Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007319
(1077 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030411.1| sodium/potassium-transporting ATPase subunit... 215 6e-56
Alignment gi|NP_001030470.1| sodium/potassium-transporting ATPase subunit... 94 5e-26
Alignment gi|NP_777102.1| sodium/potassium-transporting ATPase subunit be... 114 1e-25
Alignment gi|NP_001193069.1| potassium-transporting ATPase subunit beta [... 81 5e-20
Alignment gi|XP_002692046.1| PREDICTED: hydrogen/potassium-exchanging ATP... 81 5e-20
Alignment gi|NP_001095389.1| protein ATP1B4 [Bos taurus]. 94 2e-19
>ref|NP_001030411.1| sodium/potassium-transporting ATPase subunit beta-1 [Bos taurus].
Length = 133
Score = 215 bits (547), Expect = 6e-56
Identities = 105/123 (85%), Positives = 112/123 (91%)
Frame = +1
Query: 505 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 684
MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT
Sbjct: 1 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 60
Query: 685 ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
ISEFKPTYQDRVAPPGLTQIPQ QKTEI+FRPNDP+SY +YV +I FL+KY L D
Sbjct: 61 ISEFKPTYQDRVAPPGLTQIPQIQKTEIAFRPNDPKSYMTYVDNIDNFLKKYSALV---D 117
Query: 865 MIF 873
++F
Sbjct: 118 LVF 120
>ref|NP_001030470.1| sodium/potassium-transporting ATPase subunit beta-3 [Bos taurus].
Length = 279
Score = 94.4 bits (233), Expect(2) = 5e-26
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
WK FI+N EFLGRT SW ILLFY++FYG LA +F T+ ML T+++ P Y+D+
Sbjct: 16 WKLFIYNRTTGEFLGRTAKSWGLILLFYLVFYGFLAALFSFTMWAMLQTLNDEVPKYRDQ 75
Query: 718 VAPPGLTQIPQS-QKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVP 894
+ PGL P+ + SF +D +SY+ Y+ + +FL+ Y QK+ DC N
Sbjct: 76 IPSPGLMVFPKPVSALDFSFSLSDAESYQGYIDDLKKFLKPYGLEEQKN---LTDCTN-- 130
Query: 895 SELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
C+F L L CSG+
Sbjct: 131 -----GTFFEQKGPEYTACQFPLALLEACSGV 157
Score = 42.4 bits (98), Expect(2) = 5e-26
Identities = 12/28 (42%), Positives = 24/28 (85%)
Frame = +3
Query: 987 INDETYGYKDGKPCVIIKSNQVLGFNPK 1070
++D T+GY++GKPC+++K N+++G P+
Sbjct: 157 VDDPTFGYQEGKPCILVKMNRIIGLKPQ 184
>ref|NP_777102.1| sodium/potassium-transporting ATPase subunit beta-2 [Bos taurus].
Length = 290
Score = 114 bits (285), Expect = 1e-25
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE WK+F+WN +F+GRTG SW ILLFY++FYG L +F T+ VML T+S+
Sbjct: 11 GQVVEE--WKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVMLQTVSD 68
Query: 694 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKD--LAQKDDM 867
P YQDR+A PGL P+++ ++ +D +S++ +V + +FLE Y D AQK+D+
Sbjct: 69 HTPKYQDRLATPGLMIRPKTENLDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQAQKNDV 128
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
P + C+F LG+CSG+
Sbjct: 129 C------RPGRYYEQPDNGVLNYPKRACQFNRTQLGDCSGI 163
>ref|NP_001193069.1| potassium-transporting ATPase subunit beta [Bos taurus].
Length = 290
Score = 81.3 bits (199), Expect(2) = 5e-20
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE ++++ WN + + LGRT W I L+YV FY + GIF I V++ TI
Sbjct: 11 GQRMEE--FRRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGIFALCIYVLMCTIDP 68
Query: 694 FKPTYQDRVAPPGLTQIPQS---QKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
+ P YQD++ PG+T P + + +IS+ +D +++ ++ FL Y AQ+D+
Sbjct: 69 YTPDYQDQLKSPGVTLRPDTYGDKGLDISYNVSDNRTWTGLTQALRHFLAGYSPAAQEDN 128
Query: 865 MIFEDCGNVPSELKXXXXXXXXXXXXKV-CRFRLEWLGNCSG 987
+ N SE K C+F + L NCSG
Sbjct: 129 I------NCTSERYFFQERFLAPNHTKFSCKFTADMLQNCSG 164
Score = 35.4 bits (80), Expect(2) = 5e-20
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 993 DETYGYKDGKPCVIIKSNQVLGFNP 1067
D T+G+ +GKPC IIK N+++ F P
Sbjct: 167 DPTFGFAEGKPCFIIKMNRIVKFLP 191
>ref|XP_002692046.1| PREDICTED: hydrogen/potassium-exchanging ATPase 4B-like [Bos
taurus].
