Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007365
(1560 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029404.1| leukocyte surface antigen CD53 [Bos taurus]. 346 4e-95
Alignment gi|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus]. 142 6e-34
Alignment gi|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus]. 142 6e-34
Alignment gi|NP_001095322.1| tetraspanin-4 [Bos taurus]. 141 2e-33
Alignment gi|NP_001091459.1| CD82 molecule [Bos taurus]. 84 5e-16
Alignment gi|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos... 84 5e-16
Alignment gi|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos... 84 5e-16
Alignment gi|NP_991372.1| CD63 antigen [Bos taurus]. 82 1e-15
Alignment gi|NP_001030424.1| CD151 antigen [Bos taurus]. 82 2e-15
Alignment gi|NP_776325.1| CD9 antigen [Bos taurus]. 79 1e-14
>ref|NP_001029404.1| leukocyte surface antigen CD53 [Bos taurus].
Length = 219
Score = 346 bits (887), Expect = 4e-95
Identities = 166/219 (75%), Positives = 179/219 (81%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 399
MG+SSLKLLK+VLFFFNL+FWFCGCCILG GIYLLIH+ FGVLFH LPSLTLGNVL+IVG
Sbjct: 1 MGMSSLKLLKFVLFFFNLIFWFCGCCILGLGIYLLIHSKFGVLFHNLPSLTLGNVLVIVG 60
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
S+IMVVAFLGCMGSIKENKC VYE KL YVAEGLT+
Sbjct: 61 SVIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEQKLKEYVAEGLTE 120
Query: 580 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 759
SI RY+SDNSTKAAWDSIQ+FLQCCG+NGTSDW PP SCP S VKGC+++AK WFHS
Sbjct: 121 SIQRYNSDNSTKAAWDSIQSFLQCCGVNGTSDWTSGPPASCPKGSAVKGCYIQAKQWFHS 180
Query: 760 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
NFLYIGI TICVCVIQVLGMSFALTLNCQIDKTSQVLGL
Sbjct: 181 NFLYIGITTICVCVIQVLGMSFALTLNCQIDKTSQVLGL 219
>ref|XP_002687939.1| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 142 bits (359), Expect = 6e-34
Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 20/236 (8%)
Frame = +1
Query: 217 SMGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLII 393
+M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I
Sbjct: 91 NMARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIA 150
Query: 394 VGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGL 573
+G+I+MV FLGC+G+IKEN+C VY K+N + L
Sbjct: 151 IGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKKDL 210
Query: 574 TDSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDW------HGRPPTSCPTDSQ---- 717
+ + Y+S+N+ K AW+ IQ + CCG+ DW + P C +SQ
Sbjct: 211 KEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYKDWFSVLGENTVPDRCCMENSQGCGQ 270
Query: 718 -------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K WF N +G + +C+ + Q+LGM+F++TL I +T +
Sbjct: 271 NNTTLVWKTGCYEKVTQWFADNKHVLGTVGMCLLITQILGMAFSMTLFQHIHRTGK 326
>ref|XP_591728.4| PREDICTED: tetraspanin 9-like [Bos taurus].
Length = 330
Score = 142 bits (359), Expect = 6e-34
Identities = 78/236 (33%), Positives = 119/236 (50%), Gaps = 20/236 (8%)
Frame = +1
Query: 217 SMGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLII 393
+M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I
Sbjct: 91 NMARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIA 150
Query: 394 VGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGL 573
+G+I+MV FLGC+G+IKEN+C VY K+N + L
Sbjct: 151 IGTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKKDL 210
Query: 574 TDSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDW------HGRPPTSCPTDSQ---- 717
+ + Y+S+N+ K AW+ IQ + CCG+ DW + P C +SQ
Sbjct: 211 KEGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYKDWFSVLGENTVPDRCCMENSQGCGQ 270
Query: 718 -------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K WF N +G + +C+ + Q+LGM+F++TL I +T +
Sbjct: 271 NNTTLVWKTGCYEKVTQWFADNKHVLGTVGMCLLITQILGMAFSMTLFQHIHRTGK 326
>ref|NP_001095322.1| tetraspanin-4 [Bos taurus].
Length = 238
Score = 141 bits (355), Expect = 2e-33
Identities = 75/230 (32%), Positives = 112/230 (48%), Gaps = 20/230 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L+ +KY++F FNLLFW GC ILG GI+L +F L PSL+ N+LI+
Sbjct: 1 MARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNFATLSSSFPSLSAANLLIVT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y L
Sbjct: 61 GAFVMAIGFVGCIGAIKENKCLLLTFFVALLLVFLLEACITILFFAYTDKIDRYAQRDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTPGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQI 849
P C+ K+W N L +G+ +C ++Q+LG++FA+T+ CQ+
Sbjct: 181 APGTWWKAPCYETVKMWLQENLLAVGVFGLCTALVQILGLTFAMTMYCQV 230
>ref|NP_001091459.1| CD82 molecule [Bos taurus].
Length = 268
Score = 83.6 bits (205), Expect = 5e-16
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 47/253 (18%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTL---GNVLI 390
MG + +K+ KY LF FNLLF+ G ILGFG+++L+ + + + S + V I
Sbjct: 1 MGSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VG++ M++ FLGC+G++KE +C +L +
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 571 LTDSIHRY--HSDNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSC---- 702
+T IH Y S ++ + AWD +Q ++CCG +W P SC
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSD 180
Query: 703 --------------------------PTDSQV--KGCFVKAKLWFHSNFLYIGIITICVC 798
P D V +GC K + W N I + + V
Sbjct: 181 EDDALMMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVA 240
Query: 799 VIQVLGMSFALTL 837
VI++LGM ++ L
Sbjct: 241 VIELLGMFLSMFL 253
>ref|XP_002701454.1| PREDICTED: CD82 molecule-like isoform 2 [Bos taurus].
Length = 268
Score = 83.6 bits (205), Expect = 5e-16
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 47/253 (18%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTL---GNVLI 390
MG + +K+ KY LF FNLLF+ G ILGFG+++L+ + + + S + V I
Sbjct: 1 MGSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VG++ M++ FLGC+G++KE +C +L +
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 571 LTDSIHRY--HSDNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSC---- 702
+T IH Y S ++ + AWD +Q ++CCG +W P SC
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSD 180
Query: 703 --------------------------PTDSQV--KGCFVKAKLWFHSNFLYIGIITICVC 798
P D V +GC K + W N I + + V
Sbjct: 181 EDDALMMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVA 240
Query: 799 VIQVLGMSFALTL 837
VI++LGM ++ L
Sbjct: 241 VIELLGMFLSMFL 253
>ref|XP_002701453.1| PREDICTED: CD82 molecule-like isoform 1 [Bos taurus].
Length = 268
Score = 83.6 bits (205), Expect = 5e-16
Identities = 66/253 (26%), Positives = 104/253 (41%), Gaps = 47/253 (18%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTL---GNVLI 390
MG + +K+ KY LF FNLLF+ G ILGFG+++L+ + + + S + V I
Sbjct: 1 MGSACIKVTKYFLFLFNLLFFVLGAVILGFGMWILVDKNSFISILQTSSTSFKVAAYVFI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VG++ M++ FLGC+G++KE +C +L +
Sbjct: 61 SVGALTMLMGFLGCLGAVKEVRCLLGMYFAFLLLILIAQVTAGVFFYFNMGQLKQEMGSI 120
Query: 571 LTDSIHRY--HSDNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSC---- 702
+T IH Y S ++ + AWD +Q ++CCG +W P SC
Sbjct: 121 VTKLIHNYTDGSGDNLQEAWDYVQAQVKCCGWVSYLNWTENTELMNRTSITFPCSCKKSD 180
Query: 703 --------------------------PTDSQV--KGCFVKAKLWFHSNFLYIGIITICVC 798
P D V +GC K + W N I + + V
Sbjct: 181 EDDALMMPQKGFCEVPFGNKTQSGNNPKDWPVYQEGCMEKVQGWLQENLGVILGVCVGVA 240
Query: 799 VIQVLGMSFALTL 837
VI++LGM ++ L
Sbjct: 241 VIELLGMFLSMFL 253
>ref|NP_991372.1| CD63 antigen [Bos taurus].
