Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007326
(1356 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193044.1| calcium-binding protein 8 [Bos taurus]. 437 e-123
Alignment gi|XP_002698123.1| PREDICTED: calneuron 1-like [Bos taurus]. 437 e-123
Alignment gi|XP_002707748.1| PREDICTED: calcium binding protein 7-like [B... 209 6e-54
Alignment gi|XP_873138.2| PREDICTED: calcium binding protein 7-like [Bos ... 209 6e-54
Alignment gi|NP_777153.1| calcium-binding protein 5 [Bos taurus]. 85 2e-16
Alignment gi|NP_776679.1| calcium-binding protein 1 [Bos taurus]. 84 3e-16
Alignment gi|NP_776681.1| calcium-binding protein 4 [Bos taurus]. 82 1e-15
Alignment gi|NP_776680.1| calcium-binding protein 2 [Bos taurus]. 77 3e-14
Alignment gi|NP_001229516.1| calmodulin 2 (phosphorylase kinase, delta) [... 77 3e-14
Alignment gi|NP_001039714.1| calmodulin 3 [Bos taurus]. 77 3e-14
>ref|NP_001193044.1| calcium-binding protein 8 [Bos taurus].
Length = 261
Score = 437 bits (1125), Expect = e-123
Identities = 222/261 (85%), Positives = 227/261 (86%)
Frame = +2
Query: 476 MRLPEQPGAGKPENXXXXXXXXXXXXXXPQRSRAPDFPTWEKMPFHHVTAGLLYKGNYLN 655
MRLPEQPG GKPEN P R++APDFPTW+KMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGEGKPENEEKGGRGAPGGGEEPPRTQAPDFPTWQKMPFHHVTAGLLYKGNYLN 60
Query: 656 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 835
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 836 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 1015
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 180
Query: 1016 ILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFA 1195
ILYHAFRD LTM S +ETSGNCQTEFEGVHSQKQNRQTCVRK LICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 1196 MAFINSVMLIAAXQIXRSGMK 1258
MAFI SVMLIAA QI RSGM+
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|XP_002698123.1| PREDICTED: calneuron 1-like [Bos taurus].
Length = 261
Score = 437 bits (1125), Expect = e-123
Identities = 222/261 (85%), Positives = 227/261 (86%)
Frame = +2
Query: 476 MRLPEQPGAGKPENXXXXXXXXXXXXXXPQRSRAPDFPTWEKMPFHHVTAGLLYKGNYLN 655
MRLPEQPG GKPEN P R++APDFPTW+KMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGEGKPENEEKGGRGAPGGGEEPPRTQAPDFPTWQKMPFHHVTAGLLYKGNYLN 60
Query: 656 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 835
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 836 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 1015
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 180
Query: 1016 ILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFA 1195
ILYHAFRD LTM S +ETSGNCQTEFEGVHSQKQNRQTCVRK LICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 1196 MAFINSVMLIAAXQIXRSGMK 1258
MAFI SVMLIAA QI RSGM+
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|XP_002707748.1| PREDICTED: calcium binding protein 7-like [Bos taurus].
Length = 601
Score = 209 bits (531), Expect = 6e-54
Identities = 109/180 (60%), Positives = 133/180 (73%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 898
EIREAF+V DRDGNGFISKQELG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T
Sbjct: 423 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 482
Query: 899 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXX 1078
+LGPKL +S + F G D++FW+ DMQ++T++ELK +LY F + L+M
Sbjct: 483 LLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMT 542
Query: 1079 XXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
S T+ C + E S +Q RQTCVRK LICAFA+AFI SVMLIAA Q+ RSGMK
Sbjct: 543 EEESHLGTAEECPVDVE-TCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 601
>ref|XP_873138.2| PREDICTED: calcium binding protein 7-like [Bos taurus].
Length = 363
Score = 209 bits (531), Expect = 6e-54
Identities = 109/180 (60%), Positives = 133/180 (73%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 898
EIREAF+V DRDGNGFISKQELG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T
Sbjct: 185 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 244
Query: 899 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXX 1078
+LGPKL +S + F G D++FW+ DMQ++T++ELK +LY F + L+M
Sbjct: 245 LLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMT 304
Query: 1079 XXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
S T+ C + E S +Q RQTCVRK LICAFA+AFI SVMLIAA Q+ RSGMK
Sbjct: 305 EEESHLGTAEECPVDVE-TCSNQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 363
>ref|NP_777153.1| calcium-binding protein 5 [Bos taurus].
Length = 173
Score = 84.7 bits (208), Expect = 2e-16
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
+E++E+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDFD
Sbjct: 28 DEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFD 87
Query: 887 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDQLT 1048
+F+ ++ PKL++ G +G + F +FD ITL EL+ + D+LT
Sbjct: 88 DFVELMTPKLLAETA--GMIGVQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLT 143
Score = 50.8 bits (120), Expect = 3e-06
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +2
Query: 713 LDEIREAFRVLDRDGNGFISKQELGMAM-RSLGYMPSEVELAIIMQRLDMDGDGQVDFDE 889
+ E+R+AF+ D +G+G I+ EL AM R LG + E++ ++Q D++GDG VDF+E
Sbjct: 107 VQEMRDAFKEFDANGDGEITLGELQQAMQRLLGDKLTSQEISEVVQEADINGDGTVDFEE 166
Query: 890 FMTIL 904
F+ ++
Sbjct: 167 FVKMM 171
>ref|NP_776679.1| calcium-binding protein 1 [Bos taurus].
Length = 226
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 81 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 140
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 141 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 187
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 162 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 221
Query: 896 TIL 904
++
Sbjct: 222 RMM 224
>ref|NP_776681.1| calcium-binding protein 4 [Bos taurus].
