Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007372
(1441 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070018.1| complement C1s subcomponent [Bos taurus]. 634 0.0
Alignment gi|NP_001179001.1| mannan-binding lectin serine protease 2 [Bos... 230 3e-60
Alignment gi|NP_001070436.1| mannan-binding lectin serine protease 1 [Bos... 226 3e-59
Alignment gi|NP_001179084.1| complement C1r subcomponent-like protein [Bo... 172 7e-43
Alignment gi|NP_001035560.1| haptoglobin precursor [Bos taurus]. 171 1e-42
Alignment gi|XP_002687921.1| PREDICTED: complement component 1, r subcomp... 171 1e-42
Alignment gi|NP_001098924.1| chymotrypsinogen B [Bos taurus]. 149 6e-36
Alignment gi|NP_001098800.1| chymotrypsinogen B [Bos taurus]. 122 6e-28
Alignment gi|NP_777139.1| chymotrypsin-like elastase family member 2A pre... 119 5e-27
Alignment gi|XP_002688359.1| PREDICTED: transmembrane protease, serine 11... 118 1e-26
>ref|NP_001070018.1| complement C1s subcomponent [Bos taurus].
Length = 695
Score = 634 bits (1635), Expect = 0.0
Identities = 301/376 (80%), Positives = 328/376 (87%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
+DVVKITC+DGFEVVQG+VGS SFYSTCQSNGKWSNSKLRCQPVDCG+PEPI HG+VEDP
Sbjct: 320 RDVVKITCVDGFEVVQGSVGSPSFYSTCQSNGKWSNSKLRCQPVDCGAPEPIQHGRVEDP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
E TLFGS+TRYSCE PYY ME +GSE Y C+GNGSWVN++LG E PKC+ VCG PSEPF+
Sbjct: 380 ESTLFGSITRYSCEMPYYSMECEGSEVYHCSGNGSWVNKVLGIEPPKCIAVCGTPSEPFR 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
QRIFGG I KIE+FPWQVFF NP AGGALIDE WVLTAAHVVEGN PVMYVGSSSVV
Sbjct: 440 STQRIFGGSIAKIENFPWQVFFSNPWAGGALIDEYWVLTAAHVVEGNDIPVMYVGSSSVV 499
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDAS-ERKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
TS L+N QMLTAERVFIHPGWE D S RKNFDNDIALVRL+DPVKMGP V+PICLPGT
Sbjct: 500 TSQLSNAQMLTAERVFIHPGWEVLDPSITRKNFDNDIALVRLRDPVKMGPKVAPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+YDP LGLISGWGRTN K HV+KLRGAKLPVAP KC+E+KG NP I SSFVFT
Sbjct: 560 SSEYDPPENVLGLISGWGRTNVKSHVIKLRGAKLPVAPLSKCREMKGVNPGIDISSFVFT 619
Query: 900 DNMICAGG-RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYI 1076
+NMICAG +GVDSC+GDSGGAFA+Q P E PKFYVAGLVSWGPQCGTYGIYTRVKNY+
Sbjct: 620 ENMICAGNDKGVDSCDGDSGGAFAVQDPKENKPKFYVAGLVSWGPQCGTYGIYTRVKNYV 679
Query: 1077 DWIRETMQQNSAPSVD 1124
DWIR+TMQ+ SAPSVD
Sbjct: 680 DWIRKTMQEYSAPSVD 695
>ref|NP_001179001.1| mannan-binding lectin serine protease 2 [Bos taurus].
Length = 686
Score = 230 bits (586), Expect = 3e-60
Identities = 139/379 (36%), Positives = 189/379 (49%), Gaps = 11/379 (2%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVE-- 176
KD + C G+E++QG + SF + CQ +G W C VDCG P+ +P G+VE
Sbjct: 321 KDHFSVFCETGYELLQGNLPLKSFAAVCQKDGSWDRPMPVCSIVDCGPPDDLPSGQVEYI 380
Query: 177 -DPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
P T + +V +Y C + Y DG +Y C +G W + LP C PVCGI +
Sbjct: 381 TGPAVTTYRAVVKYRCNEFYTMTTNDG--KYVCEADGFWTSSKREKSLPVCEPVCGISTR 438
Query: 354 PFKGMQRIFGGIITKIESFPWQV-FFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGS 530
+G RI+GG K+ FPWQV A GAL+ + W+LTAAH V RE +
Sbjct: 439 TTEG--RIYGGQNAKLGYFPWQVLLLGKTMAAGALLYDNWILTAAHAVYDQREDTASLQI 496
Query: 531 SSVVTSHLA-NGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPIC 707
++ N AE +FIH + +DNDIAL++LK+ V + + PIC
Sbjct: 497 RMGALKRISPNYTQAWAEAIFIHESYIHD-----AGYDNDIALIKLKNKVAINSNIMPIC 551
Query: 708 LPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSS 887
LP ++ D+G SGWG T L+ +PV KC A +
Sbjct: 552 LPRKEAESFMRTNDIGTASGWGLTQRGFLARNLKFIDIPVVDHQKC---TAAYEKKSYPE 608
Query: 888 FVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP-QCG---TYG 1049
TDNM+CAG G DSC GDSGGA + ET K++V G+VSWG CG YG
Sbjct: 609 GRVTDNMLCAGLQSGGKDSCRGDSGGALVFL--DNETQKWFVGGIVSWGSINCGEADQYG 666
Query: 1050 IYTRVKNYIDWIRETMQQN 1106
+YT+V NYI WI+ + N
Sbjct: 667 VYTKVINYIPWIKSIINSN 685
>ref|NP_001070436.1| mannan-binding lectin serine protease 1 [Bos taurus].
Length = 728
Score = 226 bits (577), Expect = 3e-59
Identities = 144/407 (35%), Positives = 214/407 (52%), Gaps = 42/407 (10%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V I C G++V++ V +F C +G WS+ C+ DCG+P + +G V
Sbjct: 322 KDQVLIGCDTGYKVLKDNVEMDTFQMECLKDGTWSSKIPTCKIADCGAPAELENGVVTFS 381
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S RYSC++PYY M + + Y C+ G W+NE+LG P C+PVCG PS
Sbjct: 382 TRNNLTTYKSEIRYSCQRPYYKMLHNTTGVYTCSAQGVWMNEVLGRSQPTCLPVCGQPSR 441
Query: 354 PFKGM-QRIFGGIITKIESFPWQVFF--------QNPR--AGGALIDEQWVLTAAHVVEG 500
+ +RI GG + FPWQ N + GAL+ E W+LTAAHV+
Sbjct: 442 SLPNLVKRIIGGRNAEPGLFPWQALIVVEDTSRVPNDKWFGSGALLSESWILTAAHVLRS 501
Query: 501 -NREPVMYVGSSSVVTSHL--------ANGQMLTAERVFIHPGWEEQDASERKNFDNDIA 653
R+ + S VT HL + +A RV +HP + Q ++++DIA
Sbjct: 502 QRRDNTVTPVSKEHVTVHLGLHDVRDKSGAVNSSAARVVLHPDFNIQ------SYNHDIA 555
Query: 654 LVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTN---TKDHVV-------- 800
LV+L++PV +GP + P+CLP P+ LGL++GWG +N T D ++
Sbjct: 556 LVQLREPVPLGPHILPVCLP-PPEPAGPAPHVLGLVAGWGISNPNVTVDEIIGSGTRTLS 614
Query: 801 -KLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAFAM 971
L+ KLPV P +C+ + + ++ T+NM CAG G D+C GDSGGAF
Sbjct: 615 DVLQYVKLPVVPHAECK----TSYESRSGNYSVTENMFCAGYYEGGKDTCLGDSGGAFV- 669
Query: 972 QVPNEETPKFYVAGLVSWG--PQCGT---YGIYTRVKNYIDWIRETM 1097
+ ++ + ++ GLVSWG +CG+ YG+YT+V NY+DW+ E M
Sbjct: 670 -ILDDASQRWVAQGLVSWGGPEECGSKQVYGVYTKVSNYVDWVWEQM 715
>ref|NP_001179084.1| complement C1r subcomponent-like protein [Bos taurus].
Length = 514
Score = 172 bits (436), Expect = 7e-43
Identities = 113/309 (36%), Positives = 153/309 (49%), Gaps = 10/309 (3%)
Frame = +3
Query: 219 CEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITK 398
C++PYY + G+ C W E P+CVPVCG P P + G +
Sbjct: 200 CQEPYYEAKPSGT--LTCTAQVPWKQTQKREEAPRCVPVCGRPVVPISQTRESLGASRAE 257
Query: 399 IESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVVEGNREPVMYVG-SSSVVTSHLANGQML 572
+ SFPWQ R GGAL+ ++WVLTAAH + ++ S+ V H QML
Sbjct: 258 LGSFPWQALTSIYGRGGGALLGDRWVLTAAHTIYPKDSILLGRNRSAQVFLGHTDTDQML 317
Query: 573 -----TAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDP 737
RV +HP + ++ E +F DIAL+ L+ V +GP + P+CLP + Y P
Sbjct: 318 ELGRHPVRRVVVHPDYHQE---EPHDFHGDIALLELERSVPLGPHLLPVCLPDREALYRP 374
Query: 738 SVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICA 917
G G +SG+G KL+ ++LPVAP C+ A R FTD M CA
Sbjct: 375 --GRWGYVSGFG-VEMDWLSTKLKYSRLPVAPRAACE----AWLRERQRPEAFTDGMFCA 427
Query: 918 GG--RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGT-YGIYTRVKNYIDWIR 1088
G R C GDSGGAF V ++ T ++ G+VSWG CG YG YT+V +Y+DWIR
Sbjct: 428 GDQTRPQSVCQGDSGGAFV--VWDDRTQRWVATGIVSWGIGCGEGYGFYTKVLDYVDWIR 485
Query: 1089 ETMQQNSAP 1115
M P
Sbjct: 486 GVMGGKDRP 494
>ref|NP_001035560.1| haptoglobin precursor [Bos taurus].
Length = 401
Score = 171 bits (434), Expect = 1e-42
Identities = 116/362 (32%), Positives = 174/362 (48%), Gaps = 23/362 (6%)
Frame = +3
Query: 90 SNGKWSNSKL-----RCQPVD-CGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETD 251
+N +W N + C+ D C P I +G VE + RY C+ PYY + T
Sbjct: 65 NNKQWINKDIGQQLPECEEDDSCPEPPKIENGYVE--------YLVRYQCK-PYYTLRTC 115
Query: 252 GSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---V 422
G Y W+N+ +G +LP+C VCG P P +QRI GG + SFPWQ V
Sbjct: 116 GDGVYTFNSKKQWINKNIGQKLPECEAVCGKPKHPVDQVQRIIGGSLDAKGSFPWQAKMV 175
Query: 423 FFQNPRAGGALIDEQWVLTAA-HVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHP 599
N +G LI+E+W+LT A ++ G+ + + ++ Q++ E+V +HP
Sbjct: 176 SQHNLISGATLINERWLLTTAKNLYLGHSSDKKAKDITPTLRLYVGKNQLVEVEKVVLHP 235
Query: 600 GWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRT 779
+ DI L++L+ V + V PICLP S DY VG +G +SGWGR
Sbjct: 236 DHSKV----------DIGLIKLRQKVPVNDKVMPICLP--SKDY-VKVGRVGYVSGWGRN 282
Query: 780 NTKDHVVKLRGAKLPVAPSDKC---------QEIKGANPRIGTSSFVFTDNMICAGGRGV 932
+ L+ LPVA DKC + K A +G + +N C G
Sbjct: 283 ENFNFTEHLKYVMLPVADQDKCVKHYEGVDAPKNKTAKSPVGVQP-ILNENTFCVGLSKY 341
Query: 933 --DSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGT--YGIYTRVKNYIDWIRETMQ 1100
D+C GD+G AF V ++E +Y AG++S+ C YG+Y +V + +DW+R+T+
Sbjct: 342 QDDTCYGDAGSAFV--VHDKEDDTWYAAGILSFDKSCAVAEYGVYVKVTSILDWVRKTIA 399
Query: 1101 QN 1106
N
Sbjct: 400 NN 401
>ref|XP_002687921.1| PREDICTED: complement component 1, r subcomponent-like [Bos taurus].
Length = 492
Score = 171 bits (434), Expect = 1e-42
Identities = 112/303 (36%), Positives = 152/303 (50%), Gaps = 10/303 (3%)
Frame = +3
Query: 219 CEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITK 398
C++PYY + G+ C W E P+CVPVCG P P + G +
Sbjct: 200 CQEPYYEAKPSGT--LTCTAQVPWKQTQKREEAPRCVPVCGRPVVPISQTRESLGASRAE 257
Query: 399 IESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVVEGNREPVMYVG-SSSVVTSHLANGQML 572
+ SFPWQ R GGAL+ ++WVLTAAH + ++ S+ V H QML
Sbjct: 258 LGSFPWQALTSIYGRGGGALLGDRWVLTAAHTIYPKDSILLGRNRSAQVFLGHTDTDQML 317
Query: 573 -----TAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDP 737
RV +HP + ++ E +F DIAL+ L+ V +GP + P+CLP + Y P
Sbjct: 318 ELGRHPVRRVVVHPDYHQE---EPHDFHGDIALLELERSVPLGPHLLPVCLPDREALYRP 374
Query: 738 SVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICA 917
G G +SG+G KL+ ++LPVAP C+ A R FTD M CA
Sbjct: 375 --GRWGYVSGFG-VEMDWLSTKLKYSRLPVAPRAACE----AWLRERQRPEAFTDGMFCA 427
Query: 918 GG--RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGT-YGIYTRVKNYIDWIR 1088
G R C GDSGGAF V ++ T ++ G+VSWG CG YG YT+V +Y+DWIR
Sbjct: 428 GDQTRPQSVCQGDSGGAFV--VWDDRTQRWVATGIVSWGIGCGEGYGFYTKVLDYVDWIR 485
Query: 1089 ETM 1097
M
Sbjct: 486 GVM 488
>ref|NP_001098924.1| chymotrypsinogen B [Bos taurus].