Length = 237
Score = 82.0 bits (201), Expect = 1e-15
Identities = 55/224 (24%), Positives = 90/224 (40%), Gaps = 23/224 (10%)
Frame = +1
Query: 235 LKLLKYVLFFFNLLFWFCGCCI----LGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVGS 402
+K +K++L+ LL FC C + +G G +L+++ + PS L V+I VG+
Sbjct: 7 MKCVKFLLYV--LLLVFCACAVGLIAVGVGTHLVLNQT--ITHGATPSFLLPVVIIAVGA 62
Query: 403 IIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDS 582
+ +VAF+GC G+ KEN C V+ K+ +
Sbjct: 63 FLFLVAFVGCCGACKENYCLMITFAIFLSLIMLVEVAAAIAGYVFRDKVRSEFNKDFRQQ 122
Query: 583 IHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWH------GRPPTSC-------------P 705
+ Y DN T + D +Q +CCG +DW + P SC
Sbjct: 123 MKNYPKDNQTASILDKMQKDFECCGAANYTDWEKILAVTNKVPDSCCVNITHNCGINFVV 182
Query: 706 TDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
D +GC K W N L + + + +++LG+ A L
Sbjct: 183 KDIHTEGCVEKIAAWLRKNVLVVVAAALGIAFVEILGIVLACCL 226
>ref|NP_001030424.1| CD151 antigen [Bos taurus].
Length = 253
Score = 81.6 bits (200), Expect = 2e-15
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 31/229 (13%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIY-LLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMVVA 420
LKY+LF FN FW G ++ GI+ L + +D+ L L +L++ G ++MV
Sbjct: 16 LKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGIVVMVTG 75
Query: 421 FLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSI-HRYH 597
LGC + KE + +Y +LN + E L D++ RYH
Sbjct: 76 ALGCCATFKERRNLLRLYFGLLLIIFLLEIIAGALAYIYYQQLNAELKENLKDTMTRRYH 135
Query: 598 --SDNSTKAAWDSIQTFLQCCGINGTSDWH-----------GR--PPTSCPT-------- 708
+A D +Q CCG N + DW GR P + C T
Sbjct: 136 QPGHEGVTSAVDKLQQEFHCCGSNNSRDWQDSEWIHSGEAGGRVVPDSCCKTVVPGCGRR 195
Query: 709 --DSQV----KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
S + GC K + + + IG + + + +QV GM F L
Sbjct: 196 DHASNIYKVEGGCITKLETFIQEHLRIIGAVGLGIACVQVFGMLFTCCL 244
>ref|NP_776325.1| CD9 antigen [Bos taurus].
Length = 226
Score = 78.6 bits (192), Expect = 1e-14
Identities = 52/219 (23%), Positives = 97/219 (44%), Gaps = 8/219 (3%)
Frame = +1
Query: 238 KLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPS----LTLGNVLIIVGSI 405
K +KY+LF FN +FW G +L G++L + +F + + T +LI G++
Sbjct: 8 KCIKYLLFGFNFIFWLAGIAVLSVGLWLRFDSQTKSIFEQENNDSSFYTGVYILIGAGAL 67
Query: 406 IMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSI 585
+M+V FLGC G+++E++C ++ ++ V + D+
Sbjct: 68 MMLVGFLGCCGAVQESQCMLGLFFSFLLVIFAIEVAAAIWGYSHKEEVIKEVQKFYEDTY 127
Query: 586 HRY-HSDNSTKAAWDSIQTFLQCCGINGTSD---WHGRPPTSCPTDSQVKGCFVKAKLWF 753
++ + D + +I L CCG+ G + PP + + + C F
Sbjct: 128 NKLKNKDEPQRETLKAIHIALDCCGLTGVPEQFLTDTCPPKNLIDSLKTRPCPEAIDEIF 187
Query: 754 HSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVL 870
S F IG + I + V+ + GM F++ L C I + ++
Sbjct: 188 RSKFHIIGAVGIGIAVVMIFGMVFSMILCCAIRRNRDMV 226
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 56,089,181
Number of extensions: 1427242
Number of successful extensions: 4067
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4003
Number of HSP's successfully gapped: 30
Length of query: 520
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,140,958
Effective search space: 5840215654
Effective search space used: 5840215654
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007365
(1560 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852492.1| PREDICTED: similar to CD53 antigen isoform 1 [C... 330 3e-90
Alignment gi|XP_865804.1| PREDICTED: similar to CD53 antigen isoform 2 [C... 203 3e-52
Alignment gi|XP_854630.1| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (... 149 7e-36
Alignment gi|XP_854185.1| PREDICTED: similar to Tetraspanin-4 (Tspan-4) (... 117 2e-26
Alignment gi|XP_541497.2| PREDICTED: similar to Leukocyte antigen CD37 (T... 86 1e-16
Alignment gi|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible m... 82 2e-15
Alignment gi|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [... 82 2e-15
Alignment gi|XP_531678.2| PREDICTED: similar to transmembrane 4 superfami... 81 2e-15
Alignment gi|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [... 79 1e-14
Alignment gi|XP_532430.2| PREDICTED: similar to CG4591-PA [Canis familiar... 78 3e-14
>ref|XP_852492.1| PREDICTED: similar to CD53 antigen isoform 1 [Canis familiaris].
Length = 215
Score = 330 bits (845), Expect = 3e-90
Identities = 160/219 (73%), Positives = 174/219 (79%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 399
MG+S LKLLKYVLFFFNLLFWFCGCCILGFGIY LIHN+F +L SLTLGNVL+IVG
Sbjct: 1 MGMSGLKLLKYVLFFFNLLFWFCGCCILGFGIYFLIHNNFRLLL----SLTLGNVLVIVG 56
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
SIIMVVAFLGCMGSIKENKC VYE KLN YV+E LTD
Sbjct: 57 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNDYVSESLTD 116
Query: 580 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 759
SI +YH DNST+A WDSIQ+ LQCCG+NGTSDW+G PP SCP+D QV+GC+ K KLWFHS
Sbjct: 117 SIKQYHLDNSTRATWDSIQSVLQCCGVNGTSDWNGHPPKSCPSDPQVQGCYAKVKLWFHS 176
Query: 760 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
NFL+IGIITICVCVIQVLGMSFALTLNCQIDKTSQ LGL
Sbjct: 177 NFLHIGIITICVCVIQVLGMSFALTLNCQIDKTSQTLGL 215
>ref|XP_865804.1| PREDICTED: similar to CD53 antigen isoform 2 [Canis familiaris].
Length = 137
Score = 203 bits (517), Expect = 3e-52
Identities = 92/115 (80%), Positives = 102/115 (88%)
Frame = +1
Query: 532 VYEPKLNVYVAEGLTDSIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTD 711
VYE KLN YV+E LTDSI +YH DNST+A WDSIQ+ LQCCG+NGTSDW+G PP SCP+D
Sbjct: 23 VYEQKLNDYVSESLTDSIKQYHLDNSTRATWDSIQSVLQCCGVNGTSDWNGHPPKSCPSD 82
Query: 712 SQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
QV+GC+ K KLWFHSNFL+IGIITICVCVIQVLGMSFALTLNCQIDKTSQ LGL
Sbjct: 83 PQVQGCYAKVKLWFHSNFLHIGIITICVCVIQVLGMSFALTLNCQIDKTSQTLGL 137
>ref|XP_854630.1| PREDICTED: similar to Tetraspanin-9 (Tspan-9) (Tetraspan NET-5)
[Canis familiaris].
Length = 330
Score = 149 bits (376), Expect = 7e-36
Identities = 79/236 (33%), Positives = 124/236 (52%), Gaps = 20/236 (8%)
Frame = +1
Query: 217 SMGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLII 393
+M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I
Sbjct: 91 NMARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIA 150
Query: 394 VGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGL 573
+G+I+MV FLGC+G+IKENKC VY K+N + L
Sbjct: 151 IGTIVMVTGFLGCLGAIKENKCLLLSFFIVLLIILLAELILLILFFVYMDKVNENARKDL 210
Query: 574 TDSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWHG------RPPTSCPTDSQ---- 717
+ + Y+++N+ K AW+ IQ ++CCG+ +DW+ P C +SQ
Sbjct: 211 KEGLLLYNTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENMVPDRCCMENSQGCGR 270
Query: 718 -------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K K+WF N +G + +C+ ++Q+LGM+F++TL I +T +
Sbjct: 271 NTTTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGK 326
>ref|XP_854185.1| PREDICTED: similar to Tetraspanin-4 (Tspan-4) (Transmembrane 4
superfamily member 7) (Novel antigen 2) (NAG-2) [Canis
familiaris].
