII K DLR+T++ +G+++V EELDAM++E
Sbjct: 21 GSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKADLRETYSQLGKVSVPEEELDAMLQE 80
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
GPINFTVFLT+FGEKL G DPE+ I AF++ DP GKG + K ++LL TQ D+FS
Sbjct: 81 GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKGVVNKDEFKQLLLTQADKFSP 140
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E++ M+A P D+ GN+DYK++CY+ITHGD K++
Sbjct: 141 AEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE 175
>ref|NP_002468.1| myosin light chain 5 [Homo sapiens].
Length = 173
Score = 207 bits (526), Expect = 1e-53
Identities = 96/154 (62%), Positives = 125/154 (81%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
SSNVFS F+QTQIQEFKEAFT++DQNRDG IDKEDL+DT+A++G+ NVK++ELDAM+KEA
Sbjct: 20 SSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDAMLKEA 79
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
SGPINFT+FL +FGEKL G D E+ I AFK+LDP+GKG I K +++ LL +Q D+ + E
Sbjct: 80 SGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAE 139
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E+ M+ DV GN+DYK + YVITHG+ K++
Sbjct: 140 EVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE 173
>ref|NP_006462.1| myosin regulatory light chain 12A [Homo sapiens].
Length = 171
Score = 180 bits (457), Expect = 1e-45
Identities = 92/155 (59%), Positives = 113/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E LDAMM EA
Sbjct: 18 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLDAMMNEA 76
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 77 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 136
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 137 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 170
>ref|NP_001138416.1| myosin regulatory light chain 12B [Homo sapiens].
Length = 172
Score = 178 bits (451), Expect = 5e-45
Identities = 91/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|NP_291024.1| myosin regulatory light chain 12B [Homo sapiens].
Length = 172
Score = 178 bits (451), Expect = 5e-45
Identities = 91/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|NP_001138417.1| myosin regulatory light chain 12B [Homo sapiens].
Length = 172
Score = 178 bits (451), Expect = 5e-45
Identities = 91/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|NP_006088.2| myosin regulatory light polypeptide 9 isoform a [Homo sapiens].
Length = 172
Score = 174 bits (441), Expect = 7e-44
Identities = 90/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E L+ MM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLEGMMSEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E G I + L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ M+ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDEMYREAPIDKKGNFNYVEFTRILKHG-AKDKD 171
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 28,397,925
Number of extensions: 778239
Number of successful extensions: 2528
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 2500
Number of HSP's successfully gapped: 31
Length of query: 242
Length of database: 18,297,164
Length adjustment: 100
Effective length of query: 142
Effective length of database: 15,000,764
Effective search space: 2130108488
Effective search space used: 2130108488
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007314
(726 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_058034.1| myosin regulatory light chain 2, skeletal muscl... 318 3e-87
Alignment gi|NP_034991.3| myosin regulatory light chain 2, ventricular/ca... 248 3e-66
Alignment gi|NP_067624.2| myosin regulatory light chain 10 isoform 1 [Mus... 239 2e-63
Alignment gi|NP_001078856.1| myosin regulatory light chain 10 isoform 2 [... 210 1e-54
Alignment gi|NP_075017.2| myosin regulatory light chain 2, atrial isoform... 208 4e-54
Alignment gi|NP_080340.2| myosin light chain, regulatory B-like [Mus musc... 181 6e-46
Alignment gi|NP_075891.1| myosin regulatory light chain 12B [Mus musculus]. 178 4e-45
Alignment gi|NP_742116.1| myosin regulatory light polypeptide 9 [Mus musc... 174 6e-44
Alignment gi|NP_081692.1| calmodulin-like protein 3 [Mus musculus]. 85 6e-17
Alignment gi|NP_031616.1| calmodulin [Mus musculus]. 81 9e-16
>ref|NP_058034.1| myosin regulatory light chain 2, skeletal muscle isoform [Mus
musculus].
Length = 169
Score = 318 bits (815), Expect = 3e-87
Identities = 156/157 (99%), Positives = 156/157 (99%)
Frame = +3
Query: 129 EGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMK 308
EGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMK
Sbjct: 13 EGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMK 72
Query: 309 EASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFS 488
EASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKK FLEELLTTQCDRFS
Sbjct: 73 EASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKQFLEELLTTQCDRFS 132
Query: 489 QEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
QEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE
Sbjct: 133 QEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 169
>ref|NP_034991.3| myosin regulatory light chain 2, ventricular/cardiac muscle isoform
[Mus musculus].
