Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007364
(1017 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851336.1| 2',3'-cyclic-nucleotide 3'-phosphodiesterase [B... 523 e-148
Alignment gi|XP_002691802.1| PREDICTED: NEDD4 binding protein 2-like 2 [B... 60 2e-09
Alignment gi|XP_615015.3| PREDICTED: phosphonoformate immuno-associated p... 60 2e-09
Alignment gi|XP_002688251.1| PREDICTED: phosphonoformate immuno-associate... 50 3e-06
Alignment gi|XP_587938.4| PREDICTED: phosphonoformate immuno-associated p... 50 3e-06
>ref|NP_851336.1| 2',3'-cyclic-nucleotide 3'-phosphodiesterase [Bos taurus].
Length = 400
Score = 523 bits (1347), Expect = e-148
Identities = 254/279 (91%), Positives = 268/279 (96%)
Frame = +3
Query: 180 MSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKV 359
MSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGSGKSTLA+ I+D+YRDGTK+
Sbjct: 1 MSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGSGKSTLARFIVDKYRDGTKM 60
Query: 360 VSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQY 539
VSAD+YKITPGARG+F+EEYK+LDEDLAACCRRD RVLVLDDTNHERERLEQLFE+ADQY
Sbjct: 61 VSADSYKITPGARGSFSEEYKQLDEDLAACCRRDFRVLVLDDTNHERERLEQLFELADQY 120
Query: 540 QYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGLEKDFLPLYFGWFLSRKSSES 719
QYQVVLVEPKTAWRLDCAQLKEKN WQLSADDLKKLKPGLEKDFLPLYFGWFL++KSS +
Sbjct: 121 QYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPGLEKDFLPLYFGWFLTKKSSAA 180
Query: 720 LRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAYFGKRPPGVLHCTTKFCDYGK 899
L K GQTFLEELGNHKAFKKELRHF SGDEPREK+ELV YFGKRPPGVLHCTTKFCDYGK
Sbjct: 181 LWKTGQTFLEELGNHKAFKKELRHFVSGDEPREKIELVTYFGKRPPGVLHCTTKFCDYGK 240
Query: 900 AAGAEEYAQQEVVKKSYSKAFVLTISALFVTPXTTGARV 1016
AAGAEEYAQQ+VVKKSY KAF LTISALFVTP TTGARV
Sbjct: 241 AAGAEEYAQQDVVKKSYCKAFTLTISALFVTPKTTGARV 279
>ref|XP_002691802.1| PREDICTED: NEDD4 binding protein 2-like 2 [Bos taurus].
Length = 1290
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +3
Query: 234 DEETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGAR---GA 404
+EE + LQ K L +LRGLPGSGK+TL+++++ + RDG + D + G R
Sbjct: 473 EEEKLHKLQ--KLLILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDYFHHQDGYRYNVNQ 530
Query: 405 FTEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRL 584
+ + + +++D+TN + ++ EMA Y+V EP+T W+
Sbjct: 531 LGDAHDWNQNRAKQAINQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRVEFHEPETWWKF 590
Query: 585 DCAQLKEKNHWQLSADDLKKL 647
D +L+++N +S + ++
Sbjct: 591 DPEELEKRNKHGVSRKKIAQM 611
>ref|XP_615015.3| PREDICTED: phosphonoformate immuno-associated protein 5 [Bos taurus].
Length = 1615
Score = 60.5 bits (145), Expect = 2e-09
Identities = 39/141 (27%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +3
Query: 234 DEETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGAR---GA 404
+EE + LQ K L +LRGLPGSGK+TL+++++ + RDG + D + G R
Sbjct: 798 EEEKLHKLQ--KLLILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDYFHHQDGYRYNVNQ 855
Query: 405 FTEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRL 584
+ + + +++D+TN + ++ EMA Y+V EP+T W+
Sbjct: 856 LGDAHDWNQNRAKQAINQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRVEFHEPETWWKF 915
Query: 585 DCAQLKEKNHWQLSADDLKKL 647
D +L+++N +S + ++
Sbjct: 916 DPEELEKRNKHGVSRKKIAQM 936
>ref|XP_002688251.1| PREDICTED: phosphonoformate immuno-associated protein 5-like [Bos
taurus].
