Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007323
(1380 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193044.1| calcium-binding protein 8 [Bos taurus]. 449 e-126
Alignment gi|XP_002698123.1| PREDICTED: calneuron 1-like [Bos taurus]. 449 e-126
Alignment gi|XP_002707748.1| PREDICTED: calcium binding protein 7-like [B... 224 1e-58
Alignment gi|XP_873138.2| PREDICTED: calcium binding protein 7-like [Bos ... 224 1e-58
Alignment gi|NP_777153.1| calcium-binding protein 5 [Bos taurus]. 85 2e-16
Alignment gi|NP_776679.1| calcium-binding protein 1 [Bos taurus]. 84 3e-16
Alignment gi|NP_776681.1| calcium-binding protein 4 [Bos taurus]. 80 3e-15
Alignment gi|NP_776680.1| calcium-binding protein 2 [Bos taurus]. 79 1e-14
Alignment gi|NP_001229516.1| calmodulin 2 (phosphorylase kinase, delta) [... 77 3e-14
Alignment gi|NP_001039714.1| calmodulin 3 [Bos taurus]. 77 3e-14
>ref|NP_001193044.1| calcium-binding protein 8 [Bos taurus].
Length = 261
Score = 449 bits (1154), Expect = e-126
Identities = 228/261 (87%), Positives = 229/261 (87%)
Frame = +1
Query: 265 MRLPEQPGAGKPENXXXXXXXXXXXXXXXXXXXXXDFPTWEKMPFHHVTAGLLYKGNYLN 444
MRLPEQPG GKPEN DFPTW+KMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGEGKPENEEKGGRGAPGGGEEPPRTQAPDFPTWQKMPFHHVTAGLLYKGNYLN 60
Query: 445 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 624
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 625 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 804
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 180
Query: 805 ILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 984
ILYHAFRDHLTMKD SLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 985 MAFIISVMLIAANQILRSGME 1047
MAFIISVMLIAANQILRSGME
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|XP_002698123.1| PREDICTED: calneuron 1-like [Bos taurus].
Length = 261
Score = 449 bits (1154), Expect = e-126
Identities = 228/261 (87%), Positives = 229/261 (87%)
Frame = +1
Query: 265 MRLPEQPGAGKPENXXXXXXXXXXXXXXXXXXXXXDFPTWEKMPFHHVTAGLLYKGNYLN 444
MRLPEQPG GKPEN DFPTW+KMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGEGKPENEEKGGRGAPGGGEEPPRTQAPDFPTWQKMPFHHVTAGLLYKGNYLN 60
Query: 445 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 624
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 625 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 804
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 180
Query: 805 ILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 984
ILYHAFRDHLTMKD SLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 985 MAFIISVMLIAANQILRSGME 1047
MAFIISVMLIAANQILRSGME
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|XP_002707748.1| PREDICTED: calcium binding protein 7-like [Bos taurus].
Length = 601
Score = 224 bits (571), Expect = 1e-58
Identities = 115/180 (63%), Positives = 140/180 (77%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 687
EIREAF+V DRDGNGFISKQELG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T
Sbjct: 423 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 482
Query: 688 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXX 867
+LGPKL +S + F G D++FW+ DMQ++T++ELK +LY F +HL+MKD
Sbjct: 483 LLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMT 542
Query: 868 XXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
S T+ C + E S +Q RQTCVRKSLICAFA+AFIISVMLIAANQ+LRSGM+
Sbjct: 543 EEESHLGTAEECPVDVE-TCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 601
>ref|XP_873138.2| PREDICTED: calcium binding protein 7-like [Bos taurus].
Length = 363
Score = 224 bits (571), Expect = 1e-58
Identities = 115/180 (63%), Positives = 140/180 (77%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 687
EIREAF+V DRDGNGFISKQELG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T
Sbjct: 185 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 244
Query: 688 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXX 867
+LGPKL +S + F G D++FW+ DMQ++T++ELK +LY F +HL+MKD
Sbjct: 245 LLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMT 304
Query: 868 XXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
S T+ C + E S +Q RQTCVRKSLICAFA+AFIISVMLIAANQ+LRSGM+
Sbjct: 305 EEESHLGTAEECPVDVE-TCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 363
>ref|NP_777153.1| calcium-binding protein 5 [Bos taurus].
Length = 173
Score = 84.7 bits (208), Expect = 2e-16
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
+E++E+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDFD
Sbjct: 28 DEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFD 87
Query: 676 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDHLTMK 843
+F+ ++ PKL++ G +G + F +FD ITL EL+ + D LT +
Sbjct: 88 DFVELMTPKLLAETA--GMIGVQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQ 145
Query: 844 D 846
+
Sbjct: 146 E 146
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +1
Query: 502 LDEIREAFRVLDRDGNGFISKQELGMAM-RSLGYMPSEVELAIIMQRLDMDGDGQVDFDE 678
+ E+R+AF+ D +G+G I+ EL AM R LG + E++ ++Q D++GDG VDF+E
Sbjct: 107 VQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQEISEVVQEADINGDGTVDFEE 166
Query: 679 FMTIL 693
F+ ++
Sbjct: 167 FVKMM 171
>ref|NP_776679.1| calcium-binding protein 1 [Bos taurus].
Length = 226
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 81 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 140
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 141 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 187
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 162 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 221
Query: 685 TIL 693
++
Sbjct: 222 RMM 224
>ref|NP_776681.1| calcium-binding protein 4 [Bos taurus].