Length = 257
Score = 117 bits (294), Expect = 2e-26
Identities = 65/209 (31%), Positives = 98/209 (46%), Gaps = 20/209 (9%)
Frame = +1
Query: 289 GCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIVGSIIMVVAFLGCMGSIKENKCXX 465
GC ILG GI+L +F L PSL+ N+LI+ G+ +M + F+GC+G+IKE+KC
Sbjct: 43 GCGILGVGIWLAATQGNFATLSSSFPSLSAANLLIVTGTFVMAIGFVGCIGAIKEHKCLL 102
Query: 466 XXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSIHRYHSDNST--KAAWDSIQT 639
Y K++ Y + L +H Y + + AW IQT
Sbjct: 103 LTFFVTLLLVLLLEVTVTVLFFAYTDKIDRYAQQDLKKGLHLYGTPGNVGLTNAWSIIQT 162
Query: 640 FLQCCGINGTSDWH-----GRPPTSC------------PTDSQVKGCFVKAKLWFHSNFL 768
+CCG++ +DW R P SC P C+ K W N L
Sbjct: 163 DFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWWKAPCYETVKTWLQENLL 222
Query: 769 YIGIITICVCVIQVLGMSFALTLNCQIDK 855
+GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 223 AVGIFGLCTALVQLLGLTFAMTMYCQVVK 251
>ref|XP_541497.2| PREDICTED: similar to Leukocyte antigen CD37 (Tetraspanin-26)
(Tspan-26) isoform 1 [Canis familiaris].
Length = 281
Score = 85.5 bits (210), Expect = 1e-16
Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 18/193 (9%)
Frame = +1
Query: 229 SSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTL---GNVLIIVG 399
S L L+KY+LF FNL F+ G I FGI++LI V F L + L L I G
Sbjct: 6 SCLSLIKYLLFVFNLFFFVLGSLIFCFGIWILIDKTSFVSFVGLSFIPLQIWSKALAISG 65
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
+ M +A LGC+G++KE +C +L V + + +
Sbjct: 66 ILTMGLALLGCVGALKELRCLLGLYFGVLLLLFATQITLGILISTQRMRLERRVKDIVME 125
Query: 580 SIHRYHS---DNSTKAAWDSIQTFLQCCGINGTSDWHGRP------------PTSCPTDS 714
+I YHS +++ + +WD +Q L+CCG N DW G P P SC S
Sbjct: 126 TIQNYHSRPEESAAEESWDYVQFQLRCCGWNSPRDWFGIPSLSSNASDVHRVPCSCYNSS 185
Query: 715 QVKGCFVKAKLWF 753
+ KL F
Sbjct: 186 ATNDSAIFEKLSF 198
>ref|XP_854142.1| PREDICTED: similar to CD82 antigen (Inducible membrane protein R2)
(C33 antigen) (IA4) (Metastasis suppressor Kangai 1)
(Suppressor of tumorigenicity-6) (Tetraspanin-27)
(Tspan-27) [Canis familiaris].
Length = 455
Score = 81.6 bits (200), Expect = 2e-15
Identities = 69/266 (25%), Positives = 101/266 (37%), Gaps = 43/266 (16%)
Frame = +1
Query: 169 CLKDRGKVPAKGQEYLSMGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHND--FG 342
C + PA MG + +K+ KY LF FNLLF+ G ILGFG+++L
Sbjct: 175 CGAEHPAQPAGSSRTGRMGSACIKVTKYFLFLFNLLFFILGAVILGFGVWILADRSSFIS 234
Query: 343 VLFHKLPSLTLGN-VLIIVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXX 519
VL SL +G V I VG++ M + FLGC+G+IKE +C
Sbjct: 235 VLQTSSNSLKVGACVFIGVGAVTMFMGFLGCIGAIKEVRCLLGLYFAFLLLMLIVQVAAG 294
Query: 520 XXXXVYEPKLNVYVAEGLTDSIHRYH--SDNSTKAAWDSIQTFLQCCGINGTSDWHGRP- 690
KL + + I Y ++ + AWD +Q ++CCG +W
Sbjct: 295 VLFYFSTGKLKQEMGSIVMKLIQDYKDGQEDRLQEAWDYVQAQVRCCGWASFYNWTDNAE 354
Query: 691 ---------PTSCPTDSQV----------------------------KGCFVKAKLWFHS 759
P SC + GC K + W
Sbjct: 355 LMNRTNVTYPCSCEDKREADDSFLVRKGFCEAFNSTRTESGNNPEYWPGCMKKVQAWLQE 414
Query: 760 NFLYIGIITICVCVIQVLGMSFALTL 837
N I + + V VI++LGM ++ L
Sbjct: 415 NVGIILGVCVGVAVIELLGMLLSICL 440
>ref|XP_533198.1| PREDICTED: similar to CD151 antigen isoform 1 [Canis familiaris].
Length = 252
Score = 81.6 bits (200), Expect = 2e-15
Identities = 60/229 (26%), Positives = 91/229 (39%), Gaps = 31/229 (13%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIY-LLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMVVA 420
LKY+LF FN FW G ++ GI+ L + +D+ L L +L++ G ++MV
Sbjct: 15 LKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGVVVMVTG 74
Query: 421 FLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSI-HRYH 597
LGC + KE + +Y +LN + + L D++ RYH
Sbjct: 75 VLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKDTMTKRYH 134
Query: 598 --SDNSTKAAWDSIQTFLQCCGINGTSDWH-----------GR--PPTSCPT-------- 708
+A D +Q CCG N + DW GR P + C T
Sbjct: 135 QPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCKTVVPGCGQR 194
Query: 709 --DSQV----KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
S + GC K + + + IG + I + +QV GM F L
Sbjct: 195 DHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCL 243
>ref|XP_531678.2| PREDICTED: similar to transmembrane 4 superfamily member 3 [Canis
familiaris].
Length = 237
Score = 81.3 bits (199), Expect = 2e-15
Identities = 64/227 (28%), Positives = 100/227 (44%), Gaps = 25/227 (11%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLG----NVLIIVGSIIM 411
+KY +F FN LFW CG IL I++ + D + S T N+LI VGSIIM
Sbjct: 8 IKYSMFIFNFLFWLCGILILAVAIWVRLSKDGQEILSPGDSGTSPYIAVNILIAVGSIIM 67
Query: 412 VVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSIHR 591
++ FLGC G+++E++C ++ + + E L ++I
Sbjct: 68 ILGFLGCCGAVRESRCMLLLFFIGLLLILLLQVAAGILGATFKSESERILNETLHENIKL 127
Query: 592 YH-SDNSTKA---AWDSIQTFLQCCG-INGTSDW-------HGRPPTSCPTDSQV----- 720
+D + KA A Q +CCG +NG +DW + S +DS V
Sbjct: 128 LSAADENAKAFQKALTEFQNEFKCCGLVNGAADWGNNFQENYKSCECSSLSDSCVMYDGK 187
Query: 721 ----KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQI 849
+ C K + L + I + VI++LG+ F++ L CQI
Sbjct: 188 NVYKQPCISLIKEVVAKHILIVIGIAFGLAVIEILGLVFSMVLYCQI 234
>ref|XP_862412.1| PREDICTED: similar to CD151 antigen isoform 3 [Canis familiaris].
Length = 259
Score = 79.0 bits (193), Expect = 1e-14
Identities = 60/236 (25%), Positives = 91/236 (38%), Gaps = 38/236 (16%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIY-LLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMVVA 420
LKY+LF FN FW G ++ GI+ L + +D+ L L +L++ G ++MV
Sbjct: 15 LKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGVVVMVTG 74
Query: 421 FLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSI-HRYH 597
LGC + KE + +Y +LN + + L D++ RYH
Sbjct: 75 VLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYIYYQQLNAELKDNLKDTMTKRYH 134
Query: 598 --SDNSTKAAWDSIQTFLQCCGINGTSDWH-----------GR--PPTSCPT-------- 708
+A D +Q CCG N + DW GR P + C T
Sbjct: 135 QPGHEGVTSAVDKLQQEFHCCGSNNSQDWRDSEWIRSGQAGGRVVPDSCCKTVVPGCGQR 194
Query: 709 --DSQV-----------KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
S + GC K + + + IG + I + +QV GM F L
Sbjct: 195 DHASNIYKVEVGWWMPGGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCL 250
>ref|XP_532430.2| PREDICTED: similar to CG4591-PA [Canis familiaris].
