Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007362
(1036 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068942.1| 28S ribosomal protein S16, mitochondrial pre... 265 6e-71
>ref|NP_001068942.1| 28S ribosomal protein S16, mitochondrial precursor [Bos taurus].
Length = 135
Score = 265 bits (676), Expect = 6e-71
Identities = 125/133 (93%), Positives = 132/133 (99%)
Frame = +1
Query: 166 MVQLTTVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNS 345
MVQLTTVLC+AYRGGHLTIRLALGGCTNRPFYRIVAAH+KCPRDGRFVEQLGSYDP+PNS
Sbjct: 1 MVQLTTVLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPMPNS 60
Query: 346 HGEKLVALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLL 525
HGEKLVALN DRIRHWIGCGAHLSKPVEKLLGLSGF+PLHPM+ITNAERLRRKRA+EVLL
Sbjct: 61 HGEKLVALNLDRIRHWIGCGAHLSKPVEKLLGLSGFFPLHPMVITNAERLRRKRAQEVLL 120
Query: 526 ASQKTDTEATETK 564
A+QKTDTEATETK
Sbjct: 121 AAQKTDTEATETK 133
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,089,361
Number of extensions: 1172333
Number of successful extensions: 4793
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4764
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007362
(1036 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852347.1| PREDICTED: similar to mitochondrial ribosomal p... 280 1e-75
>ref|XP_852347.1| PREDICTED: similar to mitochondrial ribosomal protein S16 [Canis
familiaris].
Length = 326
Score = 280 bits (717), Expect = 1e-75
Identities = 141/190 (74%), Positives = 151/190 (79%)
Frame = +1
Query: 1 WAIRFRHRGARLGSLRGEVGASGALTFPVXXXXXXXXXXRSAGTGAQAPAPSGCAMVQLT 180
W +RF RG+RLG V G L A GA+ AP+GC MVQLT
Sbjct: 142 WVLRFPLRGSRLG-----VSRCGRLRVGPPPRPTGGSALGGAARGARESAPAGCTMVQLT 196
Query: 181 TVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNSHGEKL 360
VL +AY GGHLTIRLAL GCTNRPFYRIVAAH+KCPRDGRFVEQLGSYDPLPNSHGEK+
Sbjct: 197 PVLRKAYHGGHLTIRLALSGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKI 256
Query: 361 VALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLLASQKT 540
VALN +RIRHWIGCGAHLSKPVE+LLGLSGF+PLHPMMITNAERLRRKRAREVLLASQKT
Sbjct: 257 VALNLERIRHWIGCGAHLSKPVERLLGLSGFFPLHPMMITNAERLRRKRAREVLLASQKT 316
Query: 541 DTEATETKAS 570
DTEATETK S
Sbjct: 317 DTEATETKTS 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,817,064
Number of extensions: 1208093
Number of successful extensions: 4760
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4734
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007362
(1036 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057149.1| 28S ribosomal protein S16, mitochondrial precur... 261 6e-70
>ref|NP_057149.1| 28S ribosomal protein S16, mitochondrial precursor [Homo sapiens].
Length = 137
Score = 261 bits (668), Expect = 6e-70
Identities = 123/135 (91%), Positives = 132/135 (97%)
Frame = +1
Query: 166 MVQLTTVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNS 345
MV LTT+LC+AYRGGHLTIRLALGGCTNRPFYRIVAAH+KCPRDGRFVEQLGSYDPLPNS
Sbjct: 1 MVHLTTLLCKAYRGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS 60
Query: 346 HGEKLVALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLL 525
HGEKLVALN DRIRHWIGCGAHLSKP+EKLLGL+GF+PLHPMMITNAERLRRKRAREVLL
Sbjct: 61 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLAGFFPLHPMMITNAERLRRKRAREVLL 120
Query: 526 ASQKTDTEATETKAS 570
ASQKTD EAT+T+A+
Sbjct: 121 ASQKTDAEATDTEAT 135
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,033,859
Number of extensions: 1185380
Number of successful extensions: 4646
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4610
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007362
(1036 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079716.1| 28S ribosomal protein S16, mitochondrial precur... 258 7e-69
>ref|NP_079716.1| 28S ribosomal protein S16, mitochondrial precursor [Mus musculus].