Length = 279
Score = 80.5 bits (197), Expect = 3e-15
Identities = 56/137 (40%), Positives = 78/137 (56%), Gaps = 4/137 (2%)
Frame = +1
Query: 403 HVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMA 582
H A +Y G LNR G D E + EELDE++ AF D D +G+I ++LG
Sbjct: 109 HDAAQRMY-GPLLNRIF--GKDRE----LGPEELDELQAAFEEFDTDHDGYIGYRDLGEC 161
Query: 583 MRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIF 759
MR+LGYMP+E+EL + Q + M G+VDF+EF+ ++GPKL E LG + F
Sbjct: 162 MRTLGYMPTEMELIEVSQHVKMRMGGRVDFEEFVEMMGPKL--REETAHMLGLRELRIAF 219
Query: 760 WQFDMQ---RITLEELK 801
+FD RIT+ EL+
Sbjct: 220 REFDRDRDGRITVAELR 236
>ref|NP_776680.1| calcium-binding protein 2 [Bos taurus].
Length = 163
Score = 78.6 bits (192), Expect = 1e-14
Identities = 46/120 (38%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E++ AF+ DRD +G+I QELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 21 EEIEELQAAFQEFDRDRDGYIGYQELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 77
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHILYHAFRDHLTMKD 846
+F+ ++GPKL+ +E D + F +FD I+L EL+ L + L+ ++
Sbjct: 78 DFVELMGPKLL-AETADMIGVRELRDAFREFDTNGDGCISLGELRAALKALLGERLSQRE 136
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSL-GYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL A+++L G S+ E+ I++ +D++GDG VDF+EF+
Sbjct: 99 ELRDAFREFDTNGDGCISLGELRAALKALLGERLSQREVDEILRDIDLNGDGLVDFEEFV 158
Query: 685 TIL 693
++
Sbjct: 159 RMM 161
>ref|NP_001229516.1| calmodulin 2 (phosphorylase kinase, delta) [Bos taurus].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_001039714.1| calmodulin 3 [Bos taurus].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,436,573
Number of extensions: 1688341
Number of successful extensions: 6855
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6793
Number of HSP's successfully gapped: 40
Length of query: 460
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 354
Effective length of database: 14,174,046
Effective search space: 5017612284
Effective search space used: 5017612284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007323
(1380 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848809.1| PREDICTED: similar to calneuron 1 [Canis famili... 331 1e-90
Alignment gi|XP_543472.1| PREDICTED: similar to calcium binding protein 7... 248 1e-65
Alignment gi|XP_534711.2| PREDICTED: similar to calcium binding protein 1... 84 3e-16
Alignment gi|XP_541529.2| PREDICTED: similar to calcium binding protein 5... 82 1e-15
Alignment gi|XP_540815.1| PREDICTED: similar to Calcium-binding protein 4... 77 3e-14
Alignment gi|XP_531813.1| PREDICTED: similar to calmodulin 1 isoform 1 [C... 77 3e-14
Alignment gi|XP_537537.1| PREDICTED: similar to calmodulin 1 isoform 1 [C... 77 3e-14
Alignment gi|XP_533635.1| PREDICTED: similar to calmodulin 1 isoform 1 [C... 77 3e-14
Alignment gi|XP_854627.1| PREDICTED: similar to Calcium-binding protein 2... 77 5e-14
Alignment gi|XP_868454.1| PREDICTED: similar to calmodulin 1 isoform 3 [C... 74 3e-13
>ref|XP_848809.1| PREDICTED: similar to calneuron 1 [Canis familiaris].
Length = 213
Score = 331 bits (848), Expect = 1e-90
Identities = 168/180 (93%), Positives = 168/180 (93%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 687
EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT
Sbjct: 34 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 93
Query: 688 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXX 867
ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKD
Sbjct: 94 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDIENIIIN 153
Query: 868 XXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
SL ETS NCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME
Sbjct: 154 EEESLQETSENCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 213
>ref|XP_543472.1| PREDICTED: similar to calcium binding protein 7 [Canis familiaris].
Length = 215
Score = 248 bits (632), Expect = 1e-65
Identities = 130/219 (59%), Positives = 164/219 (74%)
Frame = +1
Query: 391 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 570
MPFH VTA L+Y+G Y +L + ++ +I +EL+EIREAF+V DRDGNGFISKQE
Sbjct: 1 MPFHPVTAALMYRGIYTVPNLLS---EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQE 57
Query: 571 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 750
LG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T+LGPKL +S + F G D
Sbjct: 58 LGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFD 117
Query: 751 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHS 930
++FW+ DMQ++T++ELK +LY F +HL+MKD S T+ C + E S
Sbjct: 118 TVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVE-TCS 176
Query: 931 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
+Q RQTCVRKSLICAFA+AFIISVMLIAANQ+LRSGM+
Sbjct: 177 NQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 215
>ref|XP_534711.2| PREDICTED: similar to calcium binding protein 1 [Canis familiaris].
Length = 389
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 244 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 303
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 304 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 350
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 325 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 384
Query: 685 TIL 693
++
Sbjct: 385 RMM 387
>ref|XP_541529.2| PREDICTED: similar to calcium binding protein 5 [Canis familiaris].