Length = 283
Score = 77.8 bits (190), Expect = 3e-14
Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 44/266 (16%)
Frame = +1
Query: 184 GKVPAKGQEYLSMGISSLKLLKYVLFFFNLLFWFCGCCILGFGIY--LLIHNDFGVLFHK 357
G A G+E+ + L+KY+LFFFN+LFW ++ G+Y L+ H + +
Sbjct: 6 GAPAAHGEEFTFVS----PLVKYLLFFFNMLFWVISMVMVAVGVYARLMKHAEAALACVA 61
Query: 358 LPSLTLGNVLIIVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVY 537
+ L LI+VG ++ ++ F GC+GS++EN C V+
Sbjct: 62 VDPAIL---LIVVGILMFLLTFCGCIGSLRENICLLQTFSLCLTIVFLLQLAAGVLGFVF 118
Query: 538 EPKLNVYVAEGLTDSIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDW---------HGRP 690
K V+E + ++I Y D + D Q CCG DW P
Sbjct: 119 SDKARGKVSEIINNAIVHYRDDLDLQNLIDFGQKKFSCCGGISYKDWSLNMYFNCSEDNP 178
Query: 691 -------PTSC--PTDSQ------------------------VKGCFVKAKLWFHSNFLY 771
P SC PT +Q GC K W HSN +
Sbjct: 179 SRERCSVPYSCCLPTPNQAVINTMCGQGMQALDYLEASKVIYTNGCIDKLVNWIHSNLFF 238
Query: 772 IGIITICVCVIQVLGMSFALTLNCQI 849
+G I + + + Q++G+ + L QI
Sbjct: 239 LGGIALGLAIPQLVGILLSQILVNQI 264
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,449,483
Number of extensions: 1462834
Number of successful extensions: 4230
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 4170
Number of HSP's successfully gapped: 34
Length of query: 520
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 413
Effective length of database: 15,307,552
Effective search space: 6322018976
Effective search space used: 6322018976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007365
(1560 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035122.1| leukocyte surface antigen CD53 [Homo sapiens]. 359 4e-99
Alignment gi|NP_000551.1| leukocyte surface antigen CD53 [Homo sapiens]. 359 4e-99
Alignment gi|NP_001161792.1| tetraspanin-9 [Homo sapiens]. 151 1e-36
Alignment gi|NP_006666.1| tetraspanin-9 [Homo sapiens]. 151 1e-36
Alignment gi|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens]. 144 2e-34
Alignment gi|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens]. 144 2e-34
Alignment gi|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens]. 144 2e-34
Alignment gi|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens]. 144 2e-34
Alignment gi|NP_001020405.1| tetraspanin-4 isoform a [Homo sapiens]. 144 2e-34
Alignment gi|NP_003262.1| tetraspanin-4 isoform a [Homo sapiens]. 144 2e-34
>ref|NP_001035122.1| leukocyte surface antigen CD53 [Homo sapiens].
Length = 219
Score = 359 bits (921), Expect = 4e-99
Identities = 171/219 (78%), Positives = 183/219 (83%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 399
MG+SSLKLLKYVLFFFNLLFW CGCCILGFGIYLLIHN+FGVLFH LPSLTLGNV +IVG
Sbjct: 1 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG 60
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
SIIMVVAFLGCMGSIKENKC VYE KLN YVA+GLTD
Sbjct: 61 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD 120
Query: 580 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 759
SIHRYHSDNSTKAAWDSIQ+FLQCCGINGTSDW PP SCP+D +V+GC+ KA+LWFHS
Sbjct: 121 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS 180
Query: 760 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
NFLYIGIITICVCVI+VLGMSFALTLNCQIDKTSQ +GL
Sbjct: 181 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL 219
>ref|NP_000551.1| leukocyte surface antigen CD53 [Homo sapiens].
Length = 219
Score = 359 bits (921), Expect = 4e-99
Identities = 171/219 (78%), Positives = 183/219 (83%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 399
MG+SSLKLLKYVLFFFNLLFW CGCCILGFGIYLLIHN+FGVLFH LPSLTLGNV +IVG
Sbjct: 1 MGMSSLKLLKYVLFFFNLLFWICGCCILGFGIYLLIHNNFGVLFHNLPSLTLGNVFVIVG 60
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
SIIMVVAFLGCMGSIKENKC VYE KLN YVA+GLTD
Sbjct: 61 SIIMVVAFLGCMGSIKENKCLLMSFFILLLIILLAEVTLAILLFVYEQKLNEYVAKGLTD 120
Query: 580 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 759
SIHRYHSDNSTKAAWDSIQ+FLQCCGINGTSDW PP SCP+D +V+GC+ KA+LWFHS
Sbjct: 121 SIHRYHSDNSTKAAWDSIQSFLQCCGINGTSDWTSGPPASCPSDRKVEGCYAKARLWFHS 180
Query: 760 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
NFLYIGIITICVCVI+VLGMSFALTLNCQIDKTSQ +GL
Sbjct: 181 NFLYIGIITICVCVIEVLGMSFALTLNCQIDKTSQTIGL 219
>ref|NP_001161792.1| tetraspanin-9 [Homo sapiens].
Length = 239
Score = 151 bits (382), Expect = 1e-36
Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 20/235 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I +
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+I+MV FLGC+G+IKENKC VY K+N + L
Sbjct: 61 GTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH------GRPPTSCPTDSQ----- 717
+ + YH++N+ K AW+ IQ ++CCG+ +DW+ P C +SQ
Sbjct: 121 EGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN 180
Query: 718 ------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K K+WF N +G + +C+ ++Q+LGM+F++TL I +T +
Sbjct: 181 ATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGK 235
>ref|NP_006666.1| tetraspanin-9 [Homo sapiens].
Length = 239
Score = 151 bits (382), Expect = 1e-36
Identities = 80/235 (34%), Positives = 123/235 (52%), Gaps = 20/235 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I +
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+I+MV FLGC+G+IKENKC VY K+N + L
Sbjct: 61 GTIVMVTGFLGCLGAIKENKCLLLSFFIVLLVILLAELILLILFFVYMDKVNENAKKDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH------GRPPTSCPTDSQ----- 717
+ + YH++N+ K AW+ IQ ++CCG+ +DW+ P C +SQ
Sbjct: 121 EGLLLYHTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN 180
Query: 718 ------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K K+WF N +G + +C+ ++Q+LGM+F++TL I +T +
Sbjct: 181 ATTPLWRTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGK 235
>ref|NP_001020409.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 144 bits (364), Expect = 2e-34
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M + L+ +KY++F FNLLFW GC +LG GI+L F L PSL+ N+LII
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y + L
Sbjct: 61 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_001020408.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 144 bits (364), Expect = 2e-34
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M + L+ +KY++F FNLLFW GC +LG GI+L F L PSL+ N+LII
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y + L
Sbjct: 61 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_001020407.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 144 bits (364), Expect = 2e-34
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M + L+ +KY++F FNLLFW GC +LG GI+L F L PSL+ N+LII
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y + L
Sbjct: 61 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_001020406.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 144 bits (364), Expect = 2e-34
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M + L+ +KY++F FNLLFW GC +LG GI+L F L PSL+ N+LII
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y + L
Sbjct: 61 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_001020405.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 144 bits (364), Expect = 2e-34
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M + L+ +KY++F FNLLFW GC +LG GI+L F L PSL+ N+LII
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y + L
Sbjct: 61 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_003262.1| tetraspanin-4 isoform a [Homo sapiens].
Length = 238
Score = 144 bits (364), Expect = 2e-34
Identities = 77/232 (33%), Positives = 114/232 (49%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M + L+ +KY++F FNLLFW GC +LG GI+L F L PSL+ N+LII
Sbjct: 1 MARACLQAVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGSFATLSSSFPSLSAANLLIIT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G+IKENKC Y K++ Y + L
Sbjct: 61 GAFVMAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKVWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,657,947
Number of extensions: 1463774
Number of successful extensions: 4305
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 4218
Number of HSP's successfully gapped: 39
Length of query: 520
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 413
Effective length of database: 14,770,016
Effective search space: 6100016608
Effective search space used: 6100016608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007365
(1560 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031677.1| leukocyte surface antigen CD53 [Mus musculus]. 325 8e-89
Alignment gi|NP_780623.1| tetraspanin-9 [Mus musculus]. 149 5e-36
Alignment gi|NP_444312.1| tetraspanin-4 [Mus musculus]. 142 7e-34
Alignment gi|NP_001162151.1| tetraspanin 8 [Mus musculus]. 103 5e-22
Alignment gi|NP_001162150.1| tetraspanin 8 [Mus musculus]. 103 5e-22
Alignment gi|NP_666122.1| tetraspanin 8 [Mus musculus]. 103 5e-22
Alignment gi|NP_031682.1| CD82 antigen isoform 1 [Mus musculus]. 87 4e-17
Alignment gi|NP_001129527.1| CD82 antigen isoform 2 [Mus musculus]. 87 4e-17
Alignment gi|NP_001104520.1| CD151 antigen [Mus musculus]. 84 2e-16
Alignment gi|NP_001104519.1| CD151 antigen [Mus musculus]. 84 2e-16
>ref|NP_031677.1| leukocyte surface antigen CD53 [Mus musculus].