Length = 263
Score = 149 bits (376), Expect = 6e-36
Identities = 100/268 (37%), Positives = 137/268 (51%), Gaps = 11/268 (4%)
Frame = +3
Query: 336 CGIPS-EP-FKGMQRIFGGIITKIESFPWQVFFQNPRA----GGALIDEQWVLTAAHVVE 497
CG+P+ +P G+ RI G S+PWQV Q GG+LI E WV+TAAH
Sbjct: 19 CGVPAIDPVLSGLSRIVNGEDAVPGSWPWQVSLQTSSGFHFCGGSLISEDWVVTAAHC-- 76
Query: 498 GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPV 677
G R+ + V S S GQ+L VF HP W+ + ND+AL++L P
Sbjct: 77 GVRKGHLVVAGVSDQGSEEEAGQVLRVAEVFEHPQWDLRAVR------NDVALLKLAAPA 130
Query: 678 KMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRT--NTKDHVVKLRGAKLPVAPSDKCQE 851
++ V+P+CLP S+D G L ++GWG+T N D KL+ A LP+ + C+E
Sbjct: 131 RLSAAVAPVCLP--SADTSFPTGSLCTVTGWGKTRYNAFDTPDKLQQATLPILSNADCRE 188
Query: 852 IKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWG- 1028
G+ TD MICAG G+ SC GDSGG Q T +AG+VSWG
Sbjct: 189 FWGSK---------ITDVMICAGASGISSCMGDSGGPLVCQKDGAWT----LAGIVSWGS 235
Query: 1029 PQCGTY--GIYTRVKNYIDWIRETMQQN 1106
+C + G+Y RV +I WI E ++ N
Sbjct: 236 SRCSPFLPGVYARVTKFIPWILEVLEAN 263
>ref|NP_001098800.1| chymotrypsinogen B [Bos taurus].
Length = 263
Score = 122 bits (307), Expect = 6e-28
Identities = 92/268 (34%), Positives = 128/268 (47%), Gaps = 11/268 (4%)
Frame = +3
Query: 336 CGIPS-EP-FKGMQRIFGGIITKIESFPWQVFFQNPRA----GGALIDEQWVLTAAHVVE 497
CG+P+ +P G+ RI G S+PWQV Q+ GG+LI E WV+TAAH
Sbjct: 19 CGVPAIQPVLSGLARIVNGEDAVPGSWPWQVSLQDSTGFHFCGGSLISEDWVVTAAHC-- 76
Query: 498 GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPV 677
G + V + Q+L +VF +P + NDI L++L P
Sbjct: 77 GVTTSDVVVAGEFDQGLQTEDTQVLKIGKVFKNPKFSILTVR------NDITLLKLATPA 130
Query: 678 KMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRT--NTKDHVVKLRGAKLPVAPSDKCQE 851
+ TVS +CLP S+D D G L +GWG+T N KL+ A LP+ + C++
Sbjct: 131 QFSETVSAVCLP--SADEDFPAGMLCATTGWGKTKYNALKTPDKLQQATLPIVSNTDCRK 188
Query: 852 IKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP 1031
G+ TD MICAG GV SC GDSGG Q + + +AG+VSWG
Sbjct: 189 YWGSR---------VTDVMICAGASGVSSCMGDSGGPLVCQ----KNGAWTLAGIVSWGS 235
Query: 1032 ---QCGTYGIYTRVKNYIDWIRETMQQN 1106
T +Y RV + W++ET+ N
Sbjct: 236 STCSTSTPAVYARVTALMPWVQETLAAN 263
>ref|NP_777139.1| chymotrypsin-like elastase family member 2A precursor [Bos taurus].
Length = 269
Score = 119 bits (299), Expect = 5e-27
Identities = 89/271 (32%), Positives = 131/271 (48%), Gaps = 14/271 (5%)
Frame = +3
Query: 336 CGIPSEPFKGMQRIFGGIITKIESFPWQVFFQNPRAG-------GALIDEQWVLTAAHVV 494
CG+P+ P + + R+ GG + S+PWQV Q +G G+LI++ WVLTAAH +
Sbjct: 17 CGVPTYPPQ-LSRVVGGEDARPNSWPWQVSLQYSSSGQWRHTCGGSLIEQNWVLTAAHCI 75
Query: 495 EGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDP 674
+R + VG S+ T + + + IH W ++ NDIAL++L
Sbjct: 76 SSSRTYRVVVGRQSLSTVE-SGSLTIAVSKSVIHEKWNSNQLAQ----GNDIALLKLASS 130
Query: 675 VKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVK-LRGAKLPVAPSDKCQE 851
V + + CLP + + + ++GWGR + + L+ KL V C
Sbjct: 131 VPLTDKIQLGCLPAAGTILPNNY--VCYVTGWGRLQSNGALPDILQQGKLLVVDYATC-- 186
Query: 852 IKGANPRIGTSSFVFTDNMICAGGRGV-DSCNGDSGGAFAMQVPNEETPKFYVAGLVSWG 1028
+NP S+ NMICAGG GV SCNGDSGG Q N + + V G+VS+G
Sbjct: 187 ---SNPSWWGST--VKTNMICAGGDGVTSSCNGDSGGPLNCQAANRQ---WQVHGIVSFG 238
Query: 1029 PQ--CGTY---GIYTRVKNYIDWIRETMQQN 1106
C Y ++TRV NY DWI ++ N
Sbjct: 239 SSLGCNYYRKPSVFTRVSNYNDWISSVIENN 269
>ref|XP_002688359.1| PREDICTED: transmembrane protease, serine 11D-like [Bos taurus].
Length = 417
Score = 118 bits (296), Expect = 1e-26
Identities = 80/262 (30%), Positives = 125/262 (47%), Gaps = 10/262 (3%)
Frame = +3
Query: 336 CGIPSEPFK-GMQRIFGGIITKIESFPWQVFFQ---NPRAGGALIDEQWVLTAAHVVEGN 503
CG+ S+ +RI GG + +PWQV Q + R GGALI +W+L+AAH +
Sbjct: 172 CGVRSDLITLSEERIIGGSKAEKGDWPWQVSLQWSSSHRCGGALISNRWILSAAHCFRSH 231
Query: 504 REPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKM 683
+P ++ + TS ++ + + IH ++ + +NDIALV+L V
Sbjct: 232 SDPRQWIATFG--TSTISPQLRVGVRNILIHDNYKPE------THENDIALVQLDREVTF 283
Query: 684 GPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVK-LRGAKLPVAPSDKCQEIKG 860
+ +CLP ++ S G ++GWG + + V L ++ + + C G
Sbjct: 284 NRYIHTVCLP--EANQAISAGSTAYVTGWGSQSYSGNTVSDLNQGRVNIISNTVCNTPAG 341
Query: 861 ANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQ 1034
N + M+CAG GVD+C GDSGG V + +++ G+VSWG Q
Sbjct: 342 YNGAV-------LSGMLCAGLPEGGVDACQGDSGGPL---VQEDSRQHWFIVGIVSWGYQ 391
Query: 1035 CG---TYGIYTRVKNYIDWIRE 1091
CG G+YTRV Y DWI +
Sbjct: 392 CGLPDKPGVYTRVTAYRDWITQ 413
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 60,915,743
Number of extensions: 1761845
Number of successful extensions: 6413
Number of sequences better than 1.0e-05: 185
Number of HSP's gapped: 5788
Number of HSP's successfully gapped: 235
Length of query: 480
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,174,046
Effective search space: 5301093204
Effective search space used: 5301093204
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007372
(1441 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_867216.1| PREDICTED: similar to Complement C1s subcompone... 629 e-180
Alignment gi|XP_543841.2| PREDICTED: similar to Complement C1s subcompone... 629 e-180
Alignment gi|XP_853320.1| PREDICTED: similar to Complement C1s subcompone... 629 e-180
Alignment gi|XP_867183.1| PREDICTED: similar to Complement C1r subcompone... 235 7e-62
Alignment gi|XP_534901.2| PREDICTED: similar to Complement C1r subcompone... 235 7e-62
Alignment gi|XP_850273.1| PREDICTED: similar to mannan-binding lectin ser... 231 2e-60
Alignment gi|XP_545245.2| PREDICTED: similar to mannan-binding lectin ser... 231 2e-60
Alignment gi|XP_861032.1| PREDICTED: similar to mannan-binding lectin ser... 204 2e-52
Alignment gi|XP_536799.2| PREDICTED: similar to Haptoglobin precursor iso... 174 2e-43
Alignment gi|XP_850996.1| PREDICTED: similar to Haptoglobin precursor iso... 174 2e-43
>ref|XP_867216.1| PREDICTED: similar to Complement C1s subcomponent precursor (C1
esterase) isoform 3 [Canis familiaris].
Length = 695
Score = 629 bits (1621), Expect = e-180
Identities = 291/376 (77%), Positives = 332/376 (88%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITCL+GFEVVQG+VGS+SFYSTCQSNGKWSNSKL+CQPVDCGSPEPI +GK EDP
Sbjct: 320 KDVVKITCLEGFEVVQGSVGSSSFYSTCQSNGKWSNSKLKCQPVDCGSPEPIQNGKAEDP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
EHTLFGSV Y+CE+PYYY+E + S EY CAGNGSWVN+LLG ELPKCVPVCG+PS+PF
Sbjct: 380 EHTLFGSVIHYTCEEPYYYLEDEESGEYHCAGNGSWVNKLLGTELPKCVPVCGVPSKPFM 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
G QRIFGG + +I++FPWQVFF NPRAGGALIDE WVLTAAHVVE NREPVMYVGS+SVV
Sbjct: 440 GKQRIFGGSLAEIQNFPWQVFFSNPRAGGALIDEYWVLTAAHVVERNREPVMYVGSTSVV 499
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDASE-RKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
TS L QMLTAERV IHP WE D E RKNF+NDIALV+LK+PVKMGP VSPICLPGT
Sbjct: 500 TSELTKAQMLTAERVIIHPDWEFLDDPETRKNFNNDIALVQLKEPVKMGPNVSPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+YDP +G LGLISGWGRT +DHV+ LRGA LP+ P +KC+E+KG N ++ +++VFT
Sbjct: 560 SSEYDPPMGALGLISGWGRTKARDHVIMLRGASLPIVPLEKCREVKGKNVKVDINTYVFT 619
Query: 900 DNMICAGG-RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYI 1076
+NMICAGG +GVDSC GDSGGAFA++VPNEET KFYVAGLVSWGPQCGTYGIYTRVKNYI
Sbjct: 620 NNMICAGGEKGVDSCEGDSGGAFALRVPNEETLKFYVAGLVSWGPQCGTYGIYTRVKNYI 679
Query: 1077 DWIRETMQQNSAPSVD 1124
DWIR+TMQ++S PS+D
Sbjct: 680 DWIRQTMQEHSTPSMD 695
>ref|XP_543841.2| PREDICTED: similar to Complement C1s subcomponent precursor (C1
esterase) isoform 1 [Canis familiaris].
Length = 695
Score = 629 bits (1621), Expect = e-180
Identities = 291/376 (77%), Positives = 332/376 (88%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITCL+GFEVVQG+VGS+SFYSTCQSNGKWSNSKL+CQPVDCGSPEPI +GK EDP
Sbjct: 320 KDVVKITCLEGFEVVQGSVGSSSFYSTCQSNGKWSNSKLKCQPVDCGSPEPIQNGKAEDP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
EHTLFGSV Y+CE+PYYY+E + S EY CAGNGSWVN+LLG ELPKCVPVCG+PS+PF
Sbjct: 380 EHTLFGSVIHYTCEEPYYYLEDEESGEYHCAGNGSWVNKLLGTELPKCVPVCGVPSKPFM 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
G QRIFGG + +I++FPWQVFF NPRAGGALIDE WVLTAAHVVE NREPVMYVGS+SVV
Sbjct: 440 GKQRIFGGSLAEIQNFPWQVFFSNPRAGGALIDEYWVLTAAHVVERNREPVMYVGSTSVV 499
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDASE-RKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
TS L QMLTAERV IHP WE D E RKNF+NDIALV+LK+PVKMGP VSPICLPGT
Sbjct: 500 TSELTKAQMLTAERVIIHPDWEFLDDPETRKNFNNDIALVQLKEPVKMGPNVSPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+YDP +G LGLISGWGRT +DHV+ LRGA LP+ P +KC+E+KG N ++ +++VFT
Sbjct: 560 SSEYDPPMGALGLISGWGRTKARDHVIMLRGASLPIVPLEKCREVKGKNVKVDINTYVFT 619
Query: 900 DNMICAGG-RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYI 1076
+NMICAGG +GVDSC GDSGGAFA++VPNEET KFYVAGLVSWGPQCGTYGIYTRVKNYI
Sbjct: 620 NNMICAGGEKGVDSCEGDSGGAFALRVPNEETLKFYVAGLVSWGPQCGTYGIYTRVKNYI 679
Query: 1077 DWIRETMQQNSAPSVD 1124
DWIR+TMQ++S PS+D
Sbjct: 680 DWIRQTMQEHSTPSMD 695
>ref|XP_853320.1| PREDICTED: similar to Complement C1s subcomponent precursor (C1
esterase) isoform 2 [Canis familiaris].