Length = 173
Score = 82.0 bits (201), Expect = 1e-15
Identities = 46/121 (38%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
+E++E+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDF+
Sbjct: 28 DEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFE 87
Query: 676 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDHLTMK 843
+F+ ++ PKL+ E G +G + F +FD ITL EL+ + + LT +
Sbjct: 88 DFVELMTPKLL--EETAGMIGVQEMRDAFKEFDTNGDGEITLGELQQAMQRLLGEKLTPR 145
Query: 844 D 846
+
Sbjct: 146 E 146
Score = 50.4 bits (119), Expect = 4e-06
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +1
Query: 502 LDEIREAFRVLDRDGNGFISKQELGMAM-RSLGYMPSEVELAIIMQRLDMDGDGQVDFDE 678
+ E+R+AF+ D +G+G I+ EL AM R LG + E++ ++Q D++GDG VDF+E
Sbjct: 107 VQEMRDAFKEFDTNGDGEITLGELQQAMQRLLGEKLTPREISEVVQEADVNGDGTVDFEE 166
Query: 679 FMTIL 693
F+ ++
Sbjct: 167 FVKMM 171
>ref|XP_540815.1| PREDICTED: similar to Calcium-binding protein 4 (CaBP4) [Canis
familiaris].
Length = 277
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Frame = +1
Query: 430 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 609
G LNR G D E + EELDE++ AF D D +G+I ++LG MR+LGYMP+
Sbjct: 115 GPLLNRIF--GKDRE----LGPEELDELQAAFEEFDTDRDGYIGYRDLGDCMRTLGYMPT 168
Query: 610 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 777
E+EL + Q + M G+VDF+EF+ ++ PKL E LG + F +FD
Sbjct: 169 EMELIEVSQHVKMRMGGRVDFEEFVELMSPKL--REETAHMLGIRELRIAFREFDRDKDG 226
Query: 778 RITLEELK 801
RIT+ EL+
Sbjct: 227 RITVAELR 234
>ref|XP_531813.1| PREDICTED: similar to calmodulin 1 isoform 1 [Canis familiaris].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_537537.1| PREDICTED: similar to calmodulin 1 isoform 1 [Canis familiaris].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_533635.1| PREDICTED: similar to calmodulin 1 isoform 1 [Canis familiaris].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_854627.1| PREDICTED: similar to Calcium-binding protein 2 (CaBP2) [Canis
familiaris].
Length = 324
Score = 76.6 bits (187), Expect = 5e-14
Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E++ AF+ DRD +G+I +ELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 74 EEIEELQVAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 130
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHILYHAFRDHLTMKD 846
+F+ ++GPKL+ +E D + F +FD I+L EL+ L + L+ ++
Sbjct: 131 DFVELMGPKLL-AETADMIGVRELRDAFREFDTNGDGCISLAELRAALKVLLGERLSQRE 189
>ref|XP_868454.1| PREDICTED: similar to calmodulin 1 isoform 3 [Canis familiaris].
Length = 149
Score = 74.3 bits (181), Expect = 3e-13
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 687
E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +DF EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 688 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
++ K+ ++ + I F FD I+ EL+H++
Sbjct: 72 MMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,743,767
Number of extensions: 1728269
Number of successful extensions: 7271
Number of sequences better than 1.0e-05: 47
Number of HSP's gapped: 7171
Number of HSP's successfully gapped: 59
Length of query: 460
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 354
Effective length of database: 15,340,888
Effective search space: 5430674352
Effective search space used: 5430674352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007323
(1380 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113656.2| calcium-binding protein 8 isoform 1 [Homo sapie... 450 e-126
Alignment gi|NP_001017440.1| calcium-binding protein 8 isoform 2 [Homo sa... 413 e-115
Alignment gi|NP_872333.1| calcium-binding protein 7 [Homo sapiens]. 248 1e-65
Alignment gi|NP_001028849.1| calcium-binding protein 1 isoform 3 [Homo sa... 84 3e-16
Alignment gi|NP_004267.2| calcium-binding protein 1 isoform 2 [Homo sapie... 84 3e-16
Alignment gi|NP_112482.1| calcium-binding protein 1 isoform 1 [Homo sapie... 84 3e-16
Alignment gi|NP_062829.1| calcium-binding protein 5 [Homo sapiens]. 84 4e-16
Alignment gi|NP_660201.1| calcium-binding protein 4 [Homo sapiens]. 83 5e-16
Alignment gi|NP_057450.2| calcium-binding protein 2 [Homo sapiens]. 78 2e-14
Alignment gi|NP_008819.1| calmodulin isoform 1 [Homo sapiens]. 77 3e-14
>ref|NP_113656.2| calcium-binding protein 8 isoform 1 [Homo sapiens].
Length = 261
Score = 450 bits (1157), Expect = e-126
Identities = 229/261 (87%), Positives = 229/261 (87%)
Frame = +1
Query: 265 MRLPEQPGAGKPENXXXXXXXXXXXXXXXXXXXXXDFPTWEKMPFHHVTAGLLYKGNYLN 444
MRLPEQPG GKPEN DFPTWEKMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGEGKPENEKKGDGGALGGGEEPPRSQAPDFPTWEKMPFHHVTAGLLYKGNYLN 60
Query: 445 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 624
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 625 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 804
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 180
Query: 805 ILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 984
ILYHAFRDHLTMKD SLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 985 MAFIISVMLIAANQILRSGME 1047
MAFIISVMLIAANQILRSGME
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|NP_001017440.1| calcium-binding protein 8 isoform 2 [Homo sapiens].