Length = 219
Score = 325 bits (832), Expect = 8e-89
Identities = 157/219 (71%), Positives = 169/219 (77%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 399
MG+SSLKLLKYVLF FNLLFW CGCCILGFGIY L+ N +GVLF LP LTLGN+L+IVG
Sbjct: 1 MGMSSLKLLKYVLFIFNLLFWVCGCCILGFGIYFLVQNTYGVLFRNLPFLTLGNILVIVG 60
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
SIIMVVAFLGCMGSIKENKC VYE KLN VAEGL D
Sbjct: 61 SIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTIAILLFVYEQKLNTLVAEGLND 120
Query: 580 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 759
SI YHSDNST AWD IQT LQCCG+NG+SDW PP+SCP+ + V+GC+ KAK WFHS
Sbjct: 121 SIQHYHSDNSTMKAWDFIQTQLQCCGVNGSSDWTSGPPSSCPSGADVQGCYNKAKSWFHS 180
Query: 760 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ LGL
Sbjct: 181 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQALGL 219
>ref|NP_780623.1| tetraspanin-9 [Mus musculus].
Length = 239
Score = 149 bits (377), Expect = 5e-36
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 20/235 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L LKY +F FNL+FW CGC +LG GI+L + +F PSL+ N++I +
Sbjct: 1 MARGCLCCLKYTMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+I+MV FLGC+G+IKENKC VY K+N + L
Sbjct: 61 GTIVMVTGFLGCLGAIKENKCLLLSFFIVLLIILLAELILIILFFVYMDKVNENAKQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH------GRPPTSCPTDSQ----- 717
+ + Y+++N+ K AW+ IQ ++CCG+ +DW+ P C +SQ
Sbjct: 121 EGLLLYNTENNVGLKNAWNIIQAEMRCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN 180
Query: 718 ------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K KLWF N +G + +C+ ++Q+LGM+F++TL I +T +
Sbjct: 181 STTPLWRTGCYEKVKLWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGK 235
>ref|NP_444312.1| tetraspanin-4 [Mus musculus].
Length = 238
Score = 142 bits (358), Expect = 7e-34
Identities = 75/232 (32%), Positives = 113/232 (48%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L+ +KY++F FNLLFW GC +LG GI+L +F L PSL+ N+LI+
Sbjct: 1 MARGCLQGVKYLMFAFNLLFWLGGCGVLGVGIWLAATQGNFATLSSSFPSLSAANLLIVT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+ +M + F+GC+G++KENKC Y K++ Y + L
Sbjct: 61 GTFVMAIGFVGCIGALKENKCLLLTFFVLLLLVFLLEATIAVLFFAYSDKIDSYAQQDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTQGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSDSCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K W N L +GI +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 EPGTWWKSPCYETVKAWLQENLLAVGIFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_001162151.1| tetraspanin 8 [Mus musculus].
Length = 235
Score = 103 bits (256), Expect = 5e-22
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Frame = +1
Query: 223 GISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLT----LGNVLI 390
G+SS LKY +FFFN LFW CG ILG I++ + D + S T N+LI
Sbjct: 3 GVSSC--LKYSMFFFNFLFWVCGTLILGLAIWVRVSKDGKEIITSGDSSTNPFIAVNILI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VGSIIMV+ FLGC G++KE++C ++P+ N + E
Sbjct: 61 AVGSIIMVLGFLGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNET 120
Query: 571 LTDSIHRYHSDNSTKA-----AWDSIQTFLQCCGI-NGTSDWHGR----------PPTSC 702
L ++ + SDN+ +A A Q+ +CCG+ NG +DW T C
Sbjct: 121 LYENA-KLLSDNTDEAKDFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDC 179
Query: 703 PT--DSQV--KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQI 849
T S V K C K F N + + I + VI++LG+ F++ L CQI
Sbjct: 180 ATYQGSSVYPKTCLSLIKDLFEKNIIIVIGIAFGLAVIEILGLVFSMVLYCQI 232
>ref|NP_001162150.1| tetraspanin 8 [Mus musculus].
Length = 235
Score = 103 bits (256), Expect = 5e-22
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Frame = +1
Query: 223 GISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLT----LGNVLI 390
G+SS LKY +FFFN LFW CG ILG I++ + D + S T N+LI
Sbjct: 3 GVSSC--LKYSMFFFNFLFWVCGTLILGLAIWVRVSKDGKEIITSGDSSTNPFIAVNILI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VGSIIMV+ FLGC G++KE++C ++P+ N + E
Sbjct: 61 AVGSIIMVLGFLGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNET 120
Query: 571 LTDSIHRYHSDNSTKA-----AWDSIQTFLQCCGI-NGTSDWHGR----------PPTSC 702
L ++ + SDN+ +A A Q+ +CCG+ NG +DW T C
Sbjct: 121 LYENA-KLLSDNTDEAKDFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDC 179
Query: 703 PT--DSQV--KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQI 849
T S V K C K F N + + I + VI++LG+ F++ L CQI
Sbjct: 180 ATYQGSSVYPKTCLSLIKDLFEKNIIIVIGIAFGLAVIEILGLVFSMVLYCQI 232
>ref|NP_666122.1| tetraspanin 8 [Mus musculus].
Length = 235
Score = 103 bits (256), Expect = 5e-22
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 24/233 (10%)
Frame = +1
Query: 223 GISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLT----LGNVLI 390
G+SS LKY +FFFN LFW CG ILG I++ + D + S T N+LI
Sbjct: 3 GVSSC--LKYSMFFFNFLFWVCGTLILGLAIWVRVSKDGKEIITSGDSSTNPFIAVNILI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VGSIIMV+ FLGC G++KE++C ++P+ N + E
Sbjct: 61 AVGSIIMVLGFLGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNET 120
Query: 571 LTDSIHRYHSDNSTKA-----AWDSIQTFLQCCGI-NGTSDWHGR----------PPTSC 702
L ++ + SDN+ +A A Q+ +CCG+ NG +DW T C
Sbjct: 121 LYENA-KLLSDNTDEAKDFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDC 179
Query: 703 PT--DSQV--KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQI 849
T S V K C K F N + + I + VI++LG+ F++ L CQI
Sbjct: 180 ATYQGSSVYPKTCLSLIKDLFEKNIIIVIGIAFGLAVIEILGLVFSMVLYCQI 232
>ref|NP_031682.1| CD82 antigen isoform 1 [Mus musculus].
Length = 266
Score = 87.0 bits (214), Expect = 4e-17
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 45/251 (17%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHND--FGVLFHKLPSLTLG-NVLI 390
MG +K+ KY LF FNLLF+ G ILGFG+++L + VL SL +G V I
Sbjct: 1 MGAGCVKVTKYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VG+I +V+ FLGC+G++ E +C KL +
Sbjct: 61 GVGAITIVMGFLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNT 120
Query: 571 LTDSIHRY--HSDNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSC---- 702
+ D I Y ++ +S + AWD +Q ++CCG +W P SC
Sbjct: 121 VMDIIRNYTANATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIK 180
Query: 703 ------------------------PTDSQV--KGCFVKAKLWFHSNFLYIGIITICVCVI 804
P D V +GC KA+ W NF + + V VI
Sbjct: 181 EEDNQLIVKKGFCEADNSTVSENNPEDWPVNTEGCMEKAQAWLQENFGILLGVCAGVAVI 240
Query: 805 QVLGMSFALTL 837
++LG+ ++ L
Sbjct: 241 ELLGLFLSICL 251
>ref|NP_001129527.1| CD82 antigen isoform 2 [Mus musculus].