Length = 695
Score = 629 bits (1621), Expect = e-180
Identities = 291/376 (77%), Positives = 332/376 (88%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITCL+GFEVVQG+VGS+SFYSTCQSNGKWSNSKL+CQPVDCGSPEPI +GK EDP
Sbjct: 320 KDVVKITCLEGFEVVQGSVGSSSFYSTCQSNGKWSNSKLKCQPVDCGSPEPIQNGKAEDP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
EHTLFGSV Y+CE+PYYY+E + S EY CAGNGSWVN+LLG ELPKCVPVCG+PS+PF
Sbjct: 380 EHTLFGSVIHYTCEEPYYYLEDEESGEYHCAGNGSWVNKLLGTELPKCVPVCGVPSKPFM 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
G QRIFGG + +I++FPWQVFF NPRAGGALIDE WVLTAAHVVE NREPVMYVGS+SVV
Sbjct: 440 GKQRIFGGSLAEIQNFPWQVFFSNPRAGGALIDEYWVLTAAHVVERNREPVMYVGSTSVV 499
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDASE-RKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
TS L QMLTAERV IHP WE D E RKNF+NDIALV+LK+PVKMGP VSPICLPGT
Sbjct: 500 TSELTKAQMLTAERVIIHPDWEFLDDPETRKNFNNDIALVQLKEPVKMGPNVSPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+YDP +G LGLISGWGRT +DHV+ LRGA LP+ P +KC+E+KG N ++ +++VFT
Sbjct: 560 SSEYDPPMGALGLISGWGRTKARDHVIMLRGASLPIVPLEKCREVKGKNVKVDINTYVFT 619
Query: 900 DNMICAGG-RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYI 1076
+NMICAGG +GVDSC GDSGGAFA++VPNEET KFYVAGLVSWGPQCGTYGIYTRVKNYI
Sbjct: 620 NNMICAGGEKGVDSCEGDSGGAFALRVPNEETLKFYVAGLVSWGPQCGTYGIYTRVKNYI 679
Query: 1077 DWIRETMQQNSAPSVD 1124
DWIR+TMQ++S PS+D
Sbjct: 680 DWIRQTMQEHSTPSMD 695
>ref|XP_867183.1| PREDICTED: similar to Complement C1r subcomponent precursor
(Complement component 1, r subcomponent) isoform 2 [Canis
familiaris].
Length = 628
Score = 235 bits (600), Expect = 7e-62
Identities = 141/387 (36%), Positives = 206/387 (53%), Gaps = 21/387 (5%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
+D TC G+++V+G SF + CQ +G W + RC+ DCG P + +G
Sbjct: 254 RDYFIATCQQGYQLVEGNQVLLSFTAVCQDDGTWHRAMPRCRIKDCGPPRSLTNGAFNYT 313
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEE------YRCAGNGSWVNELLGAELPKCVPV 335
+ + +Y C++PYY M T G Y C G W NE G ++P+C+PV
Sbjct: 314 TTKGVNTYQARIQYYCQEPYYKMHTRGGISEIQRGAYTCTAQGIWKNEWEGEKIPRCLPV 373
Query: 336 CGIPSEPFKGMQRIFGGIITKIESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVV------ 494
CG P P + QRI GG K+ +FPWQ F R GGAL+ ++W+LTAAH +
Sbjct: 374 CGKPVNPVEQKQRIIGGQKAKLGNFPWQAFTNIYGRGGGALLGDRWILTAAHTLYPKDHD 433
Query: 495 -EGNREPVMYVGSSSV-VTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLK 668
+ N +++G SV + LAN + RV IHP + + E NF+ DIAL+ L+
Sbjct: 434 AQSNATVDVFLGHVSVEEITKLANHPV---RRVSIHPDYRQ---DESHNFEGDIALLELE 487
Query: 669 DPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQ 848
+ V +GP + PICLP + YD G +G +SG+G + L+ +LPVA + C+
Sbjct: 488 NSVTLGPNLLPICLPDNETFYDR--GLMGYVSGFGIMEER-LSYDLKFIRLPVAKREACE 544
Query: 849 EIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKFYVAGLVS 1022
N R VF+ NM CAG + D+C GDSGG FA V +E + ++ G+VS
Sbjct: 545 SWLRKNKR----KDVFSQNMFCAGDPSLKQDACQGDSGGVFA--VKDENSDRWVATGIVS 598
Query: 1023 WGPQCGT-YGIYTRVKNYIDWIRETMQ 1100
WG C YG YT++ NY+DWI++ M+
Sbjct: 599 WGIGCSRGYGFYTKLLNYVDWIKKEME 625
>ref|XP_534901.2| PREDICTED: similar to Complement C1r subcomponent precursor
(Complement component 1, r subcomponent) isoform 1 [Canis
familiaris].
Length = 705
Score = 235 bits (600), Expect = 7e-62
Identities = 141/387 (36%), Positives = 206/387 (53%), Gaps = 21/387 (5%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
+D TC G+++V+G SF + CQ +G W + RC+ DCG P + +G
Sbjct: 331 RDYFIATCQQGYQLVEGNQVLLSFTAVCQDDGTWHRAMPRCRIKDCGPPRSLTNGAFNYT 390
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEE------YRCAGNGSWVNELLGAELPKCVPV 335
+ + +Y C++PYY M T G Y C G W NE G ++P+C+PV
Sbjct: 391 TTKGVNTYQARIQYYCQEPYYKMHTRGGISEIQRGAYTCTAQGIWKNEWEGEKIPRCLPV 450
Query: 336 CGIPSEPFKGMQRIFGGIITKIESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVV------ 494
CG P P + QRI GG K+ +FPWQ F R GGAL+ ++W+LTAAH +
Sbjct: 451 CGKPVNPVEQKQRIIGGQKAKLGNFPWQAFTNIYGRGGGALLGDRWILTAAHTLYPKDHD 510
Query: 495 -EGNREPVMYVGSSSV-VTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLK 668
+ N +++G SV + LAN + RV IHP + + E NF+ DIAL+ L+
Sbjct: 511 AQSNATVDVFLGHVSVEEITKLANHPV---RRVSIHPDYRQ---DESHNFEGDIALLELE 564
Query: 669 DPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQ 848
+ V +GP + PICLP + YD G +G +SG+G + L+ +LPVA + C+
Sbjct: 565 NSVTLGPNLLPICLPDNETFYDR--GLMGYVSGFGIMEER-LSYDLKFIRLPVAKREACE 621
Query: 849 EIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKFYVAGLVS 1022
N R VF+ NM CAG + D+C GDSGG FA V +E + ++ G+VS
Sbjct: 622 SWLRKNKR----KDVFSQNMFCAGDPSLKQDACQGDSGGVFA--VKDENSDRWVATGIVS 675
Query: 1023 WGPQCGT-YGIYTRVKNYIDWIRETMQ 1100
WG C YG YT++ NY+DWI++ M+
Sbjct: 676 WGIGCSRGYGFYTKLLNYVDWIKKEME 702
>ref|XP_850273.1| PREDICTED: similar to mannan-binding lectin serine protease 1 isoform
2 precursor isoform 2 [Canis familiaris].
Length = 728
Score = 231 bits (588), Expect = 2e-60
Identities = 148/409 (36%), Positives = 215/409 (52%), Gaps = 44/409 (10%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V I+C G++V++ V +F C +G WSN C+ DCG+P + HG +
Sbjct: 322 KDQVLISCDTGYKVLKDNVEMDTFQIECLKDGTWSNRIPTCKIADCGAPAELKHGLITFS 381
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S +YSC+QPYY M + + Y C+ G W+NE+LG P C+PVCG PS
Sbjct: 382 TRNNLTTYKSEIQYSCQQPYYKMLHNITGVYTCSAQGVWMNEVLGRSQPTCLPVCGQPSR 441
Query: 354 PFKGM-QRIFGGIITKIESFPWQVFF--------QNPR--AGGALIDEQWVLTAAHVVEG 500
+ +RI GG + FPWQ N + GAL+ E W+LTAAHV+
Sbjct: 442 SLPNLVKRIIGGRNAEPGLFPWQALIVVEDTSRVPNDKWFGSGALLSESWILTAAHVLRS 501
Query: 501 NRE-----PV------MYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDND 647
R PV +Y+G V A +A +V +HP + Q N+++D
Sbjct: 502 QRRDNTVTPVSKEHVTVYLGLHDVRDKSGAVNS--SAAQVVLHPDFNIQ------NYNHD 553
Query: 648 IALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTN---TKDHVVK----- 803
IALV+L++PV +GP V PICLP + P LGL++GWG +N T D ++
Sbjct: 554 IALVQLREPVPLGPHVMPICLPSPEPE-GPEPHMLGLVAGWGISNPNVTVDEIISSGTRT 612
Query: 804 ----LRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAF 965
L+ KLPV P +C+ + + ++ T+NM CAG G D+C GDSGGAF
Sbjct: 613 LSDVLQYVKLPVVPYAECK----TSYESRSGNYSVTENMFCAGYYEGGKDTCLGDSGGAF 668
Query: 966 AMQVPNEETPKFYVAGLVSWG--PQCGT---YGIYTRVKNYIDWIRETM 1097
+ ++ + ++ GLVSWG +CG+ YG+YT+V NY+DW+ E M
Sbjct: 669 V--ILDDLSQRWVAQGLVSWGGPEECGSKQVYGVYTKVSNYVDWLWEQM 715
>ref|XP_545245.2| PREDICTED: similar to mannan-binding lectin serine protease 1 isoform
2 precursor isoform 1 [Canis familiaris].
Length = 697
Score = 231 bits (588), Expect = 2e-60
Identities = 148/409 (36%), Positives = 215/409 (52%), Gaps = 44/409 (10%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V I+C G++V++ V +F C +G WSN C+ DCG+P + HG +
Sbjct: 291 KDQVLISCDTGYKVLKDNVEMDTFQIECLKDGTWSNRIPTCKIADCGAPAELKHGLITFS 350
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S +YSC+QPYY M + + Y C+ G W+NE+LG P C+PVCG PS
Sbjct: 351 TRNNLTTYKSEIQYSCQQPYYKMLHNITGVYTCSAQGVWMNEVLGRSQPTCLPVCGQPSR 410
Query: 354 PFKGM-QRIFGGIITKIESFPWQVFF--------QNPR--AGGALIDEQWVLTAAHVVEG 500
+ +RI GG + FPWQ N + GAL+ E W+LTAAHV+
Sbjct: 411 SLPNLVKRIIGGRNAEPGLFPWQALIVVEDTSRVPNDKWFGSGALLSESWILTAAHVLRS 470
Query: 501 NRE-----PV------MYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDND 647
R PV +Y+G V A +A +V +HP + Q N+++D
Sbjct: 471 QRRDNTVTPVSKEHVTVYLGLHDVRDKSGAVNS--SAAQVVLHPDFNIQ------NYNHD 522
Query: 648 IALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTN---TKDHVVK----- 803
IALV+L++PV +GP V PICLP + P LGL++GWG +N T D ++
Sbjct: 523 IALVQLREPVPLGPHVMPICLPSPEPE-GPEPHMLGLVAGWGISNPNVTVDEIISSGTRT 581
Query: 804 ----LRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAF 965
L+ KLPV P +C+ + + ++ T+NM CAG G D+C GDSGGAF
Sbjct: 582 LSDVLQYVKLPVVPYAECK----TSYESRSGNYSVTENMFCAGYYEGGKDTCLGDSGGAF 637
Query: 966 AMQVPNEETPKFYVAGLVSWG--PQCGT---YGIYTRVKNYIDWIRETM 1097
+ ++ + ++ GLVSWG +CG+ YG+YT+V NY+DW+ E M
Sbjct: 638 V--ILDDLSQRWVAQGLVSWGGPEECGSKQVYGVYTKVSNYVDWLWEQM 684
>ref|XP_861032.1| PREDICTED: similar to mannan-binding lectin serine protease 1 isoform
1 precursor isoform 3 [Canis familiaris].
Length = 699
Score = 204 bits (518), Expect = 2e-52
Identities = 129/396 (32%), Positives = 195/396 (49%), Gaps = 28/396 (7%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V I+C G++V++ V +F C +G WSN C+ DCG+P + HG +
Sbjct: 322 KDQVLISCDTGYKVLKDNVEMDTFQIECLKDGTWSNRIPTCKIADCGAPAELKHGLITFS 381
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S +YSC+QPYY M + + Y C+ G W+NE+LG P C+PVCG+P
Sbjct: 382 TRNNLTTYKSEIQYSCQQPYYKMLHNITGVYTCSAQGVWMNEVLGRSQPTCLPVCGVPKF 441
Query: 354 PFKGMQRIFGGIITKIESFPWQVFF----QNPRAGGALIDEQWVLTAAHVVEGNRE---P 512
K M RIF G + + PW + P GG+L+ W++TAAH + + + P
Sbjct: 442 SRKLMARIFNGRPVQKGTTPWIAMLSYPNEQPFCGGSLLGSSWIVTAAHCLHQSLDSEYP 501
Query: 513 VMYVGS-------SSVVTSHL-----ANGQMLTAERVFIHPGWEEQDASERKNFDNDIAL 656
++ ++ H N Q L +R+F+HP ++ F+ND+AL
Sbjct: 502 ALHDSDLLRPSDFKVIMGKHWRRRSDGNEQHLRVKRIFLHPLYDP------NTFENDVAL 555
Query: 657 VRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPS 836
V L + + V PICLP + P G + ++SGWG+ + L ++P+
Sbjct: 556 VELLESPVLNDFVMPICLP----EEPPEEGAIVIVSGWGKQFLQRFPETLMEIEIPIVDH 611
Query: 837 DKCQEIKGANPRIGTSSFVFTDNMICAGGR--GVDSCNGDSGGAFAMQVPNEETPKFYVA 1010
CQE + T +MICAG + G D+C GDSGG M + E ++Y+
Sbjct: 612 HTCQEAYAPLRK------KVTRDMICAGEKEGGKDACAGDSGG--PMVTLDRERGQWYLV 663
Query: 1011 GLVSWGPQCG---TYGIYTRVKNYIDWI-RETMQQN 1106
G VSWG CG YG+Y+ + + DWI R T +N
Sbjct: 664 GTVSWGEDCGKKDRYGVYSYIYHNKDWIQRVTRMRN 699
>ref|XP_536799.2| PREDICTED: similar to Haptoglobin precursor isoform 1 [Canis
familiaris].