Length = 290
Score = 81.3 bits (199), Expect(2) = 5e-20
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 4/162 (2%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE ++++ WN + + LGRT W I L+YV FY + GIF I V++ TI
Sbjct: 11 GQRMEE--FRRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGIFALCIYVLMCTIDP 68
Query: 694 FKPTYQDRVAPPGLTQIPQS---QKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
+ P YQD++ PG+T P + + +IS+ +D +++ ++ FL Y AQ+D+
Sbjct: 69 YTPDYQDQLKSPGVTLRPDTYGDKGLDISYNVSDNRTWTGLTQALRHFLAGYSPAAQEDN 128
Query: 865 MIFEDCGNVPSELKXXXXXXXXXXXXKV-CRFRLEWLGNCSG 987
+ N SE K C+F + L NCSG
Sbjct: 129 I------NCTSERYFFQERFLAPNHTKFSCKFTADMLQNCSG 164
Score = 35.4 bits (80), Expect(2) = 5e-20
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 993 DETYGYKDGKPCVIIKSNQVLGFNP 1067
D T+G+ +GKPC IIK N+++ F P
Sbjct: 167 DPTFGFAEGKPCFIIKMNRIVKFLP 191
>ref|NP_001095389.1| protein ATP1B4 [Bos taurus].
Length = 355
Score = 94.4 bits (233), Expect = 2e-19
Identities = 50/149 (33%), Positives = 80/149 (53%)
Frame = +1
Query: 544 KFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA 723
+++W+ EK+ L RTG SW IL+ Y FY LA + + + LTIS + PT+ +RV
Sbjct: 89 EYLWDPEKRTSLARTGQSWSLILVIYFFFYASLAAVITLCMYTLFLTISPYMPTFTERVK 148
Query: 724 PPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSEL 903
PPG+ P + +F ++P +++ YV+S+ FL+ Y D Q++ + DC P +
Sbjct: 149 PPGVMIRPFAHSLNFNFNVSEPDTWQHYVISLNGFLQGYNDSLQEEMNV--DC--PPGQ- 203
Query: 904 KXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
K C+F+ +L NCSGL
Sbjct: 204 -YFIQDGDEDEDKKACQFKRSFLKNCSGL 231
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,737,763
Number of extensions: 1005874
Number of successful extensions: 2722
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 9
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007319
(1077 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003283.1| sodium/potassium-transporting ATPase subunit... 291 7e-79
Alignment gi|XP_534292.2| PREDICTED: similar to Sodium/potassium-transpor... 100 6e-26
Alignment gi|XP_546597.2| PREDICTED: similar to Na+/K+ -ATPase beta 2 sub... 114 2e-25
Alignment gi|NP_001003328.1| potassium-transporting ATPase subunit beta [... 82 7e-16
Alignment gi|XP_538158.2| PREDICTED: similar to ATPase, (Na+)/K+ transpor... 82 9e-16
>ref|NP_001003283.1| sodium/potassium-transporting ATPase subunit beta-1 [Canis lupus
familiaris].
Length = 303
Score = 291 bits (745), Expect = 7e-79
Identities = 139/162 (85%), Positives = 146/162 (90%)
Frame = +1
Query: 505 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 684
MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT
Sbjct: 1 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 60
Query: 685 ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
ISEFKPTYQDRVAPPGLTQIPQ QKTEISFRPNDP+SYE YV +IVRFLEKYKD AQKD+
Sbjct: 61 ISEFKPTYQDRVAPPGLTQIPQIQKTEISFRPNDPKSYEEYVRNIVRFLEKYKDSAQKDE 120
Query: 865 MIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
MIFEDCGN+PSE+K KVCRF+LEWLGNCSG+
Sbjct: 121 MIFEDCGNMPSEIKERGEFNNERGERKVCRFKLEWLGNCSGI 162
Score = 62.4 bits (150), Expect = 7e-10
Identities = 27/45 (60%), Positives = 33/45 (73%)
Frame = +3
Query: 942 KSVQVQARMVGKLLWINDETYGYKDGKPCVIIKSNQVLGFNPKPP 1076
K + + +G INDETYGY+DGKPCV+IK N+VLGF PKPP
Sbjct: 147 KVCRFKLEWLGNCSGINDETYGYRDGKPCVLIKLNRVLGFKPKPP 191
>ref|XP_534292.2| PREDICTED: similar to Sodium/potassium-transporting ATPase beta-3
chain (Sodium/potassium-dependent ATPase beta-3 subunit)
(ATPB-3) [Canis familiaris].
Length = 269
Score = 100 bits (248), Expect(2) = 6e-26
Identities = 61/157 (38%), Positives = 84/157 (53%), Gaps = 7/157 (4%)
Frame = +1
Query: 541 KKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRV 720
K FI+N EFLGRT SW ILLFY++FYG LA +F T+ ML T+++ P Y+D++
Sbjct: 6 KLFIYNPTTGEFLGRTAKSWGLILLFYLVFYGFLAALFSFTMWAMLQTLNDEVPKYRDQI 65
Query: 721 APPGLTQIPQS-QKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQK------DDMIFED 879
PGLT P+ E SF +DP+SY+ Y+ + +FL+ Y+ QK D +FE
Sbjct: 66 PSPGLTVFPKPVTALEYSFTVSDPESYKGYIEDLRKFLKPYESEEQKNLTACSDGALFEQ 125
Query: 880 CGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
G V S C+F L L CSG+
Sbjct: 126 KGPVYS----------------ACQFPLPLLQACSGV 146
Score = 36.6 bits (83), Expect(2) = 6e-26
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 987 INDETYGYKDGKPCVIIKSNQVLGFNPK 1070
++D +GY G PCV++K N+++G P+
Sbjct: 146 VDDPDFGYSRGSPCVLVKMNRIIGLKPQ 173
>ref|XP_546597.2| PREDICTED: similar to Na+/K+ -ATPase beta 2 subunit [Canis
familiaris].
