Animal-Genome cDNA 20110601C-007379


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007379
         (1467 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri...   689   0.0  
Alignment   gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].     124   2e-28
Alignment   gi|NP_001033625.1| enoyl-CoA hydratase domain-containing protei...   108   2e-23
Alignment   gi|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor...   105   1e-22
Alignment   gi|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, per...    81   2e-15
Alignment   gi|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, per...    81   2e-15
Alignment   gi|NP_001030492.1| enoyl-CoA hydratase domain-containing protei...    70   6e-12
Alignment   gi|NP_001039861.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial...    70   6e-12
Alignment   gi|NP_001039878.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochond...    66   9e-11
Alignment   gi|NP_001157257.1| chromodomain Y-like protein 2 [Bos taurus].        58   2e-08

>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
          Length = 773

 Score =  689 bits (1779), Expect(2) = 0.0
 Identities = 356/427 (83%), Positives = 380/427 (88%)
 Frame = +1

Query: 142  ASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLGQELHSEFIE 321
            AS  L    YICR+FTRSSALLTRTHINYGV+GDVAVIRINSPNSKVNTL QELHSEF+E
Sbjct: 25   ASLVLPLLRYICRSFTRSSALLTRTHINYGVRGDVAVIRINSPNSKVNTLSQELHSEFME 84

Query: 322  VMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLEKST 501
            VMNEVWSSSQIRSAVLIS+KPGCFIAGAD+NML++CTTSQEVTQISQEAQ+ FEKLEKST
Sbjct: 85   VMNEVWSSSQIRSAVLISTKPGCFIAGADLNMLNSCTTSQEVTQISQEAQKMFEKLEKST 144

Query: 502  KPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGV 681
            KP+VAAING+CLGGGLELAISCQYRIATKDKKTVLG+PEVLLGILPGAG TQRLPKMVG 
Sbjct: 145  KPVVAAINGSCLGGGLELAISCQYRIATKDKKTVLGSPEVLLGILPGAGATQRLPKMVGR 204

Query: 682  PAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYLEEVAVTFAKGLADK 861
            PAAFDMMLTGRGIRAD+AKKMGLVDQLV            RTIEYLEEVA+TFAKGLADK
Sbjct: 205  PAAFDMMLTGRGIRADRAKKMGLVDQLVEPLGPGVKPPEERTIEYLEEVAITFAKGLADK 264

Query: 862  KISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQ 1041
            KI+PKRDKGLVEKLTSYA+SIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQ
Sbjct: 265  KITPKRDKGLVEKLTSYALSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQ 324

Query: 1042 GSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXX 1221
            GS AGYLSESQ FGELAMTKESKALMGLYRGQT CKKNKFGAPQKEVK            
Sbjct: 325  GSTAGYLSESQTFGELAMTKESKALMGLYRGQTQCKKNKFGAPQKEVKQLAVVGAGLMGA 384

Query: 1222 XXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSFERDSLFQHLTGQLD 1401
               QVSVDK L+TILKD +LPALGRGQ+QVFKGLND V+KK LTSFERD++F +L GQLD
Sbjct: 385  GIAQVSVDKGLQTILKDTTLPALGRGQQQVFKGLNDKVKKKTLTSFERDAMFSNLIGQLD 444

Query: 1402 YQGLKKA 1422
            Y+G +KA
Sbjct: 445  YRGFEKA 451



 Score = 29.3 bits (64), Expect(2) = 0.0
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +2

Query: 1415 KRHMVIEAVFEELSLKH 1465
            K  MVIEAVFE+L+LKH
Sbjct: 450  KADMVIEAVFEDLNLKH 466


>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
          Length = 723

 Score =  124 bits (311), Expect = 2e-28
 Identities = 96/310 (30%), Positives = 159/310 (51%), Gaps = 1/310 (0%)
 Frame = +1

Query: 244  VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
            +A+IR+ +P   VN +   +     E + +  +   ++ A++I    G F AGADI    
Sbjct: 11   LALIRLRNP--PVNAISTTVARGIKESLQKAITDDTVK-AIVICGADGIFCAGADIREFK 67

Query: 424  ACTTSQ-EVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKT 600
               T   ++  I  E QR       + KP+VAAI    LGGGLELA+ C YRIA  + + 
Sbjct: 68   VHKTFDIQLGDIVDEIQR-------NKKPVVAAIQKLALGGGLELALGCHYRIAHAEAQ- 119

