Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007330
(1319 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001160089.1| pre-mRNA-splicing factor SLU7 [Bos taurus]. 746 0.0
>ref|NP_001160089.1| pre-mRNA-splicing factor SLU7 [Bos taurus].
Length = 586
Score = 746 bits (1927), Expect = 0.0
Identities = 365/399 (91%), Positives = 367/399 (91%)
Frame = +1
Query: 121 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 300
MSAAAVDA NA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDAANAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 301 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 480
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 481 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 660
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 661 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSXXXXX 840
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE 240
Query: 841 XXXXXXXXMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 1020
MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
Sbjct: 241 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 300
Query: 1021 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAREAYDKGSEVHLQADPTKLELLYKSFKVK 1200
GKNPDEVSYAGDNFVRYTGDTISMAQTQLFA EAYDKGSEVHLQADPTKLELLYKSFKVK
Sbjct: 301 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 360
Query: 1201 KEDFKEQQKESILEKYGGQXHFGCPPAELLLAQTEDYVE 1317
KEDFKEQQKESILEKYGGQ H PPAELLLAQTEDYVE
Sbjct: 361 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVE 399
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 42,195,024
Number of extensions: 968148
Number of successful extensions: 2586
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2585
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 334
Effective length of database: 14,207,134
Effective search space: 4745182756
Effective search space used: 4745182756
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007330
(1319 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536446.2| PREDICTED: similar to step II splicing factor S... 751 0.0
>ref|XP_536446.2| PREDICTED: similar to step II splicing factor SLU7 [Canis
familiaris].
Length = 633
Score = 751 bits (1938), Expect(2) = 0.0
Identities = 368/404 (91%), Positives = 371/404 (91%)
Frame = +1
Query: 106 GDRITMSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEE 285
G +ITMSAAAVDAVNA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEE
Sbjct: 43 GIQITMSAAAVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEE 102
Query: 286 GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY 465
GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY
Sbjct: 103 GKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKY 162
Query: 466 RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNP 645
RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNP
Sbjct: 163 RKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNP 222
Query: 646 EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNS 825
EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQ EKDHNS
Sbjct: 223 EEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNS 282
Query: 826 XXXXXXXXXXXXXMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMREN 1005
MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMREN
Sbjct: 283 EDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMREN 342
Query: 1006 PYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAREAYDKGSEVHLQADPTKLELLYK 1185
PYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFA EAYDKGSEVHLQADPTKLELLYK
Sbjct: 343 PYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYK 402
Query: 1186 SFKVKKEDFKEQQKESILEKYGGQXHFGCPPAELLLAQTEDYVE 1317
SFKVKKEDFKEQQKESILEKYGGQ H PPAELLLAQTEDYVE
Sbjct: 403 SFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVE 446
Score = 30.8 bits (68), Expect(2) = 0.0
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = +3
Query: 3 GCRERKESQEVNID 44
GCRER ESQEVNID
Sbjct: 11 GCRERAESQEVNID 24
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,189,977
Number of extensions: 1006483
Number of successful extensions: 2650
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2648
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 333
Effective length of database: 15,340,888
Effective search space: 5108515704
Effective search space used: 5108515704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007330
(1319 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006416.3| pre-mRNA-splicing factor SLU7 [Homo sapiens]. 739 0.0
>ref|NP_006416.3| pre-mRNA-splicing factor SLU7 [Homo sapiens].