Length = 279
Score = 81.6 bits (200), Expect = 1e-15
Identities = 66/185 (35%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Frame = +2
Query: 473 PMRLPEQPGAGKPENXXXXXXXXXXXXXXPQRSR-APDFPTWEKMPFHHVTAGLLYKGNY 649
PM+ PE PG+ K + P S AP + P A G
Sbjct: 64 PMQGPEAPGSSKNPSRTREGQEGPI----PSASGLAPRRQSHRHRPGPQHDAAQRMYGPL 119
Query: 650 LNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVE 829
LNR G D E + EELDE++ AF D D +G+I ++LG MR+LGYMP+E+E
Sbjct: 120 LNRIF--GKDRE----LGPEELDELQAAFEEFDTDHDGYIGYRDLGECMRTLGYMPTEME 173
Query: 830 LAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RIT 997
L + Q + M G+VDF+EF+ ++GPKL E LG + F +FD RIT
Sbjct: 174 LIEVSQHVKMRMGGRVDFEEFVEMMGPKL--REETAHMLGLRELRIAFREFDRDRDGRIT 231
Query: 998 LEELK 1012
+ EL+
Sbjct: 232 VAELR 236
>ref|NP_776680.1| calcium-binding protein 2 [Bos taurus].
Length = 163
Score = 77.4 bits (189), Expect = 3e-14
Identities = 46/117 (39%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E++ AF+ DRD +G+I QELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 21 EEIEELQAAFQEFDRDRDGYIGYQELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 77
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHILYHAFRDQLT 1048
+F+ ++GPKL+ +E D + F +FD I+L EL+ L ++L+
Sbjct: 78 DFVELMGPKLL-AETADMIGVRELRDAFREFDTNGDGCISLGELRAALKALLGERLS 133
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSL-GYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL A+++L G S+ E+ I++ +D++GDG VDF+EF+
Sbjct: 99 ELRDAFREFDTNGDGCISLGELRAALKALLGERLSQREVDEILRDIDLNGDGLVDFEEFV 158
Query: 896 TIL 904
++
Sbjct: 159 RMM 161
>ref|NP_001229516.1| calmodulin 2 (phosphorylase kinase, delta) [Bos taurus].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_001039714.1| calmodulin 3 [Bos taurus].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,813,220
Number of extensions: 1638692
Number of successful extensions: 6586
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6511
Number of HSP's successfully gapped: 40
Length of query: 452
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,174,046
Effective search space: 4904219916
Effective search space used: 4904219916
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007326
(1356 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848809.1| PREDICTED: similar to calneuron 1 [Canis famili... 310 3e-84
Alignment gi|XP_543472.1| PREDICTED: similar to calcium binding protein 7... 232 5e-61
Alignment gi|XP_534711.2| PREDICTED: similar to calcium binding protein 1... 84 3e-16
Alignment gi|XP_541529.2| PREDICTED: similar to calcium binding protein 5... 82 1e-15
Alignment gi|XP_540815.1| PREDICTED: similar to Calcium-binding protein 4... 77 3e-14
Alignment gi|XP_531813.1| PREDICTED: similar to calmodulin 1 isoform 1 [C... 77 3e-14
Alignment gi|XP_537537.1| PREDICTED: similar to calmodulin 1 isoform 1 [C... 77 3e-14
Alignment gi|XP_533635.1| PREDICTED: similar to calmodulin 1 isoform 1 [C... 77 3e-14
Alignment gi|XP_854627.1| PREDICTED: similar to Calcium-binding protein 2... 75 1e-13
Alignment gi|XP_868454.1| PREDICTED: similar to calmodulin 1 isoform 3 [C... 74 2e-13
>ref|XP_848809.1| PREDICTED: similar to calneuron 1 [Canis familiaris].
Length = 213
Score = 310 bits (793), Expect = 3e-84
Identities = 159/180 (88%), Positives = 160/180 (88%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 898
EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT
Sbjct: 34 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 93
Query: 899 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXX 1078
ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRD LTM
Sbjct: 94 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDIENIIIN 153
Query: 1079 XXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
S ETS NCQTEFEGVHSQKQNRQTCVRK LICAFAMAFI SVMLIAA QI RSGM+
Sbjct: 154 EEESLQETSENCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 213
>ref|XP_543472.1| PREDICTED: similar to calcium binding protein 7 [Canis familiaris].
Length = 215
Score = 232 bits (592), Expect = 5e-61
Identities = 124/219 (56%), Positives = 157/219 (71%)
Frame = +2
Query: 602 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 781
MPFH VTA L+Y+G Y +L + ++ +I +EL+EIREAF+V DRDGNGFISKQE
Sbjct: 1 MPFHPVTAALMYRGIYTVPNLLS---EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQE 57
Query: 782 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 961
LG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T+LGPKL +S + F G D
Sbjct: 58 LGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFD 117
Query: 962 SIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHS 1141
++FW+ DMQ++T++ELK +LY F + L+M S T+ C + E S
Sbjct: 118 TVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVE-TCS 176
Query: 1142 QKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
+Q RQTCVRK LICAFA+AFI SVMLIAA Q+ RSGMK
Sbjct: 177 NQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 215
>ref|XP_534711.2| PREDICTED: similar to calcium binding protein 1 [Canis familiaris].
Length = 389
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 244 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 303
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 304 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 350
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 325 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 384
Query: 896 TIL 904
++
Sbjct: 385 RMM 387
>ref|XP_541529.2| PREDICTED: similar to calcium binding protein 5 [Canis familiaris].
Length = 173
Score = 82.0 bits (201), Expect = 1e-15
Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
+E++E+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDF+
Sbjct: 28 DEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFE 87
Query: 887 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDQLT 1048
+F+ ++ PKL+ E G +G + F +FD ITL EL+ + ++LT
Sbjct: 88 DFVELMTPKLL--EETAGMIGVQEMRDAFKEFDTNGDGEITLGELQQAMQRLLGEKLT 143
Score = 50.4 bits (119), Expect = 4e-06
Identities = 26/65 (40%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +2
Query: 713 LDEIREAFRVLDRDGNGFISKQELGMAM-RSLGYMPSEVELAIIMQRLDMDGDGQVDFDE 889
+ E+R+AF+ D +G+G I+ EL AM R LG + E++ ++Q D++GDG VDF+E
Sbjct: 107 VQEMRDAFKEFDTNGDGEITLGELQQAMQRLLGEKLTPREISEVVQEADVNGDGTVDFEE 166
Query: 890 FMTIL 904
F+ ++
Sbjct: 167 FVKMM 171
>ref|XP_540815.1| PREDICTED: similar to Calcium-binding protein 4 (CaBP4) [Canis
familiaris].
