Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007379
(1467 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri... 689 0.0
Alignment gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus]. 124 2e-28
Alignment gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei... 108 2e-23
Alignment gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor... 105 1e-22
Alignment gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 81 2e-15
Alignment gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per... 81 2e-15
Alignment gi|NP_001030492.1| enoyl-CoA hydratase domain-containing protei... 70 6e-12
Alignment gi|NP_001039861.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial... 70 6e-12
Alignment gi|NP_001039878.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochond... 66 9e-11
Alignment gi|NP_001157257.1| chromodomain Y-like protein 2 [Bos taurus]. 58 2e-08
>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
Length = 773
Score = 689 bits (1779), Expect(2) = 0.0
Identities = 356/427 (83%), Positives = 380/427 (88%)
Frame = +1
Query: 142 ASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLGQELHSEFIE 321
AS L YICR+FTRSSALLTRTHINYGV+GDVAVIRINSPNSKVNTL QELHSEF+E
Sbjct: 25 ASLVLPLLRYICRSFTRSSALLTRTHINYGVRGDVAVIRINSPNSKVNTLSQELHSEFME 84
Query: 322 VMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLEKST 501
VMNEVWSSSQIRSAVLIS+KPGCFIAGAD+NML++CTTSQEVTQISQEAQ+ FEKLEKST
Sbjct: 85 VMNEVWSSSQIRSAVLISTKPGCFIAGADLNMLNSCTTSQEVTQISQEAQKMFEKLEKST 144
Query: 502 KPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGV 681
KP+VAAING+CLGGGLELAISCQYRIATKDKKTVLG+PEVLLGILPGAG TQRLPKMVG
Sbjct: 145 KPVVAAINGSCLGGGLELAISCQYRIATKDKKTVLGSPEVLLGILPGAGATQRLPKMVGR 204
Query: 682 PAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYLEEVAVTFAKGLADK 861
PAAFDMMLTGRGIRAD+AKKMGLVDQLV RTIEYLEEVA+TFAKGLADK
Sbjct: 205 PAAFDMMLTGRGIRADRAKKMGLVDQLVEPLGPGVKPPEERTIEYLEEVAITFAKGLADK 264
Query: 862 KISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQ 1041
KI+PKRDKGLVEKLTSYA+SIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQ
Sbjct: 265 KITPKRDKGLVEKLTSYALSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQ 324
Query: 1042 GSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXX 1221
GS AGYLSESQ FGELAMTKESKALMGLYRGQT CKKNKFGAPQKEVK
Sbjct: 325 GSTAGYLSESQTFGELAMTKESKALMGLYRGQTQCKKNKFGAPQKEVKQLAVVGAGLMGA 384
Query: 1222 XXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSFERDSLFQHLTGQLD 1401
QVSVDK L+TILKD +LPALGRGQ+QVFKGLND V+KK LTSFERD++F +L GQLD
Sbjct: 385 GIAQVSVDKGLQTILKDTTLPALGRGQQQVFKGLNDKVKKKTLTSFERDAMFSNLIGQLD 444
Query: 1402 YQGLKKA 1422
Y+G +KA
Sbjct: 445 YRGFEKA 451
Score = 29.3 bits (64), Expect(2) = 0.0
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 1415 KRHMVIEAVFEELSLKH 1465
K MVIEAVFE+L+LKH
Sbjct: 450 KADMVIEAVFEDLNLKH 466
>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
Length = 723
Score = 124 bits (311), Expect = 2e-28
Identities = 96/310 (30%), Positives = 159/310 (51%), Gaps = 1/310 (0%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+A+IR+ +P VN + + E + + + ++ A++I G F AGADI
Sbjct: 11 LALIRLRNP--PVNAISTTVARGIKESLQKAITDDTVK-AIVICGADGIFCAGADIREFK 67
Query: 424 ACTTSQ-EVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKT 600
T ++ I E QR + KP+VAAI LGGGLELA+ C YRIA + +
Sbjct: 68 VHKTFDIQLGDIVDEIQR-------NKKPVVAAIQKLALGGGLELALGCHYRIAHAEAQ- 119
Query: 601 VLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXX 780
+G PEV LGILPGA GTQ LP++VGVPAA D++++GR I A++A K+G++D++V
Sbjct: 120 -VGFPEVTLGILPGARGTQLLPRLVGVPAALDLIISGRHISANEALKLGIIDKIVNSDPI 178
Query: 781 XXXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVE 960
E ++ FA+ ++D+ +R + S+P + I+ +
Sbjct: 179 --------------EESIKFAQRISDQSPESRRICNMP------VPSLPNM-DAIFSEAL 217
Query: 961 EKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQT 1140
+VRK+ G + +P + V+ ++ D G E + L + ++KAL ++ +
Sbjct: 218 LQVRKRYPG-WLSPEACVQAVQAAVQYPYDMGSKKEKELGLYLNTSGQAKALQYVFFAER 276
Query: 1141 LCKKNKFGAP 1170
+ NK+ P
Sbjct: 277 MA--NKWSTP 284
>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Bos taurus].
Length = 296
Score = 108 bits (269), Expect = 2e-23
Identities = 75/238 (31%), Positives = 118/238 (49%), Gaps = 5/238 (2%)
Frame = +1
Query: 229 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
G +A I +N P+++ N LG S+ +E + ++ Q+R + S G F AGAD
Sbjct: 41 GPNQGIAEILMNRPSAR-NALGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFCAGAD 99
Query: 409 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
+ + + EV Q + ++ P +AA++G LGGGLELA++C R+A
Sbjct: 100 LKEREQMSEA-EVGLFVQRLRGLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAAS 158
Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVX 768
V+G E G+LPGAGGTQRLP+ +GV A +++ TGR + +A+ +GLV+ V
Sbjct: 159 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVA 216
Query: 769 XXXXXXXXXXXRTI---EYLEE--VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
E L + +AV +K D+ I G+ + YA +IP
Sbjct: 217 QNEEGNAAYHRARALAQEILPQAPIAVRLSKVAIDRGIEVDIASGMAIEGICYAQNIP 274
>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
Length = 290
Score = 105 bits (261), Expect = 1e-22
Identities = 75/221 (33%), Positives = 113/221 (51%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
M A RA+ R L CP + R+F S+A G +V +I++N P +
Sbjct: 1 MAALRALLPRVRAPLRPWLFCP--VQRSFASSAAFEYIITAKKGRNSNVGLIQLNRPKA- 57
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
+N L L E + + + + A++++ F AGADI + + T S
Sbjct: 58 LNALCNGLIVELNQAL-QAFEEDPAVGAIVLTGGEKVFAAGADIKEMQSLTFQN---CYS 113
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
+++L + KP++AA+NG LGGG ELA+ C I +K G PE+L+G +P
Sbjct: 114 GGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEILIGTIP 171
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
GAGGTQRL + VG A +M+LTG I A AK+ GLV ++
Sbjct: 172 GAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 212
>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 81.3 bits (199), Expect = 2e-15
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Frame = +1
Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSA-- 426
+++N P + N + + E + N++ S R V+IS F +G D+ +++
Sbjct: 68 VQLNRPEKR-NAMNKAFWREMVVCFNKIAEDSDCR-VVVISGAGKMFSSGIDLMDMASDL 125
Query: 427 --------CTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
S + + Q TF +EK KP++AAI+G C+GGG++L +C R +
Sbjct: 126 LQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYS 185
Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
T+D + EV +G+ G QRLPK++G + ++ T R + AD+A + GLV +
Sbjct: 186 TRD--SFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSR 243
Query: 760 L 762
L
Sbjct: 244 L 244
>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
taurus].
