Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007321
(1008 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029438.1| proteasome subunit beta type-4 precursor [Bo... 517 e-147
Alignment gi|NP_001015615.1| proteasome subunit beta type-2 [Bos taurus]. 54 2e-07
Alignment gi|NP_001032701.1| proteasome subunit beta type-5 precursor [Bo... 52 1e-06
Alignment gi|NP_001035570.1| proteasome subunit beta type-8 precursor [Bo... 50 2e-06
>ref|NP_001029438.1| proteasome subunit beta type-4 precursor [Bos taurus].
Length = 264
Score = 517 bits (1332), Expect = e-147
Identities = 256/264 (96%), Positives = 259/264 (98%)
Frame = +2
Query: 38 MESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVK 217
ME++LESRSG WAGGPAPGQFYRIPPTPGS VDP S LYGSPITRTQNPMVTGTSVLG+K
Sbjct: 1 MEALLESRSGLWAGGPAPGQFYRIPPTPGSSVDPVSALYGSPITRTQNPMVTGTSVLGLK 60
Query: 218 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 397
FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE
Sbjct: 61 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 120
Query: 398 LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 577
LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP
Sbjct: 121 LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 180
Query: 578 SLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEK 757
SLATGYGAYLAQPLLREVLEKQPVLSQ EARELVERCMRVLYYRDARSYNRFQIATVTEK
Sbjct: 181 SLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEK 240
Query: 758 GVEIEGPLSAETNWDIAHMISGFE 829
GVEIEGPLSAETNWDIAHMISGFE
Sbjct: 241 GVEIEGPLSAETNWDIAHMISGFE 264
>ref|NP_001015615.1| proteasome subunit beta type-2 [Bos taurus].
Length = 201
Score = 54.3 bits (129), Expect = 2e-07
Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Frame = +2
Query: 203 VLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQM 382
++G++ V++A+D + + + + ++ +++ +L G+ D + + Q
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI-QK 62
Query: 383 VIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES-FLGYVDMLG 559
+ + +G+ SP A ++ R + P +++ GY + E L Y+D L
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 560 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQI 739
+AP A GYGA+L +L P +S+ +A EL+ +C+ L R + F +
Sbjct: 123 ALAKAPFAAHGYGAFLTLSILDRYY--TPTISREKAVELLRKCLEELQKRFILNLPTFSV 180
Query: 740 ATVTEKGV 763
+ G+
Sbjct: 181 RIIDRNGI 188
>ref|NP_001032701.1| proteasome subunit beta type-5 precursor [Bos taurus].
Length = 263
Score = 51.6 bits (122), Expect = 1e-06
Identities = 53/217 (24%), Positives = 90/217 (41%)
Frame = +2
Query: 110 PPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNI 289
P +P + A+ +G P + ++ GT+ L KF GV++AAD + G+ + +
Sbjct: 32 PGSPSDGLSLAAPSWGVP-EEPRIEILHGTTTLAFKFRHGVIVAADSRATAGAYIASQTV 90
Query: 290 SRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSR 469
+++ +N + +G AD + +++L + E L + S A L +Y
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE-LRNKERISVAAASKLLANMVYQY 149
Query: 470 RSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 649
+ M TM+ G G L YVD G + + G G+ A ++
Sbjct: 150 KG-MGLSMGTMICGWDKRGPG-LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD-- 205
Query: 650 LSQAEARELVERCMRVLYYRDARSYNRFQIATVTEKG 760
L EA +L R + YRDA S + V E G
Sbjct: 206 LEVEEAYDLARRAIYQATYRDAYSGGSVSLYHVREDG 242
>ref|NP_001035570.1| proteasome subunit beta type-8 precursor [Bos taurus].