Length = 266
Score = 87.0 bits (214), Expect = 4e-17
Identities = 70/251 (27%), Positives = 104/251 (41%), Gaps = 45/251 (17%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHND--FGVLFHKLPSLTLG-NVLI 390
MG +K+ KY LF FNLLF+ G ILGFG+++L + VL SL +G V I
Sbjct: 1 MGAGCVKVTKYFLFLFNLLFFILGAVILGFGVWILADKNSFISVLQTSSSSLQVGAYVFI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
VG+I +V+ FLGC+G++ E +C KL +
Sbjct: 61 GVGAITIVMGFLGCIGAVNEVRCLLGLYFVFLLLILIAQVTVGVLFYFNADKLKKEMGNT 120
Query: 571 LTDSIHRY--HSDNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSC---- 702
+ D I Y ++ +S + AWD +Q ++CCG +W P SC
Sbjct: 121 VMDIIRNYTANATSSREEAWDYVQAQVKCCGWVSHYNWTENEELMGFTKTTYPCSCEKIK 180
Query: 703 ------------------------PTDSQV--KGCFVKAKLWFHSNFLYIGIITICVCVI 804
P D V +GC KA+ W NF + + V VI
Sbjct: 181 EEDNQLIVKKGFCEADNSTVSENNPEDWPVNTEGCMEKAQAWLQENFGILLGVCAGVAVI 240
Query: 805 QVLGMSFALTL 837
++LG+ ++ L
Sbjct: 241 ELLGLFLSICL 251
>ref|NP_001104520.1| CD151 antigen [Mus musculus].
Length = 253
Score = 84.3 bits (207), Expect = 2e-16
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 31/229 (13%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIY-LLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMVVA 420
LKY+LF +N FW G ++ GI+ L + +D+ L L +L++ G ++MV
Sbjct: 16 LKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVTG 75
Query: 421 FLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDS-IHRYH 597
LGC + KE + VY +LN + E L D+ + RYH
Sbjct: 76 VLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRYH 135
Query: 598 SD--NSTKAAWDSIQTFLQCCGINGTSDWH-------GRPPTSCPTDSQVK--------- 723
+A D +Q CCG N + DW G + DS K
Sbjct: 136 QSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMVAGCGKR 195
Query: 724 -----------GCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
GC K + + + IG + I + +QV GM F L
Sbjct: 196 DHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCL 244
>ref|NP_001104519.1| CD151 antigen [Mus musculus].
Length = 253
Score = 84.3 bits (207), Expect = 2e-16
Identities = 59/229 (25%), Positives = 88/229 (38%), Gaps = 31/229 (13%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIY-LLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMVVA 420
LKY+LF +N FW G ++ GI+ L + +D+ L L +L++ G ++MV
Sbjct: 16 LKYLLFTYNCCFWLAGLAVMAVGIWTLALKSDYISLLASSTYLATAYILVVAGVVVMVTG 75
Query: 421 FLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDS-IHRYH 597
LGC + KE + VY +LN + E L D+ + RYH
Sbjct: 76 VLGCCATFKERRNLLRLYFILLLIIFLLEIIAGILAYVYYQQLNTELKENLKDTMVKRYH 135
Query: 598 SD--NSTKAAWDSIQTFLQCCGINGTSDWH-------GRPPTSCPTDSQVK--------- 723
+A D +Q CCG N + DW G + DS K
Sbjct: 136 QSGHEGVSSAVDKLQQEFHCCGSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMVAGCGKR 195
Query: 724 -----------GCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
GC K + + + IG + I + +QV GM F L
Sbjct: 196 DHASNIYKVEGGCITKLETFIQEHLRVIGAVGIGIACVQVFGMIFTCCL 244
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,317,039
Number of extensions: 1253706
Number of successful extensions: 3702
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 3626
Number of HSP's successfully gapped: 29
Length of query: 520
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 414
Effective length of database: 12,433,743
Effective search space: 5147569602
Effective search space used: 5147569602
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007365
(1560 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929225.1| PREDICTED: leukocyte surface antigen CD53 [S... 401 e-112
Alignment gi|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa]. 149 4e-36
Alignment gi|NP_001070694.1| tetraspanin-9 [Sus scrofa]. 149 5e-36
Alignment gi|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa]. 140 3e-33
Alignment gi|NP_001138690.1| CD82 antigen [Sus scrofa]. 92 8e-19
Alignment gi|NP_999171.1| CD9 antigen [Sus scrofa]. 78 2e-14
Alignment gi|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa]. 77 3e-14
Alignment gi|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrof... 76 5e-14
Alignment gi|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa]. 75 1e-13
Alignment gi|XP_001929074.2| PREDICTED: tetraspanin-3 isoform 1 [Sus scro... 75 1e-13
>ref|XP_001929225.1| PREDICTED: leukocyte surface antigen CD53 [Sus scrofa].
Length = 219
Score = 401 bits (1031), Expect = e-112
Identities = 195/219 (89%), Positives = 195/219 (89%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 399
MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG
Sbjct: 1 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVG 60
Query: 400 SIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTD 579
SIIMVVAFLGCMGSIKENKC VYEPKLNVYVAEGLTD
Sbjct: 61 SIIMVVAFLGCMGSIKENKCLLMSFFVLLLIILLAEVTLAILLFVYEPKLNVYVAEGLTD 120
Query: 580 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 759
SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS
Sbjct: 121 SIHRYHSDNSTKAAWDSIQTFLQCCGINGTSDWHGRPPTSCPTDSQVKGCFVKAKLWFHS 180
Query: 760 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 876
NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL
Sbjct: 181 NFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVLGL 219
>ref|XP_003361448.1| PREDICTED: tetraspanin-9-like [Sus scrofa].
Length = 239
Score = 149 bits (376), Expect = 4e-36
Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 20/235 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I +
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+I+MV FLGC+G+IKEN+C VY K+N + L
Sbjct: 61 GTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH------GRPPTSCPTDSQ----- 717
+ + Y+S+N+ K AW+ IQ + CCG+ +DW+ P C +SQ
Sbjct: 121 EGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN 180
Query: 718 ------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K K+WF N +G + +C+ ++QVLGM+F++TL I +T +
Sbjct: 181 STTPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIMQVLGMAFSMTLFQHIHRTGK 235
>ref|NP_001070694.1| tetraspanin-9 [Sus scrofa].
Length = 239
Score = 149 bits (375), Expect = 5e-36
Identities = 79/235 (33%), Positives = 122/235 (51%), Gaps = 20/235 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L LKY++F FNL+FW CGC +LG GI+L + +F PSL+ N++I +
Sbjct: 1 MARGCLCCLKYMMFLFNLIFWLCGCGLLGVGIWLSVSQGNFATFSPSFPSLSAANLVIAI 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+I+MV FLGC+G+IKEN+C VY K+N + L
Sbjct: 61 GTIVMVTGFLGCLGAIKENRCLLLSFFIVLLIILLAELILIILFFVYMDKVNENARKDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH------GRPPTSCPTDSQ----- 717
+ + Y+S+N+ K AW+ IQ + CCG+ +DW+ P C +SQ
Sbjct: 121 EGLLLYNSENNVGLKNAWNIIQAEMHCCGVTDYTDWYPVLGENTVPDRCCMENSQGCGRN 180
Query: 718 ------VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQ 864
GC+ K K+WF N +G + +C+ ++Q+LGM+F++TL I +T +
Sbjct: 181 STTPLWKTGCYEKVKMWFDDNKHVLGTVGMCILIMQILGMAFSMTLFQHIHRTGK 235
>ref|XP_003122444.2| PREDICTED: tetraspanin-4-like [Sus scrofa].
Length = 238
Score = 140 bits (352), Expect = 3e-33
Identities = 75/232 (32%), Positives = 113/232 (48%), Gaps = 20/232 (8%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
M L+ +KY++F FNLLFW GC ILG GI+L +F L PSL+ N+LI
Sbjct: 1 MARGCLQGVKYLMFAFNLLFWLGGCGILGVGIWLAATQGNFATLSSSFPSLSAANLLIAT 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+++M + F+GC+G+IKEN+C Y K++ Y L
Sbjct: 61 GTLVMAIGFVGCIGAIKENRCLLLTFFVVLLLVFLLEATVAVLFFTYTDKIDRYAQRDLK 120
Query: 577 DSIHRYHSDNST--KAAWDSIQTFLQCCGINGTSDWH-----GRPPTSC----------- 702
+H Y + + AW IQT +CCG++ +DW R P SC
Sbjct: 121 KGLHLYGTPGNVGLTNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLH 180
Query: 703 -PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQIDK 855
P C+ K+W N L +G+ +C ++Q+LG++FA+T+ CQ+ K
Sbjct: 181 APGTWWKAPCYETVKMWLQENLLAVGVFGLCTALVQILGLTFAMTMYCQVVK 232
>ref|NP_001138690.1| CD82 antigen [Sus scrofa].
