Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007378
(1766 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001178049.1| ubiquitin related modifier 1 homolog [Bos ta... 198 1e-50
Alignment gi|NP_001069197.1| ubiquitin-related modifier 1 homolog [Bos ta... 198 1e-50
Alignment gi|XP_002685134.1| PREDICTED: potassium voltage-gated channel, ... 60 8e-09
>ref|NP_001178049.1| ubiquitin related modifier 1 homolog [Bos taurus].
Length = 101
Score = 198 bits (504), Expect = 1e-50
Identities = 94/99 (94%), Positives = 99/99 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQ+EPWD+R+LLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVL+NDADWELLGELDYQLQDQDS+LFISTLH
Sbjct: 61 DSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLH 99
>ref|NP_001069197.1| ubiquitin-related modifier 1 homolog [Bos taurus].
Length = 101
Score = 198 bits (504), Expect = 1e-50
Identities = 94/99 (94%), Positives = 99/99 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQ+EPWD+R+LLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVL+NDADWELLGELDYQLQDQDS+LFISTLH
Sbjct: 61 DSVRPGILVLVNDADWELLGELDYQLQDQDSVLFISTLH 99
>ref|XP_002685134.1| PREDICTED: potassium voltage-gated channel, subfamily H, member
8-like [Bos taurus].
Length = 990
Score = 59.7 bits (143), Expect = 8e-09
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +3
Query: 228 ILVLINDADWELLGELDYQLQDQDSILFISTL 323
+LV+INDADWELLGELDYQLQDQ+SILFIS L
Sbjct: 1 MLVVINDADWELLGELDYQLQDQNSILFISML 32
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 66,747,279
Number of extensions: 1840611
Number of successful extensions: 7370
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7362
Number of HSP's successfully gapped: 3
Length of query: 588
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 480
Effective length of database: 14,107,870
Effective search space: 6771777600
Effective search space used: 6771777600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007378
(1766 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850726.1| PREDICTED: similar to CG33276-PA isoform 1 [Can... 199 9e-51
Alignment gi|XP_862160.1| PREDICTED: similar to CG33276-PA isoform 2 [Can... 127 3e-29
>ref|XP_850726.1| PREDICTED: similar to CG33276-PA isoform 1 [Canis familiaris].
Length = 101
Score = 199 bits (505), Expect = 9e-51
Identities = 95/99 (95%), Positives = 99/99 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQ+EPWD+R+LLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVL+NDADWELLGELDYQLQDQDSILFISTLH
Sbjct: 61 DSVRPGILVLVNDADWELLGELDYQLQDQDSILFISTLH 99
>ref|XP_862160.1| PREDICTED: similar to CG33276-PA isoform 2 [Canis familiaris].
Length = 63
Score = 127 bits (320), Expect = 3e-29
Identities = 60/63 (95%), Positives = 63/63 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQ+EPWD+R+LLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQEEPWDIRSLLVWIKKNLLKERPELFIQG 60
Query: 210 DSV 218
DSV
Sbjct: 61 DSV 63
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 69,791,850
Number of extensions: 1906660
Number of successful extensions: 7622
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7615
Number of HSP's successfully gapped: 2
Length of query: 588
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 480
Effective length of database: 15,274,216
Effective search space: 7331623680
Effective search space used: 7331623680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007378
(1766 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_112176.1| ubiquitin-related modifier 1 homolog isoform a ... 198 1e-50
Alignment gi|NP_001129419.1| ubiquitin-related modifier 1 homolog isoform... 159 6e-39
>ref|NP_112176.1| ubiquitin-related modifier 1 homolog isoform a [Homo sapiens].
Length = 101
Score = 198 bits (504), Expect = 1e-50
Identities = 93/99 (93%), Positives = 99/99 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDG+KKH+VTLPGQ+EPWD+RNLL+WIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVLINDADWELLGELDYQLQDQDS+LFISTLH
Sbjct: 61 DSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLH 99
>ref|NP_001129419.1| ubiquitin-related modifier 1 homolog isoform b [Homo sapiens].