Length = 326
Score = 81.3 bits (199), Expect = 2e-15
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Frame = +1
Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSA-- 426
+++N P + N + + E + N++ S R V+IS F +G D+ +++
Sbjct: 68 VQLNRPEKR-NAMNKAFWREMVVCFNKIAEDSDCR-VVVISGAGKMFSSGIDLMDMASDL 125
Query: 427 --------CTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
S + + Q TF +EK KP++AAI+G C+GGG++L +C R +
Sbjct: 126 LQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYS 185
Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
T+D + EV +G+ G QRLPK++G + ++ T R + AD+A + GLV +
Sbjct: 186 TRD--SFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSR 243
Query: 760 L 762
L
Sbjct: 244 L 244
>ref|NP_001030492.1| enoyl-CoA hydratase domain-containing protein 1 [Bos taurus].
Length = 306
Score = 69.7 bits (169), Expect = 6e-12
Identities = 42/174 (24%), Positives = 89/174 (51%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ ++ +N+P SK+N + + +E + E+ + ++ + ++ +K F +G+D+N +
Sbjct: 63 IGILTLNNP-SKMNAFSGVMMLQLLEKVIELENWTEGKGLIIRGAK-NTFSSGSDLNAVK 120
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A T ++ + Q T + + VA + G LGGG E+ +C +R+ T +
Sbjct: 121 ALGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGRALGGGAEVTTACDFRLMTTQSEIR 180
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
E +GI+P GG RL +++G A ++ + ++KA +G+VD ++
Sbjct: 181 FVHKE--MGIIPSWGGATRLVEIIGGRQALKVLSGALKLDSEKALNIGMVDDIL 232
>ref|NP_001039861.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial [Bos taurus].
Length = 303
Score = 69.7 bits (169), Expect = 6e-12
Identities = 50/174 (28%), Positives = 83/174 (47%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
VAV+++ +P VN L EL +E + + ++ + R +L S P F AG D+ +
Sbjct: 58 VAVMKLRNP--PVNALSLELLTELVISLEKLENDKTFRGVILTSDCPRVFCAGLDLTEIC 115
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ + + Q + + S+ +VAAING C GG +A+SC R+ + K
Sbjct: 116 GRNPAH-CAEYWKAMQELWLRTYLSSLVLVAAINGACPAGGCIIALSCDCRVLADNPKYR 174
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E LLGI+ +G A+ + G +A ++GLVDQ+V
Sbjct: 175 IGLNETLLGIIAPFWLKDTYVNTIGHRASEQALQLGSLFPPAEALQVGLVDQVV 228
>ref|NP_001039878.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Bos
taurus].
Length = 386
Score = 65.9 bits (159), Expect = 9e-11
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
Frame = +1
Query: 235 KGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADIN 414
KG VI +N P +NTL + + + + + ++ + F AG DI
Sbjct: 43 KGCAGVITLNRPRF-LNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIR 101
Query: 415 MLS-ACTTSQEVTQ-ISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
LS A T+Q++ Q + +E ++ KP +A I+G +GGG+ +++ Q+R+AT
Sbjct: 102 ALSEARNTNQKMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVAT- 160
Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+K+V PE +G+ P GG LP++ G F + LTG ++ G+ V
Sbjct: 161 -EKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYF-LALTGFRLKGRDVYTAGIATHFV 217
>ref|NP_001157257.1| chromodomain Y-like protein 2 [Bos taurus].
Length = 505
Score = 58.2 bits (139), Expect = 2e-08
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
Frame = +1
Query: 253 IRINSPNSKVNTLGQELHSEFIEVM-NEVWSSSQIRSAVLISSKPGCFIAGADINMLSAC 429
I ++S S N L E+ E + N S++ +L+S+ F +G D + L
Sbjct: 262 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKL---LLLSAVGSVFCSGLDYSYLIGR 318
Query: 430 TTS---QEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKT 600
+S +E T+I++ + + + KPIV AING LG G + C I +K
Sbjct: 319 LSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCD--IVWASEKA 376
Query: 601 VLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
P + + P + P+++GV A +M+ GR + A +A GLV Q+
Sbjct: 377 WFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQV 430
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,019,186
Number of extensions: 1435418
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4904
Number of HSP's successfully gapped: 15
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007379
(1467 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 701 0.0
Alignment gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 684 0.0
Alignment gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata... 125 1e-28
Alignment gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito... 102 1e-21
Alignment gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr... 101 2e-21
Alignment gi|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 94 4e-19
Alignment gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 80 7e-15
Alignment gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym... 75 2e-13
Alignment gi|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratas... 70 5e-12
Alignment gi|XP_547179.2| PREDICTED: similar to 3,2-trans-enoyl-CoA isome... 70 7e-12
>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 2
[Canis familiaris].
Length = 762
Score = 701 bits (1808), Expect(2) = 0.0
Identities = 359/441 (81%), Positives = 389/441 (88%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
MVASRAIGSL R TAS+ RCPGY+CRNFT SSAL +RTHIN+GVKGDVAV+R+NSPNSK
Sbjct: 1 MVASRAIGSLSRATASRMFRCPGYVCRNFTGSSALRSRTHINFGVKGDVAVVRLNSPNSK 60
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
VNTL +EL SEF+EVMNE+W+S QIRSAVLIS+KPGCFIAGADINML++C T +EVT+IS
Sbjct: 61 VNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADINMLASCKTHEEVTRIS 120
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
QE QR FEKLEKSTKPIVAAI+G CLGGGLELAISCQYRIATKD+KTVLGAPEVLLGILP
Sbjct: 121 QEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATKDRKTVLGAPEVLLGILP 180
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
GAGGTQRLPKMVG+PAAFDMMLTGR IRAD+AK+MGLVDQLV RTIEYL
Sbjct: 181 GAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPLGPGLKPPEERTIEYL 240
Query: 820 EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
EEVAV FAKGL+DKKIS KRDKGLVEKLTSYA+SIPFVRQQ+YKKVEEKVRKQTKGLYPA
Sbjct: 241 EEVAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIPFVRQQVYKKVEEKVRKQTKGLYPA 300
Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
PLKIIDVVKTGIEQG+DAGYLSESQKFGELAMTKESKALMGLY GQ LCKKNKFGAPQKE
Sbjct: 301 PLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKESKALMGLYHGQVLCKKNKFGAPQKE 360
Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
VK QVSVDK LKTILKDA+L LGRGQ+QVFKGLND V+KKALTSF
Sbjct: 361 VKDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQQQVFKGLNDKVKKKALTSF 420
Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
ERDS+F +LTGQLDYQG +KA
Sbjct: 421 ERDSIFSNLTGQLDYQGFEKA 441
Score = 30.4 bits (67), Expect(2) = 0.0
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 1415 KRHMVIEAVFEELSLKH 1465
K MVIEAVFE+LSLKH
Sbjct: 440 KADMVIEAVFEDLSLKH 456
>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 3
[Canis familiaris].