Length = 277
Score = 77.4 bits (189), Expect = 3e-14
Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Frame = +2
Query: 641 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 820
G LNR G D E + EELDE++ AF D D +G+I ++LG MR+LGYMP+
Sbjct: 115 GPLLNRIF--GKDRE----LGPEELDELQAAFEEFDTDRDGYIGYRDLGDCMRTLGYMPT 168
Query: 821 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 988
E+EL + Q + M G+VDF+EF+ ++ PKL E LG + F +FD
Sbjct: 169 EMELIEVSQHVKMRMGGRVDFEEFVELMSPKL--REETAHMLGIRELRIAFREFDRDKDG 226
Query: 989 RITLEELK 1012
RIT+ EL+
Sbjct: 227 RITVAELR 234
>ref|XP_531813.1| PREDICTED: similar to calmodulin 1 isoform 1 [Canis familiaris].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_537537.1| PREDICTED: similar to calmodulin 1 isoform 1 [Canis familiaris].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_533635.1| PREDICTED: similar to calmodulin 1 isoform 1 [Canis familiaris].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_854627.1| PREDICTED: similar to Calcium-binding protein 2 (CaBP2) [Canis
familiaris].
Length = 324
Score = 75.5 bits (184), Expect = 1e-13
Identities = 44/108 (40%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E++ AF+ DRD +G+I +ELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 74 EEIEELQVAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 130
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+L EL+ L
Sbjct: 131 DFVELMGPKLL-AETADMIGVRELRDAFREFDTNGDGCISLAELRAAL 177
>ref|XP_868454.1| PREDICTED: similar to calmodulin 1 isoform 3 [Canis familiaris].
Length = 149
Score = 74.3 bits (181), Expect = 2e-13
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 3/104 (2%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 898
E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +DF EF+T
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 899 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
++ K+ ++ + I F FD I+ EL+H++
Sbjct: 72 MMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,920,651
Number of extensions: 1638480
Number of successful extensions: 6892
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 6789
Number of HSP's successfully gapped: 58
Length of query: 452
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 346
Effective length of database: 15,340,888
Effective search space: 5307947248
Effective search space used: 5307947248
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007326
(1356 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_113656.2| calcium-binding protein 8 isoform 1 [Homo sapie... 440 e-123
Alignment gi|NP_001017440.1| calcium-binding protein 8 isoform 2 [Homo sa... 390 e-108
Alignment gi|NP_872333.1| calcium-binding protein 7 [Homo sapiens]. 232 5e-61
Alignment gi|NP_001028849.1| calcium-binding protein 1 isoform 3 [Homo sa... 84 3e-16
Alignment gi|NP_004267.2| calcium-binding protein 1 isoform 2 [Homo sapie... 84 3e-16
Alignment gi|NP_112482.1| calcium-binding protein 1 isoform 1 [Homo sapie... 84 3e-16
Alignment gi|NP_062829.1| calcium-binding protein 5 [Homo sapiens]. 83 5e-16
Alignment gi|NP_660201.1| calcium-binding protein 4 [Homo sapiens]. 83 5e-16
Alignment gi|NP_008819.1| calmodulin isoform 1 [Homo sapiens]. 77 3e-14
Alignment gi|NP_001734.1| calmodulin [Homo sapiens]. 77 3e-14
>ref|NP_113656.2| calcium-binding protein 8 isoform 1 [Homo sapiens].
Length = 261
Score = 440 bits (1131), Expect = e-123
Identities = 224/261 (85%), Positives = 227/261 (86%)
Frame = +2
Query: 476 MRLPEQPGAGKPENXXXXXXXXXXXXXXPQRSRAPDFPTWEKMPFHHVTAGLLYKGNYLN 655
MRLPEQPG GKPEN P RS+APDFPTWEKMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGEGKPENEKKGDGGALGGGEEPPRSQAPDFPTWEKMPFHHVTAGLLYKGNYLN 60
Query: 656 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 835
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 836 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 1015
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 180
Query: 1016 ILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFA 1195
ILYHAFRD LTM S +ETSGNCQTEFEGVHSQKQNRQTCVRK LICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 1196 MAFINSVMLIAAXQIXRSGMK 1258
MAFI SVMLIAA QI RSGM+
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|NP_001017440.1| calcium-binding protein 8 isoform 2 [Homo sapiens].
Length = 219
Score = 390 bits (1001), Expect = e-108
Identities = 199/219 (90%), Positives = 201/219 (91%)
Frame = +2
Query: 602 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 781
MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE
Sbjct: 1 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 60
Query: 782 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 961
LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID
Sbjct: 61 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 120
Query: 962 SIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHS 1141
SIFWQFDMQRITLEELKHILYHAFRD LTM S +ETSGNCQTEFEGVHS
Sbjct: 121 SIFWQFDMQRITLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHS 180
Query: 1142 QKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
QKQNRQTCVRK LICAFAMAFI SVMLIAA QI RSGM+
Sbjct: 181 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 219
>ref|NP_872333.1| calcium-binding protein 7 [Homo sapiens].
