Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007328
(981 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160089.1| pre-mRNA-splicing factor SLU7 [Bos taurus]. 458 e-129
>ref|NP_001160089.1| pre-mRNA-splicing factor SLU7 [Bos taurus].
Length = 586
Score = 458 bits (1179), Expect(3) = e-129
Identities = 220/252 (87%), Positives = 223/252 (88%)
Frame = +3
Query: 141 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 320
MSAAAVDA NA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDAANAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 321 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 500
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 501 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 680
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 681 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEKEPNFSTEKDHNSXXXXX 860
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGE+EPN TEKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE 240
Query: 861 XXXXXXXXMPGQ 896
MPGQ
Sbjct: 241 DKYADDIDMPGQ 252
Score = 23.5 bits (49), Expect(3) = e-129
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 940 RKDIAKYLRDLRSN 981
R+DIAKYLR+L N
Sbjct: 268 REDIAKYLRNLDPN 281
Score = 22.3 bits (46), Expect(3) = e-129
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 896 DFDP*RRNTVRNLKIEK 946
+FD RR TVRNL+I +
Sbjct: 253 NFDSKRRITVRNLRIRE 269
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,240,558
Number of extensions: 714568
Number of successful extensions: 1980
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1979
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,273,310
Effective search space: 3197221440
Effective search space used: 3197221440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007328
(981 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536446.2| PREDICTED: similar to step II splicing factor S... 462 e-131
>ref|XP_536446.2| PREDICTED: similar to step II splicing factor SLU7 [Canis
familiaris].
Length = 633
Score = 462 bits (1190), Expect(3) = e-131
Identities = 223/257 (86%), Positives = 227/257 (88%)
Frame = +3
Query: 126 GDRITMSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEE 305
G +ITMSAAAVDAVNA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEE
Sbjct: 43 GIQITMSAAAVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEE 102
Query: 306 GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY 485
GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY
Sbjct: 103 GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY 162
Query: 486 RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNP 665
RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNP
Sbjct: 163 RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNP 222
Query: 666 EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEKEPNFSTEKDHNS 845
EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGE+EPN EKDHNS
Sbjct: 223 EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNS 282
Query: 846 XXXXXXXXXXXXXMPGQ 896
MPGQ
Sbjct: 283 EDEDEDKYADDIDMPGQ 299
Score = 23.5 bits (49), Expect(3) = e-131
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 940 RKDIAKYLRDLRSN 981
R+DIAKYLR+L N
Sbjct: 315 REDIAKYLRNLDPN 328
Score = 22.3 bits (46), Expect(3) = e-131
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 896 DFDP*RRNTVRNLKIEK 946
+FD RR TVRNL+I +
Sbjct: 300 NFDSKRRITVRNLRIRE 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,725,922
Number of extensions: 740655
Number of successful extensions: 2083
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2081
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,440,896
Effective search space: 3458760704
Effective search space used: 3458760704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007328
(981 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006416.3| pre-mRNA-splicing factor SLU7 [Homo sapiens]. 451 e-127
>ref|NP_006416.3| pre-mRNA-splicing factor SLU7 [Homo sapiens].
Length = 586
Score = 451 bits (1159), Expect(3) = e-127
Identities = 216/252 (85%), Positives = 220/252 (87%)
Frame = +3
Query: 141 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 320
MSA VDAVNA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 321 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 500
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSI TKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC 120
Query: 501 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 680
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 681 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEKEPNFSTEKDHNSXXXXX 860
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGE+EPN EKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 240
Query: 861 XXXXXXXXMPGQ 896
MPGQ
Sbjct: 241 DKYADDIDMPGQ 252
Score = 23.5 bits (49), Expect(3) = e-127
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 940 RKDIAKYLRDLRSN 981
R+DIAKYLR+L N
Sbjct: 268 REDIAKYLRNLDPN 281
Score = 22.3 bits (46), Expect(3) = e-127
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 896 DFDP*RRNTVRNLKIEK 946
+FD RR TVRNL+I +
Sbjct: 253 NFDSKRRITVRNLRIRE 269
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,158,410
Number of extensions: 731851
Number of successful extensions: 2309
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2308
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,901,872
Effective search space: 3338019328
Effective search space used: 3338019328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007328
(981 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_945174.1| pre-mRNA-splicing factor SLU7 [Mus musculus]. 453 e-128
Alignment gi|NP_683514.2| pre-mRNA-splicing factor SLU7 [Mus musculus]. 453 e-128
>ref|NP_945174.1| pre-mRNA-splicing factor SLU7 [Mus musculus].