Length = 276
Score = 50.4 bits (119), Expect = 2e-06
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 1/209 (0%)
Frame = +2
Query: 149 LYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG 328
L G+ ++ Q M GT+ L KF+ GV++A D S G+ +++++ +N +
Sbjct: 57 LGGNGESKVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGNYIDTLKVNKVIEINPYLLGT 116
Query: 329 ASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVI 508
SG AD QY +++L + L +G S A L+ M R M +M+
Sbjct: 117 MSGCAADCQYWERLLAK-ECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMIC 174
Query: 509 GGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERC 688
G G L YV+ G +TG G A ++ +P LS EA +L R
Sbjct: 175 GWDKKGPG-LYYVNDSGTRLSGNMFSTGSGNSHAYGVMDS--GYRPDLSIEEAYDLGRRA 231
Query: 689 MRVLYYRDARSYNRFQIATVTEKG-VEIE 772
+ +RD+ S + + E G V++E
Sbjct: 232 IVHATHRDSYSGGVVNMYHMKEDGWVKVE 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,460,049
Number of extensions: 1168296
Number of successful extensions: 4415
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4399
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,273,310
Effective search space: 3325681230
Effective search space used: 3325681230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007321
(1008 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533057.2| PREDICTED: similar to Proteasome subunit beta t... 503 e-142
Alignment gi|NP_001041550.1| proteasome subunit beta type-8 precursor [Ca... 64 2e-10
Alignment gi|XP_532564.2| PREDICTED: similar to Proteasome subunit beta t... 54 2e-07
Alignment gi|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit... 51 2e-06
>ref|XP_533057.2| PREDICTED: similar to Proteasome subunit beta type 4 precursor
(Proteasome beta chain) (Macropain beta chain)
(Multicatalytic endopeptidase complex beta chain)
(Proteasome chain 3) [Canis familiaris].
Length = 311
Score = 503 bits (1294), Expect = e-142
Identities = 252/274 (91%), Positives = 260/274 (94%)
Frame = +2
Query: 8 AFIS*ATVTKMESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPM 187
A IS ATVTKME+ LESRS WAGGPAPGQFY IPP+ + V+PA YG P+TRTQNPM
Sbjct: 38 AVISSATVTKMEAFLESRSRVWAGGPAPGQFYHIPPSSVASVEPAFSPYGGPVTRTQNPM 97
Query: 188 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQ 367
VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN+STMLGASGDYADFQYLKQ
Sbjct: 98 VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQ 157
Query: 368 VLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYV 547
VLGQMVIDEELLGDGHSYSP+AIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYV
Sbjct: 158 VLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYV 217
Query: 548 DMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYN 727
DMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQ EARELVERCMRVLYYRDARSYN
Sbjct: 218 DMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYN 277
Query: 728 RFQIATVTEKGVEIEGPLSAETNWDIAHMISGFE 829
RFQIATVTEKGVEIEGPLSAETNW+IAHMISGFE
Sbjct: 278 RFQIATVTEKGVEIEGPLSAETNWEIAHMISGFE 311
>ref|NP_001041550.1| proteasome subunit beta type-8 precursor [Canis lupus familiaris].
Length = 276
Score = 63.9 bits (154), Expect = 2e-10
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 1/197 (0%)
Frame = +2
Query: 185 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLK 364
MV GT+ L KF+ GV++A D + G+ +++++ +N S + SG AD QY +
Sbjct: 69 MVHGTTTLAFKFQHGVIVAVDSRATAGNYISSSRVNKVIEINPSLLGTMSGCAADCQYWE 128
Query: 365 QVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGY 544
++L + L +G S A L+ +Y R M+ +M+ G G L Y
Sbjct: 129 RLLAK-ECRLYYLRNGERISVSAASKLLSNMVYQYRG-MDLSMGSMICGWDKKGPG-LYY 185
Query: 545 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSY 724
VD G +TG G+ A ++ QP LS EA EL R + +RD+ S
Sbjct: 186 VDQNGTRLSGNMFSTGSGSTYAYGVMDS--GYQPSLSPEEAYELGRRAITYATHRDSYSG 243
Query: 725 NRFQIATVTEKG-VEIE 772
+ + E G V++E
Sbjct: 244 GIINMYHMKEDGWVKVE 260
>ref|XP_532564.2| PREDICTED: similar to Proteasome subunit beta type 2 (Proteasome
component C7-I) (Macropain subunit C7-I) (Multicatalytic
endopeptidase complex subunit C7-I) [Canis familiaris].
