Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007329
(976 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160089.1| pre-mRNA-splicing factor SLU7 [Bos taurus]. 444 e-133
>ref|NP_001160089.1| pre-mRNA-splicing factor SLU7 [Bos taurus].
Length = 586
Score = 444 bits (1142), Expect(3) = e-133
Identities = 212/230 (92%), Positives = 214/230 (93%)
Frame = +2
Query: 116 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 295
MSAAAVDA NA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDAANAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 296 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 475
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 476 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 655
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 656 IVEEYAKVDLAKRTLKAQKLQEELASGKLVGQANSPKHQWGEEEPNSPTE 805
IVEEYAKVDLAKRTLKAQKLQEELASGKLV QANSPKHQWGEEEPNS TE
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTE 230
Score = 46.6 bits (109), Expect(3) = e-133
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 859 MPGQNFDSKRRITVRNLRIREE 924
MPGQNFDSKRRITVRNLRIRE+
Sbjct: 249 MPGQNFDSKRRITVRNLRIRED 270
Score = 24.6 bits (52), Expect(3) = e-133
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 924 IAKYLRNLDXXSATMIP 974
IAKYLRNLD SA P
Sbjct: 271 IAKYLRNLDPNSAYYDP 287
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 30,669,745
Number of extensions: 696269
Number of successful extensions: 2087
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2086
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 223
Effective length of database: 14,306,398
Effective search space: 3190326754
Effective search space used: 3190326754
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007329
(976 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536446.2| PREDICTED: similar to step II splicing factor S... 447 e-136
>ref|XP_536446.2| PREDICTED: similar to step II splicing factor SLU7 [Canis
familiaris].
Length = 633
Score = 447 bits (1150), Expect(4) = e-136
Identities = 215/235 (91%), Positives = 217/235 (92%)
Frame = +2
Query: 101 GDWITMSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEE 280
G ITMSAAAVDAVNA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEE
Sbjct: 43 GIQITMSAAAVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEE 102
Query: 281 GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY 460
GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY
Sbjct: 103 GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY 162
Query: 461 RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNP 640
RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNP
Sbjct: 163 RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNP 222
Query: 641 EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVGQANSPKHQWGEEEPNSPTE 805
EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLV QANSPKHQWGEEEPNS E
Sbjct: 223 EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME 277
Score = 46.6 bits (109), Expect(4) = e-136
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 859 MPGQNFDSKRRITVRNLRIREE 924
MPGQNFDSKRRITVRNLRIRE+
Sbjct: 296 MPGQNFDSKRRITVRNLRIRED 317
Score = 28.5 bits (62), Expect(4) = e-136
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 1 CRERKESQEVNID 39
CRER ESQEVNID
Sbjct: 12 CRERAESQEVNID 24
Score = 24.6 bits (52), Expect(4) = e-136
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 924 IAKYLRNLDXXSATMIP 974
IAKYLRNLD SA P
Sbjct: 318 IAKYLRNLDPNSAYYDP 334
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,153,192
Number of extensions: 723744
Number of successful extensions: 2160
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2159
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 222
Effective length of database: 15,440,896
Effective search space: 3427878912
Effective search space used: 3427878912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007329
(976 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006416.3| pre-mRNA-splicing factor SLU7 [Homo sapiens]. 436 e-130
>ref|NP_006416.3| pre-mRNA-splicing factor SLU7 [Homo sapiens].
Length = 586
Score = 436 bits (1122), Expect(3) = e-130
Identities = 208/230 (90%), Positives = 211/230 (91%)
Frame = +2
Query: 116 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 295
MSA VDAVNA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 296 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 475
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSI TKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC 120
Query: 476 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 655
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 656 IVEEYAKVDLAKRTLKAQKLQEELASGKLVGQANSPKHQWGEEEPNSPTE 805
IVEEYAKVDLAKRTLKAQKLQEELASGKLV QANSPKHQWGEEEPNS E
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME 230
Score = 46.6 bits (109), Expect(3) = e-130
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 859 MPGQNFDSKRRITVRNLRIREE 924
MPGQNFDSKRRITVRNLRIRE+
Sbjct: 249 MPGQNFDSKRRITVRNLRIRED 270
Score = 24.6 bits (52), Expect(3) = e-130
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 924 IAKYLRNLDXXSATMIP 974
IAKYLRNLD SA P
Sbjct: 271 IAKYLRNLDPNSAYYDP 287
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 31,618,974
Number of extensions: 716549
Number of successful extensions: 2324
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2323
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 222
Effective length of database: 14,901,872
Effective search space: 3308215584
Effective search space used: 3308215584
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007329
(976 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_945174.1| pre-mRNA-splicing factor SLU7 [Mus musculus]. 439 e-131
Alignment gi|NP_683514.2| pre-mRNA-splicing factor SLU7 [Mus musculus]. 439 e-131
>ref|NP_945174.1| pre-mRNA-splicing factor SLU7 [Mus musculus].