Length = 290
Score = 114 bits (285), Expect = 2e-25
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE WK+F+WN +F+GRTG SW ILLFY++FYG L +F T+ VML T+S+
Sbjct: 11 GQVVEE--WKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVMLQTVSD 68
Query: 694 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKD--LAQKDDM 867
P YQDR+A PGL P+++ ++ +D +S++ +V + +FLE Y D AQK+D+
Sbjct: 69 HTPKYQDRLATPGLMIRPKTENLDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQAQKNDV 128
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
P + C+F LG+CSG+
Sbjct: 129 C------RPGRYYEQPDNGVLNYPKRACQFNRTQLGDCSGI 163
>ref|NP_001003328.1| potassium-transporting ATPase subunit beta [Canis lupus
familiaris].
Length = 290
Score = 82.4 bits (202), Expect = 7e-16
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
++++ WN + + LGRT W I L+YV FY + GIF I ++ T+ + P YQD+
Sbjct: 17 FQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGIFALCIYTLMCTLDPYTPDYQDQ 76
Query: 718 VAPPGLTQIPQ---SQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDM------- 867
+ PG+T P + +IS+ +D +++ V + FLE Y +Q+D++
Sbjct: 77 LKSPGVTLRPDVYGEKGLDISYNVSDNRTWVDLVNILHNFLEGYSPTSQEDNINCTSEKY 136
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
F+D P+ K C+F + L NCSGL
Sbjct: 137 FFQDVFGAPNHTKFS------------CKFMADMLQNCSGL 165
>ref|XP_538158.2| PREDICTED: similar to ATPase, (Na+)/K+ transporting, beta 4
polypeptide [Canis familiaris].
Length = 362
Score = 82.0 bits (201), Expect = 9e-16
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Frame = +1
Query: 511 RGKAKEEGS--WKK------FIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTI 666
+G+ + G+ W+K ++W+ EK+ L RTG IL+ Y FY LA + +
Sbjct: 81 KGQGQPTGNAWWQKWQIVNEYLWDPEKRMSLARTG----LILVIYFFFYASLAAVITLCM 136
Query: 667 QVMLLTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKD 846
+ LTIS + P + +RV PPG+ P + +F ++P +++ YV+S+ FL+ Y D
Sbjct: 137 YTLFLTISPYMPPFTERVKPPGVMIRPFAHSLNFNFNVSEPDTWQHYVISLNGFLQGYND 196
Query: 847 LAQKDDMIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
Q++ + DC P + K C+F+ +L NCSGL
Sbjct: 197 SLQEEMNV--DC--PPGQ--YFIQDGDEDEDKKACQFKRSFLKNCSGL 238
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 40,046,545
Number of extensions: 971746
Number of successful extensions: 2888
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2880
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007319
(1077 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001668.1| sodium/potassium-transporting ATPase subunit be... 292 3e-79
Alignment gi|NP_001669.3| sodium/potassium-transporting ATPase subunit be... 116 4e-26
Alignment gi|NP_001670.1| sodium/potassium-transporting ATPase subunit be... 99 7e-21
Alignment gi|NP_001135919.1| protein ATP1B4 isoform A [Homo sapiens]. 97 3e-20
Alignment gi|NP_036201.1| protein ATP1B4 isoform B [Homo sapiens]. 87 3e-17
Alignment gi|NP_000696.1| potassium-transporting ATPase subunit beta [Hom... 79 7e-15
>ref|NP_001668.1| sodium/potassium-transporting ATPase subunit beta-1 [Homo sapiens].
Length = 303
Score = 292 bits (748), Expect = 3e-79
Identities = 142/174 (81%), Positives = 150/174 (86%)
Frame = +1
Query: 505 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 684
MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT
Sbjct: 1 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 60
Query: 685 ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
ISEFKPTYQDRVAPPGLTQIPQ QKTEISFRPNDP+SYE+YV++IVRFLEKYKD AQ+DD
Sbjct: 61 ISEFKPTYQDRVAPPGLTQIPQIQKTEISFRPNDPKSYEAYVLNIVRFLEKYKDSAQRDD 120
Query: 865 MIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGLMMKPMATKMANP 1026
MIFEDCG+VPSE K KVCRF+LEWLGNCSGL + K P
Sbjct: 121 MIFEDCGDVPSEPKERGDFNHERGERKVCRFKLEWLGNCSGLNDETYGYKEGKP 174
Score = 61.6 bits (148), Expect = 1e-09
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +3
Query: 942 KSVQVQARMVGKLLWINDETYGYKDGKPCVIIKSNQVLGFNPKPP 1076
K + + +G +NDETYGYK+GKPC+IIK N+VLGF PKPP
Sbjct: 147 KVCRFKLEWLGNCSGLNDETYGYKEGKPCIIIKLNRVLGFKPKPP 191
>ref|NP_001669.3| sodium/potassium-transporting ATPase subunit beta-2 [Homo sapiens].