Length = 219
Score = 413 bits (1061), Expect = e-115
Identities = 209/219 (95%), Positives = 209/219 (95%)
Frame = +1
Query: 391 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 570
MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE
Sbjct: 1 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 60
Query: 571 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 750
LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID
Sbjct: 61 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 120
Query: 751 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHS 930
SIFWQFDMQRITLEELKHILYHAFRDHLTMKD SLNETSGNCQTEFEGVHS
Sbjct: 121 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHS 180
Query: 931 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME
Sbjct: 181 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 219
>ref|NP_872333.1| calcium-binding protein 7 [Homo sapiens].
Length = 215
Score = 248 bits (632), Expect = 1e-65
Identities = 130/219 (59%), Positives = 164/219 (74%)
Frame = +1
Query: 391 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 570
MPFH VTA L+Y+G Y +L + ++ +I +EL+EIREAF+V DRDGNGFISKQE
Sbjct: 1 MPFHPVTAALMYRGIYTVPNLLS---EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQE 57
Query: 571 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 750
LG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T+LGPKL +S + F G D
Sbjct: 58 LGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFD 117
Query: 751 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHS 930
++FW+ DMQ++T++ELK +LY F +HL+MKD S T+ C + E S
Sbjct: 118 TVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVE-TCS 176
Query: 931 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
+Q RQTCVRKSLICAFA+AFIISVMLIAANQ+LRSGM+
Sbjct: 177 NQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 215
>ref|NP_001028849.1| calcium-binding protein 1 isoform 3 [Homo sapiens].
Length = 370
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 225 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 284
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 285 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 331
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 306 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 365
Query: 685 TIL 693
++
Sbjct: 366 RMM 368
>ref|NP_004267.2| calcium-binding protein 1 isoform 2 [Homo sapiens].
Length = 167
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 22 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 81
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 82 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 128
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 103 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 162
Query: 685 TIL 693
++
Sbjct: 163 RMM 165
>ref|NP_112482.1| calcium-binding protein 1 isoform 1 [Homo sapiens].
Length = 227
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 82 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 141
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 142 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 188
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 163 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 222
Query: 685 TIL 693
++
Sbjct: 223 RMM 225
>ref|NP_062829.1| calcium-binding protein 5 [Homo sapiens].
Length = 173
Score = 83.6 bits (205), Expect = 4e-16
Identities = 46/121 (38%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
+E++E+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDFD
Sbjct: 28 DEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFD 87
Query: 676 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDHLTMK 843
+F+ ++ PKL++ G +G + F +FD ITL EL+ + + LT +
Sbjct: 88 DFVELMTPKLLAETA--GMIGVQEMRDAFKEFDTNGDGEITLVELQQAMQRLLGERLTPR 145
Query: 844 D 846
+
Sbjct: 146 E 146
>ref|NP_660201.1| calcium-binding protein 4 [Homo sapiens].
Length = 275
Score = 83.2 bits (204), Expect = 5e-16
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Frame = +1
Query: 430 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 609
G LNR G D E + EELDE++ AF D D +G+IS +ELG MR+LGYMP+
Sbjct: 113 GPLLNRVF--GKDRE----LGPEELDELQAAFEEFDTDRDGYISHRELGDCMRTLGYMPT 166
Query: 610 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 777
E+EL + Q + M G+VDF+EF+ ++GPKL E LG + F +FD
Sbjct: 167 EMELLEVSQHIKMRMGGRVDFEEFVELIGPKL--REETAHMLGVRELRIAFREFDRDRDG 224
Query: 778 RITLEELK 801
RIT+ EL+
Sbjct: 225 RITVAELR 232
>ref|NP_057450.2| calcium-binding protein 2 [Homo sapiens].
Length = 220
Score = 77.8 bits (190), Expect = 2e-14
Identities = 45/120 (37%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E++ AF+ DRD +G+I +ELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 78 EEIEELQVAFQEFDRDRDGYIGCRELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 134
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHILYHAFRDHLTMKD 846
+F+ ++GPKL+ +E D + F +FD RI++ EL+ L + L+ ++
Sbjct: 135 DFVELMGPKLL-AETADMIGVRELRDAFREFDTNGDGRISVGELRAALKALLGERLSQRE 193
Score = 52.8 bits (125), Expect = 8e-07
Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSL-GYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL A+++L G S+ E+ I+Q +D++GDG VDF+EF+
Sbjct: 156 ELRDAFREFDTNGDGRISVGELRAALKALLGERLSQREVDEILQDVDLNGDGLVDFEEFV 215
Query: 685 TIL 693
++
Sbjct: 216 RMM 218
>ref|NP_008819.1| calmodulin isoform 1 [Homo sapiens].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,599,371
Number of extensions: 1701289
Number of successful extensions: 6702
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6624
Number of HSP's successfully gapped: 40
Length of query: 460
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 354
Effective length of database: 14,802,980
Effective search space: 5240254920
Effective search space used: 5240254920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007323
(1380 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851388.1| calcium-binding protein 8 isoform a [Mus muscul... 449 e-126
Alignment gi|NP_067346.1| calcium-binding protein 8 isoform b [Mus muscul... 412 e-115
Alignment gi|NP_620398.1| calcium-binding protein 7 [Mus musculus]. 248 1e-65
Alignment gi|NP_038905.1| calcium-binding protein 5 [Mus musculus]. 85 1e-16
Alignment gi|NP_038907.1| calcium-binding protein 1 [Mus musculus]. 84 3e-16
Alignment gi|NP_081692.1| calmodulin-like protein 3 [Mus musculus]. 79 8e-15
Alignment gi|NP_031616.1| calmodulin [Mus musculus]. 77 2e-14
Alignment gi|NP_031615.1| calmodulin [Mus musculus]. 77 2e-14
Alignment gi|NP_033920.1| calmodulin [Mus musculus]. 77 2e-14
Alignment gi|NP_653115.1| calcium-binding protein 4 [Mus musculus]. 76 7e-14
>ref|NP_851388.1| calcium-binding protein 8 isoform a [Mus musculus].