Length = 266
Score = 92.0 bits (227), Expect = 8e-19
Identities = 69/251 (27%), Positives = 103/251 (41%), Gaps = 45/251 (17%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHND--FGVLFHKLPSLTLG-NVLI 390
MG + +K+ KY LF FNLLF+ G ILGFG+++L VL SL +G + I
Sbjct: 1 MGAACIKVTKYFLFLFNLLFFVLGAVILGFGVWILADRSSFISVLQTSSTSLKVGAYIFI 60
Query: 391 IVGSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEG 570
+G+ M++ FLGC+G++ E +C KL +
Sbjct: 61 SIGAFTMLMGFLGCIGAVNEVRCLLGLYFAFLVLILIAQVAAGVLFYFNMGKLKQEMGSI 120
Query: 571 LTDSIHRYHS--DNSTKAAWDSIQTFLQCCGINGTSDWHGRP----------PTSCPTDS 714
+T+ I +Y +S + AWD +Q +QCCG +W P P SC T S
Sbjct: 121 VTELIQKYEEGRQDSLQEAWDYVQAQVQCCGWVSFYNWTENPRLMNHTNTTYPCSCKTRS 180
Query: 715 Q------------------------------VKGCFVKAKLWFHSNFLYIGIITICVCVI 804
Q +GC K + W N I + + V VI
Sbjct: 181 QNDSSLPLEKGFCHDLNGIQGGNNPDAWPVYHEGCMEKVQAWLQENLGIILGVCVGVAVI 240
Query: 805 QVLGMSFALTL 837
++LGM ++ L
Sbjct: 241 ELLGMLLSMFL 251
>ref|NP_999171.1| CD9 antigen [Sus scrofa].
Length = 226
Score = 77.8 bits (190), Expect = 2e-14
Identities = 53/219 (24%), Positives = 99/219 (45%), Gaps = 8/219 (3%)
Frame = +1
Query: 238 KLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPS----LTLGNVLIIVGSI 405
K +KY+LF FN +FW G +L G++L + +F + + T +LI G++
Sbjct: 8 KCIKYLLFGFNFIFWLAGIAVLAIGLWLRFDSQTKSIFEQENNNSSFYTGVYILIGAGAL 67
Query: 406 IMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSI 585
+MVV FLGC G+++E++C ++ ++ V + D+
Sbjct: 68 MMVVGFLGCCGAVQESQCMLGLFFGFLLVIFAIEIAAAIWGYSHKDQVIKEVQDFYRDTY 127
Query: 586 HRYH-SDNSTKAAWDSIQTFLQCCGINGTSDW---HGRPPTSCPTDSQVKGCFVKAKLWF 753
++ D+ + +I L CCG+ G + P + +K C K F
Sbjct: 128 NKLKGKDDPQRETLKAIHYALDCCGLMGEVEQLLADICPQRDVLSSLPMKPCPEAIKEVF 187
Query: 754 HSNFLYIGIITICVCVIQVLGMSFALTLNCQIDKTSQVL 870
+ F IG + I + V+ + GM F++ L C I ++ +++
Sbjct: 188 QNKFHIIGAVGIGIAVVMIFGMIFSMILCCAIRRSREMV 226
>ref|XP_003355519.1| PREDICTED: CD63 antigen [Sus scrofa].
Length = 237
Score = 76.6 bits (187), Expect = 3e-14
Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 19/220 (8%)
Frame = +1
Query: 235 LKLLKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMV 414
++ +K++L+ L F C ++ GI++ + + + P L V+I VG+ + +
Sbjct: 7 MRCVKFLLYVLLLAFCACAVGLIAVGIWVQLVLNQTITQGATPGSLLPVVIIAVGAFLFL 66
Query: 415 VAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSIHRY 594
VAF+GC G+ KEN C V+ K+ + + Y
Sbjct: 67 VAFVGCCGTCKENYCLMVTFAIFLSLIMLVEVAAAIAGYVFRDKVKAEFNKDFQQQMQNY 126
Query: 595 HSDNSTKAAWDSIQTFLQCCGINGTSDWH------GRPPTSC-------------PTDSQ 717
+N T D +Q +CCG +DW R P SC +
Sbjct: 127 PKNNHTALILDRMQEDFKCCGAANYTDWEKILLSPKRVPDSCCVNVTQHCGVNFNVKEIH 186
Query: 718 VKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
+GC K W SN L + + ++VLG+ FA L
Sbjct: 187 NEGCVEKIGSWLRSNVLVAAAAALGIAFVEVLGIVFACCL 226
>ref|NP_001230794.1| CD151 molecule (Raph blood group) [Sus scrofa].
Length = 253
Score = 76.3 bits (186), Expect = 5e-14
Identities = 55/229 (24%), Positives = 87/229 (37%), Gaps = 31/229 (13%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIY-LLIHNDFGVLFHKLPSLTLGNVLIIVGSIIMVVA 420
LKY+LF FN FW G ++ GI+ L + +D+ L L +L++ G ++MV
Sbjct: 16 LKYLLFTFNCCFWLAGLAVMAVGIWTLALKSDYISLLASGTYLATAYILVVAGIVVMVTG 75
Query: 421 FLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSI---HR 591
LGC + KE + VY +L+ + L D++ +R
Sbjct: 76 VLGCCATFKERRNLLRLYFILLLLIFLLEIIAGVLAYVYYQQLSAELKANLKDTLSKRYR 135
Query: 592 YHSDNSTKAAWDSIQTFLQCCGINGTSDWHGR-------------PPTSCPT-------- 708
+A D +Q CCG N + DW P + C T
Sbjct: 136 QPGHEGVTSATDKLQQEFHCCGSNNSQDWRDSEWILSGEAGDRVVPDSCCKTVVAGCGRR 195
Query: 709 --DSQV----KGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTL 837
S + GC + + + + IG + I + +QV GM F L
Sbjct: 196 DHASNIYKVEGGCITRLETFIREHLRIIGAVGIGIACVQVFGMIFTCCL 244
>ref|XP_003357118.1| PREDICTED: tetraspanin-5-like [Sus scrofa].
Length = 268
Score = 74.7 bits (182), Expect = 1e-13
Identities = 55/250 (22%), Positives = 94/250 (37%), Gaps = 47/250 (18%)
Frame = +1
Query: 244 LKYVLFFFNLLFWFCGCCILGFGIYLLIHNDFGVLFHKLPSLTLGN-----VLIIVGSII 408
+KY +F FN++FWF G LG G++ N+ GVL + LG + ++VG ++
Sbjct: 15 IKYFIFGFNVIFWFLGIAFLGIGLW--AWNEKGVLSNISSITDLGGFDPVWLFLVVGGVM 72
Query: 409 MVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLTDSIH 588
++ F GC+G+++EN V++ + + + ++I
Sbjct: 73 FILGFAGCIGALRENTFLLKFFSVFLGIIFFLELTAGVLAFVFKDWIKDQLYFFINNNIR 132
Query: 589 RYHSDNSTKAAWDSIQTFLQCCGINGTSDWH-----------------GRPPTSCPTDS- 714
Y D + D Q + QCCG G DW+ G P + C D
Sbjct: 133 AYRDDIDLQNLIDFTQEYWQCCGAFGADDWNLNIYFNCTDSNASRERCGVPFSCCTKDPA 192
Query: 715 ------------------------QVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMS 822
KGC + + W N + I I + ++Q+ G+
Sbjct: 193 EDVINTQCGYDARQKPEVDQQIVIYTKGCVPQFEKWLQDNLTIVAGIFIGIALLQIFGIC 252
Query: 823 FALTLNCQID 852
A L I+
Sbjct: 253 LAQNLVSDIE 262
>ref|XP_001929074.2| PREDICTED: tetraspanin-3 isoform 1 [Sus scrofa].