Length = 585
Score = 453 bits (1165), Expect(3) = e-128
Identities = 217/252 (86%), Positives = 223/252 (88%)
Frame = +3
Query: 141 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 320
MSAAAVD V+ATPM+GSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDPVSATPMTGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 321 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 500
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 501 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 680
ENCGAMTHK+KDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 681 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEKEPNFSTEKDHNSXXXXX 860
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGE+EPN EKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 240
Query: 861 XXXXXXXXMPGQ 896
MPGQ
Sbjct: 241 DKYADDIDMPGQ 252
Score = 23.5 bits (49), Expect(3) = e-128
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 940 RKDIAKYLRDLRSN 981
R+DIAKYLR+L N
Sbjct: 268 REDIAKYLRNLDPN 281
Score = 22.3 bits (46), Expect(3) = e-128
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 896 DFDP*RRNTVRNLKIEK 946
+FD RR TVRNL+I +
Sbjct: 253 NFDSKRRITVRNLRIRE 269
>ref|NP_683514.2| pre-mRNA-splicing factor SLU7 [Mus musculus].
Length = 585
Score = 453 bits (1165), Expect(3) = e-128
Identities = 217/252 (86%), Positives = 223/252 (88%)
Frame = +3
Query: 141 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 320
MSAAAVD V+ATPM+GSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDPVSATPMTGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 321 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 500
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 501 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 680
ENCGAMTHK+KDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 681 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEKEPNFSTEKDHNSXXXXX 860
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGE+EPN EKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 240
Query: 861 XXXXXXXXMPGQ 896
MPGQ
Sbjct: 241 DKYADDIDMPGQ 252
Score = 23.5 bits (49), Expect(3) = e-128
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 940 RKDIAKYLRDLRSN 981
R+DIAKYLR+L N
Sbjct: 268 REDIAKYLRNLDPN 281
Score = 22.3 bits (46), Expect(3) = e-128
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 896 DFDP*RRNTVRNLKIEK 946
+FD RR TVRNL+I +
Sbjct: 253 NFDSKRRITVRNLRIRE 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,566,511
Number of extensions: 632181
Number of successful extensions: 1855
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1855
Number of HSP's successfully gapped: 6
Length of query: 327
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,553,887
Effective search space: 2824624575
Effective search space used: 2824624575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007328
(981 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134141.1| PREDICTED: pre-mRNA-splicing factor SLU7-lik... 463 e-131
>ref|XP_003134141.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Sus scrofa].
Length = 586
Score = 463 bits (1192), Expect(3) = e-131
Identities = 224/252 (88%), Positives = 225/252 (89%)
Frame = +3
Query: 141 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 320
MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 321 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 500
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 501 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 680
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 681 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEKEPNFSTEKDHNSXXXXX 860
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGE+EPN TEKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE 240
Query: 861 XXXXXXXXMPGQ 896
MPGQ
Sbjct: 241 DKYADDIDMPGQ 252
Score = 23.5 bits (49), Expect(3) = e-131
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 940 RKDIAKYLRDLRSN 981
R+DIAKYLR+L N
Sbjct: 268 REDIAKYLRNLDPN 281
Score = 22.3 bits (46), Expect(3) = e-131
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 896 DFDP*RRNTVRNLKIEK 946
+FD RR TVRNL+I +
Sbjct: 253 NFDSKRRITVRNLRIRE 269
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,043,951
Number of extensions: 453447
Number of successful extensions: 1353
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1353
Number of HSP's successfully gapped: 3
Length of query: 327