Query: 601  VLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXX 780
             +G PEV LGILPGA GTQ LP++VGVPAA D++++GR I A++A K+G++D++V     
Sbjct: 120  -VGFPEVTLGILPGARGTQLLPRLVGVPAALDLIISGRHISANEALKLGIIDKIVNSDPI 178

Query: 781  XXXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVE 960
                          E ++ FA+ ++D+    +R   +         S+P +   I+ +  
Sbjct: 179  --------------EESIKFAQRISDQSPESRRICNMP------VPSLPNM-DAIFSEAL 217

Query: 961  EKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQT 1140
             +VRK+  G + +P   +  V+  ++   D G   E +    L  + ++KAL  ++  + 
Sbjct: 218  LQVRKRYPG-WLSPEACVQAVQAAVQYPYDMGSKKEKELGLYLNTSGQAKALQYVFFAER 276

Query: 1141 LCKKNKFGAP 1170
            +   NK+  P
Sbjct: 277  MA--NKWSTP 284


>ref|NP_001033625.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           precursor [Bos taurus].
          Length = 296

 Score =  108 bits (269), Expect = 2e-23
 Identities = 75/238 (31%), Positives = 118/238 (49%), Gaps = 5/238 (2%)
 Frame = +1

Query: 229 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
           G    +A I +N P+++ N LG    S+ +E + ++    Q+R  +  S   G F AGAD
Sbjct: 41  GPNQGIAEILMNRPSAR-NALGNVFVSQLLEALAQLREDRQVRVLIFRSGVKGVFCAGAD 99

Query: 409 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
           +      + + EV    Q  +    ++     P +AA++G  LGGGLELA++C  R+A  
Sbjct: 100 LKEREQMSEA-EVGLFVQRLRGLMTEIAAFPAPTIAAMDGFALGGGLELALACDLRVAAS 158

Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVX 768
               V+G  E   G+LPGAGGTQRLP+ +GV  A +++ TGR +   +A+ +GLV+  V 
Sbjct: 159 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGAQAQALGLVNHAVA 216

Query: 769 XXXXXXXXXXXRTI---EYLEE--VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
                            E L +  +AV  +K   D+ I      G+  +   YA +IP
Sbjct: 217 QNEEGNAAYHRARALAQEILPQAPIAVRLSKVAIDRGIEVDIASGMAIEGICYAQNIP 274


>ref|NP_001020377.2| enoyl-CoA hydratase, mitochondrial precursor [Bos taurus].
          Length = 290

 Score =  105 bits (261), Expect = 1e-22
 Identities = 75/221 (33%), Positives = 113/221 (51%)
 Frame = +1

Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
           M A RA+    R      L CP  + R+F  S+A         G   +V +I++N P + 
Sbjct: 1   MAALRALLPRVRAPLRPWLFCP--VQRSFASSAAFEYIITAKKGRNSNVGLIQLNRPKA- 57

Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
           +N L   L  E  + + + +       A++++     F AGADI  + + T        S
Sbjct: 58  LNALCNGLIVELNQAL-QAFEEDPAVGAIVLTGGEKVFAAGADIKEMQSLTFQN---CYS 113

Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
                 +++L +  KP++AA+NG  LGGG ELA+ C   I    +K   G PE+L+G +P
Sbjct: 114 GGFLSHWDQLTRVKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEILIGTIP 171

Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
           GAGGTQRL + VG   A +M+LTG  I A  AK+ GLV ++
Sbjct: 172 GAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 212


>ref|XP_002695024.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
           taurus].
          Length = 326

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
 Frame = +1

Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSA-- 426
           +++N P  + N + +    E +   N++   S  R  V+IS     F +G D+  +++  
Sbjct: 68  VQLNRPEKR-NAMNKAFWREMVVCFNKIAEDSDCR-VVVISGAGKMFSSGIDLMDMASDL 125

Query: 427 --------CTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
                      S  +  +    Q TF  +EK  KP++AAI+G C+GGG++L  +C  R +
Sbjct: 126 LQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYS 185

Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
           T+D  +     EV +G+    G  QRLPK++G  +   ++  T R + AD+A + GLV +
Sbjct: 186 TRD--SFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSR 243

Query: 760 L 762
           L
Sbjct: 244 L 244


>ref|XP_002701918.1| PREDICTED: enoyl Coenzyme A hydratase 1, peroxisomal isoform 1 [Bos
           taurus].
          Length = 326