Length = 215
Score = 232 bits (592), Expect = 5e-61
Identities = 124/219 (56%), Positives = 157/219 (71%)
Frame = +2
Query: 602 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 781
MPFH VTA L+Y+G Y +L + ++ +I +EL+EIREAF+V DRDGNGFISKQE
Sbjct: 1 MPFHPVTAALMYRGIYTVPNLLS---EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQE 57
Query: 782 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 961
LG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T+LGPKL +S + F G D
Sbjct: 58 LGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFD 117
Query: 962 SIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHS 1141
++FW+ DMQ++T++ELK +LY F + L+M S T+ C + E S
Sbjct: 118 TVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVE-TCS 176
Query: 1142 QKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
+Q RQTCVRK LICAFA+AFI SVMLIAA Q+ RSGMK
Sbjct: 177 NQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 215
>ref|NP_001028849.1| calcium-binding protein 1 isoform 3 [Homo sapiens].
Length = 370
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 225 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 284
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 285 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 331
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 306 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 365
Query: 896 TIL 904
++
Sbjct: 366 RMM 368
>ref|NP_004267.2| calcium-binding protein 1 isoform 2 [Homo sapiens].
Length = 167
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 22 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 81
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 82 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 128
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 103 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 162
Query: 896 TIL 904
++
Sbjct: 163 RMM 165
>ref|NP_112482.1| calcium-binding protein 1 isoform 1 [Homo sapiens].
Length = 227
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 82 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 141
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 142 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 188
Score = 54.3 bits (129), Expect = 3e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 163 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 222
Query: 896 TIL 904
++
Sbjct: 223 RMM 225
>ref|NP_062829.1| calcium-binding protein 5 [Homo sapiens].
Length = 173
Score = 83.2 bits (204), Expect = 5e-16
Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
+E++E+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDFD
Sbjct: 28 DEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELIELGQQIRMNLGGRVDFD 87
Query: 887 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDQLT 1048
+F+ ++ PKL++ G +G + F +FD ITL EL+ + ++LT
Sbjct: 88 DFVELMTPKLLAETA--GMIGVQEMRDAFKEFDTNGDGEITLVELQQAMQRLLGERLT 143
>ref|NP_660201.1| calcium-binding protein 4 [Homo sapiens].
Length = 275
Score = 83.2 bits (204), Expect = 5e-16
Identities = 55/128 (42%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Frame = +2
Query: 641 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 820
G LNR G D E + EELDE++ AF D D +G+IS +ELG MR+LGYMP+
Sbjct: 113 GPLLNRVF--GKDRE----LGPEELDELQAAFEEFDTDRDGYISHRELGDCMRTLGYMPT 166
Query: 821 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 988
E+EL + Q + M G+VDF+EF+ ++GPKL E LG + F +FD
Sbjct: 167 EMELLEVSQHIKMRMGGRVDFEEFVELIGPKL--REETAHMLGVRELRIAFREFDRDRDG 224
Query: 989 RITLEELK 1012
RIT+ EL+
Sbjct: 225 RITVAELR 232
>ref|NP_008819.1| calmodulin isoform 1 [Homo sapiens].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_001734.1| calmodulin [Homo sapiens].
Length = 149
Score = 77.4 bits (189), Expect = 3e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 5e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,679,832
Number of extensions: 1594507
Number of successful extensions: 6350
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6273
Number of HSP's successfully gapped: 40
Length of query: 452
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 346
Effective length of database: 14,802,980
Effective search space: 5121831080
Effective search space used: 5121831080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007326
(1356 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851388.1| calcium-binding protein 8 isoform a [Mus muscul... 439 e-123
Alignment gi|NP_067346.1| calcium-binding protein 8 isoform b [Mus muscul... 389 e-108
Alignment gi|NP_620398.1| calcium-binding protein 7 [Mus musculus]. 232 4e-61
Alignment gi|NP_038905.1| calcium-binding protein 5 [Mus musculus]. 85 1e-16
Alignment gi|NP_038907.1| calcium-binding protein 1 [Mus musculus]. 84 3e-16
Alignment gi|NP_081692.1| calmodulin-like protein 3 [Mus musculus]. 79 8e-15
Alignment gi|NP_031616.1| calmodulin [Mus musculus]. 77 2e-14
Alignment gi|NP_031615.1| calmodulin [Mus musculus]. 77 2e-14
Alignment gi|NP_033920.1| calmodulin [Mus musculus]. 77 2e-14
Alignment gi|NP_653115.1| calcium-binding protein 4 [Mus musculus]. 76 7e-14
>ref|NP_851388.1| calcium-binding protein 8 isoform a [Mus musculus].
Length = 261
Score = 439 bits (1128), Expect = e-123
Identities = 223/261 (85%), Positives = 227/261 (86%)
Frame = +2
Query: 476 MRLPEQPGAGKPENXXXXXXXXXXXXXXPQRSRAPDFPTWEKMPFHHVTAGLLYKGNYLN 655
MRLPEQPG GKPEN P+RS APDFPTWEKMPFHHVTAGLLYKGNYLN
Sbjct: 1 MRLPEQPGDGKPENETKGDQETPERGEEPRRSPAPDFPTWEKMPFHHVTAGLLYKGNYLN 60
Query: 656 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 835
RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA
Sbjct: 61 RSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELA 120
Query: 836 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKH 1015
IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR+TLEELKH
Sbjct: 121 IIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRVTLEELKH 180
Query: 1016 ILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFA 1195
ILYHAFRD LTM S +ETSGNCQTEFEGVHSQKQNRQTCVRK LICAFA
Sbjct: 181 ILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFA 240
Query: 1196 MAFINSVMLIAAXQIXRSGMK 1258
MAFI SVMLIAA QI RSGM+
Sbjct: 241 MAFIISVMLIAANQILRSGME 261
>ref|NP_067346.1| calcium-binding protein 8 isoform b [Mus musculus].
Length = 219
Score = 389 bits (1000), Expect = e-108
Identities = 198/219 (90%), Positives = 201/219 (91%)
Frame = +2
Query: 602 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 781
MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE
Sbjct: 1 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 60
Query: 782 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 961
LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID
Sbjct: 61 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 120
Query: 962 SIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHS 1141
SIFWQFDMQR+TLEELKHILYHAFRD LTM S +ETSGNCQTEFEGVHS
Sbjct: 121 SIFWQFDMQRVTLEELKHILYHAFRDHLTMKDIENIIINEEESLNETSGNCQTEFEGVHS 180
Query: 1142 QKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
QKQNRQTCVRK LICAFAMAFI SVMLIAA QI RSGM+
Sbjct: 181 QKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSGME 219
>ref|NP_620398.1| calcium-binding protein 7 [Mus musculus].