Length = 261
Score = 449 bits (1155), Expect = e-126
Identities = 228/261 (87%), Positives = 229/261 (87%)
Frame = +1
Query: 265 MRLPEQPGAGKPENXXXXXXXXXXXXXXXXXXXXXDFPTWEKMPFHHVTAGLLYKGNYLN 444
MRLPEQPG GKPEN DFPTWEKMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGDGKPENETKGDQETPERGEEPRRSPAPDFPTWEKMPFHHVTAGLLYKGNYLN 60
Query: 445 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 624
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 625 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 804
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR+TLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRVTLEELKH 180
Query: 805 ILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 984
ILYHAFRDHLTMKD SLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 985 MAFIISVMLIAANQILRSGME 1047
MAFIISVMLIAANQILRSGME
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|NP_067346.1| calcium-binding protein 8 isoform b [Mus musculus].
Length = 219
Score = 412 bits (1060), Expect = e-115
Identities = 208/219 (94%), Positives = 209/219 (95%)
Frame = +1
Query: 391 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 570
MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE
Sbjct: 1 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 60
Query: 571 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 750
LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID
Sbjct: 61 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 120
Query: 751 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHS 930
SIFWQFDMQR+TLEELKHILYHAFRDHLTMKD SLNETSGNCQTEFEGVHS
Sbjct: 121 SIFWQFDMQRVTLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHS 180
Query: 931 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME
Sbjct: 181 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 219
>ref|NP_620398.1| calcium-binding protein 7 [Mus musculus].
Length = 215
Score = 248 bits (632), Expect = 1e-65
Identities = 130/219 (59%), Positives = 164/219 (74%)
Frame = +1
Query: 391 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 570
MPFH VTA L+Y+G Y +L + ++ +I +EL+EIREAF+V DRDGNGFISKQE
Sbjct: 1 MPFHPVTAALMYRGIYTVPNLLS---EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQE 57
Query: 571 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 750
LG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T+LGPKL +S + F G D
Sbjct: 58 LGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFD 117
Query: 751 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXXXXXSLNETSGNCQTEFEGVHS 930
++FW+ DMQ++T++ELK +LY F +HL+MKD S T+ C + E S
Sbjct: 118 TVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVE-TCS 176
Query: 931 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
+Q RQTCVRKSLICAFA+AFIISVMLIAANQ+LRSGM+
Sbjct: 177 NQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 215
>ref|NP_038905.1| calcium-binding protein 5 [Mus musculus].
Length = 173
Score = 85.1 bits (209), Expect = 1e-16
Identities = 47/121 (38%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
+ELDE+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDF+
Sbjct: 28 DELDELREAFLEFDKDQDGFISYKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFE 87
Query: 676 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDHLTMK 843
+F+ ++ PKL++ G +G + F +FD ITL EL+ + + LT +
Sbjct: 88 DFVELMTPKLLAETA--GMIGVQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPR 145
Query: 844 D 846
+
Sbjct: 146 E 146
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +1
Query: 502 LDEIREAFRVLDRDGNGFISKQELGMAM-RSLGYMPSEVELAIIMQRLDMDGDGQVDFDE 678
+ E+R+AF+ D +G+G I+ EL AM R LG + E+A ++Q D++GDG VDF+E
Sbjct: 107 VQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREIAEVVQEADINGDGTVDFEE 166
Query: 679 FMTIL 693
F+ ++
Sbjct: 167 FVKMM 171
>ref|NP_038907.1| calcium-binding protein 1 [Mus musculus].
Length = 227
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 82 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 141
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 142 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 188
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 163 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 222
Query: 685 TIL 693
++
Sbjct: 223 RMM 225
>ref|NP_081692.1| calmodulin-like protein 3 [Mus musculus].
Length = 149
Score = 79.0 bits (193), Expect = 8e-15
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ QELG MRSLG P+E EL ++ +D DG+G V
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQGMVNEIDKDGNGTV 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD ++ EL+H++
Sbjct: 65 DFPEFLTMMSRKMKDTDSEE-----EIREAFRVFDKDGNGFVSAAELRHVM 110
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNGF+S EL M LG S+ E+ ++Q D DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSDEEVDEMIQAADTDGDGQVNYEEFV 143
Query: 685 TILGPK 702
+L K
Sbjct: 144 HMLVSK 149
>ref|NP_031616.1| calmodulin [Mus musculus].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_031615.1| calmodulin [Mus musculus].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_033920.1| calmodulin [Mus musculus].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_653115.1| calcium-binding protein 4 [Mus musculus].