Length = 290
Score = 116 bits (290), Expect = 4e-26
Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE WK+F+WN +F+GRTG SW ILLFY++FYG L +F T+ VML T+S+
Sbjct: 11 GQVVEE--WKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVMLQTVSD 68
Query: 694 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKD--LAQKDDM 867
P YQDR+A PGL P+++ ++ +D +S++ +V + +FLE Y D AQK+D+
Sbjct: 69 HTPKYQDRLATPGLMIRPKTENLDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQAQKNDV 128
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
P + C+F LGNCSG+
Sbjct: 129 C------RPGRYYEQPDNGVLNYPKRACQFNRTQLGNCSGI 163
>ref|NP_001670.1| sodium/potassium-transporting ATPase subunit beta-3 [Homo sapiens].
Length = 279
Score = 99.0 bits (245), Expect = 7e-21
Identities = 62/173 (35%), Positives = 84/173 (48%), Gaps = 7/173 (4%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
WK FI+N EFLGRT SW ILLFY++FYG LA +F T+ VML T+++ P Y+D+
Sbjct: 16 WKLFIYNPTTGEFLGRTAKSWGLILLFYLVFYGFLAALFSFTMWVMLQTLNDEVPKYRDQ 75
Query: 718 VAPPGLTQIPQS-QKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQK------DDMIFE 876
+ PGL P+ E +F +DP SY Y+ + +FL+ Y QK D +FE
Sbjct: 76 IPSPGLMVFPKPVTALEYTFSRSDPTSYAGYIEDLKKFLKPYTLEEQKNLTVCPDGALFE 135
Query: 877 DCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGLMMKPMATKMANPVSL 1035
G V C+F + L CSG+ NP L
Sbjct: 136 QKGPV----------------YVACQFPISLLQACSGMNDPDFGYSQGNPCIL 172
>ref|NP_001135919.1| protein ATP1B4 isoform A [Homo sapiens].
Length = 357
Score = 96.7 bits (239), Expect = 3e-20
Identities = 57/172 (33%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Frame = +1
Query: 517 KAKEEGS--------WKK------FIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIF 654
K +EEG W+K ++W+ E++ FL RTG SW ILL Y FY LA +
Sbjct: 68 KEEEEGQGQPTGNAWWQKLQIMSEYLWDPERRMFLARTGQSWSLILLIYFFFYASLAAVI 127
Query: 655 IGTIQVMLLTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLE 834
+ + LTIS + PT+ +RV PPG+ P + +F ++P +++ YV+S+ FL+
Sbjct: 128 TLCMYTLFLTISPYIPTFTERVKPPGVMIRPFAHSLNFNFNVSEPDTWQHYVISLNGFLQ 187
Query: 835 KYKDLAQKDDMIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
Y D Q++ + DC P + K C+F+ +L NCSGL
Sbjct: 188 GYNDSLQEEMNV--DC--PPGQ--YFIQDGNEDEDKKACQFKRSFLKNCSGL 233
>ref|NP_036201.1| protein ATP1B4 isoform B [Homo sapiens].
Length = 353
Score = 86.7 bits (213), Expect = 3e-17
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 14/172 (8%)
Frame = +1
Query: 517 KAKEEGS--------WKK------FIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIF 654
K +EEG W+K ++W+ E++ FL RTG ILL Y FY LA +
Sbjct: 68 KEEEEGQGQPTGNAWWQKLQIMSEYLWDPERRMFLARTG----LILLIYFFFYASLAAVI 123
Query: 655 IGTIQVMLLTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLE 834
+ + LTIS + PT+ +RV PPG+ P + +F ++P +++ YV+S+ FL+
Sbjct: 124 TLCMYTLFLTISPYIPTFTERVKPPGVMIRPFAHSLNFNFNVSEPDTWQHYVISLNGFLQ 183
Query: 835 KYKDLAQKDDMIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
Y D Q++ + DC P + K C+F+ +L NCSGL
Sbjct: 184 GYNDSLQEEMNV--DC--PPGQ--YFIQDGNEDEDKKACQFKRSFLKNCSGL 229
>ref|NP_000696.1| potassium-transporting ATPase subunit beta [Homo sapiens].
Length = 291
Score = 79.0 bits (193), Expect = 7e-15
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE ++++ WN + + LGRT W I L+YV FY + G+F + V++ T+
Sbjct: 11 GQRMEE--FQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMTGLFALCLYVLMQTVDP 68
Query: 694 FKPTYQDRVAPPGLTQIPQ---SQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
+ P YQD++ PG+T P + EI + +D +++ ++ FL Y AQ+D
Sbjct: 69 YTPDYQDQLRSPGVTLRPDVYGEKGLEIVYNVSDNRTWADLTQTLHAFLAGYSPAAQEDS 128
Query: 865 M-------IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
+ F++ P+ K C+F + L NCSGL
Sbjct: 129 INCTSEQYFFQESFRAPNHTKFS------------CKFTADMLQNCSGL 165
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,224,848
Number of extensions: 948859
Number of successful extensions: 2722
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2716
Number of HSP's successfully gapped: 7
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007319
(1077 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033851.1| sodium/potassium-transporting ATPase subunit be... 291 2e-89
Alignment gi|NP_038201.1| sodium/potassium-transporting ATPase subunit be... 112 6e-25
Alignment gi|NP_031528.1| sodium/potassium-transporting ATPase subunit be... 94 2e-19
Alignment gi|NP_598451.1| protein ATP1B4 [Mus musculus]. 89 6e-18
Alignment gi|NP_033854.1| potassium-transporting ATPase subunit beta [Mus... 74 2e-13
>ref|NP_033851.1| sodium/potassium-transporting ATPase subunit beta-1 [Mus musculus].