Length = 253
Score = 74.7 bits (182), Expect = 1e-13
Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 27/236 (11%)
Frame = +1
Query: 220 MGISSLKLLKYVLFFFNLLFWFCGCCILGFGIYLLI-HNDFGVLFHKLPSLTLGNVLIIV 396
MG + K VL F NL+FW + G Y+ I ++D+ F + +L V+I V
Sbjct: 1 MGQCGITSSKTVLVFLNLIFWGAAGILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAV 60
Query: 397 GSIIMVVAFLGCMGSIKENKCXXXXXXXXXXXXXXXXXXXXXXXXVYEPKLNVYVAEGLT 576
G+++ V+ +GC +I+E++C VY K+ V +
Sbjct: 61 GALLFVIGLIGCCATIRESRCGLATFVIILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQ 120
Query: 577 DSIHRYHSDNSTKA--AWDSIQTFLQCCGINGTSDWHGRP----------PTSC------ 702
Y+ N A A D +Q L CCGI+ SDW P SC
Sbjct: 121 KVYKTYNGTNPDAASRAIDYVQRQLHCCGIHNYSDWENTDWFKETKNQSVPLSCCRETSS 180
Query: 703 --------PTDSQVKGCFVKAKLWFHSNFLYIGIITICVCVIQVLGMSFALTLNCQ 846
P+D +GC +++ + IQ+LGM A + C+
Sbjct: 181 NCNGSLAYPSDLYSEGCEALVVKKLQEIMMHVIWAALAFAAIQLLGMLCACIVLCR 236
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,987,433
Number of extensions: 909209
Number of successful extensions: 2534
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 2491
Number of HSP's successfully gapped: 23
Length of query: 520
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 417
Effective length of database: 8,779,541
Effective search space: 3661068597
Effective search space used: 3661068597
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007365
(1560 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1469 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 1469 bits (741), Expect = 0.0
Identities = 754/757 (99%), Gaps = 1/757 (0%)
Strand = Plus / Minus
Query: 805 caggtgttggggatgtcctttgcactgaccctgaactgccagattgacaaaaccagccag 864
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674960 caggtgttggggatgtcctttgcactgaccctgaactgccagattgacaaaaccagccag 119674901
Query: 865 gtcttaggactgtgacctgctgctaccacatgctggagagacttgtctcatctctggaag 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674900 gtcttaggactgtgacctgctgctaccacatgctggagagacttgtctcatctctggaag 119674841
Query: 925 tctaaagtcacctgtagcgtgaagccctaaatgatcacctcgtgaactggtgtctttgtc 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674840 tctaaagtcacctgtagcgtgaagccctaaatgatcacctcgtgaactggtgtctttgtc 119674781
Query: 985 cccctcctgtttctttcctgtttgggtccctgtcttatccaaccagagaagaagatgctg 1044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674780 cccctcctgtttctttcctgtttgggtccctgtcttatccaaccagagaagaagatgctg 119674721
Query: 1045 gccagggacttgccacctcagacagcaagacaatcctttacccaatcatgacagaagcca 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674720 gccagggacttgccacctcagacagcaagacaatcctttacccaatcatgacagaagcca 119674661
Query: 1105 tatcatttaccaatacctgagcatttgtcagatatgaaaacccaagagaacctgtggtaa 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674660 tatcatttaccaatacctgagcatttgtcagatatgaaaacccaagagaacctgtggtaa 119674601
Query: 1165 taatggctcaagagcaaagcatcagtctgaagcttgagtatttgcatcttcctgttgtca 1224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674600 taatggctcaagagcaaagcatcagtctgaagcttgagtatttgcatcttcctgttgtca 119674541
Query: 1225 aacaagtctctagcctctaaatcatgcccagtccactccagaagtcaagccagagacgag 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674540 aacaagtctctagcctctaaatcatgcccagtccactccagaagtcaagccagagacgag 119674481
Query: 1285 cttaggggaggagctctggggctagattcactggatcattgtctcagtcttctggttcct 1344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674480 cttaggggaggagctctggggctagattcactggatcattgtctcagtcttctggttcct 119674421
Query: 1345 tttgaataggggtcttgtttacaggaatgacagagtactctttctccaaaggtgaggttt 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119674420 tttgaataggggtcttgtttacaggaatgacagagtactctttctccaaaggtgaggttt 119674361
Query: 1405 catttcaatttctttattaaagggtcttatt-attcattctaagtctttccaaaagaaac 1463
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 119674360 catttcaatttctttattaaggggtcttattaattcattctaagtctttccaaaagaaac 119674301
Query: 1464 tatcccttgactcacatcctgatttcagcccatctcttagatttgattttcataactagg 1523
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 119674300 tatcccttgactcacatcctgatttcagcccatctcttagatttgatttccataactagg 119674241
Query: 1524 aaggaattcagcagaatgagtgtctctggtggtttag 1560
|||||||||||||||||||||||||||||||||||||
Sbjct: 119674240 aaggaattcagcagaatgagtgtctctggtggtttag 119674204
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Minus
Query: 1 aggctgaagagggcgggcccaggctcacttcctccctctcctcatctgggcttcctgtcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119703427 aggctgaagagggcgggcccaggctcacttcctccctctcctcatctgggcttcctgtcg 119703368
Query: 61 tcacagtgtgatcacatttattcccccttaacttctccttttacacaaatagccccgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119703367 tcacagtgtgatcacatttattcccccttaacttctccttttacacaaatagccccgaca 119703308
Query: 121 tccgcattaccagctttgtctcagggccgcattgataatcattaattctgcctaaaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119703307 tccgcattaccagctttgtctcagggccgcattgataatcattaattctgcctaaaggac 119703248
Query: 181 cgaggaaaagtgcctgcaaaagg 203
|||||||||||||||||||||||
Sbjct: 119703247 cgaggaaaagtgcctgcaaaagg 119703225
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Minus
Query: 282 gttctgtggctgttgcattttgggctttgggatctacctcctgatccacaacgactttgg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119686923 gttctgtggctgttgcattttgggctttgggatctacctcctgatccacaacgactttgg 119686864
Query: 342 agtgctcttccataagctcccctctctcacgctgggcaatgtgcttatcattgtcggctc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119686863 agtgctcttccataagctcccctctctcacgctgggcaatgtgcttatcattgtcggctc 119686804
Query: 402 cattatcatggtagttgccttcctgggctgcatgggatccatcaaggagaacaagtgcct 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119686803 cattatcatggtagttgccttcctgggctgcatgggatccatcaaggagaacaagtgcct 119686744
Query: 462 gctgatgtcg 471
||||||||||
Sbjct: 119686743 gctgatgtcg 119686734
Score = 194 bits (98), Expect = 1e-46
Identities = 98/98 (100%)
Strand = Plus / Minus
Query: 545 agctgaatgtctatgtggctgagggcctgaccgacagcatccatcgatatcactcagaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119684589 agctgaatgtctatgtggctgagggcctgaccgacagcatccatcgatatcactcagaca 119684530
Query: 605 acagcaccaaggcagcatgggactccatccagacgttt 642
||||||||||||||||||||||||||||||||||||||
Sbjct: 119684529 acagcaccaaggcagcatgggactccatccagacgttt 119684492
Score = 174 bits (88), Expect = 9e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 722 agggttgctttgtaaaagcaaagctgtggtttcactccaatttcctgtatatcggaatca 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119676375 agggttgctttgtaaaagcaaagctgtggtttcactccaatttcctgtatatcggaatca 119676316
Query: 782 tcactatctgcgtgtgtgtgatccaggt 809
||||||||||||||||||||||||||||
Sbjct: 119676315 tcactatctgcgtgtgtgtgatccaggt 119676288
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 643 cttcaatgctgtggtataaatggcacgagtgattggcacggcagaccaccaacatcttgt 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119677462 cttcaatgctgtggtataaatggcacgagtgattggcacggcagaccaccaacatcttgt 119677403
Query: 703 cccacagactcacaagttaagg 724
||||||||||||||||||||||
Sbjct: 119677402 cccacagactcacaagttaagg 119677381
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 201 agggcaagaatatctcagcatgggcataagtagcttgaaattgctgaagtatgtcctgtt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119687958 agggcaagaatatctcagcatgggcataagtagcttgaaattgctgaagtatgtcctgtt 119687899
Query: 261 tttcttcaacttgctcttttgg 282
||||||||||||||||||||||
Sbjct: 119687898 tttcttcaacttgctcttttgg 119687877
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 471 gttctttgtcttgctgctgattattctccttgcggaggtgaccttagccatcctgctctt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119685187 gttctttgtcttgctgctgattattctccttgcggaggtgaccttagccatcctgctctt 119685128
Query: 531 cgtgtatgaacctaag 546
||||||||||||||||
Sbjct: 119685127 cgtgtatgaacctaag 119685112
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 51,431,573
Number of extensions: 298
Number of successful extensions: 298
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 8
Length of query: 1560
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1539
Effective length of database: 2,808,413,156
Effective search space: 4322147847084
Effective search space used: 4322147847084
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)