Length = 135
Score = 258 bits (658), Expect = 7e-69
Identities = 121/135 (89%), Positives = 130/135 (96%)
Frame = +1
Query: 166 MVQLTTVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNS 345
MVQLTT+ C+AY GGHLTIRLALGGCTNRPFYRIVAAH+KCPRDGRFVEQLGSYDPLPNS
Sbjct: 1 MVQLTTIFCKAYHGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNS 60
Query: 346 HGEKLVALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLL 525
HGEKLVALN DRIRHWIGCGAHLSKP+EKLLGLSGF+PLHPMMITNAERLRR+RAREVLL
Sbjct: 61 HGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLSGFFPLHPMMITNAERLRRRRAREVLL 120
Query: 526 ASQKTDTEATETKAS 570
ASQK ++EA ET+AS
Sbjct: 121 ASQKAESEAKETEAS 135
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,559,347
Number of extensions: 985753
Number of successful extensions: 3785
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3760
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007362
(1036 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133122.1| PREDICTED: 28S ribosomal protein S16, mitoch... 279 2e-75
>ref|XP_003133122.1| PREDICTED: 28S ribosomal protein S16, mitochondrial-like [Sus
scrofa].
Length = 135
Score = 279 bits (713), Expect = 2e-75
Identities = 135/135 (100%), Positives = 135/135 (100%)
Frame = +1
Query: 166 MVQLTTVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNS 345
MVQLTTVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNS
Sbjct: 1 MVQLTTVLCRAYRGGHLTIRLALGGCTNRPFYRIVAAHSKCPRDGRFVEQLGSYDPLPNS 60
Query: 346 HGEKLVALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLL 525
HGEKLVALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLL
Sbjct: 61 HGEKLVALNFDRIRHWIGCGAHLSKPVEKLLGLSGFYPLHPMMITNAERLRRKRAREVLL 120
Query: 526 ASQKTDTEATETKAS 570
ASQKTDTEATETKAS
Sbjct: 121 ASQKTDTEATETKAS 135
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,515,258
Number of extensions: 758850
Number of successful extensions: 3167
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3136
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007362
(1036 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1154 0.0
Sscrofa_Chr01 254 8e-65
>Sscrofa_Chr14
|| Length = 153851969
Score = 1154 bits (582), Expect = 0.0
Identities = 594/598 (99%)
Strand = Plus / Minus
Query: 439 ggtctttctggcttttaccctctgcatcccatgatgatcacaaatgctgagagactgcga 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136793 ggtctttctggcttttaccctctgcatcccatgatgatcacaaatgctgagagactgcga 82136734
Query: 499 cggaaacgggcacgagaagtcctcttagcgtctcagaaaacagatacagaggctacagaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136733 cggaaacgggcacgagaagtcctcttagcgtctcagaaaacagatacagaggctacagaa 82136674
Query: 559 acaaaagcgagctgacttaaatgagtgtagcagtggaaataagtttaagtccaattaaaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136673 acaaaagcgagctgacttaaatgagtgtagcagtggaaataagtttaagtccaattaaaa 82136614
Query: 619 catttgtgcagaactcttagttttattagacttagaggttaataaatgtagtttttaaag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136613 catttgtgcagaactcttagttttattagacttagaggttaataaatgtagtttttaaag 82136554
Query: 679 tcacccatgcttttctggcctgaacagggctcagggaaggtttgttcttgattgacgtaa 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136553 tcacccatgcttttctggcctgaacagggctcagggaaggtttgttcttgattgacgtaa 82136494
Query: 739 agctggtataggtactaattagctttttcagccttcatctggggaaaacagtggttgtgg 798
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 82136493 agctggtataggtactaattagctttttcagccttcatctggggaaaatagtggttgtgg 82136434
Query: 799 ggtgggttggattctgcctctattggacaactttttagcctgctgccttccaagacttcc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136433 ggtgggttggattctgcctctattggacaactttttagcctgctgccttccaagacttcc 82136374