Length = 271
Score = 75.9 bits (185), Expect = 7e-14
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Frame = +1
Query: 430 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 609
G LNR G D E + EEL+E++ AF D D +G+I +ELG MR+LGYMP+
Sbjct: 109 GPLLNRMF--GKDRE----LGPEELEELQAAFEEFDTDQDGYIGYRELGDCMRTLGYMPT 162
Query: 610 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 777
E+EL + Q + M G VDF+EF+ ++ PKL E LG + F +FD
Sbjct: 163 EMELLEVSQHVKMRMGGFVDFEEFVELISPKL--REETAHMLGVRELRIAFREFDKDRDG 220
Query: 778 RITLEELK 801
RIT+ EL+
Sbjct: 221 RITVAELR 228
Score = 48.9 bits (115), Expect = 9e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSE-VELAIIMQRLDMDGDGQVDFDEFM 684
E+R AFR D+D +G I+ EL A +L P E EL +++ +D++GDG +DFDEF+
Sbjct: 206 ELRIAFREFDKDRDGRITVAELRQAAPALLGEPLEGTELDEMLREMDLNGDGTIDFDEFV 265
Query: 685 TIL 693
+L
Sbjct: 266 MML 268
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,646,748
Number of extensions: 1414356
Number of successful extensions: 5322
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5251
Number of HSP's successfully gapped: 37
Length of query: 460
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 355
Effective length of database: 12,463,779
Effective search space: 4424641545
Effective search space used: 4424641545
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007323
(1380 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124479.2| PREDICTED: calcium-binding protein 8-like [S... 337 9e-93
Alignment gi|XP_003133004.2| PREDICTED: hypothetical protein LOC100519801... 182 4e-46
Alignment gi|XP_003359172.1| PREDICTED: calcium-binding protein 1-like is... 83 4e-16
Alignment gi|XP_001928719.1| PREDICTED: calcium-binding protein 1-like is... 83 4e-16
Alignment gi|XP_003122513.1| PREDICTED: calcium-binding protein 4-like [S... 81 2e-15
Alignment gi|XP_001928222.1| PREDICTED: hypothetical protein LOC100154056... 77 2e-14
Alignment gi|XP_003356822.1| PREDICTED: hypothetical protein LOC100154056... 77 2e-14
Alignment gi|XP_003356001.1| PREDICTED: calmodulin [Sus scrofa]. 77 2e-14
Alignment gi|XP_003125211.1| PREDICTED: calmodulin-like [Sus scrofa]. 77 2e-14
Alignment gi|XP_003122500.1| PREDICTED: calcium-binding protein 2-like [S... 77 2e-14
>ref|XP_003124479.2| PREDICTED: calcium-binding protein 8-like [Sus scrofa].
Length = 195
Score = 337 bits (864), Expect = 9e-93
Identities = 171/182 (93%), Positives = 171/182 (93%)
Frame = +1
Query: 502 LDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEF 681
L EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEF
Sbjct: 14 LAEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEF 73
Query: 682 MTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXX 861
MTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKD
Sbjct: 74 MTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDIENII 133
Query: 862 XXXXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSG 1041
SLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSG
Sbjct: 134 INEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSG 193
Query: 1042 ME 1047
ME
Sbjct: 194 ME 195
>ref|XP_003133004.2| PREDICTED: hypothetical protein LOC100519801 [Sus scrofa].
Length = 387
Score = 182 bits (462), Expect = 4e-46
Identities = 98/180 (54%), Positives = 121/180 (67%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 687
EIREAF+V DRDGNGFISKQELG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T
Sbjct: 235 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 294
Query: 688 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDXXXXXXX 867
+LGPKL +S + F G D++FW+ DMQ++T++ELK +LY F +HL+MKD
Sbjct: 295 LLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDI------ 348
Query: 868 XXXSLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 1047
+ AFA+AFIISVMLIAANQ+LRSGM+
Sbjct: 349 ---------------------ENIIMTXXXXXXXXXAFAIAFIISVMLIAANQVLRSGMK 387
>ref|XP_003359172.1| PREDICTED: calcium-binding protein 1-like isoform 2 [Sus scrofa].
Length = 167
Score = 82.8 bits (203), Expect = 4e-16
Identities = 42/108 (38%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAF+ D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 22 EEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 81
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 82 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 128
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 103 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 162
Query: 685 TIL 693
++
Sbjct: 163 RMM 165
>ref|XP_001928719.1| PREDICTED: calcium-binding protein 1-like isoform 1 [Sus scrofa].
Length = 226
Score = 82.8 bits (203), Expect = 4e-16
Identities = 42/108 (38%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E+REAF+ D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 81 EEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 140
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 141 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 187
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 162 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 221
Query: 685 TIL 693
++
Sbjct: 222 RMM 224
>ref|XP_003122513.1| PREDICTED: calcium-binding protein 4-like [Sus scrofa].
Length = 273
Score = 80.9 bits (198), Expect = 2e-15
Identities = 55/128 (42%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Frame = +1
Query: 430 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 609
G LNR G D E + EELDE+R AF D D +G I +ELG MR+LGYMP+
Sbjct: 111 GPLLNRIF--GKDRE----LGPEELDELRAAFEEFDTDHDGHIGYRELGECMRTLGYMPT 164
Query: 610 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 777
E+EL + Q + M G+VDF+EF+ ++GPKL E LG + F +FD
Sbjct: 165 EMELIEVSQHVKMRMGGRVDFEEFVEMMGPKL--REETAHMLGVRELRIAFREFDRDRDG 222
Query: 778 RITLEELK 801
RIT+ EL+
Sbjct: 223 RITVAELR 230
>ref|XP_001928222.1| PREDICTED: hypothetical protein LOC100154056 [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003356822.1| PREDICTED: hypothetical protein LOC100154056 [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003356001.1| PREDICTED: calmodulin [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003125211.1| PREDICTED: calmodulin-like [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +1
Query: 487 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 666
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 667 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 810
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +1
Query: 505 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 685 TILGPK 702
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003122500.1| PREDICTED: calcium-binding protein 2-like [Sus scrofa].