Length = 1767
Score = 50.1 bits (118), Expect = 3e-06
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +3
Query: 273 LFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDED----- 437
L +LRGLPGSGKS LA+ + + G + + D + I G + + + L E
Sbjct: 440 LVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYIN----GQYQFDVRYLGEAHEWNQ 495
Query: 438 --LAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN 611
+ + +++D+TN + ++ ++ +++Y+V+ EP T W+ +L +N
Sbjct: 496 NRAKEAFEKKVSPVIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRN 555
Query: 612 HWQLSADDLKKL 647
+S + + ++
Sbjct: 556 IHGISKEKITRM 567
>ref|XP_587938.4| PREDICTED: phosphonoformate immuno-associated protein 5-like [Bos
taurus].
Length = 1767
Score = 50.1 bits (118), Expect = 3e-06
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +3
Query: 273 LFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDED----- 437
L +LRGLPGSGKS LA+ + + G + + D + I G + + + L E
Sbjct: 440 LVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYIN----GQYQFDVRYLGEAHEWNQ 495
Query: 438 --LAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN 611
+ + +++D+TN + ++ ++ +++Y+V+ EP T W+ +L +N
Sbjct: 496 NRAKEAFEKKVSPVIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRN 555
Query: 612 HWQLSADDLKKL 647
+S + + ++
Sbjct: 556 IHGISKEKITRM 567
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,741,422
Number of extensions: 867013
Number of successful extensions: 4787
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4776
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,273,310
Effective search space: 3368501160
Effective search space used: 3368501160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007364
(1017 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849560.1| PREDICTED: similar to 2,3-cyclic-nucleotide 3-p... 557 e-159
Alignment gi|XP_534508.2| PREDICTED: similar to CG7139-PA, isoform A [Can... 60 4e-09
Alignment gi|XP_536248.2| PREDICTED: similar to Nedd4 binding protein 2 [... 51 2e-06
>ref|XP_849560.1| PREDICTED: similar to 2,3-cyclic-nucleotide 3-phosphodiesterase (CNP)
(CNPase) [Canis familiaris].
Length = 538
Score = 557 bits (1435), Expect = e-159
Identities = 272/298 (91%), Positives = 285/298 (95%)
Frame = +3
Query: 123 NRGFSRKSQTFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGS 302
NR FSRKS FLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGS
Sbjct: 120 NRSFSRKSHAFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGS 179
Query: 303 GKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVLD 482
GKSTLA+VI+DRYRDGTK+VSADAYKITPGARG F+EEYKRLDEDLAA CRRD+RVLVLD
Sbjct: 180 GKSTLARVIVDRYRDGTKMVSADAYKITPGARGDFSEEYKRLDEDLAAYCRRDVRVLVLD 239
Query: 483 DTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGLE 662
DTNHERERLEQLFE+ADQYQYQVVLVEPKTAWRLDCAQLKEKN WQLSAD+LKKLKPGLE
Sbjct: 240 DTNHERERLEQLFELADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADELKKLKPGLE 299
Query: 663 KDFLPLYFGWFLSRKSSESLRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAYF 842
KDFLPLYFGWFL++KSSESLRKAGQ FLEELGNHKAFKKELRHF SGDEPREK+ELV YF
Sbjct: 300 KDFLPLYFGWFLTKKSSESLRKAGQAFLEELGNHKAFKKELRHFVSGDEPREKIELVTYF 359
Query: 843 GKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKKSYSKAFVLTISALFVTPXTTGARV 1016
GKRPPGVLHCTTKFCDYGKAAGA+EYAQQ+VVKKSY KAF LTI+ALFVTP T GARV
Sbjct: 360 GKRPPGVLHCTTKFCDYGKAAGADEYAQQDVVKKSYCKAFTLTITALFVTPKTAGARV 417
>ref|XP_534508.2| PREDICTED: similar to CG7139-PA, isoform A [Canis familiaris].