Length = 304
Score = 291 bits (744), Expect(2) = 2e-89
Identities = 139/162 (85%), Positives = 146/162 (90%)
Frame = +1
Query: 505 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 684
MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT
Sbjct: 1 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 60
Query: 685 ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
ISE KPTYQDRVAPPGLTQIPQ QKTEISFRPNDP+SYE+YV++I+RFLEKYKD AQKDD
Sbjct: 61 ISELKPTYQDRVAPPGLTQIPQIQKTEISFRPNDPKSYEAYVLNIIRFLEKYKDSAQKDD 120
Query: 865 MIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
MIFEDCGNVPSE K KVCRF+L+WLGNCSGL
Sbjct: 121 MIFEDCGNVPSEPKERGDINHERGERKVCRFKLDWLGNCSGL 162
Score = 57.4 bits (137), Expect(2) = 2e-89
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +3
Query: 969 VGKLLWINDETYGYKDGKPCVIIKSNQVLGFNPKPP 1076
+G +ND++YGY++GKPC+IIK N+VLGF PKPP
Sbjct: 156 LGNCSGLNDDSYGYREGKPCIIIKLNRVLGFKPKPP 191
>ref|NP_038201.1| sodium/potassium-transporting ATPase subunit beta-2 [Mus musculus].
Length = 290
Score = 112 bits (279), Expect = 6e-25
Identities = 61/161 (37%), Positives = 90/161 (55%), Gaps = 2/161 (1%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE WK+F+WN +F+GRTG SW ILLFY++FYG L +F T+ VML T+S+
Sbjct: 11 GQVVEE--WKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFSLTMWVMLQTVSD 68
Query: 694 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKD--LAQKDDM 867
P YQDR+A PGL P+++ ++ +D +S+ +V + +FLE Y D AQK+D+
Sbjct: 69 HTPKYQDRLATPGLMIRPKTENLDVIVNISDTESWGQHVQKLNKFLEPYNDSIQAQKNDV 128
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
P + C+F LG+CSG+
Sbjct: 129 C------RPGRYYEQPDNGVLNYPKRACQFNRTQLGDCSGI 163
>ref|NP_031528.1| sodium/potassium-transporting ATPase subunit beta-3 [Mus musculus].
Length = 278
Score = 94.0 bits (232), Expect = 2e-19
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
WK FI+N EFLGRT SW ILLFY++FYG LA +F T+ ML T+++ P Y+D+
Sbjct: 16 WKLFIYNPSSGEFLGRTSKSWGLILLFYLVFYGFLAALFTFTMWAMLQTLNDEVPKYRDQ 75
Query: 718 VAPPGLTQIPQSQKT-EISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVP 894
+ PGL P+ Q E +F ++PQ+Y+ V + FL+ Y QK+ C +
Sbjct: 76 IPSPGLMVFPKPQTALEYTFSMSEPQTYKKLVEDLESFLKPYSVEEQKN---LTSCPDGA 132
Query: 895 SELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
++ + C+F + L CSG+
Sbjct: 133 PFIQ-------HGPDYRACQFPVSLLEECSGV 157
>ref|NP_598451.1| protein ATP1B4 [Mus musculus].
Length = 356
Score = 89.0 bits (219), Expect = 6e-18
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 8/167 (4%)
Frame = +1
Query: 514 GKAKEEGS--WKK------FIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQ 669
G+ + GS W+K ++W+ EK+ L RTG S IL+ Y FY LA + I
Sbjct: 72 GQGQSTGSAWWRKLQIVNEYLWDPEKRMSLARTGQSRSLILVIYFFFYASLAAVITLFIY 131
Query: 670 VMLLTISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDL 849
++ L IS + PT+ ++V PPG+ P + +F ++P++++ YV+S+ FL+ Y D
Sbjct: 132 MLFLAISPYMPTFTEQVKPPGVMIRPFAHSLNFNFNVSEPETWQRYVISLNGFLQGYNDS 191
Query: 850 AQKDDMIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
Q++ I DC + K C+F+ +L NCSGL
Sbjct: 192 LQEEMNI--DC----PPGRYFIQDGDEDEDKKACQFKRSFLKNCSGL 232
>ref|NP_033854.1| potassium-transporting ATPase subunit beta [Mus musculus].