Length = 215
Score = 232 bits (592), Expect = 4e-61
Identities = 124/219 (56%), Positives = 157/219 (71%)
Frame = +2
Query: 602 MPFHHVTAGLLYKGNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQE 781
MPFH VTA L+Y+G Y +L + ++ +I +EL+EIREAF+V DRDGNGFISKQE
Sbjct: 1 MPFHPVTAALMYRGIYTVPNLLS---EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQE 57
Query: 782 LGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLGNTID 961
LG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T+LGPKL +S + F G D
Sbjct: 58 LGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFD 117
Query: 962 SIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXXXXXSPDETSGNCQTEFEGVHS 1141
++FW+ DMQ++T++ELK +LY F + L+M S T+ C + E S
Sbjct: 118 TVFWKCDMQKLTVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVE-TCS 176
Query: 1142 QKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
+Q RQTCVRK LICAFA+AFI SVMLIAA Q+ RSGMK
Sbjct: 177 NQQIRQTCVRKSLICAFAIAFIISVMLIAANQVLRSGMK 215
>ref|NP_038905.1| calcium-binding protein 5 [Mus musculus].
Length = 173
Score = 85.1 bits (209), Expect = 1e-16
Identities = 47/118 (39%), Positives = 76/118 (64%), Gaps = 4/118 (3%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
+ELDE+REAF D+D +GFIS ++LG MR++GYMP+E+EL + Q++ M+ G+VDF+
Sbjct: 28 DELDELREAFLEFDKDQDGFISYKDLGNLMRTMGYMPTEMELTELGQQIRMNLGGRVDFE 87
Query: 887 EFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ---RITLEELKHILYHAFRDQLT 1048
+F+ ++ PKL++ G +G + F +FD ITL EL+ + ++LT
Sbjct: 88 DFVELMTPKLLAETA--GMIGVQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLT 143
Score = 52.0 bits (123), Expect = 1e-06
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +2
Query: 713 LDEIREAFRVLDRDGNGFISKQELGMAM-RSLGYMPSEVELAIIMQRLDMDGDGQVDFDE 889
+ E+R+AF+ D +G+G I+ EL AM R LG + E+A ++Q D++GDG VDF+E
Sbjct: 107 VQEMRDAFKEFDANGDGEITLAELQQAMQRLLGEKLTPREIAEVVQEADINGDGTVDFEE 166
Query: 890 FMTIL 904
F+ ++
Sbjct: 167 FVKMM 171
>ref|NP_038907.1| calcium-binding protein 1 [Mus musculus].
Length = 227
Score = 84.0 bits (206), Expect = 3e-16
Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAFR D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 82 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 141
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 142 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 188
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 163 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 222
Query: 896 TIL 904
++
Sbjct: 223 RMM 225
>ref|NP_081692.1| calmodulin-like protein 3 [Mus musculus].
Length = 149
Score = 79.0 bits (193), Expect = 8e-15
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ QELG MRSLG P+E EL ++ +D DG+G V
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGSITTQELGTVMRSLGQNPTEAELQGMVNEIDKDGNGTV 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD ++ EL+H++
Sbjct: 65 DFPEFLTMMSRKMKDTDSEE-----EIREAFRVFDKDGNGFVSAAELRHVM 110
Score = 68.6 bits (166), Expect = 1e-11
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNGF+S EL M LG S+ E+ ++Q D DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGFVSAAELRHVMTKLGEKLSDEEVDEMIQAADTDGDGQVNYEEFV 143
Query: 896 TILGPK 913
+L K
Sbjct: 144 HMLVSK 149
>ref|NP_031616.1| calmodulin [Mus musculus].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_031615.1| calmodulin [Mus musculus].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_033920.1| calmodulin [Mus musculus].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 4e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|NP_653115.1| calcium-binding protein 4 [Mus musculus].
Length = 271
Score = 75.9 bits (185), Expect = 7e-14
Identities = 52/128 (40%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Frame = +2
Query: 641 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 820
G LNR G D E + EEL+E++ AF D D +G+I +ELG MR+LGYMP+
Sbjct: 109 GPLLNRMF--GKDRE----LGPEELEELQAAFEEFDTDQDGYIGYRELGDCMRTLGYMPT 162
Query: 821 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 988
E+EL + Q + M G VDF+EF+ ++ PKL E LG + F +FD
Sbjct: 163 EMELLEVSQHVKMRMGGFVDFEEFVELISPKL--REETAHMLGVRELRIAFREFDKDRDG 220
Query: 989 RITLEELK 1012
RIT+ EL+
Sbjct: 221 RITVAELR 228
Score = 48.9 bits (115), Expect = 9e-06
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSE-VELAIIMQRLDMDGDGQVDFDEFM 895
E+R AFR D+D +G I+ EL A +L P E EL +++ +D++GDG +DFDEF+
Sbjct: 206 ELRIAFREFDKDRDGRITVAELRQAAPALLGEPLEGTELDEMLREMDLNGDGTIDFDEFV 265
Query: 896 TIL 904
+L
Sbjct: 266 MML 268
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,102,505
Number of extensions: 1318908
Number of successful extensions: 5121
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 5049
Number of HSP's successfully gapped: 37
Length of query: 452
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 347
Effective length of database: 12,463,779
Effective search space: 4324931313
Effective search space used: 4324931313
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007326
(1356 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124479.2| PREDICTED: calcium-binding protein 8-like [S... 314 8e-86
Alignment gi|XP_003133004.2| PREDICTED: hypothetical protein LOC100519801... 169 3e-42
Alignment gi|XP_003359172.1| PREDICTED: calcium-binding protein 1-like is... 83 4e-16
Alignment gi|XP_001928719.1| PREDICTED: calcium-binding protein 1-like is... 83 4e-16
Alignment gi|XP_003122513.1| PREDICTED: calcium-binding protein 4-like [S... 81 2e-15
Alignment gi|XP_001928222.1| PREDICTED: hypothetical protein LOC100154056... 77 2e-14
Alignment gi|XP_003356822.1| PREDICTED: hypothetical protein LOC100154056... 77 2e-14
Alignment gi|XP_003356001.1| PREDICTED: calmodulin [Sus scrofa]. 77 2e-14
Alignment gi|XP_003125211.1| PREDICTED: calmodulin-like [Sus scrofa]. 77 2e-14
Alignment gi|XP_003122500.1| PREDICTED: calcium-binding protein 2-like [S... 76 5e-14
>ref|XP_003124479.2| PREDICTED: calcium-binding protein 8-like [Sus scrofa].