Length = 246
Score = 54.3 bits (129), Expect = 2e-07
Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Frame = +2
Query: 203 VLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQM 382
++G++ V++A+D + + + + ++ +++ +L G+ D + + Q
Sbjct: 49 LIGIQGPDYVLVASDQVAASSIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI-QK 107
Query: 383 VIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES-FLGYVDMLG 559
+ + +G+ SP A ++ R + P +++ GY + E L Y+D L
Sbjct: 108 NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 167
Query: 560 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQI 739
+AP A GYGA+L +L P +S+ A EL+ +C+ L R + F +
Sbjct: 168 ALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKRFILNLPTFSV 225
Query: 740 ATVTEKGV 763
+ + G+
Sbjct: 226 RIIDKNGI 233
>ref|XP_537370.2| PREDICTED: similar to proteasome beta 5 subunit [Canis familiaris].
Length = 263
Score = 51.2 bits (121), Expect = 2e-06
Identities = 48/192 (25%), Positives = 81/192 (42%)
Frame = +2
Query: 185 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLK 364
M+ GT+ L KF+ GV++AAD + G+ + + +++ +N + +G AD + +
Sbjct: 56 MLHGTTTLAFKFQHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWE 115
Query: 365 QVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGY 544
++L + E L + S A L +Y + M TM+ G G L Y
Sbjct: 116 RLLARQCRIYE-LRNKERISVAAASKLLANMVYQYKG-MGLSMGTMICGWDKRGPG-LYY 172
Query: 545 VDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSY 724
VD G + + G G+ A ++ L +A +L R + YRDA S
Sbjct: 173 VDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD--LEVEQAYDLARRAIYQATYRDAYSG 230
Query: 725 NRFQIATVTEKG 760
+ V E G
Sbjct: 231 GAVNLYHVREDG 242
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,087,981
Number of extensions: 1188193
Number of successful extensions: 4604
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4598
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 233
Effective length of database: 15,440,896
Effective search space: 3597728768
Effective search space used: 3597728768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007321
(1008 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002787.2| proteasome subunit beta type-4 [Homo sapiens]. 502 e-142
Alignment gi|NP_002785.1| proteasome subunit beta type-2 isoform 1 [Homo ... 54 2e-07
Alignment gi|NP_683720.2| proteasome subunit beta type-8 isoform E2 propr... 54 3e-07
Alignment gi|NP_004150.1| proteasome subunit beta type-8 isoform E1 propr... 54 3e-07
Alignment gi|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo ... 52 1e-06
Alignment gi|NP_001186708.1| proteasome subunit beta type-2 isoform 2 [Ho... 50 3e-06
>ref|NP_002787.2| proteasome subunit beta type-4 [Homo sapiens].
Length = 264
Score = 502 bits (1292), Expect = e-142
Identities = 249/264 (94%), Positives = 253/264 (95%)
Frame = +2
Query: 38 MESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVK 217
ME+ L SRSG WAGGPAPGQFYRIP TP S +DPAS LY PITRTQNPMVTGTSVLGVK
Sbjct: 1 MEAFLGSRSGLWAGGPAPGQFYRIPSTPDSFMDPASALYRGPITRTQNPMVTGTSVLGVK 60
Query: 218 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 397
FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE
Sbjct: 61 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 120
Query: 398 LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 577
LLGDGHSYSP+AIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP
Sbjct: 121 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 180
Query: 578 SLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEK 757
SLATGYGAYLAQPLLREVLEKQPVLSQ EAR+LVERCMRVLYYRDARSYNRFQIATVTEK
Sbjct: 181 SLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEK 240
Query: 758 GVEIEGPLSAETNWDIAHMISGFE 829
GVEIEGPLS ETNWDIAHMISGFE
Sbjct: 241 GVEIEGPLSTETNWDIAHMISGFE 264
>ref|NP_002785.1| proteasome subunit beta type-2 isoform 1 [Homo sapiens].
