Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007316
(993 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur ... 614 e-178
>ref|NP_001068605.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Bos taurus].
Length = 463
Score = 614 bits (1583), Expect(2) = e-178
Identities = 292/301 (97%), Positives = 297/301 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRALC LRG AAQVLRPGAG RLPIQPSRGARQWQPDVEWAEQ+GGAVMYPTKETAH
Sbjct: 1 MAALRALCRLRGAAAQVLRPGAGVRLPIQPSRGARQWQPDVEWAEQYGGAVMYPTKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY+RPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQW 928
+DDIYEFSKNFS RIDELEEMLTNNRIWRNRTVDIG+VTAEDALNYGF+GVMLRGSGIQW
Sbjct: 241 MDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQW 300
Query: 929 D 931
D
Sbjct: 301 D 301
Score = 29.6 bits (65), Expect(2) = e-178
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQVEF+
Sbjct: 304 KTQPYDVYDQVEFD 317
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,169,232
Number of extensions: 1336376
Number of successful extensions: 5010
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5003
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007316
(993 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536138.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 604 e-174
Alignment gi|XP_860254.1| PREDICTED: similar to NADH-ubiquinone oxidoredu... 572 e-165
>ref|XP_536138.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase 49 kDa
subunit, mitochondrial precursor (Complex I-49KD)
(CI-49KD) isoform 2 [Canis familiaris].
Length = 463
Score = 604 bits (1557), Expect(2) = e-174
Identities = 287/301 (95%), Positives = 295/301 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRAL SLRG AAQ LR GAG RLP+QPSRGARQWQPDVEWAEQFGGAVMYPTKETAH
Sbjct: 1 MAALRALRSLRGAAAQALRSGAGGRLPLQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V+NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY+RPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQW 928
+DDIYEFSKNFS R+DELEEMLTNNRIW+NRTVDIGVVTAEDALNYGF+GVMLRGSGIQW
Sbjct: 241 MDDIYEFSKNFSLRVDELEEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 300
Query: 929 D 931
D
Sbjct: 301 D 301
Score = 28.5 bits (62), Expect(2) = e-174
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQV+F+
Sbjct: 304 KTQPYDVYDQVDFD 317
>ref|XP_860254.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 49 kDa
subunit, mitochondrial precursor (Complex I-49KD)
(CI-49KD) isoform 4 [Canis familiaris].
Length = 451
Score = 572 bits (1473), Expect(2) = e-165
Identities = 276/301 (91%), Positives = 283/301 (94%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRAL SLRG AAQ LR GAG RLP+QPSRGARQWQPDVEWAEQFGGAVMYPTKETAH
Sbjct: 1 MAALRALRSLRGAAAQALRSGAGGRLPLQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V+NLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTMVTNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAY+RPGGVHQ
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQ------ 234
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQW 928
FSKNFS R+DELEEMLTNNRIW+NRTVDIGVVTAEDALNYGF+GVMLRGSGIQW
Sbjct: 235 ------FSKNFSLRVDELEEMLTNNRIWKNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 288
Query: 929 D 931
D
Sbjct: 289 D 289
Score = 28.5 bits (62), Expect(2) = e-165
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQV+F+
Sbjct: 292 KTQPYDVYDQVDFD 305
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,036,930
Number of extensions: 1370747
Number of successful extensions: 5321
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5305
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007316
(993 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 600 e-174
Alignment gi|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur ... 600 e-174
>ref|NP_004541.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 1 precursor [Homo sapiens].
Length = 463
Score = 600 bits (1548), Expect(2) = e-174
Identities = 281/301 (93%), Positives = 295/301 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRALC RGVAAQVLRPGAG RLPIQPSRG RQWQPDVEWA+QFGGAVMYP+KETAH
Sbjct: 1 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V N+TLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNI+PPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALD+GAMTPFFW+FEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQW 928
+DDIY+FSKNFS R+DELEE+LTNNRIWRNRT+DIGVVTAE+ALNYGF+GVMLRGSGIQW
Sbjct: 241 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 300
Query: 929 D 931
D
Sbjct: 301 D 301
Score = 29.6 bits (65), Expect(2) = e-174
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQVEF+
Sbjct: 304 KTQPYDVYDQVEFD 317
>ref|NP_001159631.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial isoform 2 precursor [Homo sapiens].