Length = 195
Score = 314 bits (804), Expect = 8e-86
Identities = 161/182 (88%), Positives = 163/182 (89%)
Frame = +2
Query: 713 LDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEF 892
L EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEF
Sbjct: 14 LAEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEF 73
Query: 893 MTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXX 1072
MTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRD LTM
Sbjct: 74 MTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDHLTMKDIENII 133
Query: 1073 XXXXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSG 1252
S +ETSGNCQTEFEGVHSQKQNRQTCVRK LICAFAMAFI SVMLIAA QI RSG
Sbjct: 134 INEEESLNETSGNCQTEFEGVHSQKQNRQTCVRKSLICAFAMAFIISVMLIAANQILRSG 193
Query: 1253 MK 1258
M+
Sbjct: 194 ME 195
>ref|XP_003133004.2| PREDICTED: hypothetical protein LOC100519801 [Sus scrofa].
Length = 387
Score = 169 bits (428), Expect = 3e-42
Identities = 94/180 (52%), Positives = 117/180 (65%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFMT 898
EIREAF+V DRDGNGFISKQELG AMRSLGYMP+EVEL +I+QRLDMDGDGQVDF+EF+T
Sbjct: 235 EIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 294
Query: 899 ILGPKLVSSEGRDGFLGNTIDSIFWQFDMQRITLEELKHILYHAFRDQLTMXXXXXXXXX 1078
+LGPKL +S + F G D++FW+ DMQ++T++ELK +LY F + L+M
Sbjct: 295 LLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKLTVDELKRLLYDTFCEHLSM--------- 345
Query: 1079 XXXSPDETSGNCQTEFEGVHSQKQNRQTCVRKELICAFAMAFINSVMLIAAXQIXRSGMK 1258
+ E + AFA+AFI SVMLIAA Q+ RSGMK
Sbjct: 346 -------------KDIENI-----IMTXXXXXXXXXAFAIAFIISVMLIAANQVLRSGMK 387
>ref|XP_003359172.1| PREDICTED: calcium-binding protein 1-like isoform 2 [Sus scrofa].
Length = 167
Score = 82.8 bits (203), Expect = 4e-16
Identities = 42/108 (38%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAF+ D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 22 EEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 81
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 82 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 128
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 103 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 162
Query: 896 TIL 904
++
Sbjct: 163 RMM 165
>ref|XP_001928719.1| PREDICTED: calcium-binding protein 1-like isoform 1 [Sus scrofa].
Length = 226
Score = 82.8 bits (203), Expect = 4e-16
Identities = 42/108 (38%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E+REAF+ D+D +G+I+ ++LG MR++GYMP+E+EL + Q+++M+ G VDFD
Sbjct: 81 EEIEELREAFKEFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 140
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
+F+ ++GPKL+ +E D + F +FD I+ EL+ +
Sbjct: 141 DFVELMGPKLL-AETADMIGVKELRDAFREFDTNGDGEISTSELREAM 187
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/63 (42%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRS-LGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL AMR LG+ ++ I++ +D++GDG+VDF+EF+
Sbjct: 162 ELRDAFREFDTNGDGEISTSELREAMRKLLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFV 221
Query: 896 TIL 904
++
Sbjct: 222 RMM 224
>ref|XP_003122513.1| PREDICTED: calcium-binding protein 4-like [Sus scrofa].
Length = 273
Score = 80.9 bits (198), Expect = 2e-15
Identities = 55/128 (42%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Frame = +2
Query: 641 GNYLNRSLSAGSDSEQLANISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPS 820
G LNR G D E + EELDE+R AF D D +G I +ELG MR+LGYMP+
Sbjct: 111 GPLLNRIF--GKDRE----LGPEELDELRAAFEEFDTDHDGHIGYRELGECMRTLGYMPT 164
Query: 821 EVELAIIMQRLDMDGDGQVDFDEFMTILGPKLVSSEGRDGFLG-NTIDSIFWQFDMQ--- 988
E+EL + Q + M G+VDF+EF+ ++GPKL E LG + F +FD
Sbjct: 165 EMELIEVSQHVKMRMGGRVDFEEFVEMMGPKL--REETAHMLGVRELRIAFREFDRDRDG 222
Query: 989 RITLEELK 1012
RIT+ EL+
Sbjct: 223 RITVAELR 230
>ref|XP_001928222.1| PREDICTED: hypothetical protein LOC100154056 [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003356822.1| PREDICTED: hypothetical protein LOC100154056 [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003356001.1| PREDICTED: calmodulin [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003125211.1| PREDICTED: calmodulin-like [Sus scrofa].