Length = 347
Score = 174 bits (440), Expect = 2e-43
Identities = 112/342 (32%), Positives = 170/342 (49%), Gaps = 17/342 (4%)
Frame = +3
Query: 132 VDCGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGA 311
V P I +G VE + RY C+ P+Y + T+G Y W N+ +G
Sbjct: 31 VSLPKPPVIENGYVEH--------MIRYQCK-PFYKLHTEGDGVYTLNSEKHWTNKAVGE 81
Query: 312 ELPKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALIDEQWVLTA 482
+LP+C VCG P P +QRI GG + SFPWQ V N +G LI+EQW+LT
Sbjct: 82 KLPECEAVCGKPKNPVDQVQRIMGGSVDAKGSFPWQAKMVSHHNLTSGATLINEQWLLTT 141
Query: 483 A-HVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALV 659
A ++ G+++ + + ++ Q++ E+V +HP + + DI L+
Sbjct: 142 AKNLFLGHKDDAKANDIAPTLKLYVGKNQLVEVEKVVLHPDYSKV----------DIGLI 191
Query: 660 RLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSD 839
+LK V + V PICLP S DY VG +G +SGWGR + + L+ LPVA D
Sbjct: 192 KLKQKVPIDERVMPICLP--SKDY-AEVGRIGYVSGWGRNSNFNFTELLKYVMLPVADQD 248
Query: 840 KC---------QEIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNE 986
KC E K +G + ++ CAG D+C GD+G AFA+ +E
Sbjct: 249 KCVQHYEGSTVPEKKSPKSPVGVQP-ILNEHTFCAGMSKFQEDTCYGDAGSAFAVHDQDE 307
Query: 987 ETPKFYVAGLVSWGPQC--GTYGIYTRVKNYIDWIRETMQQN 1106
+T +Y AG++S+ C YG+Y +V + + W++ET+ N
Sbjct: 308 DT--WYAAGILSFDKSCTVAEYGVYVKVPSVLAWVQETIAGN 347
>ref|XP_850996.1| PREDICTED: similar to Haptoglobin precursor isoform 2 [Canis
familiaris].
Length = 347
Score = 174 bits (440), Expect = 2e-43
Identities = 112/342 (32%), Positives = 170/342 (49%), Gaps = 17/342 (4%)
Frame = +3
Query: 132 VDCGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGA 311
V P I +G VE + RY C+ P+Y + T+G Y W N+ +G
Sbjct: 31 VSLPKPPVIENGYVEH--------MIRYQCK-PFYKLHTEGDGVYTLNSEKHWTNKAVGE 81
Query: 312 ELPKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALIDEQWVLTA 482
+LP+C VCG P P +QRI GG + SFPWQ V N +G LI+EQW+LT
Sbjct: 82 KLPECEAVCGKPKNPVDQVQRIMGGSVDAKGSFPWQAKMVSHHNLTSGATLINEQWLLTT 141
Query: 483 A-HVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALV 659
A ++ G+++ + + ++ Q++ E+V +HP + + DI L+
Sbjct: 142 AKNLFLGHKDDAKANDIAPTLKLYVGKNQLVEVEKVVLHPDYSKV----------DIGLI 191
Query: 660 RLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSD 839
+LK V + V PICLP S DY VG +G +SGWGR + + L+ LPVA D
Sbjct: 192 KLKQKVPIDERVMPICLP--SKDY-AEVGRIGYVSGWGRNSNFNFTELLKYVMLPVADQD 248
Query: 840 KC---------QEIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNE 986
KC E K +G + ++ CAG D+C GD+G AFA+ +E
Sbjct: 249 KCVQHYEGSTVPEKKSPKSPVGVQP-ILNEHTFCAGMSKFQEDTCYGDAGSAFAVHDQDE 307
Query: 987 ETPKFYVAGLVSWGPQC--GTYGIYTRVKNYIDWIRETMQQN 1106
+T +Y AG++S+ C YG+Y +V + + W++ET+ N
Sbjct: 308 DT--WYAAGILSFDKSCTVAEYGVYVKVPSVLAWVQETIAGN 347
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,497,576
Number of extensions: 1812389
Number of successful extensions: 6121
Number of sequences better than 1.0e-05: 128
Number of HSP's gapped: 5676
Number of HSP's successfully gapped: 153
Length of query: 480
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 373
Effective length of database: 15,307,552
Effective search space: 5709716896
Effective search space used: 5709716896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007372
(1441 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001725.1| complement C1s subcomponent precursor [Homo sap... 582 e-166
Alignment gi|NP_958850.1| complement C1s subcomponent precursor [Homo sap... 582 e-166
Alignment gi|NP_001724.3| complement C1r subcomponent precursor [Homo sap... 247 2e-65
Alignment gi|NP_624302.1| mannan-binding lectin serine protease 1 isoform... 229 4e-60
Alignment gi|NP_006601.2| mannan-binding lectin serine protease 2 isoform... 224 2e-58
Alignment gi|NP_001870.3| mannan-binding lectin serine protease 1 isoform... 196 6e-50
Alignment gi|NP_005134.1| haptoglobin isoform 1 preproprotein [Homo sapie... 174 2e-43
Alignment gi|NP_001119574.1| haptoglobin isoform 2 preproprotein [Homo sa... 172 5e-43
Alignment gi|NP_057630.2| complement C1r subcomponent-like protein precur... 166 5e-41
Alignment gi|NP_066275.3| haptoglobin-related protein precursor [Homo sap... 156 4e-38
>ref|NP_001725.1| complement C1s subcomponent precursor [Homo sapiens].
Length = 688
Score = 582 bits (1501), Expect = e-166
Identities = 276/376 (73%), Positives = 312/376 (82%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
+DVV+ITCLDGFEVV+G VG+TSFYSTCQSNGKWSNSKL+CQPVDCG PE I +GKVEDP
Sbjct: 314 RDVVQITCLDGFEVVEGRVGATSFYSTCQSNGKWSNSKLKCQPVDCGIPESIENGKVEDP 373
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
E TLFGSV RY+CE+PYYYME G EY CAGNGSWVNE+LG ELPKCVPVCG+P EPF+
Sbjct: 374 ESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPELPKCVPVCGVPREPFE 433
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
QRI GG I++FPWQVFF NP AGGALI+E WVLTAAHVVEGNREP MYVGS+SV
Sbjct: 434 EKQRIIGGSDADIKNFPWQVFFDNPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQ 493
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDASE-RKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
TS LA +MLT E VFIHPGW+ + E R NFDNDIALVRLKDPVKMGPTVSPICLPGT
Sbjct: 494 TSRLAKSKMLTPEHVFIHPGWKLLEVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGT 553
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SSDY+ GDLGLISGWGRT +D V+L+ A+LPVAP KC+E+K P ++VFT
Sbjct: 554 SSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFT 613
Query: 900 DNMICAGG-RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYI 1076
NMICAGG +G+DSC GDSGGAFA+Q PN++T KFY AGLVSWGPQCGTYG+YTRVKNY+
Sbjct: 614 PNMICAGGEKGMDSCKGDSGGAFAVQDPNDKT-KFYAAGLVSWGPQCGTYGLYTRVKNYV 672
Query: 1077 DWIRETMQQNSAPSVD 1124
DWI +TMQ+NS P D
Sbjct: 673 DWIMKTMQENSTPRED 688
>ref|NP_958850.1| complement C1s subcomponent precursor [Homo sapiens].
Length = 688
Score = 582 bits (1501), Expect = e-166
Identities = 276/376 (73%), Positives = 312/376 (82%), Gaps = 2/376 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
+DVV+ITCLDGFEVV+G VG+TSFYSTCQSNGKWSNSKL+CQPVDCG PE I +GKVEDP
Sbjct: 314 RDVVQITCLDGFEVVEGRVGATSFYSTCQSNGKWSNSKLKCQPVDCGIPESIENGKVEDP 373
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
E TLFGSV RY+CE+PYYYME G EY CAGNGSWVNE+LG ELPKCVPVCG+P EPF+
Sbjct: 374 ESTLFGSVIRYTCEEPYYYMENGGGGEYHCAGNGSWVNEVLGPELPKCVPVCGVPREPFE 433
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
QRI GG I++FPWQVFF NP AGGALI+E WVLTAAHVVEGNREP MYVGS+SV
Sbjct: 434 EKQRIIGGSDADIKNFPWQVFFDNPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQ 493
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDASE-RKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
TS LA +MLT E VFIHPGW+ + E R NFDNDIALVRLKDPVKMGPTVSPICLPGT
Sbjct: 494 TSRLAKSKMLTPEHVFIHPGWKLLEVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGT 553
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SSDY+ GDLGLISGWGRT +D V+L+ A+LPVAP KC+E+K P ++VFT
Sbjct: 554 SSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFT 613
Query: 900 DNMICAGG-RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYI 1076
NMICAGG +G+DSC GDSGGAFA+Q PN++T KFY AGLVSWGPQCGTYG+YTRVKNY+
Sbjct: 614 PNMICAGGEKGMDSCKGDSGGAFAVQDPNDKT-KFYAAGLVSWGPQCGTYGLYTRVKNYV 672
Query: 1077 DWIRETMQQNSAPSVD 1124
DWI +TMQ+NS P D
Sbjct: 673 DWIMKTMQENSTPRED 688
>ref|NP_001724.3| complement C1r subcomponent precursor [Homo sapiens].
Length = 705
Score = 247 bits (630), Expect = 2e-65
Identities = 146/389 (37%), Positives = 209/389 (53%), Gaps = 22/389 (5%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
+D TC G+++++G SF + CQ +G W + RC+ DCG P +P+G D
Sbjct: 331 RDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRNLPNG---DF 387
Query: 183 EHTLFGSVTRYS------CEQPYYYMETD-GSEE-----YRCAGNGSWVNELLGAELPKC 326
+T V Y C +PYY M+T GS E Y C G W NE G ++P+C
Sbjct: 388 RYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRC 447
Query: 327 VPVCGIPSEPFKGMQRIFGGIITKIESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVVEGN 503
+PVCG P P + QRI GG K+ +FPWQVF + R GGAL+ ++W+LTAAH +
Sbjct: 448 LPVCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGRGGGALLGDRWILTAAHTLYPK 507
Query: 504 REPVMYVGSSSVVTSHLANGQML-----TAERVFIHPGWEEQDASERKNFDNDIALVRLK 668
S V H +++ RV +HP + + E NF+ DIAL+ L+
Sbjct: 508 EHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQ---DESYNFEGDIALLELE 564
Query: 669 DPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQ 848
+ V +GP + PICLP + YD +G +G +SG+G K LR +LPVA C+
Sbjct: 565 NSVTLGPNLLPICLPDNDTFYD--LGLMGYVSGFGVMEEK-IAHDLRFVRLPVANPQACE 621
Query: 849 E-IKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKFYVAGLV 1019
++G N VF+ NM CAG + D+C GDSGG FA++ PN T ++ G+V
Sbjct: 622 NWLRGKN-----RMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPN--TDRWVATGIV 674
Query: 1020 SWGPQCGT-YGIYTRVKNYIDWIRETMQQ 1103
SWG C YG YT+V NY+DWI++ M++
Sbjct: 675 SWGIGCSRGYGFYTKVLNYVDWIKKEMEE 703
>ref|NP_624302.1| mannan-binding lectin serine protease 1 isoform 2 precursor [Homo
sapiens].
Length = 728
Score = 229 bits (585), Expect = 4e-60
Identities = 143/407 (35%), Positives = 215/407 (52%), Gaps = 42/407 (10%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V ++C G++V++ V +F C +G WSN C+ VDC +P + HG +
Sbjct: 322 KDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFS 381
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S +YSC++PYY M + + Y C+ G W+N++LG LP C+P CG PS
Sbjct: 382 TRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTCLPECGQPSR 441
Query: 354 PFKGM-QRIFGGIITKIESFPWQVFF--------QNPR--AGGALIDEQWVLTAAHVVEG 500
+ +RI GG + FPWQ N + GAL+ W+LTAAHV+
Sbjct: 442 SLPSLVKRIIGGRNAEPGLFPWQALIVVEDTSRVPNDKWFGSGALLSASWILTAAHVLRS 501
Query: 501 NREPVMYVG-SSSVVTSHL--------ANGQMLTAERVFIHPGWEEQDASERKNFDNDIA 653
R + S VT +L + +A RV +HP + Q N+++DIA
Sbjct: 502 QRRDTTVIPVSKEHVTVYLGLHDVRDKSGAVNSSAARVVLHPDFNIQ------NYNHDIA 555
Query: 654 LVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTN---TKDHVVK------- 803
LV+L++PV +GP V P+CLP + P+ LGL++GWG +N T D ++
Sbjct: 556 LVQLQEPVPLGPHVMPVCLPRLEPE-GPAPHMLGLVAGWGISNPNVTVDEIISSGTRTLS 614
Query: 804 --LRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAFAM 971
L+ KLPV P +C+ + + ++ T+NM CAG G D+C GDSGGAF
Sbjct: 615 DVLQYVKLPVVPHAECK----TSYESRSGNYSVTENMFCAGYYEGGKDTCLGDSGGAFV- 669
Query: 972 QVPNEETPKFYVAGLVSWG--PQCGT---YGIYTRVKNYIDWIRETM 1097
+ ++ + ++ V GLVSWG +CG+ YG+YT+V NY+DW+ E M
Sbjct: 670 -IFDDLSQRWVVQGLVSWGGPEECGSKQVYGVYTKVSNYVDWVWEQM 715
>ref|NP_006601.2| mannan-binding lectin serine protease 2 isoform 1 preproprotein [Homo
sapiens].
Length = 686
Score = 224 bits (571), Expect = 2e-58
Identities = 137/375 (36%), Positives = 190/375 (50%), Gaps = 14/375 (3%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVE-- 176
KD I C G+E++QG + SF + CQ +G W C VDCG P+ +P G+VE
Sbjct: 321 KDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDDLPSGRVEYI 380
Query: 177 -DPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
P T + +V +YSCE+ +Y M+ + +Y C +G W + LP C PVCG+ +
Sbjct: 381 TGPGVTTYKAVIQYSCEETFYTMKVNDG-KYVCEADGFWTSSKGEKSLPVCEPVCGLSAR 439
Query: 354 PFKGMQRIFGGIITKIESFPWQV-FFQNPRAGGALIDEQWVLTAAHVVEGNREPV----M 518
G RI+GG K FPWQV A GAL+ + WVLTAAH V + +
Sbjct: 440 TTGG--RIYGGQKAKPGDFPWQVLILGGTTAAGALLYDNWVLTAAHAVYEQKHDASALDI 497
Query: 519 YVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVS 698
+G+ ++ H +E VFIH G+ + FDNDIAL++L + V + ++
Sbjct: 498 RMGTLKRLSPHYTQA---WSEAVFIHEGY-----THDAGFDNDIALIKLNNKVVINSNIT 549
Query: 699 PICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIG 878
PICLP ++ D+G SGWG T L +P+ KC P
Sbjct: 550 PICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPR 609
Query: 879 TSSFVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP----QCG 1040
S T NM+CAG G DSC GDSGGA + ET +++V G+VSWG + G
Sbjct: 610 GS---VTANMLCAGLESGGKDSCRGDSGGALVFL--DSETERWFVGGIVSWGSMNCGEAG 664
Query: 1041 TYGIYTRVKNYIDWI 1085
YG+YT+V NYI WI
Sbjct: 665 QYGVYTKVINYIPWI 679
>ref|NP_001870.3| mannan-binding lectin serine protease 1 isoform 1 precursor [Homo
sapiens].