Length = 761
Score = 684 bits (1764), Expect(2) = 0.0
Identities = 353/441 (80%), Positives = 384/441 (87%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
MVASRAIGSL R TAS+ RCPGY+CRNFT SSAL +RTHIN+GVKGDVAV+R+NSPNSK
Sbjct: 1 MVASRAIGSLSRATASRMFRCPGYVCRNFTGSSALRSRTHINFGVKGDVAVVRLNSPNSK 60
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
VNTL +EL SEF+EVMNE+W+S QIRSAVLIS+KPGCFIAGADINML++C T +EVT+IS
Sbjct: 61 VNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADINMLASCKTHEEVTRIS 120
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
QE QR FEKLEKSTKPIVAAI+G CLGGGLELAISCQYRIATKD+KTVLGAPEVLLGILP
Sbjct: 121 QEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATKDRKTVLGAPEVLLGILP 180
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
GAGGTQRLPKMVG+PAAFDMMLTGR IRAD+AK+MGLVDQLV RTIEYL
Sbjct: 181 GAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPLGPGLKPPEERTIEYL 240
Query: 820 EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
EEVAV FAKGL+DKKIS KRDKGLVEKLTSYA+SIPFVRQQ+YKKVEEKVRKQTKGLYPA
Sbjct: 241 EEVAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIPFVRQQVYKKVEEKVRKQTKGLYPA 300
Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
PLKIIDVVKTGIEQG+DAGYLSESQKFGELAMTKESKALMGLY GQ LCKKNKFG
Sbjct: 301 PLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKESKALMGLYHGQVLCKKNKFGG-SLP 359
Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
V+ QVSVDK LKTILKDA+L LGRGQ+QVFKGLND V+KKALTSF
Sbjct: 360 VRDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQQQVFKGLNDKVKKKALTSF 419
Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
ERDS+F +LTGQLDYQG +KA
Sbjct: 420 ERDSIFSNLTGQLDYQGFEKA 440
Score = 30.4 bits (67), Expect(2) = 0.0
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 1415 KRHMVIEAVFEELSLKH 1465
K MVIEAVFE+LSLKH
Sbjct: 439 KADMVIEAVFEDLSLKH 455
>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
Coenzyme A dehydrogenase [Canis familiaris].
Length = 723
Score = 125 bits (314), Expect = 1e-28
Identities = 94/292 (32%), Positives = 150/292 (51%), Gaps = 1/292 (0%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+A+IR+ +P VN + + + + + + +++ VL + G F AGADI+
Sbjct: 11 LALIRLRNP--PVNAISTAVLRGIKDGLQKATTDRTVKAIVLCGAD-GKFSAGADIHSFG 67
Query: 424 ACTTSQEVT-QISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKT 600
S V I E QRT KP+VAAI G LGGGLELA+ C YRIA + +
Sbjct: 68 EPRKSDFVLGHIVDEIQRT-------EKPVVAAIQGLALGGGLELALGCHYRIAHAEAQ- 119
Query: 601 VLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXX 780
+G PEV LGILPGA GTQ LP+++GVPAA D++ +GR + AD+A K+G++D++V
Sbjct: 120 -IGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHVLADEALKLGILDEIVNSDPV 178
Query: 781 XXXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVE 960
E A+ A+ ++D+ + +R S+P + + I+ +
Sbjct: 179 --------------EEAIKLAQRISDQSLESRR------LCNKPIQSLPNM-ESIFSEAL 217
Query: 961 EKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKAL 1116
K++KQ G AP + V+ + + G E + F L + +++AL
Sbjct: 218 LKMQKQHPGCL-APETCVRAVQAAVHCPYEVGIQKEKELFMYLQKSGQARAL 268
>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
(Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
hydratase 1) [Canis familiaris].
Length = 575
Score = 102 bits (253), Expect = 1e-21
Identities = 69/210 (32%), Positives = 107/210 (50%)
Frame = +1
Query: 133 RFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLGQELHSE 312
R ++ L PG + + ++T G +V +I++N P + +N L L E
Sbjct: 298 RAALAKLLHAPGLLTTSCADFQYIITEKK---GKNSNVGLIQLNRPKA-LNALCNGLMME 353
Query: 313 FIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLE 492
+ + E + A++++ F AGADI + T S + +++L
Sbjct: 354 LNQAL-EAFEKDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQD---CYSSKFLSHWDQLA 409
Query: 493 KSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKM 672
+ KP++AA+NG LGGG ELA+ C I +K PE+LLG +PGAGGTQRL +
Sbjct: 410 QVKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFAQPEILLGTIPGAGGTQRLTRA 467
Query: 673 VGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
VG A +M+LTG I A AK+ GLV ++
Sbjct: 468 VGKSLAMEMVLTGDRISAQDAKQAGLVSKI 497
>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
precursor (AU-specific RNA-binding enoyl-CoA hydratase)
(AU-binding protein/enoyl-CoA hydratase) [Canis
familiaris].
Length = 340
Score = 101 bits (251), Expect = 2e-21
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ V+ IN +K NT + L + ++ + S ++R+ ++ S PG F AGAD+
Sbjct: 90 IVVLGINRAYAK-NTFSKSLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 148
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
S EV + + +++ P +AAI+G LGGGLELA++C R+A K
Sbjct: 149 KMNPS-EVGPFVSKIRAVIDEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 205
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
+G E L I+PG GGTQRLP+ +G+ A +++ + R + +AK +GL+ V
Sbjct: 206 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISH-VLEQNQE 264
Query: 784 XXXXXXRTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
+ ++ E VAV AK ++ + GL + YA +IP
Sbjct: 265 GDAAYRKALDLAREFLPQGPVAVRVAKLAINQGMEVDLVTGLAIEEACYAQTIP 318
>ref|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
2 [Canis familiaris].
Length = 147
Score = 93.6 bits (231), Expect = 4e-19
Identities = 55/151 (36%), Positives = 83/151 (54%)
Frame = +1
Query: 259 INSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTS 438
+N P S N LG L ++ +E + ++ Q+R + S G F AGAD+ + +
Sbjct: 1 MNRP-SACNALGNVLVNQLLEALAQLREDQQVRVLLFRSGVKGVFCAGADLKEREQMSEA 59
Query: 439 QEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPE 618
EV Q + ++ P +AA++G LGGGLELA++C R+A V+G E
Sbjct: 60 -EVGIFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASS--AVMGLIE 116
Query: 619 VLLGILPGAGGTQRLPKMVGVPAAFDMMLTG 711
G+LPGAGGTQRLP+ +GV A +++ TG
Sbjct: 117 TTRGLLPGAGGTQRLPRCIGVALAKELIFTG 147
>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 1 [Canis familiaris].
Length = 328
Score = 79.7 bits (195), Expect = 7e-15
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
Frame = +1
Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADI-NMLSAC 429
+++N P + N + + E +E N++ R AV+IS F AG D+ +M S
Sbjct: 70 VQLNRPEKR-NAMNKAFWREMVECFNKIAQDPDCR-AVVISGAGKVFTAGIDLMDMASEI 127
Query: 430 TTSQ--EVTQISQEA-------QRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
Q +V +IS Q TF +EK KP++AAI+G C+G G++L +C R
Sbjct: 128 LQPQGDDVARISWNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYC 187
Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
+D EV +G+ G QRLPK++G + ++ T R + AD+A GLV +
Sbjct: 188 AQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSR 245
Query: 760 L 762
+
Sbjct: 246 V 246
>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
protein isoform 2 [Canis familiaris].
Length = 248
Score = 74.7 bits (182), Expect = 2e-13
Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Frame = +1
Query: 310 EFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADI-NMLSACTTSQ--EVTQISQEA---- 468
E +E N++ R AV+IS F AG D+ +M S Q +V +IS
Sbjct: 8 EMVECFNKIAQDPDCR-AVVISGAGKVFTAGIDLMDMASEILQPQGDDVARISWNLRNLI 66
Query: 469 ---QRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
Q TF +EK KP++AAI+G C+G G++L +C R +D EV +G+
Sbjct: 67 TRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQD--AFFQVKEVDIGLAA 124
Query: 640 GAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQL 762
G QRLPK++G + ++ T R + AD+A GLV ++
Sbjct: 125 DVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRV 166
>ref|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
1 isoform 1 [Canis familiaris].