Length = 586
Score = 739 bits (1907), Expect = 0.0
Identities = 361/399 (90%), Positives = 364/399 (91%)
Frame = +1
Query: 121 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 300
MSA VDAVNA P+SGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 301 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 480
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSI TKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC 120
Query: 481 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 660
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 661 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSXXXXX 840
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQ EKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 240
Query: 841 XXXXXXXXMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 1020
MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
Sbjct: 241 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 300
Query: 1021 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAREAYDKGSEVHLQADPTKLELLYKSFKVK 1200
GKNPDEVSYAGDNFVRYTGDTISMAQTQLFA EAYDKGSEVHLQADPTKLELLYKSFKVK
Sbjct: 301 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 360
Query: 1201 KEDFKEQQKESILEKYGGQXHFGCPPAELLLAQTEDYVE 1317
KEDFKEQQKESILEKYGGQ H PPAELLLAQTEDYVE
Sbjct: 361 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVE 399
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 43,465,772
Number of extensions: 995295
Number of successful extensions: 2842
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2841
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 333
Effective length of database: 14,802,980
Effective search space: 4929392340
Effective search space used: 4929392340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007330
(1319 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_945174.1| pre-mRNA-splicing factor SLU7 [Mus musculus]. 741 0.0
Alignment gi|NP_683514.2| pre-mRNA-splicing factor SLU7 [Mus musculus]. 741 0.0
>ref|NP_945174.1| pre-mRNA-splicing factor SLU7 [Mus musculus].
Length = 585
Score = 741 bits (1913), Expect = 0.0
Identities = 362/399 (90%), Positives = 367/399 (91%)
Frame = +1
Query: 121 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 300
MSAAAVD V+ATPM+GSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDPVSATPMTGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 301 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 480
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 481 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 660
ENCGAMTHK+KDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 661 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSXXXXX 840
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQ EKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 240
Query: 841 XXXXXXXXMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 1020
MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
Sbjct: 241 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 300
Query: 1021 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAREAYDKGSEVHLQADPTKLELLYKSFKVK 1200
GKNPDEVSYAGDNFVRYTGDTISMAQTQLFA EAYDKGSEVHLQADPTKLELLYKSFKVK
Sbjct: 301 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 360
Query: 1201 KEDFKEQQKESILEKYGGQXHFGCPPAELLLAQTEDYVE 1317
KEDFKEQQKESILEKYGGQ H PPAELLLAQTEDYVE
Sbjct: 361 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVE 399
>ref|NP_683514.2| pre-mRNA-splicing factor SLU7 [Mus musculus].
Length = 585
Score = 741 bits (1913), Expect = 0.0
Identities = 362/399 (90%), Positives = 367/399 (91%)
Frame = +1
Query: 121 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 300
MSAAAVD V+ATPM+GSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDPVSATPMTGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 301 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 480
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQ+SSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 481 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 660
ENCGAMTHK+KDCFERPRRVGAKFTGTNIAPDEH+QPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKRKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 661 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSXXXXX 840
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQ EKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 240
Query: 841 XXXXXXXXMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 1020
MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
Sbjct: 241 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 300
Query: 1021 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAREAYDKGSEVHLQADPTKLELLYKSFKVK 1200
GKNPDEVSYAGDNFVRYTGDTISMAQTQLFA EAYDKGSEVHLQADPTKLELLYKSFKVK
Sbjct: 301 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 360
Query: 1201 KEDFKEQQKESILEKYGGQXHFGCPPAELLLAQTEDYVE 1317
KEDFKEQQKESILEKYGGQ H PPAELLLAQTEDYVE
Sbjct: 361 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVE 399
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,239,579
Number of extensions: 858505
Number of successful extensions: 2345
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2344
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 335
Effective length of database: 12,493,815
Effective search space: 4185428025
Effective search space used: 4185428025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007330
(1319 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134141.1| PREDICTED: pre-mRNA-splicing factor SLU7-lik... 751 0.0
>ref|XP_003134141.1| PREDICTED: pre-mRNA-splicing factor SLU7-like [Sus scrofa].