Length = 146
Score = 159 bits (403), Expect = 6e-39
Identities = 74/79 (93%), Positives = 79/79 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDG+KKH+VTLPGQ+EPWD+RNLL+WIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGIKKHRVTLPGQEEPWDIRNLLIWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELL 266
DSVRPGILVLINDADWELL
Sbjct: 61 DSVRPGILVLINDADWELL 79
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 67,984,097
Number of extensions: 1843211
Number of successful extensions: 7206
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7188
Number of HSP's successfully gapped: 2
Length of query: 588
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 480
Effective length of database: 14,737,052
Effective search space: 7073784960
Effective search space used: 7073784960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007378
(1766 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080891.1| ubiquitin-related modifier 1 homolog [Mus muscu... 196 6e-50
>ref|NP_080891.1| ubiquitin-related modifier 1 homolog [Mus musculus].
Length = 101
Score = 196 bits (497), Expect = 6e-50
Identities = 94/99 (94%), Positives = 97/99 (97%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPL V+VEFGGGAELLFDGVKKHQV LPGQ+EPWD+RNLLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH
Sbjct: 61 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 99
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,014,009
Number of extensions: 1521661
Number of successful extensions: 5912
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5905
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 481
Effective length of database: 12,403,707
Effective search space: 5966183067
Effective search space used: 5966183067
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007378
(1766 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001928676.1| PREDICTED: ubiquitin-related modifier 1 homo... 203 3e-52
Alignment gi|NP_001230416.1| ubiquitin-related modifier 1 homolog [Sus sc... 203 3e-52
>ref|XP_001928676.1| PREDICTED: ubiquitin-related modifier 1 homolog [Sus scrofa].
Length = 101
Score = 203 bits (516), Expect = 3e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH
Sbjct: 61 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 99
>ref|NP_001230416.1| ubiquitin-related modifier 1 homolog [Sus scrofa].
Length = 101
Score = 203 bits (516), Expect = 3e-52
Identities = 99/99 (100%), Positives = 99/99 (100%)
Frame = +3
Query: 30 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 209
MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG
Sbjct: 1 MAAPLSVEVEFGGGAELLFDGVKKHQVTLPGQDEPWDVRNLLVWIKKNLLKERPELFIQG 60
Query: 210 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 326
DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH
Sbjct: 61 DSVRPGILVLINDADWELLGELDYQLQDQDSILFISTLH 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,241,718
Number of extensions: 1194883
Number of successful extensions: 4863
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4856
Number of HSP's successfully gapped: 2
Length of query: 588
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 484
Effective length of database: 8,754,644
Effective search space: 4237247696
Effective search space used: 4237247696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007378
(1766 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 2161 0.0
gb|GL893334.2| Sus scrofa unplaced genomic scaffold ChrUScaf1219 145 1e-31
>Sscrofa_Chr01
|| Length = 315321322
Score = 2161 bits (1090), Expect = 0.0
Identities = 1143/1164 (98%), Gaps = 2/1164 (0%)
Strand = Plus / Plus
Query: 583 aggtgccgctgcggtgggggaggtgcccctcagtgtgtcaggagtnnnnnnntctgtgca 642