Length = 166
Score = 248 bits (634), Expect = 3e-66
Identities = 116/154 (75%), Positives = 137/154 (88%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMF+QTQIQEFKEAFT++DQNRDG IDK DLRDTFAA+GR+NVKNEE+D M+KE
Sbjct: 13 GSSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKE 72
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
A GPINFTVFLTMFGEKLKGADPE+ I AFKV DPEGKG++K ++ E+LTTQ +RFS+
Sbjct: 73 APGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGSLKADYVREMLTTQAERFSK 132
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
EEI M+AAFPPDV GN+DYKN+ ++ITHG+ KD
Sbjct: 133 EEIDQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 166
>ref|NP_067624.2| myosin regulatory light chain 10 isoform 1 [Mus musculus].
Length = 147
Score = 239 bits (610), Expect = 2e-63
Identities = 112/147 (76%), Positives = 130/147 (88%)
Frame = +3
Query: 153 MFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEASGPINF 332
MFDQ+QIQEFKEAFT++DQNRDG IDKEDLRDTFAA+GR+NVKNEEL+AM+KEA GPINF
Sbjct: 1 MFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAPGPINF 60
Query: 333 TVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQEEIKNMW 512
TVFLTMFGEKLKG DPE+ I AFKV D EGKG +K F++E L TQ DRFS+EE+K M+
Sbjct: 61 TVFLTMFGEKLKGTDPEETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEEEVKQMF 120
Query: 513 AAFPPDVGGNVDYKNICYVITHGDAKD 593
AAFPPDV GN+DY+N+CYVITHG+ KD
Sbjct: 121 AAFPPDVCGNLDYRNLCYVITHGEEKD 147
>ref|NP_001078856.1| myosin regulatory light chain 10 isoform 2 [Mus musculus].
Length = 131
Score = 210 bits (534), Expect = 1e-54
Identities = 98/131 (74%), Positives = 114/131 (87%)
Frame = +3
Query: 201 IDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEASGPINFTVFLTMFGEKLKGADP 380
+DQNRDG IDKEDLRDTFAA+GR+NVKNEEL+AM+KEA GPINFTVFLTMFGEKLKG DP
Sbjct: 1 MDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEAPGPINFTVFLTMFGEKLKGTDP 60
Query: 381 EDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQEEIKNMWAAFPPDVGGNVDYKNI 560
E+ I AFKV D EGKG +K F++E L TQ DRFS+EE+K M+AAFPPDV GN+DY+N+
Sbjct: 61 EETILHAFKVFDTEGKGFVKADFIKEKLMTQADRFSEEEVKQMFAAFPPDVCGNLDYRNL 120
Query: 561 CYVITHGDAKD 593
CYVITHG+ KD
Sbjct: 121 CYVITHGEEKD 131
>ref|NP_075017.2| myosin regulatory light chain 2, atrial isoform [Mus musculus].
Length = 175
Score = 208 bits (529), Expect = 4e-54
Identities = 93/155 (60%), Positives = 124/155 (80%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMF+Q QIQEFKEAF+ IDQNRDGII K DL++T++ +GR++V EELDAM++E
Sbjct: 21 GSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLKETYSQLGRVSVPEEELDAMLQE 80
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
GPINFTVFLT+FGEKL G DPE+ I AF++ DP G+G + K ++LL TQ D+FS
Sbjct: 81 GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGQGVVNKEEFKQLLMTQADKFSP 140
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E++ ++A P D+ GN+DYK++CY+ITHGD K++
Sbjct: 141 AEVEQLFALTPMDLAGNIDYKSLCYIITHGDEKEE 175
>ref|NP_080340.2| myosin light chain, regulatory B-like [Mus musculus].
Length = 172
Score = 181 bits (458), Expect = 6e-46
Identities = 93/155 (60%), Positives = 113/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A+MG+ N +E LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGK-NPTDEYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEAIGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|NP_075891.1| myosin regulatory light chain 12B [Mus musculus].
Length = 172
Score = 178 bits (451), Expect = 4e-45
Identities = 91/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|NP_742116.1| myosin regulatory light polypeptide 9 [Mus musculus].
Length = 172
Score = 174 bits (441), Expect = 6e-44
Identities = 90/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E L+ MM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLEGMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E G I + L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ M+ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDEMYREAPIDKKGNFNYVEFTRILKHG-AKDKD 171
>ref|NP_081692.1| calmodulin-like protein 3 [Mus musculus].