Length = 201
Score = 53.9 bits (128), Expect = 2e-07
Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Frame = +2
Query: 203 VLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQM 382
++G++ V++A+D + + + + ++ +++ +L G+ D + + Q
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI-QK 62
Query: 383 VIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES-FLGYVDMLG 559
+ + +G+ SP A ++ R + P +++ GY + E L Y+D L
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 560 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQI 739
+AP A GYGA+L +L P +S+ A EL+ +C+ L R + F +
Sbjct: 123 ALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKRFILNLPTFSV 180
Query: 740 ATVTEKGV 763
+ + G+
Sbjct: 181 RIIDKNGI 188
>ref|NP_683720.2| proteasome subunit beta type-8 isoform E2 proprotein [Homo
sapiens].
Length = 276
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Frame = +2
Query: 149 LYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG 328
L G Q M GT+ L KF+ GV+ A D S GS +++++ +N +
Sbjct: 57 LGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGT 116
Query: 329 ASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVI 508
SG AD QY +++L + L +G S A L+ M R M +M+
Sbjct: 117 MSGCAADCQYWERLLAK-ECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMIC 174
Query: 509 GGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERC 688
G G L YVD G +TG G A ++ +P LS EA +L R
Sbjct: 175 GWDKKGPG-LYYVDEHGTRLSGNMFSTGSGNTYAYGVMDS--GYRPNLSPEEAYDLGRRA 231
Query: 689 MRVLYYRDARSYNRFQIATVTEKG-VEIE 772
+ +RD+ S + + E G V++E
Sbjct: 232 IAYATHRDSYSGGVVNMYHMKEDGWVKVE 260
>ref|NP_004150.1| proteasome subunit beta type-8 isoform E1 proprotein [Homo
sapiens].
Length = 272
Score = 53.5 bits (127), Expect = 3e-07
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 1/209 (0%)
Frame = +2
Query: 149 LYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG 328
L G Q M GT+ L KF+ GV+ A D S GS +++++ +N +
Sbjct: 53 LGGDGERNVQIEMAHGTTTLAFKFQHGVIAAVDSRASAGSYISALRVNKVIEINPYLLGT 112
Query: 329 ASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVI 508
SG AD QY +++L + L +G S A L+ M R M +M+
Sbjct: 113 MSGCAADCQYWERLLAK-ECRLYYLRNGERISVSAASKLLSNMMCQYRG-MGLSMGSMIC 170
Query: 509 GGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERC 688
G G L YVD G +TG G A ++ +P LS EA +L R
Sbjct: 171 GWDKKGPG-LYYVDEHGTRLSGNMFSTGSGNTYAYGVMDS--GYRPNLSPEEAYDLGRRA 227
Query: 689 MRVLYYRDARSYNRFQIATVTEKG-VEIE 772
+ +RD+ S + + E G V++E
Sbjct: 228 IAYATHRDSYSGGVVNMYHMKEDGWVKVE 256
>ref|NP_002788.1| proteasome subunit beta type-5 isoform 1 [Homo sapiens].
Length = 263
Score = 51.6 bits (122), Expect = 1e-06
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 6/220 (2%)
Frame = +2
Query: 119 PGSIVDPASVL---YGSPITRTQNP---MVTGTSVLGVKFEGGVVIAADMLGSYGSLARF 280
PGS+ D S+ +G P + P M+ GT+ L KF GV++AAD + G+
Sbjct: 32 PGSLSDGLSLAAPGWGVP----EEPGIEMLHGTTTLAFKFRHGVIVAADSRATAGAYIAS 87
Query: 281 RNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAM 460
+ + +++ +N + +G AD + +++L + E L + S A L +
Sbjct: 88 QTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE-LRNKERISVAAASKLLANMV 146
Query: 461 YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK 640
Y + M TM+ G G L YVD G + + G G+ A ++
Sbjct: 147 YQYKG-MGLSMGTMICGWDKRGPG-LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSY 204
Query: 641 QPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEKG 760
L +A +L R + YRDA S + V E G
Sbjct: 205 D--LEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDG 242
>ref|NP_001186708.1| proteasome subunit beta type-2 isoform 2 [Homo sapiens].