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
 Frame = +1

Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSA-- 426
           +++N P  + N + +    E +   N++   S  R  V+IS     F +G D+  +++  
Sbjct: 68  VQLNRPEKR-NAMNKAFWREMVVCFNKIAEDSDCR-VVVISGAGKMFSSGIDLMDMASDL 125

Query: 427 --------CTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
                      S  +  +    Q TF  +EK  KP++AAI+G C+GGG++L  +C  R +
Sbjct: 126 LQPAGDDSARISWHLHSLLTRYQETFSVIEKCPKPVIAAIHGGCIGGGVDLITACDIRYS 185

Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
           T+D  +     EV +G+    G  QRLPK++G  +   ++  T R + AD+A + GLV +
Sbjct: 186 TRD--SFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAYTARKMMADEALESGLVSR 243

Query: 760 L 762
           L
Sbjct: 244 L 244


>ref|NP_001030492.1| enoyl-CoA hydratase domain-containing protein 1 [Bos taurus].
          Length = 306

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 42/174 (24%), Positives = 89/174 (51%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + ++ +N+P SK+N     +  + +E + E+ + ++ +  ++  +K   F +G+D+N + 
Sbjct: 63  IGILTLNNP-SKMNAFSGVMMLQLLEKVIELENWTEGKGLIIRGAK-NTFSSGSDLNAVK 120

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           A  T ++   +    Q T  +  +     VA + G  LGGG E+  +C +R+ T   +  
Sbjct: 121 ALGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGRALGGGAEVTTACDFRLMTTQSEIR 180

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
               E  +GI+P  GG  RL +++G   A  ++     + ++KA  +G+VD ++
Sbjct: 181 FVHKE--MGIIPSWGGATRLVEIIGGRQALKVLSGALKLDSEKALNIGMVDDIL 232


>ref|NP_001039861.1| 3,2-trans-enoyl-CoA isomerase, mitochondrial [Bos taurus].
          Length = 303

 Score = 69.7 bits (169), Expect = 6e-12
 Identities = 50/174 (28%), Positives = 83/174 (47%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           VAV+++ +P   VN L  EL +E +  + ++ +    R  +L S  P  F AG D+  + 
Sbjct: 58  VAVMKLRNP--PVNALSLELLTELVISLEKLENDKTFRGVILTSDCPRVFCAGLDLTEIC 115

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
               +    +  +  Q  + +   S+  +VAAING C  GG  +A+SC  R+   + K  
Sbjct: 116 GRNPAH-CAEYWKAMQELWLRTYLSSLVLVAAINGACPAGGCIIALSCDCRVLADNPKYR 174

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E LLGI+            +G  A+   +  G      +A ++GLVDQ+V
Sbjct: 175 IGLNETLLGIIAPFWLKDTYVNTIGHRASEQALQLGSLFPPAEALQVGLVDQVV 228


>ref|NP_001039878.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Bos
           taurus].
          Length = 386

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 2/179 (1%)
 Frame = +1

Query: 235 KGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADIN 414
           KG   VI +N P   +NTL   +  +    + +     +    ++  +    F AG DI 
Sbjct: 43  KGCAGVITLNRPRF-LNTLTLGMIRQIYAQLKKWEQDPKTFLIIIKGAGEKAFCAGGDIR 101

Query: 415 MLS-ACTTSQEVTQ-ISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
            LS A  T+Q++ Q + +E       ++   KP +A I+G  +GGG+ +++  Q+R+AT 
Sbjct: 102 ALSEARNTNQKMLQDLFREEYILNNAIDSCQKPYIALIHGITMGGGVGVSVHGQFRVAT- 160

Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
            +K+V   PE  +G+ P  GG   LP++ G    F + LTG  ++       G+    V
Sbjct: 161 -EKSVFAMPETAIGLFPDVGGGYFLPRLQGKLGYF-LALTGFRLKGRDVYTAGIATHFV 217


>ref|NP_001157257.1| chromodomain Y-like protein 2 [Bos taurus].
          Length = 505

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 4/174 (2%)
 Frame = +1

Query: 253 IRINSPNSKVNTLGQELHSEFIEVM-NEVWSSSQIRSAVLISSKPGCFIAGADINMLSAC 429
           I ++S  S  N L  E+  E    + N     S++   +L+S+    F +G D + L   
Sbjct: 262 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKL---LLLSAVGSVFCSGLDYSYLIGR 318

Query: 430 TTS---QEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKT 600
            +S   +E T+I++  +   +   +  KPIV AING  LG G  +   C   I    +K 
Sbjct: 319 LSSDRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCD--IVWASEKA 376