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 302804252 aggtgccgctgcggtgggggaggtgcccctcagtgtgtcaggagtgggggggtctgtgca 302804311
Query: 643 gccaggtaataacccagctgctttctgctcctcttcctcctcgtgtctcagcccatacac 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804312 gccaggtaataacccagctgctttctgctcctcttcctcctcgtgtctcagcccatacac 302804371
Query: 703 ccagtcaccactcgcgggcagcagggccctgctgaggaagatgaatggacctgaatagct 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804372 ccagtcaccactcgcgggcagcagggccctgctgaggaagatgaatggacctgaatagct 302804431
Query: 763 gatgacaggccctcccttctcagagattggagcagtctccgcctcagtttccccatctgg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804432 gatgacaggccctcccttctcagagattggagcagtctccgcctcagtttccccatctgg 302804491
Query: 823 agggcagaggactctgcctgtcccctactgatatcattatggaaccccagctggggtccc 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804492 agggcagaggactctgcctgtcccctactgatatcattatggaaccccagctggggtccc 302804551
Query: 883 ctattcagtgctgannnnnnnnnnaacagcagctgctcctccaaccacacccctcctcct 942
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 302804552 ctattcagtgctgaccccccccc-aacagcagctgctcctccaaccacacccctcctcct 302804610
Query: 943 gctcccccagccacagcccttgaccctggccatcctcccccaacacaggccaccagatgg 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804611 gctcccccagccacagcccttgaccctggccatcctcccccaacacaggccaccagatgg 302804670
Query: 1003 gctcctgagacgccccctccccgcaaaaggcctcctccatgcagctcattcctctggggc 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804671 gctcctgagacgccccctccccgcaaaaggcctcctccatgcagctcattcctctggggc 302804730
Query: 1063 tggagaggaggagggtggaggtaaaccttggacttgcagatagactcctgctgtgcaggg 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804731 tggagaggaggagggtggaggtaaaccttggacttgcagatagactcctgctgtgcaggg 302804790
Query: 1123 gggtgggttccctgtgccttagtttcctcctcaaccacaactgaatttttatagtgtttg 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804791 gggtgggttccctgtgccttagtttcctcctcaaccacaactgaatttttatagtgtttg 302804850
Query: 1183 agaagtggggagatccttggtggcacaaatgtagacttgatctcctctcccacctcctgc 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804851 agaagtggggagatccttggtggcacaaatgtagacttgatctcctctcccacctcctgc 302804910
Query: 1243 aggaagcaggatcggggcaggcagcacctggtaggcaggatggctcacccctcctccctc 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804911 aggaagcaggatcggggcaggcagcacctggtaggcaggatggctcacccctcctccctc 302804970
Query: 1303 catcccttctggaagtcctgggcctcagggcctgcaacagctggccttgggcaaataaaa 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804971 catcccttctggaagtcctgggcctcagggcctgcaacagctggccttgggcaaataaaa 302805030
Query: 1363 gactaggttgtttactggacttgcctgaaacttcatcctcagaaacgggtggcaccccac 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302805031 gactaggttgtttactggacttgcctgaaacttcatcctcagaaacgggtggcaccccac 302805090
Query: 1423 gttccgcccagccgccgtctctggtccaccctctctgtcctcagctaagcctttcagcac 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302805091 gttccgcccagccgccgtctctggtccaccctctctgtcctcagctaagcctttcagcac 302805150
Query: 1483 tgcccttcatccgaaaagggagcagggcttgactcagactgtcatagggggtgatctgat 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302805151 tgcccttcatccgaaaagggagcagggcttgactcagactgtcatagggggtgatctgat 302805210
Query: 1543 agggccatctggagaaggggtggcagagccagtctgtgctgaccagtctaggtcccaggt 1602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302805211 agggccatctggagaaggggtggcagagccagtctgtgctgaccagtctaggtcccaggt 302805270
Query: 1603 cacgtccctgcccgtctgtccaaggccaagctttgtcccgccagctgcagctagtggccc 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302805271 cacgtccctgcccgtctgtccaaggccaagctttgtcccgccagctgcagctagtggccc 302805330
Query: 1663 cagaacggaggtggcatagataagagtgctgagccccacttcccatgacctgnnag-aaa 1721
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 302805331 cagaacggaggtggcatagataagagtgctgagccccacttcccatgacctggaggaaaa 302805390