Length = 149
Score = 84.7 bits (208), Expect = 6e-17
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 4/141 (2%)
Frame = +3
Query: 162 QTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMM----KEASGPIN 329
+ QI EFKEAF++ D++ DG I ++L ++G+ N EL M+ K+ +G ++
Sbjct: 7 EEQIAEFKEAFSLFDKDGDGSITTQELGTVMRSLGQ-NPTEAELQGMVNEIDKDGNGTVD 65
Query: 330 FTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQEEIKNM 509
F FLTM K+K D E+ I AF+V D +G G + L ++T ++ S EE+ M
Sbjct: 66 FPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSDEEVDEM 125
Query: 510 WAAFPPDVGGNVDYKNICYVI 572
A D G V+Y+ +++
Sbjct: 126 IQAADTDGDGQVNYEEFVHML 146
>ref|NP_031616.1| calmodulin [Mus musculus].
Length = 149
Score = 80.9 bits (198), Expect = 9e-16
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 162 QTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPIN 329
+ QI EFKEAF++ D++ DG I ++L ++G+ N EL M+ E +G I+
Sbjct: 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTID 65
Query: 330 FTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQEEIKNM 509
F FLTM K+K D E+ I AF+V D +G G I L ++T ++ + EE+ M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 510 WAAFPPDVGGNVDYKNICYVIT 575
D G V+Y+ ++T
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 23,883,415
Number of extensions: 645124
Number of successful extensions: 2079
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 2054
Number of HSP's successfully gapped: 29
Length of query: 242
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 144
Effective length of database: 12,674,031
Effective search space: 1825060464
Effective search space used: 1825060464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007314
(726 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001006592.1| myosin regulatory light chain 2, skeletal mu... 321 2e-88
Alignment gi|NP_998956.1| myosin light chain 2V [Sus scrofa]. 244 3e-65
Alignment gi|XP_003134933.1| PREDICTED: myosin regulatory light chain 2, ... 212 1e-55
Alignment gi|XP_003356877.1| PREDICTED: myosin light chain 5-like [Sus sc... 195 2e-50
Alignment gi|XP_003127890.1| PREDICTED: myosin regulatory light chain 12B... 178 3e-45
Alignment gi|XP_003127889.1| PREDICTED: myosin regulatory light chain 12B... 178 3e-45
Alignment gi|XP_003124429.2| PREDICTED: myosin regulatory light chain 10-... 174 3e-44
Alignment gi|XP_003360017.1| PREDICTED: myosin regulatory light polypepti... 174 4e-44
Alignment gi|NP_001038037.1| myosin regulatory light chain 2 protein [Sus... 168 3e-42
Alignment gi|XP_001928222.1| PREDICTED: hypothetical protein LOC100154056... 81 6e-16
>ref|NP_001006592.1| myosin regulatory light chain 2, skeletal muscle isoform [Sus
scrofa].
Length = 169
Score = 321 bits (823), Expect = 2e-88
Identities = 157/157 (100%), Positives = 157/157 (100%)
Frame = +3
Query: 129 EGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMK 308
EGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMK
Sbjct: 13 EGSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMK 72
Query: 309 EASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFS 488
EASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFS
Sbjct: 73 EASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFS 132
Query: 489 QEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
QEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE
Sbjct: 133 QEEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 169
>ref|NP_998956.1| myosin light chain 2V [Sus scrofa].
Length = 166
Score = 244 bits (624), Expect = 3e-65
Identities = 113/153 (73%), Positives = 137/153 (89%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVFSMF+QTQIQEFKEAFT++DQNRDG IDK DLRDTFAA+GR+NVKNEE+D M+KEA
Sbjct: 14 NSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAALGRVNVKNEEIDEMIKEA 73
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFTVFLTMFGEKLKGADPE+ I AFKV DPEGKG ++ +++E+LTTQ +RFS+E
Sbjct: 74 PGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLRADYVKEMLTTQAERFSKE 133
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
EI+ M+AAFPPDV GN+DYKN+ ++ITHG+ KD
Sbjct: 134 EIEQMFAAFPPDVTGNLDYKNLVHIITHGEEKD 166
>ref|XP_003134933.1| PREDICTED: myosin regulatory light chain 2, atrial isoform-like
[Sus scrofa].