Length = 699
Score = 196 bits (497), Expect = 6e-50
Identities = 122/389 (31%), Positives = 187/389 (48%), Gaps = 27/389 (6%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V ++C G++V++ V +F C +G WSN C+ VDC +P + HG +
Sbjct: 322 KDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKIVDCRAPGELEHGLITFS 381
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S +YSC++PYY M + + Y C+ G W+N++LG LP C+PVCG+P
Sbjct: 382 TRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRSLPTCLPVCGLPKF 441
Query: 354 PFKGMQRIFGGIITKIESFPWQVFFQN----PRAGGALIDEQWVLTAAHVVEGNREPVMY 521
K M RIF G + + PW + P GG+L+ W++TAAH + + +P
Sbjct: 442 SRKLMARIFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPEDP 501
Query: 522 VGSSSVVTSHL---------------ANGQMLTAERVFIHPGWEEQDASERKNFDNDIAL 656
S + S N Q L + +HP ++ F+ND+AL
Sbjct: 502 TLRDSDLLSPSDFKIILGKHWRLRSDENEQHLGVKHTTLHPQYDPN------TFENDVAL 555
Query: 657 VRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPS 836
V L + + V PICLP + G + ++SGWG+ + L ++P+
Sbjct: 556 VELLESPVLNAFVMPICLP----EGPQQEGAMVIVSGWGKQFLQRFPETLMEIEIPIVDH 611
Query: 837 DKCQEIKGANPRIGTSSFVFTDNMICAGGR--GVDSCNGDSGGAFAMQVPNEETPKFYVA 1010
CQ+ + T +MICAG + G D+C GDSGG M N E ++Y+
Sbjct: 612 STCQKAYAPLKK------KVTRDMICAGEKEGGKDACAGDSGG--PMVTLNRERGQWYLV 663
Query: 1011 GLVSWGPQCG---TYGIYTRVKNYIDWIR 1088
G VSWG CG YG+Y+ + + DWI+
Sbjct: 664 GTVSWGDDCGKKDRYGVYSYIHHNKDWIQ 692
>ref|NP_005134.1| haptoglobin isoform 1 preproprotein [Homo sapiens].
Length = 406
Score = 174 bits (440), Expect = 2e-43
Identities = 118/365 (32%), Positives = 175/365 (47%), Gaps = 23/365 (6%)
Frame = +3
Query: 81 TCQSNGKWSNSKL-----RCQPVD-CGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYM 242
T +W N + C+ D C P I HG VE H++ RY C+ YY +
Sbjct: 67 TLNDKKQWINKAVGDKLPECEADDGCPKPPEIAHGYVE---HSV-----RYQCKN-YYKL 117
Query: 243 ETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ- 419
T+G Y W+N+ +G +LP+C VCG P P +QRI GG + SFPWQ
Sbjct: 118 RTEGDGVYTLNNEKQWINKAVGDKLPECEAVCGKPKNPANPVQRILGGHLDAKGSFPWQA 177
Query: 420 --VFFQNPRAGGALIDEQWVLTAA-HVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVF 590
V N G LI+EQW+LT A ++ + E + +T ++ Q++ E+V
Sbjct: 178 KMVSHHNLTTGATLINEQWLLTTAKNLFLNHSENATAKDIAPTLTLYVGKKQLVEIEKVV 237
Query: 591 IHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGW 770
+HP + + DI L++LK V + V PICLP S DY VG +G +SGW
Sbjct: 238 LHPNYSQV----------DIGLIKLKQKVSVNERVMPICLP--SKDY-AEVGRVGYVSGW 284
Query: 771 GRTNTKDHVVKLRGAKLPVAPSDKC---------QEIKGANPRIGTSSFVFTDNMICAGG 923
GR L+ LPVA D+C E K +G + ++ CAG
Sbjct: 285 GRNANFKFTDHLKYVMLPVADQDQCIRHYEGSTVPEKKTPKSPVGVQP-ILNEHTFCAGM 343
Query: 924 RGV--DSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGT--YGIYTRVKNYIDWIRE 1091
D+C GD+G AFA+ E+T +Y G++S+ C YG+Y +V + DW+++
Sbjct: 344 SKYQEDTCYGDAGSAFAVHDLEEDT--WYATGILSFDKSCAVAEYGVYVKVTSIQDWVQK 401
Query: 1092 TMQQN 1106
T+ +N
Sbjct: 402 TIAEN 406
>ref|NP_001119574.1| haptoglobin isoform 2 preproprotein [Homo sapiens].
Length = 347
Score = 172 bits (437), Expect = 5e-43
Identities = 113/340 (33%), Positives = 167/340 (49%), Gaps = 17/340 (5%)
Frame = +3
Query: 138 CGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAEL 317
C P I HG VE H++ RY C+ YY + T+G Y W+N+ +G +L
Sbjct: 33 CPKPPEIAHGYVE---HSV-----RYQCKN-YYKLRTEGDGVYTLNNEKQWINKAVGDKL 83
Query: 318 PKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALIDEQWVLTAA- 485
P+C VCG P P +QRI GG + SFPWQ V N G LI+EQW+LT A
Sbjct: 84 PECEAVCGKPKNPANPVQRILGGHLDAKGSFPWQAKMVSHHNLTTGATLINEQWLLTTAK 143
Query: 486 HVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRL 665
++ + E + +T ++ Q++ E+V +HP + + DI L++L
Sbjct: 144 NLFLNHSENATAKDIAPTLTLYVGKKQLVEIEKVVLHPNYSQV----------DIGLIKL 193
Query: 666 KDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKC 845
K V + V PICLP S DY VG +G +SGWGR L+ LPVA D+C
Sbjct: 194 KQKVSVNERVMPICLP--SKDY-AEVGRVGYVSGWGRNANFKFTDHLKYVMLPVADQDQC 250
Query: 846 ---------QEIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEET 992
E K +G + ++ CAG D+C GD+G AFA+ E+T
Sbjct: 251 IRHYEGSTVPEKKTPKSPVGVQP-ILNEHTFCAGMSKYQEDTCYGDAGSAFAVHDLEEDT 309
Query: 993 PKFYVAGLVSWGPQCGT--YGIYTRVKNYIDWIRETMQQN 1106
+Y G++S+ C YG+Y +V + DW+++T+ +N
Sbjct: 310 --WYATGILSFDKSCAVAEYGVYVKVTSIQDWVQKTIAEN 347
>ref|NP_057630.2| complement C1r subcomponent-like protein precursor [Homo sapiens].
Length = 487
Score = 166 bits (420), Expect = 5e-41
Identities = 106/303 (34%), Positives = 152/303 (50%), Gaps = 10/303 (3%)
Frame = +3
Query: 219 CEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITK 398
C++PYY G+ CA G+W + G E+ +C+PVCG P P Q G K
Sbjct: 195 CQEPYYQAAAAGA--LTCATPGTWKDRQDGEEVLQCMPVCGRPVTPIAQNQTTLGSSRAK 252
Query: 399 IESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSS-SVVTSHLANGQML 572
+ +FPWQ F + R GGAL+ ++W+LTAAH + + S +V H A +ML
Sbjct: 253 LGNFPWQAFTSIHGRGGGALLGDRWILTAAHTIYPKDSVSLRKNQSVNVFLGHTAIDEML 312
Query: 573 -----TAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDP 737
RV +HP + + +E NF DIAL+ L+ + +GP V P+CLP + Y
Sbjct: 313 KLGNHPVHRVVVHPDYRQ---NESHNFSGDIALLELQHSIPLGPNVLPVCLPDNETLY-- 367
Query: 738 SVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICA 917
G LG +SG+G +L+ ++LPVAP + C R VF+DNM C
Sbjct: 368 RSGLLGYVSGFG-MEMGWLTTELKYSRLPVAPREACNAWLQKRQR----PEVFSDNMFCV 422
Query: 918 GG--RGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGT-YGIYTRVKNYIDWIR 1088
G + C GDSG + V + + G+VSWG CG Y YT+V +Y+DWI+
Sbjct: 423 GDETQRHSVCQGDSGSVYV--VWDNHAHHWVATGIVSWGIGCGEGYDFYTKVLSYVDWIK 480
Query: 1089 ETM 1097
M
Sbjct: 481 GVM 483
>ref|NP_066275.3| haptoglobin-related protein precursor [Homo sapiens].
Length = 348
Score = 156 bits (395), Expect = 4e-38
Identities = 105/337 (31%), Positives = 163/337 (48%), Gaps = 17/337 (5%)
Frame = +3
Query: 147 PEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKC 326
P I +G VE + RY C+ YY + T+G Y W+N+ +G +LP+C
Sbjct: 37 PPEIANGYVEH--------LFRYQCKN-YYRLRTEGDGVYTLNDKKQWINKAVGDKLPEC 87
Query: 327 VPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALIDEQWVLTAA-HVV 494
VCG P P +QRI GG + SFPWQ V N G LI+EQW+LT A ++
Sbjct: 88 EAVCGKPKNPANPVQRILGGHLDAKGSFPWQAKMVSHHNLTTGATLINEQWLLTTAKNLF 147
Query: 495 EGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDP 674
+ E + +T ++ Q++ E+V +HP + + DI L++LK
Sbjct: 148 LNHSENATAKDIAPTLTLYVGKKQLVEIEKVVLHPNYHQV----------DIGLIKLKQK 197
Query: 675 VKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVA-------- 830
V + V PICLP S +Y VG +G +SGWG+++ L+ LPVA
Sbjct: 198 VLVNERVMPICLP--SKNY-AEVGRVGYVSGWGQSDNFKLTDHLKYVMLPVADQYDCITH 254
Query: 831 -PSDKCQEIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKF 1001
C + K +G + ++ C G D+C GD+G AFA+ E+T +
Sbjct: 255 YEGSTCPKWKAPKSPVGVQP-ILNEHTFCVGMSKYQEDTCYGDAGSAFAVHDLEEDT--W 311
Query: 1002 YVAGLVSWGPQCGT--YGIYTRVKNYIDWIRETMQQN 1106
Y AG++S+ C YG+Y +V + W+++T+ +N
Sbjct: 312 YAAGILSFDKSCAVAEYGVYVKVTSIQHWVQKTIAEN 348
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,431,852
Number of extensions: 1791357
Number of successful extensions: 6464
Number of sequences better than 1.0e-05: 159
Number of HSP's gapped: 5881
Number of HSP's successfully gapped: 195
Length of query: 480
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 374
Effective length of database: 14,802,980
Effective search space: 5536314520
Effective search space used: 5536314520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007372
(1441 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001091086.1| complement C1s-A subcomponent [Mus musculus]. 544 e-155
Alignment gi|NP_659187.2| complement C1s-A subcomponent [Mus musculus]. 544 e-155
Alignment gi|NP_776289.2| complement C1s-B subcomponent precursor [Mus mu... 539 e-153
Alignment gi|NP_075632.3| complement C1r-A subcomponent precursor [Mus mu... 233 2e-61
Alignment gi|NP_001106827.1| complement C1r-B subcomponent precursor [Mus... 227 2e-59
Alignment gi|NP_001003893.1| mannan-binding lectin serine protease 2 isof... 224 1e-58
Alignment gi|NP_032581.2| mannan-binding lectin serine protease 1 [Mus mu... 206 4e-53
Alignment gi|NP_851989.3| complement C1r subcomponent-like protein precur... 167 1e-41
Alignment gi|NP_059066.1| haptoglobin precursor [Mus musculus]. 163 3e-40
Alignment gi|NP_079859.2| chymotrypsinogen B precursor [Mus musculus]. 127 2e-29
>ref|NP_001091086.1| complement C1s-A subcomponent [Mus musculus].
Length = 694
Score = 544 bits (1402), Expect = e-155
Identities = 250/375 (66%), Positives = 304/375 (81%), Gaps = 1/375 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITC+DGFEVV+G V STS+YSTCQS+G+WSNS L+CQPV CG P+PI +GKVE+P
Sbjct: 320 KDVVKITCVDGFEVVEGHVSSTSYYSTCQSDGQWSNSGLKCQPVYCGIPDPIANGKVEEP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
E+++FG+V Y+CE+PYYYME + EYRCA NG WVN+ LG ELP+C+P CG+P+EPF+
Sbjct: 380 ENSVFGTVVHYTCEEPYYYMEHEEGGEYRCAANGRWVNDQLGIELPRCIPACGVPTEPFQ 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
QRIFGG KIE+FPWQVFF +PRA GALI+E WVLTAAHV+E +P+MYVG+ SV
Sbjct: 440 VHQRIFGGQPAKIENFPWQVFFNHPRASGALINEYWVLTAAHVLEKISDPLMYVGTMSVR 499
Query: 543 TSHLANGQMLTAERVFIHPGW-EEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
T+ L N Q L ++RVFIHP W +E D + R NFDNDIALV+LKDPVKMGP VSPICLPGT
Sbjct: 500 TTLLENAQRLYSKRVFIHPSWKKEDDPNTRTNFDNDIALVQLKDPVKMGPKVSPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+Y+ S GD+GLISGWG T K V+ LRGAK+PV + C+++K NP + +VFT
Sbjct: 560 SSEYNVSPGDMGLISGWGSTEKKVFVINLRGAKVPVTSLETCKQVKEENPTVRPEDYVFT 619
Query: 900 DNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYID 1079
DNMICAG +GVDSC+GDSGGAFA QVPN PKFYVAGLVSWG +CGTYG+YT+VKNY+D
Sbjct: 620 DNMICAGEKGVDSCHGDSGGAFAFQVPNVTVPKFYVAGLVSWGKRCGTYGVYTKVKNYVD 679
Query: 1080 WIRETMQQNSAPSVD 1124
WI +TMQ+NS P D
Sbjct: 680 WILKTMQENSGPRKD 694
>ref|NP_659187.2| complement C1s-A subcomponent [Mus musculus].