Length = 307
Score = 70.1 bits (170), Expect = 5e-12
Identities = 44/174 (25%), Positives = 91/174 (52%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ ++ +N+P SK+N + + +E + E+ + ++ + ++ +K F +G+D+N +
Sbjct: 64 IGILTLNNP-SKMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 121
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A T ++ + Q T +L + VA I G LGGG E+ +C +R+ T D +
Sbjct: 122 ALATPEDGMALCMFMQNTLTRLMRLPLISVALIQGRALGGGAEVTTACDFRLMTADGEIR 181
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
E +GI+P GG RL +++G A ++ + A +A +G+V++++
Sbjct: 182 FVHRE--MGIVPSWGGGTRLVELLGARQALKVLSGALPLDAARALSLGMVEEVL 233
>ref|XP_547179.2| PREDICTED: similar to 3,2-trans-enoyl-CoA isomerase, mitochondrial
precursor (Dodecenoyl-CoA delta-isomerase)
(D3,D2-enoyl-CoA isomerase) [Canis familiaris].
Length = 342
Score = 69.7 bits (169), Expect = 7e-12
Identities = 49/174 (28%), Positives = 82/174 (47%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+AV+++ P VN+L EL +E + + ++ + + ++ S PG F AG D+ M
Sbjct: 97 MAVMKLRKP--PVNSLSLELLTELVISLEKLENDKSFQGVIITSDSPGIFSAGLDL-MEM 153
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ + Q + +L S ++ A+NG GG LA+SC YRI + K
Sbjct: 154 CGRDPAHYAEYWKAVQELWLRLYLSHLVLICAVNGASPAGGCLLALSCDYRILADNPKYT 213
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E LGI+ L +G AA + G +A ++G+VDQ+V
Sbjct: 214 IGLNETQLGIVAPFWFADTLVNTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 267
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,396,111
Number of extensions: 1479490
Number of successful extensions: 4675
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4657
Number of HSP's successfully gapped: 19
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007379
(1467 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri... 703 0.0
Alignment gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo... 128 1e-29
Alignment gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei... 104 2e-22
Alignment gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p... 101 2e-21
Alignment gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H... 99 1e-20
Alignment gi|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [H... 98 2e-20
Alignment gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 82 1e-15
Alignment gi|NP_001910.2| enoyl-CoA delta isomerase 1, mitochondrial isof... 75 2e-13
Alignment gi|NP_001002030.1| enoyl-CoA hydratase domain-containing protei... 67 6e-11
Alignment gi|NP_001132982.1| enoyl-CoA hydratase domain-containing protei... 67 6e-11
>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
sapiens].
Length = 763
Score = 703 bits (1814), Expect(2) = 0.0
Identities = 363/441 (82%), Positives = 386/441 (87%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
MVA RAIG L RF+A + LR GYICRNFT SSALLTRTHINYGVKGDVAV+RINSPNSK
Sbjct: 1 MVACRAIGILSRFSAFRILRSRGYICRNFTGSSALLTRTHINYGVKGDVAVVRINSPNSK 60
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
VNTL +ELHSEF EVMNE+W+S QIRSAVLISSKPGCFIAGADINML+AC T QEVTQ+S
Sbjct: 61 VNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQLS 120
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
QEAQR EKLEKSTKPIVAAING+CLGGGLE+AISCQYRIATKD+KTVLG PEVLLG LP
Sbjct: 121 QEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALP 180
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
GAGGTQRLPKMVGVPAA DMMLTGR IRAD+AKKMGLVDQLV RTIEYL
Sbjct: 181 GAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYL 240
Query: 820 EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
EEVA+TFAKGLADKKISPKRDKGLVEKLT+YAM+IPFVRQQ+YKKVEEKVRKQTKGLYPA
Sbjct: 241 EEVAITFAKGLADKKISPKRDKGLVEKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPA 300
Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
PLKIIDVVKTGIEQGSDAGYL ESQKFGEL MTKESKALMGLY GQ LCKKNKFGAPQK+
Sbjct: 301 PLKIIDVVKTGIEQGSDAGYLCESQKFGELVMTKESKALMGLYHGQVLCKKNKFGAPQKD 360
Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
VKH QVSVDK LKTILKDA+L AL RGQ+QVFKGLND V+KKALTSF
Sbjct: 361 VKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTSF 420
Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
ERDS+F +LTGQLDYQG +KA
Sbjct: 421 ERDSIFSNLTGQLDYQGFEKA 441
Score = 30.4 bits (67), Expect(2) = 0.0
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 1415 KRHMVIEAVFEELSLKH 1465
K MVIEAVFE+LSLKH
Sbjct: 440 KADMVIEAVFEDLSLKH 456
>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
Length = 723
Score = 128 bits (322), Expect = 1e-29
Identities = 96/309 (31%), Positives = 156/309 (50%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+A+IR+ +P VN + L + E + + I+ A++I G F AGADI S
Sbjct: 11 LALIRLRNP--PVNAISTTLLRDIKEGLQKAVIDHTIK-AIVICGAEGKFSAGADIRGFS 67
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A T ++++++ KP+VAAI G GGGLELA+ C YRIA + +
Sbjct: 68 APRT------FGLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQ-- 119
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
+G PEV LG+LPGA GTQ LP++ GVPAA D++ +GR I AD+A K+G++D++V
Sbjct: 120 VGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPV- 178
Query: 784 XXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEE 963
E A+ FA+ ++D+ + +R S+P + I+ +
Sbjct: 179 -------------EEAIRFAQRVSDQPLESRR------LCNKPIQSLPNM-DSIFSEALL 218
Query: 964 KVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTL 1143
K+R+Q G A + V+ ++ + G E + F L + +++AL + +
Sbjct: 219 KMRRQHPGCL-AQEACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAER- 276
Query: 1144 CKKNKFGAP 1170
K NK+ P
Sbjct: 277 -KANKWSTP 284
>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
isoform 1 [Homo sapiens].
Length = 292
Score = 104 bits (259), Expect = 2e-22
Identities = 62/174 (35%), Positives = 95/174 (54%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ I +N P+++ N LG SE +E + ++ Q+R + S G F AGAD+
Sbjct: 42 ITEILMNRPSAR-NALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKERE 100
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ + EV Q + + P +AA++G LGGGLELA++C R+A V
Sbjct: 101 QMSEA-EVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASS--AV 157
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E G+LPGAGGTQRLP+ +GV A +++ TGR + +A +GLV+ V
Sbjct: 158 MGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAV 211
>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
sapiens].
Length = 339
Score = 101 bits (251), Expect = 2e-21
Identities = 58/174 (33%), Positives = 96/174 (55%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ V+ IN K N+L + L + ++ + S ++R+ ++ S PG F AGAD+
Sbjct: 89 IVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE-R 146
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A +S EV + + + P +AAI+G LGGGLELA++C R+A K
Sbjct: 147 AKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 204
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E L I+PG GGTQRLP+ +G+ A +++ + R + +AK +GL+ ++
Sbjct: 205 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 258
>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
Length = 290
Score = 98.6 bits (244), Expect = 1e-20
Identities = 70/221 (31%), Positives = 108/221 (48%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
M A R + S R +RCP + R F + G V +I++N P +
Sbjct: 1 MAALRVLLSCVRGPLRPPVRCPAW--RPFASGANFEYIIAEKRGKNNTVGLIQLNRPKA- 57
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
+N L L E + + + + A++++ F AGADI + + S
Sbjct: 58 LNALCDGLIDELNQAL-KTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQD---CYS 113
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
+ + ++ L + KP++AA+NG GGG ELA+ C I +K PE+L+G +P
Sbjct: 114 SKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCD--IIYAGEKAQFAQPEILIGTIP 171
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
GAGGTQRL + VG A +M+LTG I A AK+ GLV ++
Sbjct: 172 GAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 212
>ref|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [Homo sapiens].