Length = 294
Score = 73.9 bits (180), Expect = 2e-13
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 10/161 (6%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
++ + WN + + LGRT W I L+Y FY + G+F I V++ TI + P YQD+
Sbjct: 17 FRHYCWNPDTGQMLGRTPARWVWISLYYAGFYVVMTGLFALCIYVLMQTIDPYTPDYQDQ 76
Query: 718 VAPPGLTQIPQ---SQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDM------- 867
+ PG+T P + +IS+ ++ S+ ++ FL Y +Q+D +
Sbjct: 77 LKSPGVTLRPDVYGERGLKISYNVSENSSWAGLTHTLHSFLAGYTPASQQDSINCTSEKY 136
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
F++ P+ K C+F + L NCSGL
Sbjct: 137 FFQESFAAPNHTKFS------------CKFTADMLQNCSGL 165
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,143,218
Number of extensions: 794293
Number of successful extensions: 2214
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2210
Number of HSP's successfully gapped: 6
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007319
(1077 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001542.1| sodium/potassium-transporting ATPase subunit... 301 4e-82
Alignment gi|XP_003361553.1| PREDICTED: sodium/potassium-transporting ATP... 296 1e-80
Alignment gi|XP_003131993.1| PREDICTED: sodium/potassium-transporting ATP... 116 2e-26
Alignment gi|XP_003357955.1| PREDICTED: potassium-transporting ATPase sub... 78 3e-19
Alignment gi|NP_001001258.1| potassium-transporting ATPase subunit beta [... 78 3e-19
Alignment gi|NP_999297.1| protein ATP1B4 [Sus scrofa]. 88 9e-18
Alignment gi|XP_003132498.2| PREDICTED: sodium/potassium-transporting ATP... 72 5e-13
>ref|NP_001001542.1| sodium/potassium-transporting ATPase subunit beta-1 [Sus scrofa].
Length = 303
Score = 301 bits (771), Expect = 4e-82
Identities = 149/174 (85%), Positives = 151/174 (86%)
Frame = +1
Query: 505 MARGKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 684
MARGKAKEEGSWKK +WNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT
Sbjct: 1 MARGKAKEEGSWKKLMWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLT 60
Query: 685 ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 864
ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD
Sbjct: 61 ISEFKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDD 120
Query: 865 MIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGLMMKPMATKMANP 1026
MIFEDCGNVPSELK KVCRFRLEWLGN SGL + K P
Sbjct: 121 MIFEDCGNVPSELKERGEYNNERGERKVCRFRLEWLGNSSGLNDETYGYKDGKP 174
Score = 63.2 bits (152), Expect = 2e-10
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +3
Query: 942 KSVQVQARMVGKLLWINDETYGYKDGKPCVIIKSNQVLGFNPKPP 1076
K + + +G +NDETYGYKDGKPCVIIK N+VLGF PKPP
Sbjct: 147 KVCRFRLEWLGNSSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPP 191
>ref|XP_003361553.1| PREDICTED: sodium/potassium-transporting ATPase subunit beta-1-like
[Sus scrofa].
Length = 405
Score = 296 bits (758), Expect = 1e-80
Identities = 146/171 (85%), Positives = 147/171 (85%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G EEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE
Sbjct: 105 GWGXEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 164
Query: 694 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIF 873
FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIF
Sbjct: 165 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIF 224
Query: 874 EDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGLMMKPMATKMANP 1026
EDCGNVPSELK KVCRFRLEWLGNCSGL + K P
Sbjct: 225 EDCGNVPSELKERGEYNNERGERKVCRFRLEWLGNCSGLNDETYGYKDGKP 275
Score = 63.5 bits (153), Expect = 2e-10
Identities = 28/45 (62%), Positives = 33/45 (73%)
Frame = +3
Query: 942 KSVQVQARMVGKLLWINDETYGYKDGKPCVIIKSNQVLGFNPKPP 1076
K + + +G +NDETYGYKDGKPCVIIK N+VLGF PKPP
Sbjct: 248 KVCRFRLEWLGNCSGLNDETYGYKDGKPCVIIKLNRVLGFKPKPP 292
>ref|XP_003131993.1| PREDICTED: sodium/potassium-transporting ATPase subunit beta-2-like
[Sus scrofa].
Length = 290
Score = 116 bits (290), Expect = 2e-26
Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 2/161 (1%)
Frame = +1
Query: 514 GKAKEEGSWKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISE 693
G+ EE WK+F+WN +F+GRTG SW ILLFY++FYG L +F T+ VML T+S+
Sbjct: 11 GQVVEE--WKEFVWNPRTHQFMGRTGTSWAFILLFYLVFYGFLTAMFTLTMWVMLQTVSD 68
Query: 694 FKPTYQDRVAPPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKD--LAQKDDM 867
P YQDR+A PGL P+++ ++ +D +S++ +V + +FLE Y D AQK+D+
Sbjct: 69 HTPKYQDRLATPGLMIRPKTENLDVIVNVSDTESWDQHVQKLNKFLEPYNDSIQAQKNDV 128
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
P + C+F LGNCSG+
Sbjct: 129 C------RPGRYYEQPDNGVLNYPKRACQFNRTQLGNCSGI 163
>ref|XP_003357955.1| PREDICTED: potassium-transporting ATPase subunit beta-like [Sus
scrofa].
Length = 290
Score = 77.8 bits (190), Expect(2) = 3e-19
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
++++ WN + + LGRT W I L+YV FY ++GIF I V++ TI + P YQD+
Sbjct: 17 FQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQ 76
Query: 718 VAPPGLTQIPQ---SQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQK-------DDM 867
+ PG+T P + +IS+ +D ++ ++ RFL Y AQ+ +
Sbjct: 77 LKSPGVTLRPDVYGEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQEGSINCTSEKY 136
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSG 987
F++ P+ K C+F + L NCSG
Sbjct: 137 FFQESFLAPNHTKFS------------CKFTADMLQNCSG 164
Score = 35.4 bits (80), Expect(2) = 3e-19
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 993 DETYGYKDGKPCVIIKSNQVLGFNP 1067
D T+G+ +GKPC IIK N+++ F P
Sbjct: 167 DPTFGFAEGKPCFIIKMNRIVKFLP 191
>ref|NP_001001258.1| potassium-transporting ATPase subunit beta [Sus scrofa].