Length = 586
Score = 751 bits (1940), Expect = 0.0
Identities = 369/399 (92%), Positives = 369/399 (92%)
Frame = +1
Query: 121 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWXXXXXXXXXXXXGNAPAEVDEEGKDIN 300
MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDW GNAPAEVDEEGKDIN
Sbjct: 1 MSAAAVDAVNATPMSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 60
Query: 301 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 480
PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC
Sbjct: 61 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQYSSSGEWYKRGVKENSITTKYRKGAC 120
Query: 481 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 660
ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK
Sbjct: 121 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHIQPQLMFDYDGKRDRWNGYNPEEHMK 180
Query: 661 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSXXXXX 840
IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNS
Sbjct: 181 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE 240
Query: 841 XXXXXXXXMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 1020
MPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
Sbjct: 241 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 300
Query: 1021 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAREAYDKGSEVHLQADPTKLELLYKSFKVK 1200
GKNPDEVSYAGDNFVRYTGDTISMAQTQLFA EAYDKGSEVHLQADPTKLELLYKSFKVK
Sbjct: 301 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 360
Query: 1201 KEDFKEQQKESILEKYGGQXHFGCPPAELLLAQTEDYVE 1317
KEDFKEQQKESILEKYGGQ H PPAELLLAQTEDYVE
Sbjct: 361 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVE 399
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.312 0.130 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,078,981
Number of extensions: 616104
Number of successful extensions: 1717
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1717
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 337
Effective length of database: 8,804,438
Effective search space: 2967095606
Effective search space used: 2967095606
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007330
(1319 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr16 373 e-100
>Sscrofa_Chr16
|| Length = 86898991
Score = 373 bits (188), Expect = e-100
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 103 agaggagaccggataaccatgtcagctgcagctgtggatgcagttaatgctacccccatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471428 agaggagaccggataaccatgtcagctgcagctgtggatgcagttaatgctacccccatg 68471487
Query: 163 tcggggtccaaagaaatgagtttggaggaaccaaagaagatgacccgagaggactggaga 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471488 tcggggtccaaagaaatgagtttggaggaaccaaagaagatgacccgagaggactggaga 68471547
Query: 223 aagaagaaggagctagaagaacagcgaaaattgggtaatgcccctgcagaagttgatgaa 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68471548 aagaagaaggagctagaagaacagcgaaaattgggtaatgcccctgcagaagttgatgaa 68471607
Query: 283 gaaggaaa 290
||||||||
Sbjct: 68471608 gaaggaaa 68471615
Score = 333 bits (168), Expect = 1e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 524 agagacctaggcgtgttggagcaaaatttacaggtactaatatagctccagacgaacata 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473824 agagacctaggcgtgttggagcaaaatttacaggtactaatatagctccagacgaacata 68473883
Query: 584 tccagcctcagctaatgtttgactacgatggaaagagggatcggtggaacggctacaatc 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473884 tccagcctcagctaatgtttgactacgatggaaagagggatcggtggaacggctacaatc 68473943
Query: 644 cagaagaacacatgaaaattgtagaagaatatgccaaagttgatctgg 691
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473944 cagaagaacacatgaaaattgtagaagaatatgccaaagttgatctgg 68473991
Score = 305 bits (154), Expect = 3e-80
Identities = 154/154 (100%)
Strand = Plus / Plus
Query: 291 agacatcaatcctcatatccctcagtatatttcttcagtgccatggtatattgatccatc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68472703 agacatcaatcctcatatccctcagtatatttcttcagtgccatggtatattgatccatc 68472762
Query: 351 aaaaagacctaccttaaagcaccagagaccacagccagagaaacagaagcagtatagctc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68472763 aaaaagacctaccttaaagcaccagagaccacagccagagaaacagaagcagtatagctc 68472822
Query: 411 atctggagaatggtacaagaggggcgtgaaagag 444
||||||||||||||||||||||||||||||||||