Length = 627
Score = 98.2 bits (243), Expect = 2e-20
Identities = 68/211 (32%), Positives = 110/211 (52%)
Frame = +1
Query: 538 GGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRG 717
GGGLELA+ C YRIA + + +G PEV LG+LPGA GTQ LP++ GVPAA D++ +GR
Sbjct: 4 GGGLELALGCHYRIAHAEAQ--VGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRR 61
Query: 718 IRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVE 897
I AD+A K+G++D++V E A+ FA+ ++D+ + +R
Sbjct: 62 ILADEALKLGILDKVVNSDPV--------------EEAIRFAQRVSDQPLESRR------ 101
Query: 898 KLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQK 1077
S+P + I+ + K+R+Q G A + V+ ++ + G E +
Sbjct: 102 LCNKPIQSLPNM-DSIFSEALLKMRRQHPGCL-AQEACVRAVQAAVQYPYEVGIKKEEEL 159
Query: 1078 FGELAMTKESKALMGLYRGQTLCKKNKFGAP 1170
F L + +++AL + + K NK+ P
Sbjct: 160 FLYLLQSGQARALQYAFFAER--KANKWSTP 188
>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
precursor [Homo sapiens].
Length = 328
Score = 82.0 bits (201), Expect = 1e-15
Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 28/249 (11%)
Frame = +1
Query: 100 MVASRAIGSL--RRFTASQTLRCPGY-ICRNFTRSSALLTRTHINYGVKGD--------- 243
+VASR + L RR T S PG I T SSA + + G D
Sbjct: 5 IVASRRLRDLLTRRLTGSNY---PGLSISLRLTGSSAQEEASGVALGEAPDHSYESLRVT 61
Query: 244 -----VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
V +++N PN + N + + E +E N++ + R AV+IS F AG D
Sbjct: 62 SAQKHVLHVQLNRPNKR-NAMNKVFWREMVECFNKISRDADCR-AVVISGAGKMFTAGID 119
Query: 409 INMLSA----------CTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELA 558
+ +++ S + I Q TF +E+ KP++AA++G C+GGG++L
Sbjct: 120 LMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLV 179
Query: 559 ISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKA 735
+C R +D EV +G+ G QRLPK++G + ++ T R + AD+A
Sbjct: 180 TACDIRYCAQD--AFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEA 237
Query: 736 KKMGLVDQL 762
GLV ++
Sbjct: 238 LGSGLVSRV 246
>ref|NP_001910.2| enoyl-CoA delta isomerase 1, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 302
Score = 74.7 bits (182), Expect = 2e-13
Identities = 50/174 (28%), Positives = 86/174 (49%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
VAV++ +P VN+L E +E + + ++ + R +L S +PG F AG D+ +
Sbjct: 57 VAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ + + Q + +L +S +V+AING C GG +A++C YRI + +
Sbjct: 115 GRSPAH-YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 173
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E LGI+ L +G AA + G +A ++G+VDQ+V
Sbjct: 174 IGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 227
>ref|NP_001002030.1| enoyl-CoA hydratase domain-containing protein 1 isoform 1 [Homo
sapiens].
Length = 301
Score = 66.6 bits (161), Expect = 6e-11
Identities = 40/174 (22%), Positives = 89/174 (51%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ ++ +N+P S++N + + +E + E+ + ++ + ++ +K F +G+D+N +
Sbjct: 58 IGILTLNNP-SRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 115
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ T ++ + Q T + + VA + G LGGG E +C +R+ T + K
Sbjct: 116 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 175
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
E +GI+P GGT RL +++G A ++ + + A +G+V++++
Sbjct: 176 FVHKE--MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL 227
>ref|NP_001132982.1| enoyl-CoA hydratase domain-containing protein 1 isoform 5 [Homo
sapiens].
Length = 307
Score = 66.6 bits (161), Expect = 6e-11
Identities = 40/174 (22%), Positives = 89/174 (51%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ ++ +N+P S++N + + +E + E+ + ++ + ++ +K F +G+D+N +
Sbjct: 64 IGILTLNNP-SRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 121
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ T ++ + Q T + + VA + G LGGG E +C +R+ T + K
Sbjct: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 181
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
E +GI+P GGT RL +++G A ++ + + A +G+V++++
Sbjct: 182 FVHKE--MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,372,941
Number of extensions: 1452077
Number of successful extensions: 4285
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4257
Number of HSP's successfully gapped: 28
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007379
(1467 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 672 0.0
Alignment gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus]. 124 2e-28
Alignment gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2... 112 1e-24
Alignment gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M... 102 8e-22
Alignment gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p... 100 4e-21
Alignment gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi... 80 5e-15
Alignment gi|NP_001103665.1| enoyl-CoA hydratase domain-containing protei... 73 7e-13
Alignment gi|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1... 73 7e-13
Alignment gi|NP_034153.2| enoyl-CoA delta isomerase 1, mitochondrial prec... 70 3e-12
Alignment gi|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondria... 63 5e-10
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 672 bits (1733), Expect(2) = 0.0
Identities = 342/441 (77%), Positives = 380/441 (86%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
MVASRAIGSL RF+A + LR G ICR+FT SSALLTRTHINYGVKGDVAVIRINSPNSK
Sbjct: 1 MVASRAIGSLSRFSAFRILRSRGCICRSFTTSSALLTRTHINYGVKGDVAVIRINSPNSK 60
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
VNTL +E+ SEFIEVMNE+W++ QIRSAVLISSKPGCF+AGADINMLS+CTT QE T+IS
Sbjct: 61 VNTLNKEVQSEFIEVMNEIWANDQIRSAVLISSKPGCFVAGADINMLSSCTTPQEATRIS 120
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
QE QR FEKLEKS KP+VAAI+G+CLGGGLELAI+CQYRIATKD+KTVLG PEVLLGILP
Sbjct: 121 QEGQRMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILP 180
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
GAGGTQRLPKMVGVPAAFDMMLTGR IRAD+AKKMGLVDQLV RTIEYL
Sbjct: 181 GAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPLGPGIKSPEERTIEYL 240
Query: 820 EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
EEVAV FAKGLAD+K+S K+ KGLVEKLT+YAM++PFVRQQ+YK VEEKV+KQTKGLYPA
Sbjct: 241 EEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQQVYKTVEEKVKKQTKGLYPA 300
Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
PLKIID VK G+EQGSDAGYL+ESQKFGELA+TKESKALMGLY GQ LCKKNKFGAPQK
Sbjct: 301 PLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNGQVLCKKNKFGAPQKN 360
Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
V+ QVSVDK LKT+LKD ++ LGRGQ+QVFKGLND V+KKALTSF
Sbjct: 361 VQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQQQVFKGLNDKVKKKALTSF 420
Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
ERDS+F +L GQLDY+G +KA
Sbjct: 421 ERDSIFSNLIGQLDYKGFEKA 441
Score = 27.7 bits (60), Expect(2) = 0.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 1415 KRHMVIEAVFEELSLKH 1465
K MVIEAVFE+L +KH
Sbjct: 440 KADMVIEAVFEDLGVKH 456
>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
Length = 718
Score = 124 bits (311), Expect = 2e-28
Identities = 99/309 (32%), Positives = 154/309 (49%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+A+IR+ +P VN + + +E + + +R+ V+ + F AGADI+
Sbjct: 11 LAMIRLCNP--PVNAISPTVITEVRNGLQKASLDHTVRAIVICGANDN-FCAGADIHGFK 67
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ T + + E QR KP+VAAI G LGGGLELA+ C YRIA + K
Sbjct: 68 S-PTGLTLGSLVDEIQRY-------QKPVVAAIQGVALGGGLELALGCHYRIA--NAKAR 117
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
+G PEV+LGILPGA GTQ LP++VGVP A D++ +GR I D+A K+G++D +V
Sbjct: 118 VGFPEVMLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPV- 176
Query: 784 XXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEE 963
E A+ FA+ + K I P+R L S+P + ++ +
Sbjct: 177 -------------EEAIKFAQTVIGKPIEPRR------ILNKPVPSLPNM-DSVFAEAIA 216
Query: 964 KVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTL 1143
KVRKQ G AP + V+ ++ + E++ F L + +++AL + +
Sbjct: 217 KVRKQYPGRL-APETCVRSVQASVKHPYEVAIKEEAKLFMYLRGSGQARALQYAFFAEK- 274
Query: 1144 CKKNKFGAP 1170
NK+ P
Sbjct: 275 -SANKWSTP 282
>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
precursor [Mus musculus].