Length = 1204
Score = 59.7 bits (143), Expect = 4e-09
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 237 EETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGAR---GAF 407
EE + LQ K L +LRGLPGSGK+TL+++++ + RDG + D + G R
Sbjct: 388 EEKLNKLQ--KLLILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDYFHHQDGYRYNVNQL 445
Query: 408 TEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLD 587
+ + + +++D+TN + ++ EMA Y+V EP+T W+ D
Sbjct: 446 GDAHDWNQNRAKQAINQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRVEFHEPETWWKFD 505
Query: 588 CAQLKEKNHWQLSADDLKKL 647
+L+++N +S + ++
Sbjct: 506 PEELEKRNKHGVSRKKIAQM 525
>ref|XP_536248.2| PREDICTED: similar to Nedd4 binding protein 2 [Canis familiaris].
Length = 1772
Score = 51.2 bits (121), Expect = 2e-06
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +3
Query: 273 LFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDED----- 437
L +LRGLPGSGKS LA+ + + G + + D + I G + + K L E
Sbjct: 442 LVLLRGLPGSGKSFLARTLQEDNPSGIILSTDDYFYIN----GQYQFDVKYLGEAHDWNQ 497
Query: 438 --LAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN 611
+ + +++D+TN + ++ ++ +++Y+V+ EP T W+ +L +N
Sbjct: 498 NRAKEAFEKKVSPIIIDNTNLQAWEMKPYVSLSQKHKYKVLFREPDTWWKFKPKELARRN 557
Query: 612 HWQLSADDLKKL 647
+S + + ++
Sbjct: 558 IHGVSKEKITRM 569
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,280,189
Number of extensions: 886873
Number of successful extensions: 4753
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4702
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 236
Effective length of database: 15,440,896
Effective search space: 3644051456
Effective search space used: 3644051456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007364
(1017 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_149124.3| 2',3'-cyclic-nucleotide 3'-phosphodiesterase [H... 556 e-158
Alignment gi|NP_438169.2| NEDD4-binding protein 2-like 1 isoform 1 [Homo ... 60 2e-09
Alignment gi|NP_055702.1| NEDD4-binding protein 2-like 2 isoform 2 [Homo ... 57 3e-08
Alignment gi|NP_060647.2| NEDD4-binding protein 2 [Homo sapiens]. 52 1e-06
>ref|NP_149124.3| 2',3'-cyclic-nucleotide 3'-phosphodiesterase [Homo sapiens].
Length = 421
Score = 556 bits (1432), Expect = e-158
Identities = 274/300 (91%), Positives = 287/300 (95%), Gaps = 1/300 (0%)
Frame = +3
Query: 120 MNRGFSRKSQTFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPG 299
MNRGFSRKS TFLPKIFFRKMSSSGAKDKPELQFPFLQDE+TVATL ECKTLFILRGLPG
Sbjct: 1 MNRGFSRKSHTFLPKIFFRKMSSSGAKDKPELQFPFLQDEDTVATLLECKTLFILRGLPG 60
Query: 300 SGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDEDLAACCRR-DIRVLV 476
SGKSTLA+VI+D+YRDGTK+VSADAYKITPGARGAF+EEYKRLDEDLAA CRR DIR+LV
Sbjct: 61 SGKSTLARVIVDKYRDGTKMVSADAYKITPGARGAFSEEYKRLDEDLAAYCRRRDIRILV 120
Query: 477 LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPG 656
LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN WQLSADDLKKLKPG
Sbjct: 121 LDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPG 180
Query: 657 LEKDFLPLYFGWFLSRKSSESLRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVA 836
LEKDFLPLYFGWFL++KSSE+LRKAGQ FLEELGNHKAFKKELR F GDEPREKM+LV
Sbjct: 181 LEKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRQFVPGDEPREKMDLVT 240
Query: 837 YFGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKKSYSKAFVLTISALFVTPXTTGARV 1016
YFGKRPPGVLHCTTKFCDYGKA GAEEYAQQ+V+KKSYSKAF LTISALFVTP TTGARV
Sbjct: 241 YFGKRPPGVLHCTTKFCDYGKAPGAEEYAQQDVLKKSYSKAFTLTISALFVTPKTTGARV 300
>ref|NP_438169.2| NEDD4-binding protein 2-like 1 isoform 1 [Homo sapiens].