Query: 1722 gctttgtttgctggagggagacct 1745
||||||||||||||||||||||||
Sbjct: 302805391 gctttgtttgctggagggagacct 302805414
Score = 488 bits (246), Expect = e-135
Identities = 246/246 (100%)
Strand = Plus / Plus
Query: 266 gggggagctggactaccagcttcaggaccaggacagcatcctcttcatatccacgctgca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302803935 gggggagctggactaccagcttcaggaccaggacagcatcctcttcatatccacgctgca 302803994
Query: 326 cggcggctaagggccctcctctgtgcctgagccgcctcggggtggcgagaccatcagccg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302803995 cggcggctaagggccctcctctgtgcctgagccgcctcggggtggcgagaccatcagccg 302804054
Query: 386 tccccttgggccctgcttccagatcttcctgtcccccttggcggttttcttccctagtct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804055 tccccttgggccctgcttccagatcttcctgtcccccttggcggttttcttccctagtct 302804114
Query: 446 gtcccctgcgctccctccaggcagggaaaagaggccaggtgctaaaaatgagcctcctca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302804115 gtcccctgcgctccctccaggcagggaaaagaggccaggtgctaaaaatgagcctcctca 302804174
Query: 506 ggcacg 511
||||||
Sbjct: 302804175 ggcacg 302804180
Score = 165 bits (83), Expect = 1e-37
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 136 gggacgtccggaacctccttgtctggatcaagaagaacttgctcaaagagcggccagagt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302801523 gggacgtccggaacctccttgtctggatcaagaagaacttgctcaaagagcggccagagt 302801582
Query: 196 tgttcatccagggagacagcgtg 218
|||||||||||||||||||||||
Sbjct: 302801583 tgttcatccagggagacagcgtg 302801605
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 64 gaggcggtgcggagctcctgtttgacggcgtgaagaaacatcaggtcaccttgcccggac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302792727 gaggcggtgcggagctcctgtttgacggcgtgaagaaacatcaggtcaccttgcccggac 302792786
Query: 124 aggacgaaccctg 136
|||||||||||||
Sbjct: 302792787 aggacgaaccctg 302792799
Score = 119 bits (60), Expect = 5e-24
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 1 gagtttcctgtgagctcggtttcctcaatatggcggcgcccttgtcagtggaggtggagt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302788258 gagtttcctgtgagctcggcttcctcaatatggcggcgcccttgtcagtggaggtggagt 302788317
Query: 61 tcgg 64
||||
Sbjct: 302788318 tcgg 302788321
Score = 99.6 bits (50), Expect = 5e-18
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 218 gcggccagggattctggtgctgattaacgatgccgactgggaactgctgg 267
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302803521 gcggccagggattctggtgctgattaacgatgccgactgggaactgctgg 302803570
>gb|GL893334.2| Sus scrofa unplaced genomic scaffold ChrUScaf1219
Length = 126167
Score = 145 bits (73), Expect = 1e-31
Identities = 73/73 (100%)
Strand = Plus / Minus
Query: 64 gaggcggtgcggagctcctgtttgacggcgtgaagaaacatcaggtcaccttgcccggac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3913 gaggcggtgcggagctcctgtttgacggcgtgaagaaacatcaggtcaccttgcccggac 3854
Query: 124 aggacgaaccctg 136
|||||||||||||
Sbjct: 3853 aggacgaaccctg 3841
Score = 119 bits (60), Expect = 5e-24
Identities = 63/64 (98%)
Strand = Plus / Minus
Query: 1 gagtttcctgtgagctcggtttcctcaatatggcggcgcccttgtcagtggaggtggagt 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8707 gagtttcctgtgagctcggcttcctcaatatggcggcgcccttgtcagtggaggtggagt 8648
Query: 61 tcgg 64
||||
Sbjct: 8647 tcgg 8644
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 50,760,915
Number of extensions: 1555
Number of successful extensions: 1555
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 9
Length of query: 1766
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1744
Effective length of database: 2,808,408,574
Effective search space: 4897864553056
Effective search space used: 4897864553056
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)