Length = 308
Score = 77.0 bits (188), Expect = 2e-14
Identities = 45/120 (37%), Positives = 74/120 (61%), Gaps = 3/120 (2%)
Frame = +1
Query: 496 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 675
EE++E++ AF+ DRD +G+I +ELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 166 EEIEELQAAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 222
Query: 676 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHILYHAFRDHLTMKD 846
+F+ ++GPKL+ +E D + F +FD I+L EL+ L + L+ ++
Sbjct: 223 DFVELMGPKLL-AETADMIGVRELRDAFREFDSNGDGCISLGELRAALKALLGERLSQRE 281
Score = 52.0 bits (123), Expect = 8e-07
Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +1
Query: 508 EIREAFRVLDRDGNGFISKQELGMAMRSL-GYMPSEVELAIIMQRLDMDGDGQVDFDEFM 684
E+R+AFR D +G+G IS EL A+++L G S+ E+ I++ +D++GDG VDF+EF+
Sbjct: 244 ELRDAFREFDSNGDGCISLGELRAALKALLGERLSQREVDEILRDIDLNGDGLVDFEEFV 303
Query: 685 TIL 693
++
Sbjct: 304 RMM 306
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 36,471,869
Number of extensions: 1092185
Number of successful extensions: 4601
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 4548
Number of HSP's successfully gapped: 36
Length of query: 460
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 358
Effective length of database: 8,804,438
Effective search space: 3151988804
Effective search space used: 3151988804
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007323
(1380 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 706 0.0
Sscrofa_Chr14 111 1e-21
gb|JH118887.1| Sus scrofa unplaced genomic scaffold ChrUScaf3150 100 4e-18
>Sscrofa_Chr03
|| Length = 144787322
Score = 706 bits (356), Expect = 0.0
Identities = 438/462 (94%), Gaps = 4/462 (0%)
Strand = Plus / Plus
Query: 922 gtgcattcccagaagcagaaccggcagacctgcgtccggaagagcctcatctgcgccttc 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15708440 gtgcattcccagaagcagaaccggcagacctgcgtccggaagagcctcatctgcgccttc 15708499
Query: 982 gccatggccttcatcataagcgtcatgctgatcgcggccaaccagatcctccggagcggc 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15708500 gccatggccttcatcataagcgtcatgctgatcgcggccaaccagatcctccggagcggc 15708559
Query: 1042 atggagtagcagcctccccagcagctgccttcccggctcccgcatgtgcttgccctgcgg 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15708560 atggagtagcagcctccccagcagctgccttcccggctcccgcatgtgcttgccctgcgg 15708619
Query: 1102 gcagacccctcctccgc-aaagcagagacgggaccgtgcagatgcgagcacagtccagcg 1160
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15708620 gcagacccctcctccgcaaaagcagagacgggaccgtgcagatgcgagcacagtccagcg 15708679
Query: 1161 aagaacccaggggtgcagtgcaccccgtggttgtgcaaacccacttcatccccttggcag 1220
||||||||| || ||||||||| |||||| | |||||||||||||||||||||||||||
Sbjct: 15708680 aagaacccaaggttgcagtgcaacccgtgttgttgcaaacccacttcatccccttggcag 15708739
Query: 1221 gtacacaaaagggctgtctttcatgcttttatggtcctgttccctaatgcaataaataag 1280
|||||||||||||||||||| ||||||| |||||| |||| ||||||||||||||||||
Sbjct: 15708740 gtacacaaaagggctgtcttcaatgctttaatggtcttgtttcctaatgcaataaataag 15708799
Query: 1281 cccaggag-tccagatgacggcttcgacccactgtangaactctccagagaaactgcatt 1339
||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 15708800 -ccaggagttccagatgacggcttcgaccacctgtaggaactctccagagaaactgcatt 15708858
Query: 1340 tncatctcgaantncnnac-gccatccaggttggtggcgtaa 1380
| ||||||| | | | || ||||||||||||||||||||||
Sbjct: 15708859 ttcatctcggaattccaacggccatccaggttggtggcgtaa 15708900
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 1 ggcagagcatccggcccagccagggtctggcagccttcagtgggctccaaggcgccaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16201416 ggcagagcatccggcccagccagggtctggcagccttcagtgggctccaaggcgccaggc 16201357
Query: 61 tggggccagccccggagtgggcttctggctctgtagacactgcaaatctaccttcttagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16201356 tggggccagccccggagtgggcttctggctctgtagacactgcaaatctaccttcttagt 16201297
Query: 121 gcaactagcaggatccagaccactttcgcagttctggaaaaagggcttgggaccgcctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16201296 gcaactagcaggatccagaccactttcgcagttctggaaaaagggcttgggaccgcctgt 16201237
Query: 181 aggaacacag 190
||||||||||
Sbjct: 16201236 aggaacacag 16201227
Score = 317 bits (160), Expect = 9e-84
Identities = 160/160 (100%)
Strand = Plus / Plus
Query: 763 cagtttgacatgcagaggataactctggaagagctgaagcacatcctctatcacgccttc 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15694499 cagtttgacatgcagaggataactctggaagagctgaagcacatcctctatcacgccttc 15694558
Query: 823 cgggaccacttaaccatgaaagacattgagaatatcattatcaatgaggaggagagcctg 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15694559 cgggaccacttaaccatgaaagacattgagaatatcattatcaatgaggaggagagcctg 15694618