Length = 176
Score = 50.1 bits (118), Expect = 3e-06
Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 2/149 (1%)
Frame = +2
Query: 323 LGASGDYADF-QYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNT 499
+G +GD F +Y+ Q + + +G+ SP A ++ R + P
Sbjct: 22 VGEAGDTVQFAEYI-----QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVN 76
Query: 500 MVIGGYADGES-FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEAREL 676
+++ GY + E L Y+D L +AP A GYGA+L +L P +S+ A EL
Sbjct: 77 LLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVEL 134
Query: 677 VERCMRVLYYRDARSYNRFQIATVTEKGV 763
+ +C+ L R + F + + + G+
Sbjct: 135 LRKCLEELQKRFILNLPTFSVRIIDKNGI 163
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,234,629
Number of extensions: 1160689
Number of successful extensions: 4283
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4272
Number of HSP's successfully gapped: 6
Length of query: 336
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 233
Effective length of database: 14,901,872
Effective search space: 3472136176
Effective search space used: 3472136176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007321
(1008 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032971.2| proteasome subunit beta type-4 precursor [Mus m... 497 e-141
Alignment gi|NP_035316.1| proteasome subunit beta type-5 [Mus musculus]. 54 1e-07
Alignment gi|NP_036100.3| proteasome subunit beta type-2 [Mus musculus]. 54 2e-07
Alignment gi|NP_034854.2| proteasome subunit beta type-8 precursor [Mus m... 51 2e-06
>ref|NP_032971.2| proteasome subunit beta type-4 precursor [Mus musculus].
Length = 264
Score = 497 bits (1280), Expect = e-141
Identities = 245/264 (92%), Positives = 253/264 (95%)
Frame = +2
Query: 38 MESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVK 217
ME+ ESR+GHWAGGPAPGQFYRIP TP ++DPAS PITRTQNPMVTGTSVLGVK
Sbjct: 1 MEAFWESRAGHWAGGPAPGQFYRIPATPSGLMDPASAPCEGPITRTQNPMVTGTSVLGVK 60
Query: 218 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 397
F+GGVVIAADMLGSYGSLARFRNISRIMRVN+STMLGASGDYADFQYLKQVLGQMVIDEE
Sbjct: 61 FDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEE 120
Query: 398 LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 577
LLGDGHSYSP+AIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP
Sbjct: 121 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 180
Query: 578 SLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEK 757
SLATGYGAYLAQPLLREVLEKQPVLSQ EARELVERCMRVLYYRDARSYNRFQIATVTEK
Sbjct: 181 SLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEK 240
Query: 758 GVEIEGPLSAETNWDIAHMISGFE 829
GVEIEGPLSA+TNWDIAHMISGFE
Sbjct: 241 GVEIEGPLSAQTNWDIAHMISGFE 264
>ref|NP_035316.1| proteasome subunit beta type-5 [Mus musculus].
Length = 264
Score = 54.3 bits (129), Expect = 1e-07
Identities = 55/217 (25%), Positives = 91/217 (41%)
Frame = +2
Query: 110 PPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNI 289
P +PG + A+ +G P + M+ GT+ L KF GV++AAD + G+ + +
Sbjct: 32 PGSPGDGLSLAAPSWGVP-EEPRIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTV 90
Query: 290 SRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSR 469
+++ +N + +G AD + +++L + E L + S A L +Y
Sbjct: 91 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE-LRNKERISVAAASKLLANMVYQY 149
Query: 470 RSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 649
+ M TM+ G G L YVD G + + G G+ A ++
Sbjct: 150 KG-MGLSMGTMICGWDKRGPG-LYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGYSYD-- 205
Query: 650 LSQAEARELVERCMRVLYYRDARSYNRFQIATVTEKG 760
L EA +L R + YRDA S + V E G
Sbjct: 206 LKVEEAYDLARRAIYQATYRDAYSGGAVNLYHVREDG 242
>ref|NP_036100.3| proteasome subunit beta type-2 [Mus musculus].