Length = 243
Score = 60.5 bits (145), Expect = 2e-09
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)
Frame = +3
Query: 267 KTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGA---RGAFTEEYKRLDED 437
K L++LRGLPGSGK+TLA+ + + + D + GA F EE ++
Sbjct: 42 KHLYLLRGLPGSGKTTLARQLQHDFPRALIFSTDDFFFREDGAYEFNPDFLEEAHEWNQK 101
Query: 438 LAA-CCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNH 614
A R I +++D+TN ++ MA + Y+V+ EP T W+ + +L +N
Sbjct: 102 RARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELARRNI 161
Query: 615 WQLSADDLKKLKPGLEKD 668
+S + + ++K E D
Sbjct: 162 HGVSREKIHRMKERYEHD 179
>ref|NP_055702.1| NEDD4-binding protein 2-like 2 isoform 2 [Homo sapiens].
Length = 583
Score = 57.0 bits (136), Expect = 3e-08
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 237 EETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGAR---GAF 407
EE + LQ K L +LRGLPGSGK+TL+++++ + RDG + D + G R
Sbjct: 394 EEKLNKLQ--KLLILLRGLPGSGKTTLSRILLGQNRDGIVFSTDDYFHHQDGYRYNVNQL 451
Query: 408 TEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLD 587
+ + + +++D+TN + ++ E+A Y+V EP+T W+ D
Sbjct: 452 GDAHDWNQNRAKQAIDQGRSPVIIDNTNIQAWEMKPYVEVAIGKGYRVEFHEPETWWKFD 511
Query: 588 CAQLKEKNHWQLSADDLKKL 647
+L+++N +S + ++
Sbjct: 512 PEELEKRNKHGVSRKKIAQM 531
>ref|NP_060647.2| NEDD4-binding protein 2 [Homo sapiens].
Length = 1770
Score = 51.6 bits (122), Expect = 1e-06
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +3
Query: 273 LFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDED----- 437
L +LRGLPGSGKS LA+ + + G + + D + I G + + K L E
Sbjct: 442 LVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYIN----GQYQFDVKYLGEAHEWNQ 497
Query: 438 --LAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN 611
+ I +++D+TN + ++ ++ +++Y+V+ EP T W+ +L +N
Sbjct: 498 NRAKEAFEKKISPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRN 557
Query: 612 HWQLSADDLKKL 647
+S + + ++
Sbjct: 558 IHGVSKEKITRM 569
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,428,383
Number of extensions: 859823
Number of successful extensions: 4439
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4418
Number of HSP's successfully gapped: 4
Length of query: 339
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 236
Effective length of database: 14,901,872
Effective search space: 3516841792
Effective search space used: 3516841792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007364
(1017 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034053.2| 2',3'-cyclic-nucleotide 3'-phosphodiesterase is... 536 e-152
Alignment gi|NP_001139790.1| 2',3'-cyclic-nucleotide 3'-phosphodiesterase... 504 e-143
Alignment gi|NP_958757.2| NEDD4-binding protein 2-like 2 [Mus musculus]. 59 6e-09
Alignment gi|NP_598659.3| NEDD4-binding protein 2-like 1 [Mus musculus]. 55 7e-08
Alignment gi|NP_001020088.1| Nedd4 binding protein 2 [Mus musculus]. 51 2e-06
>ref|NP_034053.2| 2',3'-cyclic-nucleotide 3'-phosphodiesterase isoform 2 [Mus
musculus].