Query: 859 ctgtttcaaagctgccaaccagaatgttcatggcctatccaagtaattcttcctgtaatc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82136373 ctgtttcaaagctgccaaccagaatgttcatggcctatccaagtaattcttcctgtaatc 82136314
Query: 919 atttgcgatcatcccaccaactcaagaacacagttacctcccaggtaggtttgttatgag 978
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 82136313 atttgcgatcatcccaccaactcaagaacacagttacttccaaggtaggtttgttatgag 82136254
Query: 979 cttttaggctactttttaaaaatgaatagctgaaagaaagataatgttgtaaagtacc 1036
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 82136253 cttttaggctactttttaagaatgaatagctgaaagaaagataatgttgtaaagtacc 82136196
Score = 1154 bits (582), Expect = 0.0
Identities = 594/598 (99%)
Strand = Plus / Minus
Query: 439 ggtctttctggcttttaccctctgcatcccatgatgatcacaaatgctgagagactgcga 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197832 ggtctttctggcttttaccctctgcatcccatgatgatcacaaatgctgagagactgcga 82197773
Query: 499 cggaaacgggcacgagaagtcctcttagcgtctcagaaaacagatacagaggctacagaa 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197772 cggaaacgggcacgagaagtcctcttagcgtctcagaaaacagatacagaggctacagaa 82197713
Query: 559 acaaaagcgagctgacttaaatgagtgtagcagtggaaataagtttaagtccaattaaaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197712 acaaaagcgagctgacttaaatgagtgtagcagtggaaataagtttaagtccaattaaaa 82197653
Query: 619 catttgtgcagaactcttagttttattagacttagaggttaataaatgtagtttttaaag 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197652 catttgtgcagaactcttagttttattagacttagaggttaataaatgtagtttttaaag 82197593
Query: 679 tcacccatgcttttctggcctgaacagggctcagggaaggtttgttcttgattgacgtaa 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197592 tcacccatgcttttctggcctgaacagggctcagggaaggtttgttcttgattgacgtaa 82197533
Query: 739 agctggtataggtactaattagctttttcagccttcatctggggaaaacagtggttgtgg 798
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 82197532 agctggtataggtactaattagctttttcagccttcatctggggaaaatagtggttgtgg 82197473
Query: 799 ggtgggttggattctgcctctattggacaactttttagcctgctgccttccaagacttcc 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197472 ggtgggttggattctgcctctattggacaactttttagcctgctgccttccaagacttcc 82197413
Query: 859 ctgtttcaaagctgccaaccagaatgttcatggcctatccaagtaattcttcctgtaatc 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82197412 ctgtttcaaagctgccaaccagaatgttcatggcctatccaagtaattcttcctgtaatc 82197353
Query: 919 atttgcgatcatcccaccaactcaagaacacagttacctcccaggtaggtttgttatgag 978
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 82197352 atttgcgatcatcccaccaactcaagaacacagttacttccaaggtaggtttgttatgag 82197293
Query: 979 cttttaggctactttttaaaaatgaatagctgaaagaaagataatgttgtaaagtacc 1036
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 82197292 cttttaggctactttttaagaatgaatagctgaaagaaagataatgttgtaaagtacc 82197235
Score = 521 bits (263), Expect = e-145
Identities = 263/263 (100%)
Strand = Plus / Minus
Query: 179 ctactgttctgtgcagggcctaccgtggaggccatttaaccatccgccttgccctgggtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82137821 ctactgttctgtgcagggcctaccgtggaggccatttaaccatccgccttgccctgggtg 82137762
Query: 239 gctgtaccaaccggcctttctaccgcatcgtggctgctcacagcaagtgtcccagggatg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82137761 gctgtaccaaccggcctttctaccgcatcgtggctgctcacagcaagtgtcccagggatg 82137702
Query: 299 gccgttttgtagagcagctgggctcctatgatccgctgcccaacagtcatggagagaaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82137701 gccgttttgtagagcagctgggctcctatgatccgctgcccaacagtcatggagagaaac 82137642
Query: 359 tcgtagctctcaacttcgaccggatcagacattggattggctgtggggcccacctctcta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82137641 tcgtagctctcaacttcgaccggatcagacattggattggctgtggggcccacctctcta 82137582
Query: 419 agcctgtggaaaagctcctgggt 441