Length = 457
Score = 600 bits (1548), Expect(2) = e-174
Identities = 281/301 (93%), Positives = 295/301 (98%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRALC RGVAAQVLRPGAG RLPIQPSRG RQWQPDVEWA+QFGGAVMYP+KETAH
Sbjct: 1 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVDPPKDT+V N+TLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNI+PPPRAQWIRVLFGEITRL
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALD+GAMTPFFW+FEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQW 928
+DDIY+FSKNFS R+DELEE+LTNNRIWRNRT+DIGVVTAE+ALNYGF+GVMLRGSGIQW
Sbjct: 241 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW 300
Query: 929 D 931
D
Sbjct: 301 D 301
Score = 29.6 bits (65), Expect(2) = e-174
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQVEF+
Sbjct: 304 KTQPYDVYDQVEFD 317
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,149,974
Number of extensions: 1349244
Number of successful extensions: 4609
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4598
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007316
(993 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur pro... 582 e-168
>ref|NP_694704.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial precursor [Mus musculus].
Length = 463
Score = 582 bits (1501), Expect(2) = e-168
Identities = 278/301 (92%), Positives = 289/301 (96%)
Frame = +2
Query: 29 MAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYPTKETAH 208
MAALRAL LRGV A VLRPG+G RLP QPSRGARQWQPD+EWAEQF GAVMYP+KETAH
Sbjct: 1 MAALRALRCLRGVGAPVLRPGSGIRLPSQPSRGARQWQPDIEWAEQFSGAVMYPSKETAH 60
Query: 209 WKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT 388
WKPPPWNDVD K+ V+N+TLNFGPQHPAAHGVLRLV+ELSGEMVRKCDPHIGLLHRGT
Sbjct: 61 WKPPPWNDVDILKEKAVTNMTLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGT 120
Query: 389 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRL 568
EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYS+AVEKLLNIQPPPRAQWIRVLFGEITR+
Sbjct: 121 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLNIQPPPRAQWIRVLFGEITRI 180
Query: 569 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 748
LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
Sbjct: 181 LNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL 240
Query: 749 LDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQW 928
LDDIYEFSKNFS RIDE+EEMLTNNRIWRNRTVDIGVVTAEDALNYGF+GVMLRGSGIQW
Sbjct: 241 LDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQW 300
Query: 929 D 931
D
Sbjct: 301 D 301
Score = 29.6 bits (65), Expect(2) = e-168
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQVEF+
Sbjct: 304 KTQPYDVYDQVEFD 317
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,042,387
Number of extensions: 1121863
Number of successful extensions: 3894
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3880
Number of HSP's successfully gapped: 2
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007316
(993 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] i... 637 0.0
Alignment gi|XP_003355143.1| PREDICTED: NADH dehydrogenase [ubiquinone] i... 350 5e-99
>ref|XP_001927701.2| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial [Sus scrofa].
Length = 473
Score = 637 bits (1644), Expect(2) = 0.0
Identities = 306/307 (99%), Positives = 307/307 (100%)
Frame = +2
Query: 11 SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYP 190
SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYP
Sbjct: 5 SLWRGKMAALRALCSLRGVAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQFGGAVMYP 64
Query: 191 TKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIG 370
TKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIG
Sbjct: 65 TKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIG 124
Query: 371 LLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLF 550
LLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLF
Sbjct: 125 LLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLF 184
Query: 551 GEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQ 730
GEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQ
Sbjct: 185 GEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQ 244
Query: 731 DLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLR 910
DLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGF+GVMLR
Sbjct: 245 DLPLGLLDDIYEFSKNFSFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLR 304
Query: 911 GSGIQWD 931
GSGIQWD
Sbjct: 305 GSGIQWD 311
Score = 29.6 bits (65), Expect(2) = 0.0
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQVEF+
Sbjct: 314 KTQPYDVYDQVEFD 327
>ref|XP_003355143.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 2,
mitochondrial-like [Sus scrofa].