Length = 420
Score = 536 bits (1380), Expect = e-152
Identities = 259/299 (86%), Positives = 281/299 (93%)
Frame = +3
Query: 120 MNRGFSRKSQTFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPG 299
MN F+RKS TFLPK+FFRKMSSSGAK+KPELQFPFLQDE+TVATL ECKTLFILRGLPG
Sbjct: 1 MNTSFTRKSHTFLPKLFFRKMSSSGAKEKPELQFPFLQDEDTVATLHECKTLFILRGLPG 60
Query: 300 SGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVL 479
SGKSTLA++I+++Y DGTK+VSADAYKI PG+R F+E YKRLDEDLA CRRDIRVLVL
Sbjct: 61 SGKSTLARLILEKYHDGTKMVSADAYKIIPGSRADFSEAYKRLDEDLAGYCRRDIRVLVL 120
Query: 480 DDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGL 659
DDTNHERERL+QLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN WQLSADDLKKLKPGL
Sbjct: 121 DDTNHERERLDQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPGL 180
Query: 660 EKDFLPLYFGWFLSRKSSESLRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAY 839
EKDFLPLYFGWFL++KSSE+LRKAGQ FLEELGNHKAFKKELRHF SGDEP+EK+ELV+Y
Sbjct: 181 EKDFLPLYFGWFLTKKSSETLRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSY 240
Query: 840 FGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKKSYSKAFVLTISALFVTPXTTGARV 1016
FGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVK+SY KAF L+ISALFVTP T GA+V
Sbjct: 241 FGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQV 299
>ref|NP_001139790.1| 2',3'-cyclic-nucleotide 3'-phosphodiesterase isoform 1 [Mus
musculus].
Length = 400
Score = 504 bits (1298), Expect = e-143
Identities = 244/279 (87%), Positives = 264/279 (94%)
Frame = +3
Query: 180 MSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKV 359
MSSSGAK+KPELQFPFLQDE+TVATL ECKTLFILRGLPGSGKSTLA++I+++Y DGTK+
Sbjct: 1 MSSSGAKEKPELQFPFLQDEDTVATLHECKTLFILRGLPGSGKSTLARLILEKYHDGTKM 60
Query: 360 VSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQY 539
VSADAYKI PG+R F+E YKRLDEDLA CRRDIRVLVLDDTNHERERL+QLFEMADQY
Sbjct: 61 VSADAYKIIPGSRADFSEAYKRLDEDLAGYCRRDIRVLVLDDTNHERERLDQLFEMADQY 120
Query: 540 QYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGLEKDFLPLYFGWFLSRKSSES 719
QYQVVLVEPKTAWRLDCAQLKEKN WQLSADDLKKLKPGLEKDFLPLYFGWFL++KSSE+
Sbjct: 121 QYQVVLVEPKTAWRLDCAQLKEKNQWQLSADDLKKLKPGLEKDFLPLYFGWFLTKKSSET 180
Query: 720 LRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAYFGKRPPGVLHCTTKFCDYGK 899
LRKAGQ FLEELGNHKAFKKELRHF SGDEP+EK+ELV+YFGKRPPGVLHCTTKFCDYGK
Sbjct: 181 LRKAGQVFLEELGNHKAFKKELRHFISGDEPKEKLELVSYFGKRPPGVLHCTTKFCDYGK 240
Query: 900 AAGAEEYAQQEVVKKSYSKAFVLTISALFVTPXTTGARV 1016
AAGAEEYAQQEVVK+SY KAF L+ISALFVTP T GA+V
Sbjct: 241 AAGAEEYAQQEVVKRSYGKAFKLSISALFVTPKTAGAQV 279
>ref|NP_958757.2| NEDD4-binding protein 2-like 2 [Mus musculus].