Length = 694
Score = 544 bits (1402), Expect = e-155
Identities = 250/375 (66%), Positives = 304/375 (81%), Gaps = 1/375 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITC+DGFEVV+G V STS+YSTCQS+G+WSNS L+CQPV CG P+PI +GKVE+P
Sbjct: 320 KDVVKITCVDGFEVVEGHVSSTSYYSTCQSDGQWSNSGLKCQPVYCGIPDPIANGKVEEP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
E+++FG+V Y+CE+PYYYME + EYRCA NG WVN+ LG ELP+C+P CG+P+EPF+
Sbjct: 380 ENSVFGTVVHYTCEEPYYYMEHEEGGEYRCAANGRWVNDQLGIELPRCIPACGVPTEPFQ 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
QRIFGG KIE+FPWQVFF +PRA GALI+E WVLTAAHV+E +P+MYVG+ SV
Sbjct: 440 VHQRIFGGQPAKIENFPWQVFFNHPRASGALINEYWVLTAAHVLEKISDPLMYVGTMSVR 499
Query: 543 TSHLANGQMLTAERVFIHPGW-EEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
T+ L N Q L ++RVFIHP W +E D + R NFDNDIALV+LKDPVKMGP VSPICLPGT
Sbjct: 500 TTLLENAQRLYSKRVFIHPSWKKEDDPNTRTNFDNDIALVQLKDPVKMGPKVSPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+Y+ S GD+GLISGWG T K V+ LRGAK+PV + C+++K NP + +VFT
Sbjct: 560 SSEYNVSPGDMGLISGWGSTEKKVFVINLRGAKVPVTSLETCKQVKEENPTVRPEDYVFT 619
Query: 900 DNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYID 1079
DNMICAG +GVDSC+GDSGGAFA QVPN PKFYVAGLVSWG +CGTYG+YT+VKNY+D
Sbjct: 620 DNMICAGEKGVDSCHGDSGGAFAFQVPNVTVPKFYVAGLVSWGKRCGTYGVYTKVKNYVD 679
Query: 1080 WIRETMQQNSAPSVD 1124
WI +TMQ+NS P D
Sbjct: 680 WILKTMQENSGPRKD 694
>ref|NP_776289.2| complement C1s-B subcomponent precursor [Mus musculus].
Length = 694
Score = 539 bits (1389), Expect = e-153
Identities = 246/375 (65%), Positives = 300/375 (80%), Gaps = 1/375 (0%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITC+DGFEVV+G V STS+YSTCQS+G+WSNS L+CQPV CG P+PI +GKVE+P
Sbjct: 320 KDVVKITCVDGFEVVEGHVSSTSYYSTCQSDGQWSNSGLKCQPVYCGIPDPIANGKVEEP 379
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
E+++FG+V Y+CE+PYYYME + EYRCA NG WVN+ LG ELP+C+PVCG+P+EPF+
Sbjct: 380 ENSVFGTVIHYTCEEPYYYMEHEEGGEYRCAANGRWVNDQLGIELPRCIPVCGVPTEPFQ 439
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
Q+IFGG KIE+FPWQVFF +P AGGALI+E WVLTAAHVVE N +P MY G +++
Sbjct: 440 VQQKIFGGQPAKIENFPWQVFFNHPTAGGALINEYWVLTAAHVVEKNSDPSMYAGITALR 499
Query: 543 TSHLANGQMLTAERVFIHPGW-EEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGT 719
+ L N Q L +RV IHPGW E+ D + R NFDNDIALV+LKDPVKMGP SPICLPGT
Sbjct: 500 LADLENAQRLYTKRVIIHPGWKEDDDLNPRTNFDNDIALVQLKDPVKMGPKFSPICLPGT 559
Query: 720 SSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFT 899
SS+Y+ S GD+GLISGWGRT + HV+ LRGAK+PV + C+++K NP +V T
Sbjct: 560 SSEYNLSPGDMGLISGWGRTEKRLHVINLRGAKVPVTSLETCKQVKEENPTARPEDYVIT 619
Query: 900 DNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYID 1079
DNMICAG +GVDSC GDSGGAFA QVPN + PKFYVAGLVSWG +CG YG+YT+VKNY+D
Sbjct: 620 DNMICAGEKGVDSCKGDSGGAFAFQVPNVKAPKFYVAGLVSWGKKCGAYGVYTKVKNYVD 679
Query: 1080 WIRETMQQNSAPSVD 1124
WI +TMQ+NS P D
Sbjct: 680 WILKTMQENSGPRKD 694
>ref|NP_075632.3| complement C1r-A subcomponent precursor [Mus musculus].
Length = 707
Score = 233 bits (595), Expect = 2e-61
Identities = 140/386 (36%), Positives = 203/386 (52%), Gaps = 21/386 (5%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGK---V 173
+D +TC G+++++G SF + CQ++G W + RC+ +CG P+ + +G +
Sbjct: 330 RDYFIVTCKQGYQLMEGNQALLSFTAVCQNDGTWHRAMPRCKIKNCGQPQSLSNGDFRYI 389
Query: 174 EDPEHTLFGSVTRYSCEQPYYYMETD-GSEE-----YRCAGNGSWVNELLGAELPKCVPV 335
T + + +Y C +PYY M T GS E Y C G W NE G ++P+C+PV
Sbjct: 390 TTKGVTTYEASIQYHCHEPYYKMLTRAGSSESMRGIYTCTAQGIWKNEEEGEKMPRCLPV 449
Query: 336 CGIPSEPFKGMQRIFGGIITKIESFPWQVF-FQNPRAGGALIDEQWVLTAAHVV------ 494
CG P P +RI G + +FPWQ F + R GGAL+ ++W+LTAAH +
Sbjct: 450 CGKPVNPVTQKERIIRGQPARPGNFPWQAFTTTHGRGGGALLGDRWILTAAHTIYPKHHN 509
Query: 495 --EGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLK 668
N P M V + RV IHP + + E NF+ DIAL+ L+
Sbjct: 510 KENDNANPKMLVFLGHTNVEQIKKLGHHPVRRVIIHPDYRQ---DEPNNFEGDIALLELE 566
Query: 669 DPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQ 848
+ V +GP + PICLP + Y G +G +SG+G T K LR +LPVA S+ CQ
Sbjct: 567 NSVTLGPELLPICLPDNETFY--GQGLMGYVSGFGITEDK-LAFDLRFVRLPVADSEACQ 623
Query: 849 EIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKFYVAGLVS 1022
+ + TS F+ NM C+G V D+C GDSGG FA++ N + + G+VS
Sbjct: 624 --RWLQTKKDTSP--FSQNMFCSGDPAVQQDACQGDSGGVFAVRDRNRDI--WVATGIVS 677
Query: 1023 WGPQCGT-YGIYTRVKNYIDWIRETM 1097
WG CG YG YT+V NY+DWI++ M
Sbjct: 678 WGIGCGEGYGFYTKVLNYVDWIKKEM 703
>ref|NP_001106827.1| complement C1r-B subcomponent precursor [Mus musculus].
Length = 706
Score = 227 bits (579), Expect = 2e-59
Identities = 137/392 (34%), Positives = 206/392 (52%), Gaps = 27/392 (6%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGK---V 173
+D +TC G+++++G SF + CQ +G W + RC+ +CG P+ + +G +
Sbjct: 330 RDYFTVTCKQGYQLMEGNQALLSFTAVCQHDGTWHRAMPRCKIKNCGQPQSLSNGDFRYI 389
Query: 174 EDPEHTLFGSVTRYSCEQPYYYMETD-GSEE-----YRCAGNGSWVNELLGAELPKCVPV 335
T + + +Y C +PYY M T GS E Y C G W NE G ++P+C+PV
Sbjct: 390 TTKGVTTYEASIQYHCHEPYYKMLTRAGSSESMRGIYTCTAQGIWKNEEEGEKMPRCLPV 449
Query: 336 CGIPSEPFKGMQRIFGGIITKIESFPWQVF--FQNPRAGGALIDEQWVLTAAHVV----- 494
CG P P +RI GG + +FPWQ F P GGAL+ ++W+LTAAH +
Sbjct: 450 CGKPVNPVTQKERIIGGQPARPGNFPWQAFTTIYGP-GGGALLGDRWILTAAHTIYPKYP 508
Query: 495 ----EGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVR 662
N ++++G +++ + RV IHP + ++ E NF+ DIAL+
Sbjct: 509 NKGKNTNPRTLVFLGHTNM--EQIQKLGHHPVRRVIIHPDYRQE---EPDNFEGDIALLE 563
Query: 663 LKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDK 842
L++ V +GP + PICLP + Y G +G +SG+G T + LR +LPVA +
Sbjct: 564 LENSVTLGPELLPICLPDNETFY--GQGLMGYVSGFGTTGNR-IPFHLRFVRLPVADREA 620
Query: 843 CQE----IKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKFY 1004
CQ K +P F+ NM C+G V D+C GDSGG FA++ N + +
Sbjct: 621 CQRWLWTKKDTSP--------FSQNMFCSGDPAVQQDACQGDSGGVFAVRDRNRDI--WV 670
Query: 1005 VAGLVSWGPQCGT-YGIYTRVKNYIDWIRETM 1097
G+VSWG CG YG YT+V NY+DWI++ M
Sbjct: 671 ATGIVSWGIGCGEGYGFYTKVLNYVDWIKKEM 702
>ref|NP_001003893.1| mannan-binding lectin serine protease 2 isoform 1 [Mus musculus].
Length = 685
Score = 224 bits (571), Expect = 1e-58
Identities = 137/374 (36%), Positives = 192/374 (51%), Gaps = 13/374 (3%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVE-- 176
KD + C GFE++QG+V SF + CQ +G W C +DCG P+ +P+G V+
Sbjct: 321 KDRFSVFCKTGFELLQGSVPLKSFTAVCQKDGSWDRPMPECSIIDCGPPDDLPNGHVDYI 380
Query: 177 -DPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
PE T + +V +YSCE+ +Y M ++G +Y C +G W + P C PVCG+ +
Sbjct: 381 TGPEVTTYKAVIQYSCEETFYTMSSNG--KYVCEADGFWTSSKGEKLPPVCEPVCGLSTH 438
Query: 354 PFKGMQRIFGGIITKIESFPWQVFF--QNPRAGGALIDEQWVLTAAHVVEGNREPVMYVG 527
G RI GG K FPWQV Q A GALI + WVLTAAH V R +
Sbjct: 439 TIGG--RIVGGQPAKPGDFPWQVLLLGQTTAAAGALIHDNWVLTAAHAVYEKRMAASSLN 496
Query: 528 SSSVVTSHLA-NGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPI 704
+ L+ + E +FIH G+ + FDNDIAL++LK+ V + ++ P+
Sbjct: 497 IRMGILKRLSPHYTQAWPEEIFIHEGY-----THGAGFDNDIALIKLKNKVTINGSIMPV 551
Query: 705 CLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEI-KGANPRIGT 881
CLP + G ++GWG T L +P+A KC + + P +
Sbjct: 552 CLPRKEAASLMRTDFTGTVAGWGLTQKGLLARNLMFVDIPIADHQKCTAVYEKLYPGVRV 611
Query: 882 SSFVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP-QCGT--- 1043
S+ NM+CAG G DSC GDSGGA + ET +++V G+VSWG CG
Sbjct: 612 SA-----NMLCAGLETGGKDSCRGDSGGALVFL--DNETQRWFVGGIVSWGSINCGAADQ 664
Query: 1044 YGIYTRVKNYIDWI 1085
YG+YT+V NYI WI
Sbjct: 665 YGVYTKVINYIPWI 678
>ref|NP_032581.2| mannan-binding lectin serine protease 1 [Mus musculus].
Length = 704
Score = 206 bits (524), Expect = 4e-53
Identities = 128/389 (32%), Positives = 191/389 (49%), Gaps = 27/389 (6%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V ++C G++V++ +F C +G WSN C+ VDCG+P + HG V
Sbjct: 327 KDQVLVSCDTGYKVLKDNEVMDTFQIECLKDGAWSNKIPTCKIVDCGAPAGLKHGLVTFS 386
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S RYSC+QPYY M + + Y C+ +G+W NE+L LP C+PVCG+P
Sbjct: 387 TRNNLTTYKSEIRYSCQQPYYKMLHNTTGVYTCSAHGTWTNEVLKRSLPTCLPVCGVPKF 446
Query: 354 PFKGMQRIFGGIITKIESFPWQVFFQN----PRAGGALIDEQWVLTAAHVVEGNREPVMY 521
K + RIF G + + PW + P GG+L+ WVLTAAH + + +P
Sbjct: 447 SRKQISRIFNGRPAQKGTMPWIAMLSHLNGQPFCGGSLLGSNWVLTAAHCLHQSLDPEEP 506
Query: 522 VGSSSVVTSHL---------------ANGQMLTAERVFIHPGWEEQDASERKNFDNDIAL 656
SS + S + Q L +R +HP + F+ND+ L
Sbjct: 507 TLHSSYLLSPSDFKIIMGKHWRRRSDEDEQHLHVKRTTLHPLYNP------STFENDLGL 560
Query: 657 VRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPS 836
V L + ++ V P+CLP S + G + ++SGWG+ + L ++P+ S
Sbjct: 561 VELSESPRLNDFVMPVCLPEQPS----TEGTMVIVSGWGKQFLQRFPENLMEIEIPIVNS 616
Query: 837 DKCQEIKGANPRIGTSSFVFTDNMICAGGR--GVDSCNGDSGGAFAMQVPNEETPKFYVA 1010
D CQE + T +MICAG + G D+C GDSGG M + E ++Y+
Sbjct: 617 DTCQEAYTPLKK------KVTKDMICAGEKEGGKDACAGDSGG--PMVTKDAERDQWYLV 668
Query: 1011 GLVSWGPQCG---TYGIYTRVKNYIDWIR 1088
G+VSWG CG YG+Y+ + DWI+
Sbjct: 669 GVVSWGEDCGKKDRYGVYSYIYPNKDWIQ 697
>ref|NP_851989.3| complement C1r subcomponent-like protein precursor [Mus musculus].