Length = 296
Score = 112 bits (279), Expect = 1e-24
Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 6/239 (2%)
Frame = +1
Query: 229 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
G + I +N PN++ N LG SE +E + ++ Q+R + S+ G F AGAD
Sbjct: 41 GPNQGITEILMNRPNAR-NALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGAD 99
Query: 409 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
+ + EV Q + ++ P +AA++G LGGGLELA++C RIA
Sbjct: 100 LKEREQMS-DVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAAS 158
Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVX 768
V+G E G+LPGAGGTQRLP+ +GV A +++ TGR + +A+++GLV+ V
Sbjct: 159 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAV- 215
Query: 769 XXXXXXXXXXXRTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
R + +E +AV K D+ + G+ + YA +IP
Sbjct: 216 AQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNIP 274
>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
Length = 290
Score = 102 bits (254), Expect = 8e-22
Identities = 73/221 (33%), Positives = 109/221 (49%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
M A RA+ + ++RCP R F + G V +I++N P +
Sbjct: 1 MAALRALLPRACSSLLSSVRCPEL--RRFASGANFQYIITEKKGKNSSVGLIQLNRPKA- 57
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
+N L L E + + E + A++++ F AGADI + T S
Sbjct: 58 LNALCNGLIEELNQAL-ETFEQDPAVGAIVLTGGDKAFAAGADIKEMQNRTFQD---CYS 113
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
+ ++ + + KP++AA+NG LGGG ELA+ C I +K G PE+LLG +P
Sbjct: 114 SKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEILLGTIP 171
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
GAGGTQRL + VG A +M+LTG I A AK+ GLV ++
Sbjct: 172 GAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 212
>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 100 bits (248), Expect = 4e-21
Identities = 58/174 (33%), Positives = 94/174 (54%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ V+ IN K N L + L + ++ + S ++R+ ++ S PG F AGAD+
Sbjct: 64 IVVLGINRAYGK-NALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE-R 121
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A S EV + + + P +AAI+G LGGGLELA++C R+A K
Sbjct: 122 AKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 179
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E L I+PG GGTQRLP+ +G+ A +++ + R + +AK +GL+ ++
Sbjct: 180 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVL 233
>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
precursor [Mus musculus].
Length = 327
Score = 79.7 bits (195), Expect = 5e-15
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
Frame = +1
Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS--- 423
+++N P + N + + E +E ++ S R AV++S F +G D+ ++
Sbjct: 69 VQLNRPEKR-NAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASEL 126
Query: 424 -------ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
A + + + + Q+TF +EK KP++AAI+G C+GGG++L +C R
Sbjct: 127 MQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYC 186
Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
T+D EV +G+ G QRLPK++G + ++ + R + AD+A GLV +
Sbjct: 187 TQD--AFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSR 244
Query: 760 L 762
+
Sbjct: 245 V 245
>ref|NP_001103665.1| enoyl-CoA hydratase domain-containing protein 1 isoform b [Mus
musculus].
Length = 299
Score = 72.8 bits (177), Expect = 7e-13
Identities = 43/174 (24%), Positives = 93/174 (53%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ ++ +N+PN K+N + + +E + E+ + ++ + ++ +K F +G+D+N +
Sbjct: 56 IGILTLNNPN-KMNAFSGVMMLQLLERVIELENWTEGKGLIIHGAK-NTFCSGSDLNAVK 113
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A +T + +S Q T + + VA + G +GGG EL +C +R+ T++ +V
Sbjct: 114 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEE--SV 171
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+ +GI+P GGT RL +++G A ++ + + +A +GL D+++
Sbjct: 172 IRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVL 225
>ref|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1 isoform a [Mus
musculus].
Length = 322
Score = 72.8 bits (177), Expect = 7e-13
Identities = 43/174 (24%), Positives = 93/174 (53%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ ++ +N+PN K+N + + +E + E+ + ++ + ++ +K F +G+D+N +
Sbjct: 79 IGILTLNNPN-KMNAFSGVMMLQLLERVIELENWTEGKGLIIHGAK-NTFCSGSDLNAVK 136
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A +T + +S Q T + + VA + G +GGG EL +C +R+ T++ +V
Sbjct: 137 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEE--SV 194
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+ +GI+P GGT RL +++G A ++ + + +A +GL D+++
Sbjct: 195 IRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVL 248
>ref|NP_034153.2| enoyl-CoA delta isomerase 1, mitochondrial precursor [Mus
musculus].
Length = 289
Score = 70.5 bits (171), Expect = 3e-12
Identities = 51/174 (29%), Positives = 83/174 (47%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
VAV+++ +P VN+L E +EF + ++ + IR +L S PG F AG D+ +
Sbjct: 44 VAVMKLRNP--PVNSLSLECLTEFTISLEKLENDKSIRGVILTSECPGIFSAGLDLLEMY 101
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ + + Q + +L S +V+AING GG LA+ C YR+ + K
Sbjct: 102 GRNPAH-YAEYWKNVQELWLRLYTSNMILVSAINGASPAGGCLLALCCDYRVMADNPKYT 160
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E LLGI+ +G A + G +A K+G+VD++V
Sbjct: 161 IGLNESLLGIVAPFWFKDMYVNTIGHREAERALQLGTLFSPAEALKVGVVDEVV 214
>ref|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Mus
musculus].
Length = 385
Score = 63.2 bits (152), Expect = 5e-10
Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 3/180 (1%)
Frame = +1
Query: 235 KGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPG-CFIAGADI 411
+G VI +N P +N L + + + + W ++I G F AG DI
Sbjct: 42 RGCGGVITLNRPKF-LNALSLNMIRQIYPQL-KTWEQDPDTFLIIIKGAGGKAFCAGGDI 99
Query: 412 NMLS-ACTTSQEVTQ-ISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIAT 585
LS A Q +TQ + +E + KP VA I+G +GGG+ L++ Q+R+AT
Sbjct: 100 KALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVAT 159
Query: 586 KDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
++++ PE +G+ P GG LP++ G F + LTG ++ + G+ V
Sbjct: 160 --ERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYF-LALTGYRLKGRDVHRAGIATHFV 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,991,758
Number of extensions: 1219218
Number of successful extensions: 3911
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3890
Number of HSP's successfully gapped: 16
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007379
(1467 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 786 0.0
Alignment gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [... 130 2e-30
Alignment gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai... 105 8e-23
Alignment gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m... 100 4e-21
Alignment gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro... 97 2e-20
Alignment gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,... 80 2e-15
Alignment gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria... 80 2e-15
Alignment gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945... 53 5e-07
Alignment gi|XP_001927544.3| PREDICTED: chromodomain Y-like protein, part... 49 7e-06
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 786 bits (2029), Expect(2) = 0.0
Identities = 409/441 (92%), Positives = 412/441 (93%)
Frame = +1
Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK
Sbjct: 1 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 60
Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS
Sbjct: 61 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 120
Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP
Sbjct: 121 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 180
Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV RTIEYL
Sbjct: 181 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVEPLGPGLKPPEERTIEYL 240
Query: 820 EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA
Sbjct: 241 EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 300
Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE
Sbjct: 301 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 360
Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
VKH QVSVDKHLKTILKDASLPALGRGQ+QVFKGLND VRKKALTSF
Sbjct: 361 VKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKKALTSF 420
Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
ERDSLF +LTGQLDYQG +KA
Sbjct: 421 ERDSLFSNLTGQLDYQGFEKA 441
Score = 31.6 bits (70), Expect(2) = 0.0
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +2
Query: 1415 KRHMVIEAVFEELSLKH 1465
K MVIEAVFEELSLKH
Sbjct: 440 KADMVIEAVFEELSLKH 456
>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
Length = 723
Score = 130 bits (326), Expect = 2e-30
Identities = 95/309 (30%), Positives = 158/309 (51%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+A++R+ +P VN L + E + + + ++ A++I G F AGADI+ S
Sbjct: 11 LALLRLRNP--PVNALSVSVLHGIKEGLQKALTDHTVK-AIVICGTDGIFSAGADIHGFS 67
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
A TS +K+++ KP+VAAI G LGGGLELA+ C YRIA + +
Sbjct: 68 AHKTSDLTLG------DIVDKIQRYEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQ-- 119
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
+G PEV LGILPGA GTQ LP+++GVPAA D++ +GR I A++A+K+G++D++V
Sbjct: 120 VGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHISANEARKLGILDEVVNSDPV- 178
Query: 784 XXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEE 963
E A+ FA+ + D+ + +R + + ++ I+ +
Sbjct: 179 -------------EEAIRFAQRVLDQTLESRR-------ICNKSVQSLSNMDTIFSEALL 218
Query: 964 KVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTL 1143
K+RKQ G A + V+ ++ + G E + F L + +++AL + +
Sbjct: 219 KMRKQYPGCL-AQETCVRAVQAAVQYPYETGIKKEEELFMYLQKSGQARALQYAFLAER- 276
Query: 1144 CKKNKFGAP 1170
NK+ P
Sbjct: 277 -SANKWSTP 284
>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
mitochondrial-like isoform 1 [Sus scrofa].