Length = 575
Score = 58.9 bits (141), Expect = 6e-09
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 237 EETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGAR---GAF 407
EE + LQ K L +LRGLPGSGK+TL+++++ + RDG + D + G R
Sbjct: 386 EEKLNKLQ--KLLILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDYFHHQDGYRYNVNQL 443
Query: 408 TEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLD 587
+ + + +++D+TN + ++ EMA Y+V EP+T W+ D
Sbjct: 444 GDAHDWNQNRAKQAIDQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRVEFHEPETWWKFD 503
Query: 588 CAQLKEKNHWQLSADDLKKL 647
+L+++N +S + ++
Sbjct: 504 PEELEKRNKHGVSRKKIAQM 523
>ref|NP_598659.3| NEDD4-binding protein 2-like 1 [Mus musculus].
Length = 238
Score = 55.5 bits (132), Expect = 7e-08
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 7/139 (5%)
Frame = +3
Query: 267 KTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSAD-------AYKITPGARGAFTEEYKR 425
K L++LRGLPGSGK+TLA+ + Y + D Y+ P E ++
Sbjct: 40 KHLYLLRGLPGSGKTTLARQLQHDYPRALIFSTDDFFFKEDGTYEFNPNL---LEEAHEW 96
Query: 426 LDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKE 605
R I +++D+TN ++ MA + Y+V+ EP T W+ + +L
Sbjct: 97 NQRRARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEVIFREPDTRWKFNVQELAR 156
Query: 606 KNHWQLSADDLKKLKPGLE 662
+N + + ++++K E
Sbjct: 157 RNIHGVPKEKIQRMKERYE 175
>ref|NP_001020088.1| Nedd4 binding protein 2 [Mus musculus].
Length = 1678
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +3
Query: 273 LFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDED----- 437
L +LRGLPGSGKS LA+ + + G + + D + I G + + K L E
Sbjct: 365 LVLLRGLPGSGKSFLARTLQEDNPGGVILSTDDYFYIN----GQYQFDVKYLGEAHEWNQ 420
Query: 438 --LAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN 611
+ + +++D+TN + ++ ++ +++Y+V+ EP T W+ +L +N
Sbjct: 421 NRAKEAFEKKVSPVIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRN 480
Query: 612 HWQLSADDLKKL 647
+S + + ++
Sbjct: 481 IHGVSKEKISRM 492
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,945,928
Number of extensions: 711736
Number of successful extensions: 3451
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3440
Number of HSP's successfully gapped: 5
Length of query: 339
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 237
Effective length of database: 12,553,887
Effective search space: 2975271219
Effective search space used: 2975271219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007364
(1017 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003131468.2| PREDICTED: 2',3'-cyclic-nucleotide 3'-phosph... 603 e-173
Alignment gi|XP_001924666.1| PREDICTED: NEDD4-binding protein 2-like 2-li... 60 3e-09
Alignment gi|XP_003128979.1| PREDICTED: NEDD4-binding protein 2 [Sus scro... 51 9e-07
>ref|XP_003131468.2| PREDICTED: 2',3'-cyclic-nucleotide 3'-phosphodiesterase [Sus scrofa].
Length = 420
Score = 603 bits (1555), Expect = e-173
Identities = 298/299 (99%), Positives = 298/299 (99%)
Frame = +3
Query: 120 MNRGFSRKSQTFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPG 299
MNRGFSRKSQTFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPG
Sbjct: 1 MNRGFSRKSQTFLPKIFFRKMSSSGAKDKPELQFPFLQDEETVATLQECKTLFILRGLPG 60
Query: 300 SGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVL 479
SGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVL
Sbjct: 61 SGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDEDLAACCRRDIRVLVL 120
Query: 480 DDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGL 659
DDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGL
Sbjct: 121 DDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKNHWQLSADDLKKLKPGL 180
Query: 660 EKDFLPLYFGWFLSRKSSESLRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAY 839
EKDFLPLYFGWFLSRKSSESLRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAY
Sbjct: 181 EKDFLPLYFGWFLSRKSSESLRKAGQTFLEELGNHKAFKKELRHFGSGDEPREKMELVAY 240
Query: 840 FGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKKSYSKAFVLTISALFVTPXTTGARV 1016
FGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKKSYSKAFVLTISALFVTP TTGARV
Sbjct: 241 FGKRPPGVLHCTTKFCDYGKAAGAEEYAQQEVVKKSYSKAFVLTISALFVTPKTTGARV 299
>ref|XP_001924666.1| PREDICTED: NEDD4-binding protein 2-like 2-like [Sus scrofa].