Query: 601 VLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
               P   + + P    +   P+++GV  A +M+  GR + A +A   GLV Q+
Sbjct: 377 WFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQV 430


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,019,186
Number of extensions: 1435418
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4904
Number of HSP's successfully gapped: 15
Length of query: 489
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 383
Effective length of database: 14,174,046
Effective search space: 5428659618
Effective search space used: 5428659618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007379
         (1467 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase...   701   0.0  
Alignment   gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase...   684   0.0  
Alignment   gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata...   125   1e-28
Alignment   gi|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mito...   102   1e-21
Alignment   gi|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydr...   101   2e-21
Alignment   gi|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratas...    94   4e-19
Alignment   gi|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzym...    80   7e-15
Alignment   gi|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzym...    75   2e-13
Alignment   gi|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratas...    70   5e-12
Alignment   gi|XP_547179.2| PREDICTED: similar to 3,2-trans-enoyl-CoA isome...    70   7e-12

>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 2
            [Canis familiaris].
          Length = 762

 Score =  701 bits (1808), Expect(2) = 0.0
 Identities = 359/441 (81%), Positives = 389/441 (88%)
 Frame = +1

Query: 100  MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
            MVASRAIGSL R TAS+  RCPGY+CRNFT SSAL +RTHIN+GVKGDVAV+R+NSPNSK
Sbjct: 1    MVASRAIGSLSRATASRMFRCPGYVCRNFTGSSALRSRTHINFGVKGDVAVVRLNSPNSK 60

Query: 280  VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
            VNTL +EL SEF+EVMNE+W+S QIRSAVLIS+KPGCFIAGADINML++C T +EVT+IS
Sbjct: 61   VNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADINMLASCKTHEEVTRIS 120

Query: 460  QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            QE QR FEKLEKSTKPIVAAI+G CLGGGLELAISCQYRIATKD+KTVLGAPEVLLGILP
Sbjct: 121  QEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATKDRKTVLGAPEVLLGILP 180

Query: 640  GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
            GAGGTQRLPKMVG+PAAFDMMLTGR IRAD+AK+MGLVDQLV            RTIEYL
Sbjct: 181  GAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPLGPGLKPPEERTIEYL 240

Query: 820  EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
            EEVAV FAKGL+DKKIS KRDKGLVEKLTSYA+SIPFVRQQ+YKKVEEKVRKQTKGLYPA
Sbjct: 241  EEVAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIPFVRQQVYKKVEEKVRKQTKGLYPA 300

Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
            PLKIIDVVKTGIEQG+DAGYLSESQKFGELAMTKESKALMGLY GQ LCKKNKFGAPQKE
Sbjct: 301  PLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKESKALMGLYHGQVLCKKNKFGAPQKE 360

Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
            VK               QVSVDK LKTILKDA+L  LGRGQ+QVFKGLND V+KKALTSF
Sbjct: 361  VKDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQQQVFKGLNDKVKKKALTSF 420

Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
            ERDS+F +LTGQLDYQG +KA
Sbjct: 421  ERDSIFSNLTGQLDYQGFEKA 441



 Score = 30.4 bits (67), Expect(2) = 0.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 1415 KRHMVIEAVFEELSLKH 1465
            K  MVIEAVFE+LSLKH
Sbjct: 440  KADMVIEAVFEDLSLKH 456


>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 3
            [Canis familiaris].
          Length = 761

 Score =  684 bits (1764), Expect(2) = 0.0
 Identities = 353/441 (80%), Positives = 384/441 (87%)
 Frame = +1

Query: 100  MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
            MVASRAIGSL R TAS+  RCPGY+CRNFT SSAL +RTHIN+GVKGDVAV+R+NSPNSK
Sbjct: 1    MVASRAIGSLSRATASRMFRCPGYVCRNFTGSSALRSRTHINFGVKGDVAVVRLNSPNSK 60

Query: 280  VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
            VNTL +EL SEF+EVMNE+W+S QIRSAVLIS+KPGCFIAGADINML++C T +EVT+IS
Sbjct: 61   VNTLNKELQSEFMEVMNEIWASDQIRSAVLISTKPGCFIAGADINMLASCKTHEEVTRIS 120

Query: 460  QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            QE QR FEKLEKSTKPIVAAI+G CLGGGLELAISCQYRIATKD+KTVLGAPEVLLGILP
Sbjct: 121  QEGQRMFEKLEKSTKPIVAAISGACLGGGLELAISCQYRIATKDRKTVLGAPEVLLGILP 180