Length = 334
Score = 350 bits (898), Expect(2) = 5e-99
Identities = 169/170 (99%), Positives = 170/170 (100%)
Frame = +2
Query: 422 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHA 601
ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHA
Sbjct: 3 ALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHA 62
Query: 602 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 781
LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF
Sbjct: 63 LDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLLDDIYEFSKNF 122
Query: 782 SFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFNGVMLRGSGIQWD 931
SFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGF+GVMLRGSGIQWD
Sbjct: 123 SFRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWD 172
Score = 29.6 bits (65), Expect(2) = 5e-99
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +3
Query: 939 RTPPYDVYDQVEFE 980
+T PYDVYDQVEF+
Sbjct: 175 KTQPYDVYDQVEFD 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,492,116
Number of extensions: 857028
Number of successful extensions: 3185
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3178
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007316
(993 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 383 e-103
>Sscrofa_Chr04
|| Length = 143465943
Score = 383 bits (193), Expect = e-103
Identities = 193/193 (100%)
Strand = Plus / Minus
Query: 230 gatgtggaccctccaaaggacacattggtgtcgaacctaaccctgaactttgggccccag 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97109944 gatgtggaccctccaaaggacacattggtgtcgaacctaaccctgaactttgggccccag 97109885
Query: 290 cacccagcagcccatggagtcctgcggctagtgatggaactgagtggggagatggtgcgg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97109884 cacccagcagcccatggagtcctgcggctagtgatggaactgagtggggagatggtgcgg 97109825
Query: 350 aagtgcgatcctcacattgggctgctgcaccgaggcactgagaagctcattgaatacaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97109824 aagtgcgatcctcacattgggctgctgcaccgaggcactgagaagctcattgaatacaag 97109765
Query: 410 acctatctgcagg 422
|||||||||||||
Sbjct: 97109764 acctatctgcagg 97109752
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 419 caggcccttccatactttgaccggctagactatgtgtccatgatgtgtaacgaacaggcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107948 caggcccttccatactttgaccggctagactatgtgtccatgatgtgtaacgaacaggcc 97107889
Query: 479 tattcactggcggtggagaagttgctcaacatccagcctcctcctcgggcacagtggatc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107888 tattcactggcggtggagaagttgctcaacatccagcctcctcctcgggcacagtggatc 97107829
Query: 539 cgag 542
||||
Sbjct: 97107828 cgag 97107825
Score = 230 bits (116), Expect = 1e-57
Identities = 119/120 (99%)
Strand = Plus / Minus
Query: 4 tttccgcagtctgtggcggggcaagatggcggcgctcagagcactgtgcagcctccgggg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97113748 tttccgcagtctgtggcggggcaagatggcggcgctcagagcactgtgcagcctccgggg 97113689
Query: 64 cgtcgcggcccaggtgctgcggcccggggctggggcccgactgccgattcagcctagcag 123
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 97113688 cgtcgcggcccaggtgctgcggcccggggctggggcccgactaccgattcagcctagcag 97113629
Score = 228 bits (115), Expect = 5e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 541 agtgctctttggagaaatcacacgacttttgaaccacatcatggctgtgaccacacatgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107639 agtgctctttggagaaatcacacgacttttgaaccacatcatggctgtgaccacacatgc 97107580
Query: 601 cctggatatcggggccatgacacctttcttctggatgtttgaagaaagggagaag 655
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107579 cctggatatcggggccatgacacctttcttctggatgtttgaagaaagggagaag 97107525
Score = 218 bits (110), Expect = 4e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 121 cagaggggctcggcaatggcagccagatgtggaatgggcagagcagtttgggggagctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97112839 cagaggggctcggcaatggcagccagatgtggaatgggcagagcagtttgggggagctgt 97112780
Query: 181 catgtaccccactaaggaaacagcccactggaaacctccaccttggaatg 230
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97112779 catgtaccccactaaggaaacagcccactggaaacctccaccttggaatg 97112730
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 807 agatgctgaccaacaataggatctggcgaaatcggacagtcgacattggggttgtcacag 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97106816 agatgctgaccaacaataggatctggcgaaatcggacagtcgacattggggttgtcacag 97106757
Query: 867 cggaagacgcacttaactatggtttta 893
|||||||||||||||||||||||||||
Sbjct: 97106756 cggaagacgcacttaactatggtttta 97106730
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 729 aggacctaccccttgggcttctggatgacatttatgagttttctaagaacttctcttttc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107025 aggacctaccccttgggcttctggatgacatttatgagttttctaagaacttctcttttc 97106966
Query: 789 ggattgatgagttggaggag 808
||||||||||||||||||||
Sbjct: 97106965 ggattgatgagttggaggag 97106946
Score = 155 bits (78), Expect = 6e-35
Identities = 78/78 (100%)
Strand = Plus / Minus
Query: 654 agatgttcgagttctatgagcgagtgtccggagctcgcatgcatgctgcttacatccggc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97107278 agatgttcgagttctatgagcgagtgtccggagctcgcatgcatgctgcttacatccggc 97107219
Query: 714 caggaggcgtgcaccagg 731
||||||||||||||||||
Sbjct: 97107218 caggaggcgtgcaccagg 97107201
Score = 97.6 bits (49), Expect = 1e-17
Identities = 75/85 (88%), Gaps = 1/85 (1%)
Strand = Plus / Minus
Query: 895 tggggtgatgctccggggttcaggcatccagtgggacctgcggaagaannnnnnnntatg 954
|||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 97106525 tggggtgatgctccggggttcaggcatccagtgggacctgcggaag-acccagccctatg 97106467
Query: 955 acgtttatgaccaggtggaatttga 979
||||||||||||||||||| |||||
Sbjct: 97106466 acgtttatgaccaggtggagtttga 97106442
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,914,137
Number of extensions: 161
Number of successful extensions: 161
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 9
Length of query: 993
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 972
Effective length of database: 2,808,413,156
Effective search space: 2729777587632
Effective search space used: 2729777587632
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)