Length = 201
Score = 53.9 bits (128), Expect = 2e-07
Identities = 40/188 (21%), Positives = 85/188 (45%), Gaps = 1/188 (0%)
Frame = +2
Query: 203 VLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQM 382
++G++ V++A+D + + + + ++ +++ +L G+ D + + Q
Sbjct: 4 LIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYI-QK 62
Query: 383 VIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGES-FLGYVDMLG 559
+ + +G+ SP A ++ R + P +++ GY + E L Y+D L
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 560 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQI 739
+AP A GYGA+L +L P +S+ A EL+ +C+ L R + F +
Sbjct: 123 ALAKAPFAAHGYGAFLTLSILDRYY--TPTISRERAVELLRKCLEELQKRFILNLPTFSV 180
Query: 740 ATVTEKGV 763
+ + G+
Sbjct: 181 RVIDKDGI 188
>ref|NP_034854.2| proteasome subunit beta type-8 precursor [Mus musculus].
Length = 276
Score = 50.8 bits (120), Expect = 2e-06
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 1/207 (0%)
Frame = +2
Query: 155 GSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGAS 334
G Q M GT+ L KF+ GV++A D + GS +++++ +N + S
Sbjct: 59 GDQERNVQIEMAHGTTTLAFKFQHGVIVAVDSRATAGSYISSLRMNKVIEINPYLLGTMS 118
Query: 335 GDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGG 514
G AD QY +++L + L +G S A L+ M R M +M+ G
Sbjct: 119 GCAADCQYWERLLAK-ECRLYYLRNGERISVSAASKLLSNMMLQYRG-MGLSMGSMICGW 176
Query: 515 YADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMR 694
G L YVD G +TG G A ++ + LS EA +L R +
Sbjct: 177 DKKGPG-LYYVDDNGTRLSGQMFSTGSGNTYAYGVMDSGYRQD--LSPEEAYDLGRRAIA 233
Query: 695 VLYYRDARSYNRFQIATVTEKG-VEIE 772
+RD S + + E G V++E
Sbjct: 234 YATHRDNYSGGVVNMYHMKEDGWVKVE 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,877,837
Number of extensions: 968429
Number of successful extensions: 3516
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3512
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 234
Effective length of database: 12,553,887
Effective search space: 2937609558
Effective search space used: 2937609558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007321
(1008 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929676.1| PREDICTED: proteasome subunit beta type-4 is... 531 e-151
Alignment gi|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [S... 54 2e-07
Alignment gi|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa]. 53 3e-07
Alignment gi|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [S... 52 7e-07
>ref|XP_001929676.1| PREDICTED: proteasome subunit beta type-4 isoform 1 [Sus scrofa].
Length = 264
Score = 531 bits (1369), Expect = e-151
Identities = 264/264 (100%), Positives = 264/264 (100%)
Frame = +2
Query: 38 MESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVK 217
MESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVK
Sbjct: 1 MESILESRSGHWAGGPAPGQFYRIPPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVK 60
Query: 218 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 397
FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE
Sbjct: 61 FEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE 120
Query: 398 LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 577
LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP
Sbjct: 121 LLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAP 180
Query: 578 SLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEK 757
SLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEK
Sbjct: 181 SLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERCMRVLYYRDARSYNRFQIATVTEK 240
Query: 758 GVEIEGPLSAETNWDIAHMISGFE 829
GVEIEGPLSAETNWDIAHMISGFE
Sbjct: 241 GVEIEGPLSAETNWDIAHMISGFE 264
>ref|XP_001924154.2| PREDICTED: proteasome subunit beta type-8 [Sus scrofa].
Length = 276
Score = 53.5 bits (127), Expect = 2e-07
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 1/209 (0%)
Frame = +2
Query: 149 LYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG 328
L G Q M GT+ L KF+ GV++A D S GS +++++ +N +
Sbjct: 57 LGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGT 116
Query: 329 ASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVI 508
SG AD QY +++L + L +G S A L+ MY R M +M+
Sbjct: 117 MSGSAADCQYWERLLAK-ECRLYYLRNGDRISVSAASKLLSNMMYQYRG-MGLSMGSMIC 174
Query: 509 GGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERC 688
G G L YVD G +TG G A ++ + LS EA +L R
Sbjct: 175 GWDKKGPG-LYYVDENGTRLSGNMFSTGSGNTYAYGVMDS--GHRYDLSIEEAYDLGRRA 231
Query: 689 MRVLYYRDARSYNRFQIATVTEKG-VEIE 772
+ +RD+ S + + E G V++E
Sbjct: 232 IVHATHRDSYSGGVVNMYHMKEDGWVKVE 260
>ref|NP_999100.1| proteasome subunit beta type-8 [Sus scrofa].