Query: 883 aacgagacctcggggaactgccagacagagttcgagggcg 922
||||||||||||||||||||||||||||||||||||||||
Sbjct: 15694619 aacgagacctcggggaactgccagacagagttcgagggcg 15694658
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 508 gaaatccgagaggcctttcgggttctggaccgagacggcaatggcttcatctccaagcag 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15917395 gaaatccgagaggcctttcgggttctggaccgagacggcaatggcttcatctccaagcag 15917336
Query: 568 gagctgggaatggccatgcgatctttggggtacatgccgagtgaggtggagctggccatc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15917335 gagctgggaatggccatgcgatctttggggtacatgccgagtgaggtggagctggccatc 15917276
Query: 628 atcatgcagcgtctggacatggacgg 653
||||||||||||||||||||||||||
Sbjct: 15917275 atcatgcagcgtctggacatggacgg 15917250
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 383 gggagaagatgcctttccaccatgtgaccgctggcctgttgtacaaagggaattacctca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16064038 gggagaagatgcctttccaccatgtgaccgctggcctgttgtacaaagggaattacctca 16063979
Query: 443 accgatctctctctgctggcagcgacagcgagcagctggccaacatctctgtggaggagc 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16063978 accgatctctctctgctggcagcgacagcgagcagctggccaacatctctgtggaggagc 16063919
Query: 503 ttgacg 508
||||||
Sbjct: 16063918 ttgacg 16063913
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 188 cagagtctcagtgtctccgctgacgttcccttgatgggctcacaaatctttctgagaaca 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155536 cagagtctcagtgtctccgctgacgttcccttgatgggctcacaaatctttctgagaaca 16155477
Query: 248 tcgccctggaccccccgatgcggctgcccgagcaacccggagcagggaagcctgagaat 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155476 tcgccctggaccccccgatgcggctgcccgagcaacccggagcagggaagcctgagaat 16155418
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 652 ggggatggccaggtggattttgatgaattcatgacaattcttggccccaaactggtgtct 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866056 ggggatggccaggtggattttgatgaattcatgacaattcttggccccaaactggtgtct 15865997
Query: 712 tcagaaggtcgcgatggttttcttggaaacacaatagacagcatattctggcag 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15865996 tcagaaggtcgcgatggttttcttggaaacacaatagacagcatattctggcag 15865943
>Sscrofa_Chr14
|| Length = 153851969
Score = 111 bits (56), Expect = 1e-21
Identities = 83/92 (90%)
Strand = Plus / Plus
Query: 935 agcagaaccggcagacctgcgtccggaagagcctcatctgcgccttcgccatggccttca 994
|||||| ||| ||||| ||||| || |||||||| ||||||||||||||||| |||||||
Sbjct: 49791254 agcagatccgccagacgtgcgtgcgcaagagcctgatctgcgccttcgccatcgccttca 49791313
Query: 995 tcataagcgtcatgctgatcgcggccaaccag 1026
|||| ||||||||||| |||||||||||||||
Sbjct: 49791314 tcatcagcgtcatgctcatcgcggccaaccag 49791345
Score = 99.6 bits (50), Expect = 4e-18
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 544 ggcaatggcttcatctccaagcaggagctgggaatggccatgcgatctttggggtacatg 603
|||||||||||||||||||||||||||||||| | |||||||| || |||| ||||||
Sbjct: 49789401 ggcaatggcttcatctccaagcaggagctgggcacagccatgcgctccctgggctacatg 49789460
Query: 604 ccgagtgaggtggagctggccatcatcatgcagcgtctggacatggacgg 653
|| | |||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct: 49789461 cccaatgaggtggagctggaggttatcatccagcggctggacatggacgg 49789510
>gb|JH118887.1| Sus scrofa unplaced genomic scaffold ChrUScaf3150
Length = 151476
Score = 99.6 bits (50), Expect = 4e-18
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 544 ggcaatggcttcatctccaagcaggagctgggaatggccatgcgatctttggggtacatg 603
|||||||||||||||||||||||||||||||| | |||||||| || |||| ||||||
Sbjct: 58192 ggcaatggcttcatctccaagcaggagctgggcacagccatgcgctccctgggctacatg 58251
Query: 604 ccgagtgaggtggagctggccatcatcatgcagcgtctggacatggacgg 653
|| | |||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct: 58252 cccaatgaggtggagctggaggttatcatccagcggctggacatggacgg 58301
Score = 77.8 bits (39), Expect = 1e-11
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 976 gccttcgccatggccttcatcataagcgtcatgctgatcgcggccaaccag 1026
||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 60337 gccttcgccatcgccttcatcatcagcgtcatgctcatcgcggccaaccag 60387
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,648,747
Number of extensions: 173
Number of successful extensions: 173
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 11
Length of query: 1380
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1359
Effective length of database: 2,808,413,156
Effective search space: 3816633479004
Effective search space used: 3816633479004
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)