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,879,129
Effective search space: 2024441412
Effective search space used: 2024441412
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007328
(981 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 373 e-100
>Sscrofa_Chr16
|| Length = 86898991
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 123 agaggagaccggataaccatgtcagctgcagctgtggatgcagttaatgctacccccatg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471428 agaggagaccggataaccatgtcagctgcagctgtggatgcagttaatgctacccccatg 68471487
Query: 183 tcggggtccaaagaaatgagtttggaggaaccaaagaagatgacccgagaggactggaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471488 tcggggtccaaagaaatgagtttggaggaaccaaagaagatgacccgagaggactggaga 68471547
Query: 243 aagaagaaggagctagaagaacagcgaaaattgggtaatgcccctgcagaagttgatgaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471548 aagaagaaggagctagaagaacagcgaaaattgggtaatgcccctgcagaagttgatgaa 68471607
Query: 303 gaaggaaa 310
||||||||
Sbjct: 68471608 gaaggaaa 68471615
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 544 agagacctagacgtgttggagcaaaatttacaggtactaatatagctccagacgaacata 603
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473824 agagacctaggcgtgttggagcaaaatttacaggtactaatatagctccagacgaacata 68473883
Query: 604 tccagcctcagctaatgtttgactacgatggaaagagggatcggtggaacggctacaatc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473884 tccagcctcagctaatgtttgactacgatggaaagagggatcggtggaacggctacaatc 68473943
Query: 664 cagaagaacacatgaaaattgtagaagaatatgccaaagttgatctgg 711
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473944 cagaagaacacatgaaaattgtagaagaatatgccaaagttgatctgg 68473991
Score = 305 bits (154), Expect = 2e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 311 agacatcaatcctcatatccctcagtatatttcttcagtgccatggtatattgatccatc 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68472703 agacatcaatcctcatatccctcagtatatttcttcagtgccatggtatattgatccatc 68472762
Query: 371 aaaaagacctaccttaaagcaccagagaccacagccagagaaacagaagcagtatagctc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68472763 aaaaagacctaccttaaagcaccagagaccacagccagagaaacagaagcagtatagctc 68472822
Query: 431 atctggagaatggtacaagaggggcgtgaaagag 464
||||||||||||||||||||||||||||||||||
Sbjct: 68472823 atctggagaatggtacaagaggggcgtgaaagag 68472856
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 gtcgtccggaaggcgccgcagtgggtgccgggagaggaaggaaagtcaggaagtaaacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68469358 gtcgtccggaaggcgccgcagtgggtgccgggagaggaaggaaagtcaggaagtaaacat 68469417
Query: 61 tgacgctccgcttccttcgtgtccggctgttttggggtcagcaactgcgcgacttcgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68469418 tgacgctccgcttccttcgtgtccggctgttttggggtcagcaactgcgcgacttcgtga 68469477
Query: 121 ccag 124
||||
Sbjct: 68469478 ccag 68469481
Score = 178 bits (90), Expect = 4e-42
Identities = 124/133 (93%), Gaps = 2/133 (1%)
Strand = Plus / Plus
Query: 827 ggaaaaagatcataatagtgaagatgaagatgaagataaatatgcngatgatattgacat 886
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 68498899 ggaaaaagatcataatagtgaagatgaagatgaagataaatatgcagatgatattgacat 68498958
Query: 887 gcctggacag-attttgacccctagagacgaaatactgtccggaatctca-aaatcgaaa 944
|||||||||| |||||||| | ||||||||| ||||||||||||||||| || |||| |
Sbjct: 68498959 gcctggacagaattttgactctaagagacgaattactgtccggaatctcagaattcgaga 68499018
Query: 945 agatatagcaaaa 957
|||||||||||||
Sbjct: 68499019 agatatagcaaaa 68499031
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 710 ggcaaaacgaacactgaaagcccaaaaactccaagaagaattagcctcaggaaagttagt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68475021 ggcaaaacgaacactgaaagcccaaaaactccaagaagaattagcctcaggaaagttagt 68475080
Query: 770 ggaacaggct 779
||||||||||
Sbjct: 68475081 ggaacaggct 68475090
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 463 agaattccataactactaagtaccgcaaaggagcatgtgaaaactgtggagccatgacac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473188 agaattccataactactaagtaccgcaaaggagcatgtgaaaactgtggagccatgacac 68473247
Query: 523 ac 524
||
Sbjct: 68473248 ac 68473249
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,315,824
Number of extensions: 281
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 7
Length of query: 981
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 960
Effective length of database: 2,808,413,156
Effective search space: 2696076629760
Effective search space used: 2696076629760
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)