Length = 482
Score = 167 bits (424), Expect = 1e-41
Identities = 106/306 (34%), Positives = 157/306 (51%), Gaps = 12/306 (3%)
Frame = +3
Query: 219 CEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITK 398
C+ PYY + G+ C + W + G E+P+CVPVCG P P FG K
Sbjct: 190 CQDPYYKADQTGT--LSCPSSWKWKDRQDGGEVPECVPVCGRPVVPLAENPNTFGSSRAK 247
Query: 399 IESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVV--------EGNREPVMYVGSSSVVTSH 551
+ +FPWQ F R GGAL+ ++W+LTAAH + N+ +++G + +
Sbjct: 248 LGNFPWQAFTSIYGRGGGALLGDRWILTAAHTIYPKDSIYLRRNQNVEVFLGHTDI--DE 305
Query: 552 LANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDY 731
L RV +HP + + E NF+ DIAL+ L+ V +GP + P+CLP + Y
Sbjct: 306 LLKLGNHPVRRVVVHPDYRQH---ESHNFNGDIALLELEQRVPLGPNLLPVCLPDNETLY 362
Query: 732 DPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMI 911
G G +SG+G KL+ +KLPVAP + C+ R + VF+DNM
Sbjct: 363 HS--GLWGYVSGFG-VEMGWLTTKLKYSKLPVAPREACEAWLHQRQR----TEVFSDNMF 415
Query: 912 CAGGR-GVDS-CNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGT-YGIYTRVKNYIDW 1082
C G V+S C GDSG + V ++ ++ G+VSWG CG YG YT+V +Y+DW
Sbjct: 416 CVGEEMQVNSVCQGDSGSVYV--VWDDLALRWVATGIVSWGIGCGKGYGFYTKVLSYMDW 473
Query: 1083 IRETMQ 1100
I+ ++
Sbjct: 474 IKRVIE 479
>ref|NP_059066.1| haptoglobin precursor [Mus musculus].
Length = 347
Score = 163 bits (413), Expect = 3e-40
Identities = 112/350 (32%), Positives = 163/350 (46%), Gaps = 17/350 (4%)
Frame = +3
Query: 108 NSKLRCQPVDCGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGS 287
N + + C P I +G VE + RY C Q +Y + +G Y
Sbjct: 23 NDAMDFEDDSCPKPPEIANGYVEH--------LVRYRCRQ-FYRLRAEGDGVYTLNDEKQ 73
Query: 288 WVNELLGAELPKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALI 458
WVN + G +LP+C VCG P P +QRI GG + SFPWQ + G LI
Sbjct: 74 WVNTVAGEKLPECEAVCGKPKHPVDQVQRIIGGSMDAKGSFPWQAKMISRHGLTTGATLI 133
Query: 459 DEQWVLTAA-HVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKN 635
+QW+LT A ++ + E + +T ++ Q++ E+V +HP
Sbjct: 134 SDQWLLTTAKNLFLNHSETASAKDITPTLTLYVGKNQLVEIEKVVLHPNHSVV------- 186
Query: 636 FDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGA 815
DI L++LK V + V PICLP S DY + G +G +SGWGR +L+
Sbjct: 187 ---DIGLIKLKQRVLVTERVMPICLP--SKDY-IAPGRVGYVSGWGRNANFRFTDRLKYV 240
Query: 816 KLPVAPSDKC---------QEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGA 962
LPVA DKC E K +G + ++ CAG D+C GD+G A
Sbjct: 241 MLPVADQDKCVVHYENSTVPEKKNLTSPVGVQP-ILNEHTFCAGLTKYQEDTCYGDAGSA 299
Query: 963 FAMQVPNEETPKFYVAGLVSWGPQCGT--YGIYTRVKNYIDWIRETMQQN 1106
FA+ E+T +Y AG++S+ C YG+Y R + DW++ETM +N
Sbjct: 300 FAIHDMEEDT--WYAAGILSFDKSCAVAEYGVYVRATDLKDWVQETMAKN 347
>ref|NP_079859.2| chymotrypsinogen B precursor [Mus musculus].
Length = 263
Score = 127 bits (320), Expect = 2e-29
Identities = 94/268 (35%), Positives = 127/268 (47%), Gaps = 11/268 (4%)
Frame = +3
Query: 336 CGIPS-EP-FKGMQRIFGGIITKIESFPWQVFFQNPRA----GGALIDEQWVLTAAHVVE 497
CG+P+ +P G+ RI G S+PWQV Q+ GG+LI E WV+TAAH
Sbjct: 19 CGVPAIQPVLTGLSRIVNGEDAIPGSWPWQVSLQDRTGFHFCGGSLISENWVVTAAHC-- 76
Query: 498 GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPV 677
G + + V S N Q+L +VF +P + NDI L++L P
Sbjct: 77 GVKTTDVVVAGEFDQGSDEENVQVLKIAQVFKNPKFNSFTVR------NDITLLKLATPA 130
Query: 678 KMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRT--NTKDHVVKLRGAKLPVAPSDKCQE 851
+ TVS +CLP D+ G L +GWG+T N KL+ A LP+ KC+E
Sbjct: 131 QFSETVSAVCLPTVDDDFP--AGTLCATTGWGKTKYNALKTPDKLQQAALPIVSEAKCKE 188
Query: 852 IKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP 1031
G+ TD MICAG GV SC GDSGG Q T +AG+VSWG
Sbjct: 189 SWGSK---------ITDVMICAGASGVSSCMGDSGGPLVCQKDGVWT----LAGIVSWGS 235
Query: 1032 ---QCGTYGIYTRVKNYIDWIRETMQQN 1106
T +Y RV + W++E ++ N
Sbjct: 236 GFCSTSTPAVYARVTALMPWVQEILEAN 263
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,919,046
Number of extensions: 1506539
Number of successful extensions: 5243
Number of sequences better than 1.0e-05: 174
Number of HSP's gapped: 4689
Number of HSP's successfully gapped: 203
Length of query: 480
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 375
Effective length of database: 12,463,779
Effective search space: 4673917125
Effective search space used: 4673917125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007372
(1441 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005349.1| complement C1s subcomponent precursor [Sus s... 786 0.0
Alignment gi|XP_003126565.2| PREDICTED: LOW QUALITY PROTEIN: complement C... 243 1e-64
Alignment gi|NP_001157120.1| mannan-binding lectin serine protease 2 [Sus... 233 2e-61
Alignment gi|NP_001171876.1| mannan-binding lectin serine protease 1 [Sus... 228 5e-60
Alignment gi|NP_999165.1| haptoglobin precursor [Sus scrofa]. 174 8e-44
Alignment gi|XP_003361800.1| PREDICTED: haptoglobin-like [Sus scrofa]. 167 1e-41
Alignment gi|XP_003355796.1| PREDICTED: chymotrypsinogen B2-like isoform ... 136 3e-32
Alignment gi|XP_003355797.1| PREDICTED: chymotrypsinogen B2-like isoform ... 125 6e-29
Alignment gi|XP_003355798.1| PREDICTED: chymotrypsinogen 2-like [Sus scro... 124 1e-28
Alignment gi|NP_999356.1| tryptase precursor [Sus scrofa]. 121 8e-28
>ref|NP_001005349.1| complement C1s subcomponent precursor [Sus scrofa].
Length = 687
Score = 786 bits (2031), Expect = 0.0
Identities = 373/374 (99%), Positives = 373/374 (99%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP
Sbjct: 314 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 373
Query: 183 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 362
EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK
Sbjct: 374 EHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSEPFK 433
Query: 363 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 542
GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV
Sbjct: 434 GMQRIFGGIITKIESFPWQVFFQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGSSSVV 493
Query: 543 TSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTS 722
TSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTS
Sbjct: 494 TSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPICLPGTS 553
Query: 723 SDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTD 902
SDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKG NPRIGTSSFVFTD
Sbjct: 554 SDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEIKGTNPRIGTSSFVFTD 613
Query: 903 NMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYIDW 1082
NMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYIDW
Sbjct: 614 NMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGPQCGTYGIYTRVKNYIDW 673
Query: 1083 IRETMQQNSAPSVD 1124
IRETMQQNSAPSVD
Sbjct: 674 IRETMQQNSAPSVD 687
>ref|XP_003126565.2| PREDICTED: LOW QUALITY PROTEIN: complement C1r subcomponent [Sus
scrofa].
Length = 749
Score = 243 bits (621), Expect = 1e-64
Identities = 142/388 (36%), Positives = 208/388 (53%), Gaps = 21/388 (5%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGK---V 173
+D +C G+++++G SF + CQ +G W + RC+ DCG P+ +P+G +
Sbjct: 373 RDYFIASCKQGYQLMEGKQVLLSFTAVCQDDGTWHRAMPRCKIKDCGRPKSLPNGDFNYI 432
Query: 174 EDPEHTLFGSVTRYSCEQPYYYMETDG--------SEEYRCAGNGSWVNELLGAELPKCV 329
+ + +Y C +PYY M T G S Y C+ G W+NEL G +P+C+
Sbjct: 433 TTKGVNTYQARIQYYCREPYYKMHTGGGSTQPPLPSGAYTCSAQGVWMNELEGETMPRCL 492
Query: 330 PVCGIPSEPFKGMQRIFGGIITKIESFPWQVFFQ-NPRAGGALIDEQWVLTAAHVVEGNR 506
PVCG P P + QRI GG K SFPWQ F GGAL+ ++W+LTAAH ++
Sbjct: 493 PVCGKPVNPVEEKQRIIGGRKAKPGSFPWQAFTNIYGHGGGALLGDRWILTAAHTLKPKE 552
Query: 507 EPVMYVGSSSVVTSHLANGQML-----TAERVFIHPGWEEQDASERKNFDNDIALVRLKD 671
S V H+ ++ R IHP + ++D+ +F+ DIAL+ L++
Sbjct: 553 YDEQNNASVDVFLGHVNVDEITKLGNHPVRRFIIHPDYRQEDS---HSFEGDIALLELEN 609
Query: 672 PVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTK-DHVVKLRGAKLPVAPSDKCQ 848
V +GP + PICLP + YD G +G +SG+G T K H LR LP+A + CQ
Sbjct: 610 SVTLGPDILPICLPDNDTFYD--WGFMGYVSGFGITERKLSH--DLRYVHLPIAKREMCQ 665
Query: 849 EIKGANPRIGTSSFVFTDNMICAGGRGV--DSCNGDSGGAFAMQVPNEETPKFYVAGLVS 1022
R + VF+ NM CAG + DSC GDSGG FAM+ +E+ ++ G+VS
Sbjct: 666 SWLQKKNR----NDVFSRNMFCAGSPTLKQDSCQGDSGGVFAMK--DEKNDQWVAMGIVS 719
Query: 1023 WGPQCGT-YGIYTRVKNYIDWIRETMQQ 1103
WG CG YG YT+V NY+DWI++ M++
Sbjct: 720 WGIGCGEGYGFYTKVLNYVDWIKKEMEK 747
>ref|NP_001157120.1| mannan-binding lectin serine protease 2 [Sus scrofa].
Length = 685
Score = 233 bits (594), Expect = 2e-61
Identities = 141/374 (37%), Positives = 193/374 (51%), Gaps = 13/374 (3%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVE-- 176
KD + C G+E++QG + SF + CQ +G W C VDCG P+ + +G+VE
Sbjct: 321 KDRFFVFCETGYELLQGDLPLKSFTTVCQKDGSWDQPMPECSIVDCGPPDDLQNGQVEYI 380
Query: 177 -DPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
PE T + + RY C +Y M D + Y C +G W+ LP C PVCG+ +
Sbjct: 381 TAPEVTTYKAEMRYRCNA-FYTMRIDHGK-YVCEADGFWMRSKGDKSLPVCEPVCGLSTR 438
Query: 354 PFKGMQRIFGGIITKIESFPWQVF-FQNPRAGGALIDEQWVLTAAHVVEGNREPVMYVGS 530
+G RI+GG K+ FPWQV F A GAL+ + W+LTAAH V +E +
Sbjct: 439 TTEG--RIYGGQKAKLGDFPWQVLLFGETMAAGALVSDDWILTAAHAVYKQKEDASSLDI 496
Query: 531 SSVVTSHLA-NGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPVKMGPTVSPIC 707
V L+ + AE +FIH G+ + +DNDIAL++LKD V + V PIC
Sbjct: 497 RLGVLKRLSPHYTQAWAEAIFIHEGY-----THNAGYDNDIALIKLKDKVVINSNVMPIC 551
Query: 708 LPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKCQEI--KGANPRIGT 881
LP ++ D+G SGWG T L A LP+ KC K ++P +
Sbjct: 552 LPRKEAESFMRTNDIGTASGWGLTQRGFLARNLMSADLPIVDHQKCVAAFEKKSDPGVRV 611
Query: 882 SSFVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP----QCGT 1043
TDNM+CAG G DSC GDSGGA ++ET K++V G+VSW + G
Sbjct: 612 -----TDNMLCAGLESGGKDSCKGDSGGALVFL--DDETQKWFVGGIVSWSSTNCGEAGQ 664
Query: 1044 YGIYTRVKNYIDWI 1085
YG+YT+V NYI WI
Sbjct: 665 YGVYTKVINYIPWI 678
>ref|NP_001171876.1| mannan-binding lectin serine protease 1 [Sus scrofa].