Length = 175
Score = 212 bits (540), Expect = 1e-55
Identities = 96/155 (61%), Positives = 124/155 (80%)
Frame = +3
Query: 132 GSSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKE 311
GSSNVFSMF+Q QIQEFKEAF+ IDQNRDGII K DLR+T++ +G++NV EELDAM++E
Sbjct: 21 GSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKSDLRETYSQLGKVNVPEEELDAMLQE 80
Query: 312 ASGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQ 491
GPINFTVFLT+FGEKL G DPE+ I AF++ DP GKG + K ++LL TQ D+FS
Sbjct: 81 GKGPINFTVFLTLFGEKLNGTDPEEAILSAFRLFDPSGKGVVNKDQFKQLLLTQADKFSP 140
Query: 492 EEIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQ 596
E++ M+A P D+ GN+DYK++CY+ITHGD K++
Sbjct: 141 AEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE 175
>ref|XP_003356877.1| PREDICTED: myosin light chain 5-like [Sus scrofa].
Length = 338
Score = 195 bits (495), Expect = 2e-50
Identities = 90/153 (58%), Positives = 117/153 (76%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
SSNVFS F+QTQIQEFKEAFT++DQNRDG IDKEDL+DT+ ++G+ NVK++ELDAM+KEA
Sbjct: 186 SSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYTSLGKTNVKDDELDAMLKEA 245
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
SGPINF +FL MFGEKL G D E+ AFK+LDP+GKG+I K ++ LL +Q D +
Sbjct: 246 SGPINFNMFLNMFGEKLSGTDAEETTLNAFKMLDPDGKGSIHKDYIRRLLMSQADEMTAN 305
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKD 593
E+ M+ D GN+DYK + Y+ THG+ K+
Sbjct: 306 EVDQMFQFSTVDAAGNLDYKALSYMFTHGEEKE 338
>ref|XP_003127890.1| PREDICTED: myosin regulatory light chain 12B isoform 2 [Sus
scrofa].
Length = 172
Score = 178 bits (451), Expect = 3e-45
Identities = 91/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|XP_003127889.1| PREDICTED: myosin regulatory light chain 12B isoform 1 [Sus
scrofa].
Length = 172
Score = 178 bits (451), Expect = 3e-45
Identities = 91/155 (58%), Positives = 112/155 (72%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N + LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDAYLDAMMNEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 171
>ref|XP_003124429.2| PREDICTED: myosin regulatory light chain 10-like [Sus scrofa].
Length = 140
Score = 174 bits (442), Expect = 3e-44
Identities = 84/102 (82%), Positives = 93/102 (91%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
SSNVFSMFDQ+QIQEFKEAFT++DQNRDG IDKEDLRDTFAA+GR+NVKNEEL+AM+KEA
Sbjct: 36 SSNVFSMFDQSQIQEFKEAFTIMDQNRDGFIDKEDLRDTFAALGRINVKNEELEAMVKEA 95
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIK 440
GPINFTVFLTMFGEKLKG DPE+ I AFKV D EGKG +K
Sbjct: 96 PGPINFTVFLTMFGEKLKGTDPEETILHAFKVFDAEGKGFVK 137
>ref|XP_003360017.1| PREDICTED: myosin regulatory light polypeptide 9 isoform 1 [Sus
scrofa].
Length = 172
Score = 174 bits (441), Expect = 4e-44
Identities = 90/155 (58%), Positives = 109/155 (70%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL D A++G+ N +E L+ MM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLEGMMSEA 77
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E G I + L ELLTT DRF+ E
Sbjct: 78 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDE 137
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ M+ P D GN +Y ++ HG AKD++
Sbjct: 138 EVDEMYREAPIDKKGNFNYVEFTRILKHG-AKDKD 171
>ref|NP_001038037.1| myosin regulatory light chain 2 protein [Sus scrofa].
Length = 173
Score = 168 bits (425), Expect = 3e-42
Identities = 88/155 (56%), Positives = 106/155 (68%)
Frame = +3
Query: 135 SSNVFSMFDQTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA 314
+SNVF+MFDQ+QIQEFKEAF +IDQNRDG IDKEDL N +E LDAMM EA
Sbjct: 19 TSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHGHGLPPLGKNPTDEYLDAMMNEA 78
Query: 315 SGPINFTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQE 494
GPINFT+FLTMFGEKL G DPEDVI AF D E GTI++ +L ELLT DRF+ E
Sbjct: 79 PGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTPMGDRFTDE 138
Query: 495 EIKNMWAAFPPDVGGNVDYKNICYVITHGDAKDQE 599
E+ ++ P D GN +Y ++ HG AKD++
Sbjct: 139 EVDELYREAPIDKKGNFNYIEFTRILKHG-AKDKD 172
>ref|XP_001928222.1| PREDICTED: hypothetical protein LOC100154056 [Sus scrofa].