Length = 149
Score = 77.4 bits (189), Expect = 2e-14
Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Frame = +2
Query: 698 ISVEELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQV 877
++ E++ E +EAF + D+DG+G I+ +ELG MRSLG P+E EL ++ +D DG+G +
Sbjct: 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 64
Query: 878 DFDEFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQ---RITLEELKHIL 1021
DF EF+T++ K+ ++ + I F FD I+ EL+H++
Sbjct: 65 DFPEFLTMMARKMKDTDSEE-----EIREAFRVFDKDGNGYISAAELRHVM 110
Score = 66.6 bits (161), Expect = 3e-11
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 716 DEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
+EIREAFRV D+DGNG+IS EL M +LG ++ E+ +++ D+DGDGQV+++EF+
Sbjct: 84 EEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFV 143
Query: 896 TILGPK 913
++ K
Sbjct: 144 QMMTAK 149
>ref|XP_003122500.1| PREDICTED: calcium-binding protein 2-like [Sus scrofa].
Length = 308
Score = 75.9 bits (185), Expect = 5e-14
Identities = 45/117 (38%), Positives = 73/117 (62%), Gaps = 3/117 (2%)
Frame = +2
Query: 707 EELDEIREAFRVLDRDGNGFISKQELGMAMRSLGYMPSEVELAIIMQRLDMDGDGQVDFD 886
EE++E++ AF+ DRD +G+I +ELG MR+LGYMP+E+EL I Q++ G+VDF+
Sbjct: 166 EEIEELQAAFQEFDRDRDGYIGYRELGACMRTLGYMPTEMELIEISQQI---SGGKVDFE 222
Query: 887 EFMTILGPKLVSSEGRDGFLGNTIDSIFWQFDMQR---ITLEELKHILYHAFRDQLT 1048
+F+ ++GPKL+ +E D + F +FD I+L EL+ L ++L+
Sbjct: 223 DFVELMGPKLL-AETADMIGVRELRDAFREFDSNGDGCISLGELRAALKALLGERLS 278
Score = 52.0 bits (123), Expect = 8e-07
Identities = 27/63 (42%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Frame = +2
Query: 719 EIREAFRVLDRDGNGFISKQELGMAMRSL-GYMPSEVELAIIMQRLDMDGDGQVDFDEFM 895
E+R+AFR D +G+G IS EL A+++L G S+ E+ I++ +D++GDG VDF+EF+
Sbjct: 244 ELRDAFREFDSNGDGCISLGELRAALKALLGERLSQREVDEILRDIDLNGDGLVDFEEFV 303
Query: 896 TIL 904
++
Sbjct: 304 RMM 306
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,262,987
Number of extensions: 1140443
Number of successful extensions: 4386
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4327
Number of HSP's successfully gapped: 37
Length of query: 452
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 350
Effective length of database: 8,804,438
Effective search space: 3081553300
Effective search space used: 3081553300
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007326
(1356 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 392 e-106
gb|GL896006.2| Sus scrofa unplaced genomic scaffold ChrUScaf3890 285 3e-74
gb|JH118887.1| Sus scrofa unplaced genomic scaffold ChrUScaf3150 100 4e-18
Sscrofa_Chr14 100 4e-18
>Sscrofa_Chr03
|| Length = 144787322
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Minus
Query: 204 ccctccaaattgggactctagccctttaaatctgctcagttaccaaaaaagaagaggcat 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190419 ccctccaaattgggactctagccctttaaatctgctcagttaccaaaaaagaagaggcat 16190360
Query: 264 cagaccctgttaattaaagctcgccctggtccatcattctgaggagctgcagtggctctg 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190359 cagaccctgttaattaaagctcgccctggtccatcattctgaggagctgcagtggctctg 16190300
Query: 324 ctccttcctgatggcttagagactctccttaactcccagccatggatcttggagaatttc 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190299 ctccttcctgatggcttagagactctccttaactcccagccatggatcttggagaatttc 16190240
Query: 384 ccctgagatcagcaggag 401
||||||||||||||||||
Sbjct: 16190239 ccctgagatcagcaggag 16190222
Score = 289 bits (146), Expect = 2e-75
Identities = 146/146 (100%)
Strand = Plus / Minus
Query: 719 gaaatccgagaggcctttcgggttctggaccgagacggcaatggcttcatctccaagcag 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15917395 gaaatccgagaggcctttcgggttctggaccgagacggcaatggcttcatctccaagcag 15917336
Query: 779 gagctgggaatggccatgcgatctttggggtacatgccgagtgaggtggagctggccatc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15917335 gagctgggaatggccatgcgatctttggggtacatgccgagtgaggtggagctggccatc 15917276
Query: 839 atcatgcagcgtctggacatggacgg 864
||||||||||||||||||||||||||
Sbjct: 15917275 atcatgcagcgtctggacatggacgg 15917250
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1 actcgtacgggtagcgcctggacccccggccccgcagctctgattcacaccatggagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190622 actcgtacgggtagcgcctggacccccggccccgcagctctgattcacaccatggagccc 16190563
Query: 61 aagacccccggggcgactggctgcccttttccaccttcaccgcgccacgtccttgctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16190562 aagacccccggggcgactggctgcccttttccaccttcaccgcgccacgtccttgctgaa 16190503
Query: 121 gagagacatctgcagaaagccttc 144
||||||||||||||||||||||||
Sbjct: 16190502 gagagacatctgcagaaagccttc 16190479
Score = 270 bits (136), Expect = 2e-69
Identities = 154/160 (96%)
Strand = Plus / Plus
Query: 974 cagtttgacatgcagaggataactctggaagagctgaagcacatcctctatcacgccttc 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15694499 cagtttgacatgcagaggataactctggaagagctgaagcacatcctctatcacgccttc 15694558
Query: 1034 cgggaccaattaaccatggaagacattgagaatatcattatccatgaggaggagagccct 1093
|||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 15694559 cgggaccacttaaccatgaaagacattgagaatatcattatcaatgaggaggagagcctg 15694618
Query: 1094 gacgagacctcggggaactgccagacagagttcgagggcg 1133
|||||||||||||||||||||||||||||||||||||||
Sbjct: 15694619 aacgagacctcggggaactgccagacagagttcgagggcg 15694658