Length = 585
Score = 439 bits (1128), Expect(3) = e-131
Identities = 209/230 (90%), Positives = 214/230 (93%)
Frame = +2
Query: 116 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 295
MSAAAVD V+ATPM+GSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDPVSATPMTGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 296 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 475
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 476 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 655
ENCGAMTHK+KDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 656 IVEEYAKVDLAKRTLKAQKLQEELASGKLVGQANSPKHQWGEEEPNSPTE 805
IVEEYAKVDLAKRTLKAQKLQEELASGKLV QANSPKHQWGEEEPNS E
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME 230
Score = 46.6 bits (109), Expect(3) = e-131
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 859 MPGQNFDSKRRITVRNLRIREE 924
MPGQNFDSKRRITVRNLRIRE+
Sbjct: 249 MPGQNFDSKRRITVRNLRIRED 270
Score = 24.6 bits (52), Expect(3) = e-131
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 924 IAKYLRNLDXXSATMIP 974
IAKYLRNLD SA P
Sbjct: 271 IAKYLRNLDPNSAYYDP 287
>ref|NP_683514.2| pre-mRNA-splicing factor SLU7 [Mus musculus].
Length = 585
Score = 439 bits (1128), Expect(3) = e-131
Identities = 209/230 (90%), Positives = 214/230 (93%)
Frame = +2
Query: 116 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 295
MSAAAVD V+ATPM+GSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDPVSATPMTGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 296 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 475
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 476 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 655
ENCGAMTHK+KDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 656 IVEEYAKVDLAKRTLKAQKLQEELASGKLVGQANSPKHQWGEEEPNSPTE 805
IVEEYAKVDLAKRTLKAQKLQEELASGKLV QANSPKHQWGEEEPNS E
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME 230
Score = 46.6 bits (109), Expect(3) = e-131
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 859 MPGQNFDSKRRITVRNLRIREE 924
MPGQNFDSKRRITVRNLRIRE+
Sbjct: 249 MPGQNFDSKRRITVRNLRIRED 270
Score = 24.6 bits (52), Expect(3) = e-131
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 924 IAKYLRNLDXXSATMIP 974
IAKYLRNLD SA P
Sbjct: 271 IAKYLRNLDPNSAYYDP 287
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,114,019
Number of extensions: 618075
Number of successful extensions: 1891
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1889
Number of HSP's successfully gapped: 6
Length of query: 325
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 223
Effective length of database: 12,553,887
Effective search space: 2799516801
Effective search space used: 2799516801
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007329
(976 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134141.1| PREDICTED: pre-mRNA-splicing factor SLU7-lik... 449 e-134
>ref|XP_003134141.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Sus scrofa].
Length = 586
Score = 449 bits (1155), Expect(3) = e-134
Identities = 216/230 (93%), Positives = 216/230 (93%)
Frame = +2
Query: 116 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 295
MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 296 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 475
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 476 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 655
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 656 IVEEYAKVDLAKRTLKAQKLQEELASGKLVGQANSPKHQWGEEEPNSPTE 805
IVEEYAKVDLAKRTLKAQKLQEELASGKLV QANSPKHQWGEEEPNS TE
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTE 230
Score = 46.6 bits (109), Expect(3) = e-134
Identities = 21/22 (95%), Positives = 22/22 (100%)
Frame = +1
Query: 859 MPGQNFDSKRRITVRNLRIREE 924
MPGQNFDSKRRITVRNLRIRE+
Sbjct: 249 MPGQNFDSKRRITVRNLRIRED 270
Score = 24.6 bits (52), Expect(3) = e-134
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +3
Query: 924 IAKYLRNLDXXSATMIP 974
IAKYLRNLD SA P
Sbjct: 271 IAKYLRNLDPNSAYYDP 287
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,686,768
Number of extensions: 442288
Number of successful extensions: 1380
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 3
Length of query: 325
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 226
Effective length of database: 8,879,129
Effective search space: 2006683154
Effective search space used: 2006683154
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007329