Length = 581
Score = 59.7 bits (143), Expect = 3e-09
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +3
Query: 237 EETVATLQECKTLFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGAR---GAF 407
EE + LQ K L +LRGLPGSGK+TL+++++ + RDG + D + G R
Sbjct: 392 EEKLNKLQ--KLLILLRGLPGSGKTTLSRILLGQSRDGIVFSTDDYFHHQDGYRYNVNQL 449
Query: 408 TEEYKRLDEDLAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLD 587
+ + + +++D+TN + ++ EMA Y+V EP+T W+ D
Sbjct: 450 GDAHDWNQNRAKQAINQGRSPVIIDNTNTQAWEMKPYVEMAIGKGYRVEFHEPETWWKFD 509
Query: 588 CAQLKEKNHWQLSADDLKKL 647
+L+++N +S + ++
Sbjct: 510 PEELEKRNKHGVSRKKIAQM 529
>ref|XP_003128979.1| PREDICTED: NEDD4-binding protein 2 [Sus scrofa].
Length = 1760
Score = 51.2 bits (121), Expect = 9e-07
Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Frame = +3
Query: 273 LFILRGLPGSGKSTLAQVIMDRYRDGTKVVSADAYKITPGARGAFTEEYKRLDED----- 437
L +LRGLPGSGKS LA+ + + G + + D + I G + + K L E
Sbjct: 434 LVLLRGLPGSGKSFLARTLQEDNPSGVILSTDDYFYIN----GQYQFDVKYLGEAHEWNQ 489
Query: 438 --LAACCRRDIRVLVLDDTNHERERLEQLFEMADQYQYQVVLVEPKTAWRLDCAQLKEKN 611
+ + +++D+TN + ++ ++ +++Y+V+ EP T W+ +L +N
Sbjct: 490 NRAKEAFEKKVSPIIIDNTNLQAWEMKPYVALSQKHKYKVLFREPDTWWKFKPKELARRN 549
Query: 612 HWQLSADDLKKL 647
+S + + ++
Sbjct: 550 IHGVSKEKITRM 561
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,988,907
Number of extensions: 583041
Number of successful extensions: 3179
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3172
Number of HSP's successfully gapped: 3
Length of query: 339
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 239
Effective length of database: 8,854,232
Effective search space: 2116161448
Effective search space used: 2116161448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007364
(1017 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1330 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1330 bits (671), Expect = 0.0
Identities = 671/671 (100%)
Strand = Plus / Minus
Query: 122 gaatagaggcttctcccgaaagagccaaacgttcctgcccaagatcttcttccgcaaaat 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054483 gaatagaggcttctcccgaaagagccaaacgttcctgcccaagatcttcttccgcaaaat 21054424
Query: 182 gtcatcctcaggggccaaggacaagccggagctgcagtttcccttcctgcaggatgagga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054423 gtcatcctcaggggccaaggacaagccggagctgcagtttcccttcctgcaggatgagga 21054364
Query: 242 gacggtggccacgctgcaggagtgcaagacgctcttcatcctgcgcggcctgcccgggag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054363 gacggtggccacgctgcaggagtgcaagacgctcttcatcctgcgcggcctgcccgggag 21054304
Query: 302 cggcaagtccacgctggcccaggtcatcatggacaggtaccgggatggcaccaaggtggt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054303 cggcaagtccacgctggcccaggtcatcatggacaggtaccgggatggcaccaaggtggt 21054244
Query: 362 gtccgccgatgcctacaagatcacccccggcgccagaggagccttcaccgaggagtacaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054243 gtccgccgatgcctacaagatcacccccggcgccagaggagccttcaccgaggagtacaa 21054184
Query: 422 gcggctggacgaggacctggccgcctgctgccgccgggacatccgtgtcctcgtgctgga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054183 gcggctggacgaggacctggccgcctgctgccgccgggacatccgtgtcctcgtgctgga 21054124