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 594 gggagaagatgcctttccaccatgtgaccgctggcctgttgtacaaagggaattacctca 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16064038 gggagaagatgcctttccaccatgtgaccgctggcctgttgtacaaagggaattacctca 16063979
Query: 654 accgatctctctctgctggcagcgacagcgagcagctggccaacatctctgtggaggagc 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16063978 accgatctctctctgctggcagcgacagcgagcagctggccaacatctctgtggaggagc 16063919
Query: 714 ttgacg 719
||||||
Sbjct: 16063918 ttgacg 16063913
Score = 240 bits (121), Expect = 2e-60
Identities = 204/227 (89%), Gaps = 4/227 (1%)
Strand = Plus / Plus
Query: 1133 gtgcattcccagaagcagaaccggcagacctgcgtccggaaagagc-tcatctgcgcctt 1191
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 15708440 gtgcattcccagaagcagaaccggcagacctgcgtccggaa-gagcctcatctgcgcctt 15708498
Query: 1192 cgccatggccttcatcaatagcgtcatgctgatcgccgccaancagatccntcggagcgg 1251
||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||
Sbjct: 15708499 cgccatggccttcatcataagcgtcatgctgatcgcggccaaccagatcctccggagcgg 15708558
Query: 1252 catgaagtagcaacct-cccagcagctggcttcccggctcccgcatgtgcttggccttgc 1310
|||| ||||||| ||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct: 15708559 catggagtagcagcctccccagcagctgccttcccggctcccgcatgtgcttgccctgcg 15708618
Query: 1311 ggcagaaccctcctccccaaaa-caaaaacgggacggtgcaaatgcg 1356
|||||| ||||||||| ||||| || | ||||||| ||||| |||||
Sbjct: 15708619 ggcagacccctcctccgcaaaagcagagacgggaccgtgcagatgcg 15708665
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Minus
Query: 400 agagtctcagtgtctccgctgacgttcccttgatgggctcacaaatctttctgagaacat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155535 agagtctcagtgtctccgctgacgttcccttgatgggctcacaaatctttctgagaacat 16155476
Query: 460 cgccctggaccccccgatgcggctgcccgagcaacccggagcagggaagcctgagaat 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16155475 cgccctggaccccccgatgcggctgcccgagcaacccggagcagggaagcctgagaat 16155418
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 863 ggggatggccaggtggattttgatgaattcatgacaattcttggccccaaactggtgtct 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15866056 ggggatggccaggtggattttgatgaattcatgacaattcttggccccaaactggtgtct 15865997
Query: 923 tcagaaggtcgcgatggttttcttggaaacacaatagacagcatattctggcag 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15865996 tcagaaggtcgcgatggttttcttggaaacacaatagacagcatattctggcag 15865943
>gb|GL896006.2| Sus scrofa unplaced genomic scaffold ChrUScaf3890
Length = 34323
Score = 285 bits (144), Expect = 3e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 1 actcgtacgggtagcgcctggacccccggccccgcagctctgattcacaccatggagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4909 actcgtacgggtagcgcctggacccccggccccgcagctctgattcacaccatggagccc 4850
Query: 61 aagacccccggggcgactggctgcccttttccaccttcaccgcgccacgtccttgctgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4849 aagacccccggggcgactggctgcccttttccaccttcaccgcgccacgtccttgctgaa 4790
Query: 121 gagagacatctgcagaaagccttc 144
||||||||||||||||||||||||
Sbjct: 4789 gagagacatctgcagaaagccttc 4766
Score = 220 bits (111), Expect = 2e-54
Identities = 111/111 (100%)
Strand = Plus / Minus
Query: 267 accctgttaattaaagctcgccctggtccatcattctgaggagctgcagtggctctgctc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4624 accctgttaattaaagctcgccctggtccatcattctgaggagctgcagtggctctgctc 4565
Query: 327 cttcctgatggcttagagactctccttaactcccagccatggatcttggag 377
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4564 cttcctgatggcttagagactctccttaactcccagccatggatcttggag 4514
>gb|JH118887.1| Sus scrofa unplaced genomic scaffold ChrUScaf3150
Length = 151476
Score = 99.6 bits (50), Expect = 4e-18
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 755 ggcaatggcttcatctccaagcaggagctgggaatggccatgcgatctttggggtacatg 814
|||||||||||||||||||||||||||||||| | |||||||| || |||| ||||||
Sbjct: 58192 ggcaatggcttcatctccaagcaggagctgggcacagccatgcgctccctgggctacatg 58251
Query: 815 ccgagtgaggtggagctggccatcatcatgcagcgtctggacatggacgg 864
|| | |||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct: 58252 cccaatgaggtggagctggaggttatcatccagcggctggacatggacgg 58301
>Sscrofa_Chr14
|| Length = 153851969
Score = 99.6 bits (50), Expect = 4e-18
Identities = 95/110 (86%)
Strand = Plus / Plus
Query: 755 ggcaatggcttcatctccaagcaggagctgggaatggccatgcgatctttggggtacatg 814
|||||||||||||||||||||||||||||||| | |||||||| || |||| ||||||
Sbjct: 49789401 ggcaatggcttcatctccaagcaggagctgggcacagccatgcgctccctgggctacatg 49789460
Query: 815 ccgagtgaggtggagctggccatcatcatgcagcgtctggacatggacgg 864
|| | |||||||||||||| | ||||| ||||| ||||||||||||||
Sbjct: 49789461 cccaatgaggtggagctggaggttatcatccagcggctggacatggacgg 49789510
Score = 67.9 bits (34), Expect = 1e-08
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1181 atctgcgccttcgccatggccttcatcaatagcgtcatgctgatcgccgccaancag 1237
||||||||||||||||| |||||||||| ||||||||||| ||||| ||||| |||
Sbjct: 49791289 atctgcgccttcgccatcgccttcatcatcagcgtcatgctcatcgcggccaaccag 49791345
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,194,793
Number of extensions: 206
Number of successful extensions: 206
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 13
Length of query: 1356
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1335
Effective length of database: 2,808,413,156
Effective search space: 3749231563260
Effective search space used: 3749231563260
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)