Length = 149
Score = 80.9 bits (198), Expect = 6e-16
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 162 QTQIQEFKEAFTVIDQNRDGIIDKEDLRDTFAAMGRLNVKNEELDAMMKEA----SGPIN 329
+ QI EFKEAF++ D++ DG I ++L ++G+ N EL M+ E +G I+
Sbjct: 7 EEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTID 65
Query: 330 FTVFLTMFGEKLKGADPEDVITGAFKVLDPEGKGTIKKHFLEELLTTQCDRFSQEEIKNM 509
F FLTM K+K D E+ I AF+V D +G G I L ++T ++ + EE+ M
Sbjct: 66 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 125
Query: 510 WAAFPPDVGGNVDYKNICYVIT 575
D G V+Y+ ++T
Sbjct: 126 IREADIDGDGQVNYEEFVQMMT 147
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 18,263,405
Number of extensions: 554103
Number of successful extensions: 1683
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 1651
Number of HSP's successfully gapped: 29
Length of query: 242
Length of database: 11,343,932
Length adjustment: 96
Effective length of query: 146
Effective length of database: 8,953,820
Effective search space: 1307257720
Effective search space used: 1307257720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007314
(726 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 377 e-102
Sscrofa_Chr17 76 3e-11
Sscrofa_Chr18 64 1e-07
>Sscrofa_Chr03
|| Length = 144787322
Score = 377 bits (190), Expect = e-102
Identities = 196/198 (98%)
Strand = Plus / Minus
Query: 496 agatcaagaacatgtgggcagccttccctcctgacgtgggcggcaacgtggactacaaga 555
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 18376993 agatcaagaacatgtgggcagccttcccccctgacgtgggcggcaacgtggactacaaga 18376934
Query: 556 acatctgctacgtcatcacgcacggcgacgccaaggaccaggagtaggggacctcttcgg 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18376933 acatctgctacgtcatcacgcacggcgacgccaaggaccaggagtaggggacctcttcgg 18376874
Query: 616 tctttgatggccaacaccttcctgccagtccaacccccctggctcgattcctaataaatt 675
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18376873 tctttgatggccaacactttcctgccagtccaacccccctggctcgattcctaataaatt 18376814
Query: 676 gaatgggtcttgtttctt 693
||||||||||||||||||
Sbjct: 18376813 gaatgggtcttgtttctt 18376796
Score = 208 bits (105), Expect = 3e-51
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 264 gggcgtctaaatgtgaagaatgaggagctagatgccatgatgaaggaagccagcggtccc 323
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 18378216 gggcgtctaaatgtgaagaatgaggagctagacgccatgatgaaggaagccagcggtccc 18378157
Query: 324 atcaacttcactgtcttcctgaccatgtttggggagaagctcaaaggtg 372
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18378156 atcaacttcactgtcttcctgaccatgtttggggagaagctcaaaggtg 18378108
Score = 190 bits (96), Expect = 7e-46
Identities = 96/96 (100%)
Strand = Plus / Minus
Query: 1 caggactatataactccagagggaccgccccaggctgactctctgctcctttccagccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18379771 caggactatataactccagagggaccgccccaggctgactctctgctcctttccagccag 18379712
Query: 61 agccactgccttgcccccaggagacttaagacatgg 96
||||||||||||||||||||||||||||||||||||
Sbjct: 18379711 agccactgccttgcccccaggagacttaagacatgg 18379676
Score = 188 bits (95), Expect = 3e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 95 ggcacccaagaaggccaagagaagggcagcggcagaaggaagctccaacgtcttctccat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18378847 ggcacccaagaaggccaagagaagggcagcggcagaaggaagctccaacgtcttctccat 18378788
Query: 155 gttcgatcagactcagatccaggagttcaaggagg 189
|||||||||||||||||||||||||||||||||||
Sbjct: 18378787 gttcgatcagactcagatccaggagttcaaggagg 18378753
Score = 161 bits (81), Expect = 6e-37
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 368 aggtgctgatcctgaggatgtgatcactggagccttcaaggttctggacccagaggggaa 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18378017 aggtgctgatcctgaggatgtgatcactggagccttcaaggttctggacccagaggggaa 18377958