Length = 275
Score = 105 bits (261), Expect = 8e-23
Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ I +N P+++ N LG S+ +E + ++ +R + S G F AGAD+
Sbjct: 25 ITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 83
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+ + EV Q + ++ P +AA++G LGGGLELA++C R+A V
Sbjct: 84 QMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASS--AV 140
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
+G E G+LPGAGGTQRLP+ +GV A +++ TGR + +A+ +GLV+ V
Sbjct: 141 MGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAV-AQNEE 199
Query: 784 XXXXXXRTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
R + +E +AV K D+ I G+ + YA +IP
Sbjct: 200 GNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 253
>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
scrofa].
Length = 338
Score = 99.8 bits (247), Expect = 4e-21
Identities = 57/174 (32%), Positives = 97/174 (55%)
Frame = +1
Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
+ V+ IN +K N+L + L + ++ + S ++R+ ++ S PG F AGAD+
Sbjct: 88 IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 146
Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
+S EV + + ++ P +AAI+G LGGGLELA++C R+A K
Sbjct: 147 KMHSS-EVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 203
Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
+G E L I+PG GGTQRLP+ +G+ A +++ + R + +AK +GL+ ++
Sbjct: 204 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVL 257
>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
Length = 290
Score = 97.1 bits (240), Expect = 2e-20
Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 3/253 (1%)
Frame = +1
Query: 229 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
G +V +I++N P + +N L + L E + + + + A++++ F AGAD
Sbjct: 42 GKSSNVGLIQLNRPKA-LNALCKGLILELNQAL-QAFEEDPAVGAIVLTGGEKAFAAGAD 99
Query: 409 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
I + T S ++ L + KP++AA+NG LGGG ELA+ C I
Sbjct: 100 IKEMQNQTFQD---CYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCD--IIYA 154
Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVX 768
+K G PE+LLG +PG GGTQRL + VG +M+LTG I A +AK+ GLV ++
Sbjct: 155 GEKAQFGQPEILLGTIPGTGGTQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIF- 213
Query: 769 XXXXXXXXXXXRTIEYLEEVAVTFAKGLAD-KKISPKRDKGLVEKL--TSYAMSIPFVRQ 939
+E L E A+ A+ +A KI K V TS A + ++
Sbjct: 214 ------------PVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKK 261
Query: 940 QIYKKVEEKVRKQ 978
Y + RK+
Sbjct: 262 LFYSTFATEDRKE 274
>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
scrofa].
Length = 322
Score = 80.5 bits (197), Expect = 2e-15
Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
Frame = +1
Query: 232 VKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD- 408
V+ V +++N P + N + + E + N++ R AV+IS F +G D
Sbjct: 57 VQKHVLHVQLNRPEKR-NAMNRAFWREMVVCFNKIAQDPDCR-AVVISGAGKMFTSGIDL 114
Query: 409 INMLSACTTSQ--EVTQIS-------QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAI 561
++M S Q +V +IS + Q TF +EK KP++AAI+G C+GGG++L
Sbjct: 115 VDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLIT 174
Query: 562 SCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAK 738
+C R +D EV +G+ G QRLPK++G + ++ T R + AD+A
Sbjct: 175 ACDIRYCAQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 232
Query: 739 KMGLVDQL 762
GLV ++
Sbjct: 233 NSGLVSRI 240
>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
Length = 341
Score = 80.5 bits (197), Expect = 2e-15
Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 3/209 (1%)
Frame = +1
Query: 361 AVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLG 540
A++++ F AGADI + T S ++ L + KP++AA+NG LG
Sbjct: 135 AIVLTGGEKAFAAGADIKEMQNQTFQD---CYSGGFLSHWDHLSRVRKPVIAAVNGYALG 191
Query: 541 GGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGI 720
GG ELA+ C I +K G PE+L P GGTQRL + VG +M+LTG I
Sbjct: 192 GGCELAMMCD--IIYAGEKAQFGQPELLSETCPRTGGTQRLTRAVGKSLTMEMVLTGDRI 249
Query: 721 RADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYLEEVAVTFAKGLAD-KKISPKRDKGLVE 897
A +AK+ GLV ++ +E L E A+ A+ +A KI K V
Sbjct: 250 SAQEAKQAGLVSKIF-------------PVETLVEEAIQCAEKIASYSKIVTAMAKESVN 296
Query: 898 KL--TSYAMSIPFVRQQIYKKVEEKVRKQ 978
TS A + ++ Y + RK+
Sbjct: 297 AAFETSLAEGLKLEKKLFYSTFATEDRKE 325
>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
Length = 845
Score = 52.8 bits (125), Expect = 5e-07
Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
Frame = +1
Query: 340 SSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAA 519
+ S+ ++IS++ F +G D+ L+A ++ + ++ PI+A
Sbjct: 631 AESRDLKVIVISAEGPVFSSGHDLKELTAEQGPDYHAEVFRACSEVMMLIQNHPVPIIAM 690
Query: 520 INGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGIL---PGAGGTQRLPKMVGVPAA 690
+NG G +L SC IA K+ P V +G+ PG + LP+ V A
Sbjct: 691 VNGLATAAGCQLVASCD--IAVASDKSSFATPGVTIGLFCSTPGVAVGRALPRKV----A 744
Query: 691 FDMMLTGRGIRADKAKKMGLVDQLV 765
+M+ TG + A +A GL+ ++V
Sbjct: 745 LEMLFTGEPMSAQEALLHGLLSRVV 769
>ref|XP_001927544.3| PREDICTED: chromodomain Y-like protein, partial [Sus scrofa].