Length = 260
Score = 52.8 bits (125), Expect = 3e-07
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 1/209 (0%)
Frame = +2
Query: 149 LYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG 328
L G Q M GT+ L KF+ GV++A D S GS +++++ +N +
Sbjct: 41 LGGDGERNVQIEMAHGTTTLAFKFQHGVIVAVDSRASAGSYIATLRVNKVIEINPYLLGT 100
Query: 329 ASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVI 508
SG AD QY +++L + L +G S A L+ MY R M +M+
Sbjct: 101 MSGCAADCQYWERLLAK-ECRLYYLRNGERISVSAASKLLSNMMYQYRG-MGLSMGSMIC 158
Query: 509 GGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQAEARELVERC 688
G G L YVD G +TG G A ++ + LS EA +L R
Sbjct: 159 GWDKKGPG-LYYVDENGTRLSGNMFSTGSGNTYAYGVMDS--GHRYDLSIEEAYDLGRRA 215
Query: 689 MRVLYYRDARSYNRFQIATVTEKG-VEIE 772
+ +RD+ S + + E G V++E
Sbjct: 216 IVHATHRDSYSGGVVNMYHMKEDGWVKVE 244
>ref|XP_001924480.2| PREDICTED: proteasome subunit beta type-5 [Sus scrofa].
Length = 275
Score = 51.6 bits (122), Expect = 7e-07
Identities = 53/217 (24%), Positives = 90/217 (41%)
Frame = +2
Query: 110 PPTPGSIVDPASVLYGSPITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNI 289
P +PG + + +G P + M+ GT+ L KF GV++AAD + G+ + +
Sbjct: 44 PGSPGDGLSLVAPSWGVP-EEPRIEMLHGTTTLAFKFLHGVIVAADSRATAGAYIASQTV 102
Query: 290 SRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSR 469
+++ +N + +G AD + +++L + E L + S A L +Y
Sbjct: 103 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE-LRNKERISVAAASKLLANMVYQY 161
Query: 470 RSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 649
+ M TM+ G G L YVD G + + G G+ A ++
Sbjct: 162 KG-MGLSMGTMICGWDKRGPG-LYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYD-- 217
Query: 650 LSQAEARELVERCMRVLYYRDARSYNRFQIATVTEKG 760
L +A +L R + YRDA S + V E G
Sbjct: 218 LEVEQAYDLARRAIYQATYRDAYSGGSVNLYHVREDG 254
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,291,382
Number of extensions: 782034
Number of successful extensions: 2906
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2897
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,879,129
Effective search space: 2104353573
Effective search space used: 2104353573
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007321
(1008 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 404 e-110
Sscrofa_Chr02 70 3e-09
>Sscrofa_Chr04
|| Length = 143465943
Score = 404 bits (204), Expect = e-110
Identities = 207/208 (99%)
Strand = Plus / Minus
Query: 178 gaaccccatggtgaccgggacctcggttctgggagtcaagtttgagggcggagtggtgat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107038263 gaaccccatggtgaccgggacctcggttctgggagtcaagtttgagggcggagtggtgat 107038204
Query: 238 tgcagcagacatgctgggctcctatggctccttggctcgtttccgcaacatctctcgcat 297
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 107038203 tgcagcagacatgctgggctcctatggttccttggctcgtttccgcaacatctctcgcat 107038144
Query: 298 tatgcgagtcaacaacagcaccatgctgggtgcttcaggagactacgctgatttccaata 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107038143 tatgcgagtcaacaacagcaccatgctgggtgcttcaggagactacgctgatttccaata 107038084
Query: 358 tttgaagcaagttctcggccaaatggtg 385
||||||||||||||||||||||||||||
Sbjct: 107038083 tttgaagcaagttctcggccaaatggtg 107038056
Score = 351 bits (177), Expect = 5e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 2 gcaaacgctttcatttcttgagctacggtgactaagatggaatcgattttggagtcgcgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107038681 gcaaacgctttcatttcttgagctacggtgactaagatggaatcgattttggagtcgcgg 107038622
Query: 62 tcgggacactgggccgggggtccggctcctggacagttctaccgcattcctcccactcct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107038621 tcgggacactgggccgggggtccggctcctggacagttctaccgcattcctcccactcct 107038562