Query: 428 gggtaccatcaagaagcactt 448
|||||||||||||||||||||
Sbjct: 18377957 gggtaccatcaagaagcactt 18377937
Score = 157 bits (79), Expect = 1e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 187 aggccttcacagtaattgaccagaaccgtgatggcattattgacaaggaagaccttcggg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18378496 aggccttcacagtaattgaccagaaccgtgatggcattattgacaaggaagaccttcggg 18378437
Query: 247 acaccttcgcagccatggg 265
|||||||||||||||||||
Sbjct: 18378436 acaccttcgcagccatggg 18378418
Score = 97.6 bits (49), Expect = 8e-18
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 449 cctggaggagctgcttaccacgcagtgtgaccgcttctcccaggaagag 497
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18377130 cctggaggagctgcttaccacgcagtgtgaccgcttctcccaggaagag 18377082
Score = 95.6 bits (48), Expect = 3e-17
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 273 aatgtgaagaatgaggagctagatgccatgatgaaggaagccagcggtcccatcaacttc 332
||||||||||| |||||||| || |||||| ||||||| ||| ||| ||||||||||||
Sbjct: 8734338 aatgtgaagaacgaggagctggaagccatggtgaaggaggcccccgggcccatcaacttc 8734279
Query: 333 actgtcttcctgaccatgtttggggagaagct 364
|| ||||| ||||||||||| |||||||||||
Sbjct: 8734278 acggtctttctgaccatgttcggggagaagct 8734247
Score = 95.6 bits (48), Expect = 3e-17
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 273 aatgtgaagaatgaggagctagatgccatgatgaaggaagccagcggtcccatcaacttc 332
||||||||||| |||||||| || |||||| ||||||| ||| ||| ||||||||||||
Sbjct: 8859953 aatgtgaagaacgaggagctggaagccatggtgaaggaggcccccgggcccatcaacttc 8860012
Query: 333 actgtcttcctgaccatgtttggggagaagct 364
|| ||||| ||||||||||| |||||||||||
Sbjct: 8860013 acggtctttctgaccatgttcggggagaagct 8860044
Score = 85.7 bits (43), Expect = 3e-14
Identities = 46/47 (97%)
Strand = Plus / Minus
Query: 135 agctccaacgtcttctccatgttcgatcagactcagatccaggagtt 181
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8735873 agctccaacgtcttctccatgttcgatcagtctcagatccaggagtt 8735827
Score = 85.7 bits (43), Expect = 3e-14
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 135 agctccaacgtcttctccatgttcgatcagactcagatccaggagtt 181
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8858418 agctccaacgtcttctccatgttcgatcagtctcagatccaggagtt 8858464
>Sscrofa_Chr17
|| Length = 69701581
Score = 75.8 bits (38), Expect = 3e-11
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 138 tccaacgtcttctccatgttcgatcagactcagatccaggagttcaaggaggccttcaca 197
||||| |||||| | |||||||| ||| | |||||||||||||| |||||||||||||
Sbjct: 45268187 tccaatgtcttcgcgatgttcgaccagtcccagatccaggagtttaaggaggccttcaac 45268246
Query: 198 gtaattgaccagaaccgtgatggcattattgacaagga 235
| || ||||||||||| |||||| | |||||||||||
Sbjct: 45268247 atgatcgaccagaaccgagatggcttcattgacaagga 45268284
>Sscrofa_Chr18
|| Length = 61220071
Score = 63.9 bits (32), Expect = 1e-07
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 285 gaggagctagatgccatgatgaaggaagccagcggtcccatcaacttcactgtcttcctg 344
|||||||| ||||||||| || |||||| | || |||||||||||||| ||||||||
Sbjct: 55921199 gaggagctggatgccatgctgcaggaagggaaggggcccatcaacttcaccgtcttcctc 55921258
Query: 345 accatgtttggggagaagctcaaaggtg 372
|| |||| |||||||||||||| ||||
Sbjct: 55921259 acgttgttcggggagaagctcaacggtg 55921286
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 19,328,527
Number of extensions: 454
Number of successful extensions: 454
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 13
Length of query: 726
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 705
Effective length of database: 2,808,413,156
Effective search space: 1979931274980
Effective search space used: 1979931274980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)