Length = 290
Score = 77.8 bits (190), Expect(2) = 3e-19
Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 10/160 (6%)
Frame = +1
Query: 538 WKKFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDR 717
++++ WN + + LGRT W I L+YV FY ++GIF I V++ TI + P YQD+
Sbjct: 17 FQRYCWNPDTGQMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQ 76
Query: 718 VAPPGLTQIPQ---SQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQK-------DDM 867
+ PG+T P + +IS+ +D ++ ++ RFL Y AQ+ +
Sbjct: 77 LKSPGVTLRPDVYGEKGLDISYNVSDSTTWAGLAHTLHRFLAGYSPAAQEGSINCTSEKY 136
Query: 868 IFEDCGNVPSELKXXXXXXXXXXXXKVCRFRLEWLGNCSG 987
F++ P+ K C+F + L NCSG
Sbjct: 137 FFQESFLAPNHTKFS------------CKFTADMLQNCSG 164
Score = 35.4 bits (80), Expect(2) = 3e-19
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 993 DETYGYKDGKPCVIIKSNQVLGFNP 1067
D T+G+ +GKPC IIK N+++ F P
Sbjct: 167 DPTFGFAEGKPCFIIKMNRIVKFLP 191
>ref|NP_999297.1| protein ATP1B4 [Sus scrofa].
Length = 355
Score = 87.8 bits (216), Expect = 9e-18
Identities = 48/149 (32%), Positives = 79/149 (53%)
Frame = +1
Query: 544 KFIWNSEKKEFLGRTGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVA 723
+++W+ EK+ L RTG S +L+ Y FY LA + + + LTIS + PT+ +RV
Sbjct: 89 EYLWDPEKRMSLARTGQSLSLLLVIYFFFYASLAAVITLCMYTLFLTISPYVPTFTERVK 148
Query: 724 PPGLTQIPQSQKTEISFRPNDPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSEL 903
PPG+ P + +F ++P +++ YV+S+ FL+ Y D Q++ + DC P +
Sbjct: 149 PPGVMIRPFAHSLNFNFNVSEPDTWQHYVISLNGFLQGYNDSLQEEMNV--DC--PPGQ- 203
Query: 904 KXXXXXXXXXXXXKVCRFRLEWLGNCSGL 990
K C+F+ +L NCSGL
Sbjct: 204 -YFIQDGDEDEDKKACQFKRSFLKNCSGL 231
>ref|XP_003132498.2| PREDICTED: sodium/potassium-transporting ATPase subunit beta-3-like
[Sus scrofa].
Length = 255
Score = 72.0 bits (175), Expect = 5e-13
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 1/144 (0%)
Frame = +1
Query: 607 ILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQDRVAPPGLTQIPQS-QKTEISFRPN 783
ILLFY++FY LA +F T+ VML T+++ P Y+D+++ PGL P+ + SF +
Sbjct: 15 ILLFYLVFYVFLAALFAFTMWVMLQTLNDEVPKYRDQISSPGLMVFPKPVSALDYSFSVS 74
Query: 784 DPQSYESYVVSIVRFLEKYKDLAQKDDMIFEDCGNVPSELKXXXXXXXXXXXXKVCRFRL 963
DP SY+ Y+ + +FL+ Y DL ++ ++ DC + CRF L
Sbjct: 75 DPDSYKGYIDDLKKFLKPY-DLEEQKNL--TDCTD-------GKFLEQKGPHYDACRFPL 124
Query: 964 EWLGNCSGLMMKPMATKMANPVSL 1035
L CSG + NP L
Sbjct: 125 NLLEACSGEIDPQFGYSRGNPCIL 148
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,564,552
Number of extensions: 737425
Number of successful extensions: 1923
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1917
Number of HSP's successfully gapped: 11
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007319
(1077 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 504 e-140
gb|GL894624.2| Sus scrofa unplaced genomic scaffold ChrUScaf2508 258 6e-66
>Sscrofa_Chr04
|| Length = 143465943
Score = 504 bits (254), Expect = e-140
Identities = 257/258 (99%)
Strand = Plus / Plus
Query: 349 tccaccgcgcgtctggcactctgaaagccgcagcggcagcggcgggtgcagcctgcggag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89602575 tccaccgcgcgtctggcactctgaaagccgcagcggcagcggcgggtgcagcctgcggag 89602634
Query: 409 agccaggcaggggacactgatcggcaggagaggacgcaagagcgcacgcggcaatcaccc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89602635 agccaggcaggggacactgatcggcaggagaggacgcaagagcgcacgcggcaatcaccc 89602694
Query: 469 atcttcaatccccgcagcagctgctgacccgccaccatggcccgcggaaaagccaaggag 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89602695 atcttcaatccccgcagcagctgctgacccgccaccatggcccgcggaaaagccaaggag 89602754
Query: 529 gagggcagctggaagaaattcatctggaactccgaaaagaaggagtttttgggcaggacc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89602755 gagggcagctggaagaaattcatctggaactccgaaaagaaggagtttttgggcaggacc 89602814
Query: 589 ggtggcagttggtttaag 606
||||||||||||| ||||
Sbjct: 89602815 ggtggcagttggtgtaag 89602832
Score = 472 bits (238), Expect = e-130
Identities = 269/278 (96%), Gaps = 1/278 (0%)
Strand = Plus / Plus
Query: 6 atttctcggctcgtggcgggtggctgtagcctgggcccgcagtccatttgttcgtccttc 65
||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 89602233 atttctcgggtcgtggcgggtggatgtagcctgggcccgcaggccatttgttcgtccttc 89602292