Length = 728
Score = 228 bits (582), Expect = 5e-60
Identities = 148/409 (36%), Positives = 214/409 (52%), Gaps = 44/409 (10%)
Frame = +3
Query: 3 KDVVKITCLDGFEVVQGTVGSTSFYSTCQSNGKWSNSKLRCQPVDCGSPEPIPHGKVEDP 182
KD V I+C G++V++ V F C +G WSN C+ DCG+P + +G V
Sbjct: 322 KDQVLISCDTGYKVLKDNVEMDVFQIECLKDGTWSNKIPTCKIADCGTPAKLENGLVTFS 381
Query: 183 EH---TLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAELPKCVPVCGIPSE 353
T + S YSC+QPYY M + Y C+ G W+NE+LG P C+PVCG PS
Sbjct: 382 TRNNLTTYKSEIIYSCQQPYYKMLHSTTGVYTCSAQGVWMNEVLGKSQPTCLPVCGQPSR 441
Query: 354 PFKGM-QRIFGGIITKIESFPWQVFF--------QNPR--AGGALIDEQWVLTAAHVVEG 500
+ +RI GG + FPWQ N + GAL+ E W+LTAAHV+
Sbjct: 442 SLPNLVKRIIGGRNAEPGLFPWQALIVVEDTSRVPNDKWFGSGALLSESWILTAAHVLRS 501
Query: 501 NRE-----PV------MYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDND 647
R PV +Y+G V A +A RV +HP ++ Q N+++D
Sbjct: 502 QRRDNTVTPVSKEHVTVYLGLHDVRDKSGAVNS--SAARVVLHPDFDIQ------NYNHD 553
Query: 648 IALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTN---TKDHVVK----- 803
IALV+L++PV +GP V P+CLP + P+ LGL++GWG +N T D ++
Sbjct: 554 IALVQLQEPVPLGPHVMPVCLPRPEPE-GPAPHMLGLVAGWGISNPNVTVDEIISSGTRT 612
Query: 804 ----LRGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAF 965
L+ KLPV P +C+ + + ++ T+NM CAG G D+C GDSGGAF
Sbjct: 613 LSDVLQYVKLPVVPHAECK----TSYESRSGNYSVTENMFCAGYYEGGKDTCLGDSGGAF 668
Query: 966 AMQVPNEETPKFYVAGLVSWG--PQCGT---YGIYTRVKNYIDWIRETM 1097
+ ++ + ++ GLVSWG +CG+ YG+YT+V NY+DW+ E M
Sbjct: 669 V--ILDDLSQRWVAQGLVSWGGPEECGSKQVYGVYTKVSNYVDWVWEQM 715
>ref|NP_999165.1| haptoglobin precursor [Sus scrofa].
Length = 347
Score = 174 bits (442), Expect = 8e-44
Identities = 116/340 (34%), Positives = 165/340 (48%), Gaps = 17/340 (5%)
Frame = +3
Query: 138 CGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAEL 317
C P IP G VE + RY C Q YY + T G Y N W N++ G +L
Sbjct: 33 CPKPPEIPKGYVEH--------MVRYHC-QTYYKLRTAGDGVYTLDSNKQWTNKVTGEKL 83
Query: 318 PKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALIDEQWVLTAAH 488
P+C VCG P P +QRI GG + SFPWQ + N +G LI+EQW+LT A
Sbjct: 84 PECEAVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAK 143
Query: 489 VVE-GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRL 665
+ G++ + + ++ Q + E+V HP N DI L++L
Sbjct: 144 NLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIFHP----------DNSTVDIGLIKL 193
Query: 666 KDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKC 845
K V + V PICLP S DY +VG +G +SGWGR + L+ LPVA +KC
Sbjct: 194 KQKVPVNERVMPICLP--SKDY-VNVGLVGYVSGWGRNANLNFTEHLKYVMLPVADQEKC 250
Query: 846 ---------QEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEET 992
E K +G + ++ CAG D+C GD+G AFA+ +++T
Sbjct: 251 VQYYEGSTVPEKKTPKSPVGVQP-ILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDT 309
Query: 993 PKFYVAGLVSWGPQCGT--YGIYTRVKNYIDWIRETMQQN 1106
+Y AG++S+ C T YG+Y RV + +DWI+ T+ N
Sbjct: 310 --WYAAGILSFDKSCRTAEYGVYVRVTSILDWIQTTIADN 347
>ref|XP_003361800.1| PREDICTED: haptoglobin-like [Sus scrofa].
Length = 386
Score = 167 bits (424), Expect = 1e-41
Identities = 114/340 (33%), Positives = 162/340 (47%), Gaps = 17/340 (5%)
Frame = +3
Query: 138 CGSPEPIPHGKVEDPEHTLFGSVTRYSCEQPYYYMETDGSEEYRCAGNGSWVNELLGAEL 317
C P IP G VE + RY C Q YY + T G Y N W N++ G +L
Sbjct: 72 CPKPPEIPKGYVEH--------MVRYHC-QTYYKLRTAGDGVYTLDSNKQWTNKVTGEKL 122
Query: 318 PKCVPVCGIPSEPFKGMQRIFGGIITKIESFPWQ---VFFQNPRAGGALIDEQWVLTAAH 488
P+C VCG P P +QRI GG + SFPWQ + N +G LI+EQW+LT A
Sbjct: 123 PECEAVCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAK 182
Query: 489 VVE-GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRL 665
+ G++ + + ++ Q + E+V HP N DI L++L
Sbjct: 183 NLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIFHP----------DNSTVDIGLIKL 232
Query: 666 KDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHVVKLRGAKLPVAPSDKC 845
K V + V PICLP S DY +VG +G +SGWGR + L+ LPVA +KC
Sbjct: 233 KQKVPVNERVMPICLP--SKDY-VNVGLVGYVSGWGRNANLNFTEHLKYVMLPVADQEKC 289
Query: 846 ---------QEIKGANPRIGTSSFVFTDNMICAG--GRGVDSCNGDSGGAFAMQVPNEET 992
E K +G + ++ CAG D+C GD+G AFA+ +++T
Sbjct: 290 VQYYEGSTVPEKKTPKSPVGVQP-ILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDT 348
Query: 993 PKFYVAGLVS--WGPQCGTYGIYTRVKNYIDWIRETMQQN 1106
+Y AG++S YG+Y RV + +DWI+ T+ N
Sbjct: 349 --WYAAGILSXXXXXXXXEYGVYVRVTSILDWIQTTIADN 386
>ref|XP_003355796.1| PREDICTED: chymotrypsinogen B2-like isoform 1 [Sus scrofa].
Length = 263
Score = 136 bits (342), Expect = 3e-32
Identities = 97/268 (36%), Positives = 132/268 (49%), Gaps = 11/268 (4%)
Frame = +3
Query: 336 CGIPS-EPF-KGMQRIFGGIITKIESFPWQVFFQNPRA----GGALIDEQWVLTAAHVVE 497
CG+P+ +P G+ RI G S+PWQV Q GG+LI E WV+TAAH
Sbjct: 19 CGVPAIDPMLSGLSRIVNGEEAVPGSWPWQVSLQTSSGFHFCGGSLISEAWVVTAAHCEV 78
Query: 498 GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPV 677
R+ + V S ++S Q+L V HP W NDIAL++L P
Sbjct: 79 --RKSHLVVAGVSDLSSDEEAVQVLRIAEVVEHPLWNLHALR------NDIALLKLATPA 130
Query: 678 KMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRT--NTKDHVVKLRGAKLPVAPSDKCQE 851
++ VSP+CLP T++ + G L +GWG+T N KL+ A LP+ S C+
Sbjct: 131 RLSGAVSPVCLPSTNTSFP--TGSLCATTGWGKTRHNALKTPDKLQQAALPIVSSTVCKS 188
Query: 852 IKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVSWGP 1031
G+ TD MICAG GV SC GDSGG Q T +AG+VSWG
Sbjct: 189 YWGSK---------VTDVMICAGASGVSSCMGDSGGPLVCQKDGAWT----LAGIVSWGS 235
Query: 1032 -QCGTY--GIYTRVKNYIDWIRETMQQN 1106
+C + G+Y RV ++ WI E ++ N
Sbjct: 236 GRCLPFSPGVYARVTKFVPWILEVLKAN 263
>ref|XP_003355797.1| PREDICTED: chymotrypsinogen B2-like isoform 2 [Sus scrofa].
Length = 263
Score = 125 bits (314), Expect = 6e-29
Identities = 93/271 (34%), Positives = 126/271 (46%), Gaps = 14/271 (5%)
Frame = +3
Query: 336 CGIPSEP--FKGMQRIFGGIITKIESFPWQVFFQNPRA----GGALIDEQWVLTAAHVVE 497
CG+P+ P G+ RI G S+PWQV Q+ GG+LI E WV+TAAH
Sbjct: 19 CGVPAIPPVLSGLSRIVNGENAVPGSWPWQVSLQDGTGFHFCGGSLISEDWVVTAAHC-- 76
Query: 498 GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPV 677
G + V S + Q+L +VF +P + NDI L++L P
Sbjct: 77 GVTTSDVVVAGEYDQASDAEDIQVLKIAKVFKNPNFSLLTVR------NDITLLKLATPA 130
Query: 678 KMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTN-----TKDHVVKLRGAKLPVAPSDK 842
+ TVS +CLP S D+ G L +GWG+T T D KL+ A LP+ S
Sbjct: 131 RFSRTVSAVCLPSASDDFP--AGTLCATTGWGKTKYTALKTPD---KLQQAALPIVSSTV 185
Query: 843 CQEIKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVS 1022
C+ G+ TD MICAG GV SC GDSGG Q + + + G+VS
Sbjct: 186 CKSYWGSK---------VTDVMICAGASGVSSCMGDSGGPLVCQ----KNGAWTLVGIVS 232
Query: 1023 WGPQ-CGTY--GIYTRVKNYIDWIRETMQQN 1106
WG C T +Y RV I W+++ + N
Sbjct: 233 WGSSTCSTTTPAVYARVTALIPWVQQILANN 263
>ref|XP_003355798.1| PREDICTED: chymotrypsinogen 2-like [Sus scrofa].
Length = 263
Score = 124 bits (312), Expect = 1e-28
Identities = 93/271 (34%), Positives = 127/271 (46%), Gaps = 14/271 (5%)
Frame = +3
Query: 336 CGIPSEP--FKGMQRIFGGIITKIESFPWQVFFQNPRA----GGALIDEQWVLTAAHVVE 497
CG+P+ P G+ RI G S+PWQV Q+ GG+LI E WV+TAAH
Sbjct: 19 CGVPAIPPVLSGLSRIVNGEDAVPGSWPWQVSLQDSTGFHFCGGSLISEDWVVTAAHC-- 76
Query: 498 GNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKNFDNDIALVRLKDPV 677
G + V S + Q++ +VF +P + S NDI L++L P
Sbjct: 77 GVTTSDVVVAGEFDQGSDAESIQVINIAKVFKNPRYSWFINS------NDITLLKLATPA 130
Query: 678 KMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRT-----NTKDHVVKLRGAKLPVAPSDK 842
+ TVS +CLP S D+ G L + +GWG T NT D +L+ A LP+ +
Sbjct: 131 RFSETVSAVCLPSASDDFP--AGTLCVTTGWGLTKYTDANTPD---RLQQAALPLLSNAA 185
Query: 843 CQEIKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNEETPKFYVAGLVS 1022
C+ G F T +MICAG GV SC GDSGG Q T + G+VS
Sbjct: 186 CRRYWG---------FRITKSMICAGASGVSSCMGDSGGPLVCQKDGVWT----LVGIVS 232
Query: 1023 WGPQ-CGTY--GIYTRVKNYIDWIRETMQQN 1106
WG C T G+Y RV + W+ + + N
Sbjct: 233 WGSSTCSTSSPGVYARVTQLVSWVHQIVAAN 263
>ref|NP_999356.1| tryptase precursor [Sus scrofa].
Length = 275
Score = 121 bits (304), Expect = 8e-28
Identities = 85/284 (29%), Positives = 130/284 (45%), Gaps = 14/284 (4%)
Frame = +3
Query: 300 LLGAELPKCVPVCGIPSEPFKGMQR--IFGGIITKIESFPWQVFFQ------NPRAGGAL 455
LL LP V + P + ++R I GG +PWQV + GG+L
Sbjct: 4 LLVLALPLLVSLVHTAPAPGQALERAGIVGGKEAPGHKWPWQVSLRCLDQYWKHFCGGSL 63
Query: 456 IDEQWVLTAAHVVEGNREPVMYVGSSSVVTSHLANGQMLTAERVFIHPGWEEQDASERKN 635
I QWVLTAAH + +Y+ ++L R+ +HP + ++
Sbjct: 64 IHPQWVLTAAHCFGPEKADPLYIRVQLGEQHLYYQDRLLLVSRIIVHPNYYDEVNGA--- 120
Query: 636 FDNDIALVRLKDPVKMGPTVSPICLPGTSSDYDPSVGDLGLISGWGRTNTKDHV---VKL 806
DIAL+ L+DPV + V P+ LP S + G ++GWG ++ + L
Sbjct: 121 ---DIALLELEDPVNLSSHVQPVTLPPASETFPK--GTRCWVTGWGDVHSGWPLPPPYPL 175
Query: 807 RGAKLPVAPSDKCQEIKGANPRIGTSSFVFTDNMICAGGRGVDSCNGDSGGAFAMQVPNE 986
+ ++P+ + +C G + + D+M+CAG G DSC GDSGG +V
Sbjct: 176 KQVRVPIVENSECDMQYHLGLSTGDNIPIVRDDMLCAGSEGHDSCQGDSGGPLVCRV--- 232
Query: 987 ETPKFYVAGLVSWGPQC---GTYGIYTRVKNYIDWIRETMQQNS 1109
+ AG+VSWG C GIYTRV +Y+DWI + + + S
Sbjct: 233 -NGTWLQAGVVSWGEGCALPNRPGIYTRVTHYLDWIHQCIPRES 275
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,235,113
Number of extensions: 1133322
Number of successful extensions: 3970
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 3634
Number of HSP's successfully gapped: 127
Length of query: 480
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 377
Effective length of database: 8,779,541
Effective search space: 3309886957
Effective search space used: 3309886957
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007372
(1441 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
***** No hits found ******
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,931,317
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 0
Length of query: 1441
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1420
Effective length of database: 2,808,413,156
Effective search space: 3987946681520
Effective search space used: 3987946681520
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)