Sbjct: 68472823 atctggagaatggtacaagaggggcgtgaaagag 68472856
Score = 270 bits (136), Expect = 2e-69
Identities = 139/140 (99%)
Strand = Plus / Plus
Query: 1106 tgtttgctcgggaagcctatgacaaagggtctgaagtgcatttgcaagccgatcctacaa 1165
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68500448 tgtttgcttgggaagcctatgacaaagggtctgaagtgcatttgcaagccgatcctacaa 68500507
Query: 1166 aactagagctgttgtataagtccttcaaagtcaagaaagaagacttcaaagaacagcaga 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68500508 aactagagctgttgtataagtccttcaaagtcaagaaagaagacttcaaagaacagcaga 68500567
Query: 1226 aagaaagcatcctggaaaag 1245
||||||||||||||||||||
Sbjct: 68500568 aagaaagcatcctggaaaag 68500587
Score = 264 bits (133), Expect = 1e-67
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 807 ggaaaaagatcataatagtgaagatgaagatgaagataaatatgcagatgatattgacat 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68498899 ggaaaaagatcataatagtgaagatgaagatgaagataaatatgcagatgatattgacat 68498958
Query: 867 gcctggacagaattttgactctaagagacgaattactgtccggaatctcagaattcgaga 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68498959 gcctggacagaattttgactctaagagacgaattactgtccggaatctcagaattcgaga 68499018
Query: 927 agatatagcaaaa 939
|||||||||||||
Sbjct: 68499019 agatatagcaaaa 68499031
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 gtgggtgccgggagaggaaggaaagtcaggaagtaaacattgacgctccgcttccttcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68469378 gtgggtgccgggagaggaaggaaagtcaggaagtaaacattgacgctccgcttccttcgt 68469437
Query: 61 gtccggctgttttggggtcagcaactgcgcgacttcgtgaccag 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68469438 gtccggctgttttggggtcagcaactgcgcgacttcgtgaccag 68469481
Score = 194 bits (98), Expect = 9e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 940 tatttgcggaatttagatccaaattctgcttactatgatcccaaaactagagcaatgaga 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68499432 tatttgcggaatttagatccaaattctgcttactatgatcccaaaactagagcaatgaga 68499491
Query: 1000 gagaatccctatgccaatgcaggaaagaatccagatga 1037
||||||||||||||||||||||||||||||||||||||
Sbjct: 68499492 gagaatccctatgccaatgcaggaaagaatccagatga 68499529
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 690 ggcaaaacgaacactgaaagcccaaaaactccaagaagaattagcctcaggaaagttagt 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68475021 ggcaaaacgaacactgaaagcccaaaaactccaagaagaattagcctcaggaaagttagt 68475080
Query: 750 ggaacaggct 759
||||||||||
Sbjct: 68475081 ggaacaggct 68475090
Score = 135 bits (68), Expect = 7e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1038 agtgagctatgcaggggataactttgttagatacacaggcgataccatatcaatggctca 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68500246 agtgagctatgcaggggataactttgttagatacacaggcgataccatatcaatggctca 68500305
Query: 1098 gacacaat 1105
||||||||
Sbjct: 68500306 gacacaat 68500313
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 443 agaattccataactactaagtaccgcaaaggagcatgtgaaaactgtggagccatgacac 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68473188 agaattccataactactaagtaccgcaaaggagcatgtgaaaactgtggagccatgacac 68473247
Query: 503 ac 504
||
Sbjct: 68473248 ac 68473249
Score = 109 bits (55), Expect = 4e-21
Identities = 73/77 (94%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 1244 agtatggtggncagnaacactttggatgccc-tccagccgaactgcttttagctcagact 1302
|||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 68501728 agtatggtggccaggaacactt-ggatgcccctccagccgaactgcttttagctcagact 68501786
Query: 1303 gaagactatgtggagta 1319
|||||||||||||||||
Sbjct: 68501787 gaagactatgtggagta 68501803
Score = 97.6 bits (49), Expect = 1e-17
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 760 aattctccaaaacaccagtggggagaagaggaaccaaattctcaaacgg 808
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68498657 aattctccaaaacaccagtggggagaagaggaaccaaattctcaaacgg 68498705
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 42,749,601
Number of extensions: 332
Number of successful extensions: 332
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 332
Number of HSP's successfully gapped: 12
Length of query: 1319
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1298
Effective length of database: 2,808,413,156
Effective search space: 3645320276488
Effective search space used: 3645320276488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)