Query: 482 cgacaccaaccacgagcgggagcggctggagcagctctttgagatggccgaccagtacca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054123 cgacaccaaccacgagcgggagcggctggagcagctctttgagatggccgaccagtacca 21054064
Query: 542 gtaccaggtggtgctggtggagcccaagacggcgtggcggctggactgtgcccagctcaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054063 gtaccaggtggtgctggtggagcccaagacggcgtggcggctggactgtgcccagctcaa 21054004
Query: 602 ggagaagaaccactggcagctgtcggccgacgatctgaagaagctgaagcctgggctgga 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21054003 ggagaagaaccactggcagctgtcggccgacgatctgaagaagctgaagcctgggctgga 21053944
Query: 662 gaaggacttcctgccgctctactttggctggttcctgtccaggaagagttccgagagcct 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21053943 gaaggacttcctgccgctctactttggctggttcctgtccaggaagagttccgagagcct 21053884
Query: 722 ccgcaaagccggccagaccttcctggaggagctgggcaaccacaaggccttcaagaaaga 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21053883 ccgcaaagccggccagaccttcctggaggagctgggcaaccacaaggccttcaagaaaga 21053824
Query: 782 gctgcgacact 792
|||||||||||
Sbjct: 21053823 gctgcgacact 21053813
Score = 283 bits (143), Expect = 9e-74
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 793 ttggctctggggacgagcccagggagaagatggagctggtggcctactttgggaagagac 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21051040 ttggctctggggacgagcccagggagaagatggagctggtggcctactttgggaagagac 21050981
Query: 853 ccccgggtgtgctgcactgcacaaccaagttctgtgactacgggaaggcggccggggcag 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21050980 ccccgggtgtgctgcactgcacaaccaagttctgtgactacgggaaggcggccggggcag 21050921
Query: 913 aggagtacgcccagcaggaagtg 935
|||||||||||||||||||||||
Sbjct: 21050920 aggagtacgcccagcaggaagtg 21050898
Score = 163 bits (82), Expect = 2e-37
Identities = 84/85 (98%)
Strand = Plus / Minus
Query: 933 gtggtgaagaaatcctacagcaaggccttcgtgctgaccatctccgcgctctttgtgacg 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21049786 gtggtgaagaaatcctacagcaaggccttcgtgctgaccatctccgcgctctttgtgacg 21049727
Query: 993 cccnagacgacgggagcccgggtgg 1017
||| |||||||||||||||||||||
Sbjct: 21049726 cccaagacgacgggagcccgggtgg 21049702
Score = 101 bits (51), Expect = 7e-19
Identities = 98/121 (80%)
Strand = Plus / Minus
Query: 2 tgtaaggcggccgagcgtggccacgcgcgaccgctagactccgtgtccctnnnnnnnnnn 61
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 21055818 tgtaaggcggccgagcgtggccacgcgccaccgctagactccgtgtccctccgcgcgggc 21055759
Query: 62 nnnnnnnnnnnnagagccagtgctgcgaaggcggcgaccgcggcgcctcctcctcatcat 121
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21055758 gggcggccccggagagccagtgctgcgaaggcggcgaccgcggcgcctcctcctcatcat 21055699
Query: 122 g 122
|
Sbjct: 21055698 g 21055698
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,792,951
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 5
Length of query: 1017
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 996
Effective length of database: 2,808,413,156
Effective search space: 2797179503376
Effective search space used: 2797179503376
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)