(976 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 357 7e-96
>Sscrofa_Chr16
|| Length = 86898991
Score = 357 bits (180), Expect = 7e-96
Identities = 186/188 (98%)
Strand = Plus / Plus
Query: 98 agaggagactggataaccatgtcagctgcagctgtggatgcagttaatgctacccccatg 157
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471428 agaggagaccggataaccatgtcagctgcagctgtggatgcagttaatgctacccccatg 68471487
Query: 158 tcagggtccaaagaaatgagtttggaggaaccaaagaagatgacccgagaggactggaga 217
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471488 tcggggtccaaagaaatgagtttggaggaaccaaagaagatgacccgagaggactggaga 68471547
Query: 218 aagaagaaggagctagaagaacagcgaaaattgggtaatgcccctgcagaagttgatgaa 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471548 aagaagaaggagctagaagaacagcgaaaattgggtaatgcccctgcagaagttgatgaa 68471607
Query: 278 gaaggaaa 285
||||||||
Sbjct: 68471608 gaaggaaa 68471615
Score = 325 bits (164), Expect = 3e-86
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 519 agagacctaggcgtgttggagcaaaatttacaggtactaatatagctccagacgaacata 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473824 agagacctaggcgtgttggagcaaaatttacaggtactaatatagctccagacgaacata 68473883
Query: 579 tccagcctcagctaatgtttgactacgatggaaagagggatcggtggaatggctacaatc 638
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 68473884 tccagcctcagctaatgtttgactacgatggaaagagggatcggtggaacggctacaatc 68473943
Query: 639 cagaagaacacatgaaaattgtagaagaatatgccaaagttgatctgg 686
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473944 cagaagaacacatgaaaattgtagaagaatatgccaaagttgatctgg 68473991
Score = 289 bits (146), Expect = 1e-75
Identities = 152/154 (98%)
Strand = Plus / Plus
Query: 286 agacatcaatcctcatatccctcagtatatttcttcagtgccatggtatattgatccatc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68472703 agacatcaatcctcatatccctcagtatatttcttcagtgccatggtatattgatccatc 68472762
Query: 346 aaaaagacctaccttaaagcaccagagaccacagccagaaaaacagaagcagtatagctc 405
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 68472763 aaaaagacctaccttaaagcaccagagaccacagccagagaaacagaagcagtatagctc 68472822
Query: 406 atctggagaatggtacaaaaggggcgtgaaagag 439
|||||||||||||||||| |||||||||||||||
Sbjct: 68472823 atctggagaatggtacaagaggggcgtgaaagag 68472856
Score = 206 bits (104), Expect = 2e-50
Identities = 116/119 (97%), Gaps = 1/119 (0%)
Strand = Plus / Plus
Query: 815 atagtgaagatgaagatgaagattaatatgcngatgatattgacatgcctggacagaatt 874
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 68498913 atagtgaagatgaagatgaagataaatatgcagatgatattgacatgcctggacagaatt 68498972
Query: 875 ttgactctaagagacgaattactgtccggaatctcagaattcgagaaga-atagcaaaa 932
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 68498973 ttgactctaagagacgaattactgtccggaatctcagaattcgagaagatatagcaaaa 68499031
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 1 tgccgggagaggaaggaaagtcaggaagtaaacattgacgatccgcttccttcgtgtccg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 68469383 tgccgggagaggaaggaaagtcaggaagtaaacattgacgctccgcttccttcgtgtccg 68469442
Query: 61 gctgttttggggtcagcaactgcgcgacttcgtgaccag 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 68469443 gctgttttggggtcagcaactgcgcgacttcgtgaccag 68469481
Score = 131 bits (66), Expect = 8e-28
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 685 ggcaaaacgaacactgaaagcccaaaaactccaagaagaattagcctcaggaaagttagt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68475021 ggcaaaacgaacactgaaagcccaaaaactccaagaagaattagcctcaggaaagttagt 68475080
Query: 745 gggacaggct 754
|| |||||||
Sbjct: 68475081 ggaacaggct 68475090
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 438 agaattccataactactaagtaccgcaaaggagcatgtgaaaactgtggagccatgacac 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473188 agaattccataactactaagtaccgcaaaggagcatgtgaaaactgtggagccatgacac 68473247
Query: 498 ac 499
||
Sbjct: 68473248 ac 68473249
Score = 89.7 bits (45), Expect = 3e-15
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 755 aattctccaaaacaccagtggggagaagaggaaccaaattctccaacgg 803
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 68498657 aattctccaaaacaccagtggggagaagaggaaccaaattctcaaacgg 68498705
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 31,472,417
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 8
Length of query: 976
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 955
Effective length of database: 2,808,413,156
Effective search space: 2682034563980
Effective search space used: 2682034563980
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)