Query: 66 cctttgacttttccttgtcccctgcctgtctctgcagaggtcacaggaggcgggggccga 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89602293 cctttgacttttccttgtcccctgcctgtctctgcagaggtcacaggaggcgggggccga 89602352
Query: 126 gcacgcgtcctcggtggcagctggagtggcagctgcgggtttgtggagcccccgaatccc 185
||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||
Sbjct: 89602353 gcacgcgtcctcggtggcacatggagtggcagctgcggatatgtggagcccccgaatccc 89602412
Query: 186 caagggcaaggggagcgcgtggcggaccaaagagggccagtgagcggtcgtgcgcccacc 245
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 89602413 caaggccaaggggagcgcgt-gcggaccaaagagggccagtgagcggtcgtgcgcccacc 89602471
Query: 246 aataggtgcggggctcggagacgcccagcctgcgcggt 283
||||||||||||||||||||||||||||||||||||||
Sbjct: 89602472 aataggtgcggggctcggagacgcccagcctgcgcggt 89602509
Score = 319 bits (161), Expect = 2e-84
Identities = 180/185 (97%), Gaps = 1/185 (0%)
Strand = Plus / Minus
Query: 887 atgtgcccagcgaactcaaagaacgaggagaatataacaacgaacgaggagagcgaaaag 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89535213 atgtgcccagcgaactcaaagaacgaggagaatataacaacgaacgaggagagcgaaaag 89535154
Query: 947 tgtgcaggttcaggctcgaatggttgggaaactgctctggatt-aatgatgaaacctatg 1005
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 89535153 tgtgcaggttcaggctcgaatggttgggaaactgctctggattaaatgatgaaacctatg 89535094
Query: 1006 gctacaaagatggcaaaccctgtgtcattataaagtccaaccaagttctgggcttcaacc 1065
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct: 89535093 gctacaaagatggcaaaccctgtgtcattataaagctcaaccgagttctgggcttcaaac 89535034
Query: 1066 ctaag 1070
|||||
Sbjct: 89535033 ctaag 89535029
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 729 aggattaacacagattcctcagagccaaaagactgaaatttcttttcgtcctaatgatcc 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89536975 aggattaacacagattcctcagagccaaaagactgaaatttcttttcgtcctaatgatcc 89536916
Query: 789 ccaaagctatgaatcctatgtggtaagcatagtgaggttcctggagaagtacaaagattt 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89536915 ccaaagctatgaatcctatgtggtaagcatagtgaggttcctggagaagtacaaagattt 89536856
Query: 849 ggcgcagaaggatgatatgatttttgaagattgtggca 886
||||||||||||||||||||||||||||||||||||||
Sbjct: 89536855 ggcgcagaaggatgatatgatttttgaagattgtggca 89536818
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 602 ttaagatccttctattctacgttatattttatggctgcctggctggcatcttcattggaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89550423 ttaagatccttctattctacgttatattttatggctgcctggctggcatcttcattggaa 89550364
Query: 662 ccatccaagtgatgctgctcaccatcagtgaatttaagcccacatatcaggaccgagtgg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89550363 ccatccaagtgatgctgctcaccatcagtgaatttaagcccacatatcaggaccgagtgg 89550304
Query: 722 ccccaccagg 731
||||||||||
Sbjct: 89550303 ccccaccagg 89550294
>gb|GL894624.2| Sus scrofa unplaced genomic scaffold ChrUScaf2508
Length = 179686
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 602 ttaagatccttctattctacgttatattttatggctgcctggctggcatcttcattggaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127438 ttaagatccttctattctacgttatattttatggctgcctggctggcatcttcattggaa 127497
Query: 662 ccatccaagtgatgctgctcaccatcagtgaatttaagcccacatatcaggaccgagtgg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127498 ccatccaagtgatgctgctcaccatcagtgaatttaagcccacatatcaggaccgagtgg 127557
Query: 722 ccccaccagg 731
||||||||||
Sbjct: 127558 ccccaccagg 127567
Score = 153 bits (77), Expect = 2e-34
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 526 gaggagggcagctggaagaaattcatctggaactccgaaaagaaggagtttttgggcagg 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122640 gaggagggcagctggaagaaattcatctggaactccgaaaagaaggagtttttgggcagg 122699
Query: 586 accggtggcagttggtttaag 606
|||||||||||||||| ||||
Sbjct: 122700 accggtggcagttggtgtaag 122720
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,645,489
Number of extensions: 155
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 7
Length of query: 1077
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1056
Effective length of database: 2,808,413,156
Effective search space: 2965684292736
Effective search space used: 2965684292736
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)