|||||||||||||||||||||||
Sbjct: 82137581 agcctgtggaaaagctcctgggt 82137559
Score = 521 bits (263), Expect = e-145
Identities = 263/263 (100%)
Strand = Plus / Minus
Query: 179 ctactgttctgtgcagggcctaccgtggaggccatttaaccatccgccttgccctgggtg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82198860 ctactgttctgtgcagggcctaccgtggaggccatttaaccatccgccttgccctgggtg 82198801
Query: 239 gctgtaccaaccggcctttctaccgcatcgtggctgctcacagcaagtgtcccagggatg 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82198800 gctgtaccaaccggcctttctaccgcatcgtggctgctcacagcaagtgtcccagggatg 82198741
Query: 299 gccgttttgtagagcagctgggctcctatgatccgctgcccaacagtcatggagagaaac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82198740 gccgttttgtagagcagctgggctcctatgatccgctgcccaacagtcatggagagaaac 82198681
Query: 359 tcgtagctctcaacttcgaccggatcagacattggattggctgtggggcccacctctcta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82198680 tcgtagctctcaacttcgaccggatcagacattggattggctgtggggcccacctctcta 82198621
Query: 419 agcctgtggaaaagctcctgggt 441
|||||||||||||||||||||||
Sbjct: 82198620 agcctgtggaaaagctcctgggt 82198598
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 1 tgggccattcgcttccggcaccggggagccaggctggggtcgctgaggggtgaggtcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82138484 tgggccattcgcttccggcaccggggagccaggctggggtcgctgaggggtgaggtcggg 82138425
Query: 61 gcttcgggggcattgacctttcctgtctgtccgccgtgcagtccttgaccgtagagccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82138424 gcttcgggggcattgacctttcctgtctgtccgccgtgcagtccttgaccgtagagccga 82138365
Query: 121 tcggccggaactggcgcacaggccccggcgccctctggctgcgccatggtccagctca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82138364 tcggccggaactggcgcacaggccccggcgccctctggctgcgccatggtccagctca 82138307
Score = 353 bits (178), Expect = 1e-94
Identities = 178/178 (100%)
Strand = Plus / Minus
Query: 1 tgggccattcgcttccggcaccggggagccaggctggggtcgctgaggggtgaggtcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82199523 tgggccattcgcttccggcaccggggagccaggctggggtcgctgaggggtgaggtcggg 82199464
Query: 61 gcttcgggggcattgacctttcctgtctgtccgccgtgcagtccttgaccgtagagccga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82199463 gcttcgggggcattgacctttcctgtctgtccgccgtgcagtccttgaccgtagagccga 82199404
Query: 121 tcggccggaactggcgcacaggccccggcgccctctggctgcgccatggtccagctca 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82199403 tcggccggaactggcgcacaggccccggcgccctctggctgcgccatggtccagctca 82199346
>Sscrofa_Chr01
|| Length = 315321322
Score = 254 bits (128), Expect = 8e-65
Identities = 167/180 (92%)
Strand = Plus / Plus
Query: 500 ggaaacgggcacgagaagtcctcttagcgtctcagaaaacagatacagaggctacagaaa 559
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 233328721 ggaaaccggcacgagaagtcctcttagcatctcagaaaacagatacagaggctacagaaa 233328780
Query: 560 caaaagcgagctgacttaaatgagtgtagcagtggaaataagtttaagtccaattaaaac 619
||||||||||||||| | || ||| |||||||||||||||||| |||||||||||||||
Sbjct: 233328781 caaaagcgagctgacctcaaagagcatagcagtggaaataagttgaagtccaattaaaac 233328840
Query: 620 atttgtgcagaactcttagttttattagacttagaggttaataaatgtagtttttaaagt 679
||||||||||||| || ||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 233328841 atttgtgcagaaccctcagttttattaggtttagaggtcaataaatgtagtttttaaagt 233328900
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,386,264
Number of extensions: 224
Number of successful extensions: 224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 7
Length of query: 1036
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1015
Effective length of database: 2,808,413,156
Effective search space: 2850539353340
Effective search space used: 2850539353340
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)