Length = 182
Score = 48.9 bits (115), Expect = 7e-06
Identities = 28/87 (32%), Positives = 44/87 (50%)
Frame = +1
Query: 502 KPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGV 681
KPI+ A+NG +G G + C + ++K P G P T PK++G
Sbjct: 23 KPIIVAVNGPAIGLGASILPLCD--VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGG 80
Query: 682 PAAFDMMLTGRGIRADKAKKMGLVDQL 762
+A +M+L+GR + A +A GLV Q+
Sbjct: 81 ASANEMLLSGRKLTAQEACGKGLVSQV 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,797,902
Number of extensions: 922786
Number of successful extensions: 3093
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3082
Number of HSP's successfully gapped: 10
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007379
(1467 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 323 2e-85
>Sscrofa_Chr03
|| Length = 144787322
Score = 323 bits (163), Expect = 2e-85
Identities = 166/167 (99%)
Strand = Plus / Plus
Query: 1 gtacgtcggacgcctggccagggccagccggcgggaagaaaagtcctctggctgccacca 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 119690599 gtacgtcggacgcctggccaggggcagccggcgggaagaaaagtcctctggctgccacca 119690658
Query: 61 gctccagcaactttccagtttcgtcctctcctgctcaagatggtcgcctcccgggcaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119690659 gctccagcaactttccagtttcgtcctctcctgctcaagatggtcgcctcccgggcaata 119690718
Query: 121 ggcagcctccgtcgcttcactgcctcccagacgctccgctgcccagg 167
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119690719 ggcagcctccgtcgcttcactgcctcccagacgctccgctgcccagg 119690765
Score = 276 bits (139), Expect = 3e-71
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 414 catgttatcagcttgcacgacctctcaagaggtaacgcaaatatcacaggaagcacagag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119747871 catgttatcagcttgcacgacctctcaagaggtaacgcaaatatcacaggaagcacagag 119747930
Query: 474 aacatttgagaaacttgagaagtccacaaagcctattgtggctgccatcaatggaacctg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119747931 aacatttgagaaacttgagaagtccacaaagcctattgtggctgccatcaatggaacctg 119747990
Query: 534 cttaggaggaggacttgag 552
|||||||||||||||||||
Sbjct: 119747991 cttaggaggaggacttgag 119748009
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 278 aggtaaatactctgggtcaggaactgcattcagagttcatagaagtgatgaatgaagtct 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119697929 aggtaaatactctgggtcaggaactgcattcagagttcatagaagtgatgaatgaagtct 119697988
Query: 338 ggtctagcagtcagatcagaagcgctgtccttatctcatcaaagccaggctgcttcattg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119697989 ggtctagcagtcagatcagaagcgctgtccttatctcatcaaagccaggctgcttcattg 119698048
Query: 398 caggtgctgatatcaa 413
||||||||||||||||
Sbjct: 119698049 caggtgctgatatcaa 119698064
Score = 260 bits (131), Expect = 2e-66
Identities = 134/135 (99%)
Strand = Plus / Plus
Query: 1185 gcaccttgccattcttggcgcagggctgatgggagccggcattgcccaggtctccgtgga 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119771200 gcaccttgccattcttggcgcagggctgatgggagccggcattgcccaggtctccgtgga 119771259
Query: 1245 taagcacctaaagactatacttaaggatgcttcactgccggcgctgggccgaggacagga 1304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 119771260 taagcacctaaagactatacttaaggatgcttcactgccggcgctgggccgaggacagca 119771319
Query: 1305 acaagtgttcaaagg 1319
|||||||||||||||
Sbjct: 119771320 acaagtgttcaaagg 119771334
Score = 246 bits (124), Expect = 3e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 775 ggaccaggattaaaacctccagaggaacggacaattgaatacctagaagaagttgcagtt 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119763015 ggaccaggattaaaacctccagaggaacggacaattgaatacctagaagaagttgcagtt 119763074
Query: 835 acttttgccaaaggactagctgataaaaagatctctccaaagagagacaagggactggtg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119763075 acttttgccaaaggactagctgataaaaagatctctccaaagagagacaagggactggtg 119763134
Query: 895 gaaa 898
||||
Sbjct: 119763135 gaaa 119763138
Score = 240 bits (121), Expect = 2e-60
Identities = 124/125 (99%)
Strand = Plus / Plus
Query: 551 agcttgccatttcgtgccagtacagaatagcaacaaaagataagaaaacagtattagggg 610
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 119749254 agcttgccatttcgtgccagtacagaatagcaacaaaagataagaaaacagtgttagggg 119749313
Query: 611 cccctgaagtcttgctgggaatcttaccaggagcaggaggcacacaaaggctacccaaaa 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119749314 cccctgaagtcttgctgggaatcttaccaggagcaggaggcacacaaaggctacccaaaa 119749373
Query: 671 tggtg 675
|||||
Sbjct: 119749374 tggtg 119749378
Score = 240 bits (121), Expect = 2e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 899 aactgacatcgtacgccatgagtattccatttgtcagacaacagatttacaaaaaggtgg 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119764039 aactgacatcgtacgccatgagtattccatttgtcagacaacagatttacaaaaaggtgg 119764098
Query: 959 aagaaaaagtacgaaagcagaccaaaggcctttatcctgcgcctctgaaaattatcgatg 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119764099 aagaaaaagtacgaaagcagaccaaaggcctttatcctgcgcctctgaaaattatcgatg 119764158
Query: 1019 t 1019
|
Sbjct: 119764159 t 119764159
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 1073 agaaatttggagagcttgcaatgaccaaagaatcaaaagccttgatgggactttaccgtg 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119767620 agaaatttggagagcttgcaatgaccaaagaatcaaaagccttgatgggactttaccgtg 119767679
Query: 1133 gtcagaccctatgcaagaagaataaatttggagctccgcagaaggaggttaag 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119767680 gtcagaccctatgcaagaagaataaatttggagctccgcagaaggaggttaag 119767732
Score = 216 bits (109), Expect = 3e-53
Identities = 144/152 (94%), Gaps = 4/152 (2%)
Strand = Plus / Plus
Query: 1319 gactgaatgattaagtgagaaagaaagcactaacatcatttgaaagggactccctttttc 1378
||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 119773328 gactgaatgataaagtgaggaagaaagcactaacatcatttgaaagggactccc-ttttc 119773386
Query: 1379 agc-acttgaccgggcagctcgattaccagggtttgaaaaaggc--acatggtgattgaa 1435
||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 119773387 agcaacttgaccgggcagctcgattaccagggttttgaaaaggccgacatggtgattgaa 119773446
Query: 1436 gctgttttcgaagagctgagtcttaagcacaa 1467
||||||||||||||||||||||||||||||||
Sbjct: 119773447 gctgttttcgaagagctgagtcttaagcacaa 119773478
Score = 208 bits (105), Expect = 6e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 672 ggtgggtgtgcctgctgcttttgacatgatgctgactggtagaggcattcgggcagacaa 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119752463 ggtgggtgtgcctgctgcttttgacatgatgctgactggtagaggcattcgggcagacaa 119752522
Query: 732 agcaaagaaaatggggctggttgaccaactggtggaaccgctggg 776
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119752523 agcaaagaaaatggggctggttgaccaactggtggaaccgctggg 119752567
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 209 ccagaacccatattaactatggagtcaaaggggatgtggcagttatccgaattaactcac 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119696644 ccagaacccatattaactatggagtcaaaggggatgtggcagttatccgaattaactcac 119696703
Query: 269 ccaattcaaaggta 282
||||||||||||||
Sbjct: 119696704 ccaattcaaaggta 119696717
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 1018 gtagtaaagactgggatcgagcaagggagtgacgccggctatctctctgaatctcag 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119765882 gtagtaaagactgggatcgagcaagggagtgacgccggctatctctctgaatctcag 119765938
Score = 89.7 bits (45), Expect = 4e-15
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 164 cagggtacatttgccgcaactttacaaggtcttctgctttgctga 208
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119696506 cagggtacatttgccgcaactttacaaggtcttctgctttgctga 119696550
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,740,262
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 13
Length of query: 1467
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1446
Effective length of database: 2,808,413,156
Effective search space: 4060965423576
Effective search space used: 4060965423576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)