Query: 122 ggatccatcgtggacccggcatccgtgctctatgggagtccgattacgcgcacccag 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107038561 ggatccatcgtggacccggcatccgtgctctatgggagtccgattacgcgcacccag 107038505
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Minus
Query: 385 gattgatgaggagctgctgggagatggacacagctatagtcctaaagctatccattcgtg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107037792 gattgatgaggagctgctgggagatggacacagctatagtcctaaagctatccattcgtg 107037733
Query: 445 gctgaccagggccatgtacagccgccgctccaagatgaaccccctgtggaacaccatggt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107037732 gctgaccagggccatgtacagccgccgctccaagatgaaccccctgtggaacaccatggt 107037673
Query: 505 catcggaggctatgctgatggagagag 531
|||||||||||||||||||||||||||
Sbjct: 107037672 catcggaggctatgctgatggagagag 107037646
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 612 agcctctgttgcgagaagttctggagaagcagccagtgctgagccaggccgaggcccgag 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107037044 agcctctgttgcgagaagttctggagaagcagccagtgctgagccaggccgaggcccgag 107036985
Query: 672 agctagtggaacgctgcatgcgagtgctgtactatcgagatgcccgttcttataacagg 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107036984 agctagtggaacgctgcatgcgagtgctgtactatcgagatgcccgttcttataacagg 107036926
Score = 202 bits (102), Expect = 3e-49
Identities = 117/122 (95%), Gaps = 5/122 (4%)
Strand = Plus / Minus
Query: 816 tcagtggctttgaatgaaatatagatagatgcattttccagaactgaagtggtacccttc 875
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107036446 tcagtggctttgaatgaaatatagatagatgcattttccagaactgaagtggtac----- 107036392
Query: 876 ttctaactttgaacgtggctggttcagagatacagttcttttgtaaaataaataaatcct 935
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107036391 ttctaactttgaacgtggctggttcagagatacagttcttttgtaaaataaataaatcct 107036332
Query: 936 tt 937
||
Sbjct: 107036331 tt 107036330
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 730 gtttcaaattgccactgtaaccgaaaaaggtgttgaaatagaaggacccctgtctgcaga 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107036737 gtttcaaattgccactgtaaccgaaaaaggtgttgaaatagaaggacccctgtctgcaga 107036678
Query: 790 gaccaactgggatattgcccacatgatcag 819
||||||||||||||||||||||||||||||
Sbjct: 107036677 gaccaactgggatattgcccacatgatcag 107036648
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 530 agcttcctgggttacgtggacatgcttggtgtagcctatgaagccccttcgctggccact 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107037510 agcttcctgggttacgtggacatgcttggtgtagcctatgaagccccttcgctggccact 107037451
Query: 590 ggttatggtgcatacctggctcag 613
||||||||||||||||||||||||
Sbjct: 107037450 ggttatggtgcatacctggctcag 107037427
>Sscrofa_Chr02
|| Length = 162569375
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 903 agatacagttcttttgtaaaataaataaatccttt 937
|||||||||||||||||||||||||||||||||||
Sbjct: 153553631 agatacagttcttttgtaaaataaataaatccttt 153553597
Score = 69.9 bits (35), Expect = 3e-09
Identities = 35/35 (100%)
Strand = Plus / Minus
Query: 903 agatacagttcttttgtaaaataaataaatccttt 937
|||||||||||||||||||||||||||||||||||
Sbjct: 153649253 agatacagttcttttgtaaaataaataaatccttt 153649219
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,381,937
Number of extensions: 159
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 1008
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 987
Effective length of database: 2,808,413,156
Effective search space: 2771903784972
Effective search space used: 2771903784972
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)