Query: 640  GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
            GAGGTQRLPKMVG+PAAFDMMLTGR IRAD+AK+MGLVDQLV            RTIEYL
Sbjct: 181  GAGGTQRLPKMVGLPAAFDMMLTGRNIRADRAKRMGLVDQLVEPLGPGLKPPEERTIEYL 240

Query: 820  EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
            EEVAV FAKGL+DKKIS KRDKGLVEKLTSYA+SIPFVRQQ+YKKVEEKVRKQTKGLYPA
Sbjct: 241  EEVAVNFAKGLSDKKISIKRDKGLVEKLTSYALSIPFVRQQVYKKVEEKVRKQTKGLYPA 300

Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
            PLKIIDVVKTGIEQG+DAGYLSESQKFGELAMTKESKALMGLY GQ LCKKNKFG     
Sbjct: 301  PLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKESKALMGLYHGQVLCKKNKFGG-SLP 359

Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
            V+               QVSVDK LKTILKDA+L  LGRGQ+QVFKGLND V+KKALTSF
Sbjct: 360  VRDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTGLGRGQQQVFKGLNDKVKKKALTSF 419

Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
            ERDS+F +LTGQLDYQG +KA
Sbjct: 420  ERDSIFSNLTGQLDYQGFEKA 440



 Score = 30.4 bits (67), Expect(2) = 0.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 1415 KRHMVIEAVFEELSLKH 1465
            K  MVIEAVFE+LSLKH
Sbjct: 439  KADMVIEAVFEDLSLKH 455


>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
            Coenzyme A dehydrogenase [Canis familiaris].
          Length = 723

 Score =  125 bits (314), Expect = 1e-28
 Identities = 94/292 (32%), Positives = 150/292 (51%), Gaps = 1/292 (0%)
 Frame = +1

Query: 244  VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
            +A+IR+ +P   VN +   +     + + +  +   +++ VL  +  G F AGADI+   
Sbjct: 11   LALIRLRNP--PVNAISTAVLRGIKDGLQKATTDRTVKAIVLCGAD-GKFSAGADIHSFG 67

Query: 424  ACTTSQEVT-QISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKT 600
                S  V   I  E QRT        KP+VAAI G  LGGGLELA+ C YRIA  + + 
Sbjct: 68   EPRKSDFVLGHIVDEIQRT-------EKPVVAAIQGLALGGGLELALGCHYRIAHAEAQ- 119

Query: 601  VLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXX 780
             +G PEV LGILPGA GTQ LP+++GVPAA D++ +GR + AD+A K+G++D++V     
Sbjct: 120  -IGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHVLADEALKLGILDEIVNSDPV 178

Query: 781  XXXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVE 960
                          E A+  A+ ++D+ +  +R             S+P + + I+ +  
Sbjct: 179  --------------EEAIKLAQRISDQSLESRR------LCNKPIQSLPNM-ESIFSEAL 217

Query: 961  EKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKAL 1116
             K++KQ  G   AP   +  V+  +    + G   E + F  L  + +++AL
Sbjct: 218  LKMQKQHPGCL-APETCVRAVQAAVHCPYEVGIQKEKELFMYLQKSGQARAL 268


>ref|XP_537945.2| PREDICTED: similar to Enoyl-CoA hydratase, mitochondrial precursor
           (Short chain enoyl-CoA hydratase) (SCEH) (Enoyl-CoA
           hydratase 1) [Canis familiaris].
          Length = 575

 Score =  102 bits (253), Expect = 1e-21
 Identities = 69/210 (32%), Positives = 107/210 (50%)
 Frame = +1

Query: 133 RFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSKVNTLGQELHSE 312
           R   ++ L  PG +  +      ++T      G   +V +I++N P + +N L   L  E
Sbjct: 298 RAALAKLLHAPGLLTTSCADFQYIITEKK---GKNSNVGLIQLNRPKA-LNALCNGLMME 353

Query: 313 FIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLE 492
             + + E +       A++++     F AGADI  +   T        S +    +++L 
Sbjct: 354 LNQAL-EAFEKDPAVGAIVLTGGEKAFAAGADIKEMQNQTFQD---CYSSKFLSHWDQLA 409

Query: 493 KSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKM 672
           +  KP++AA+NG  LGGG ELA+ C   I    +K     PE+LLG +PGAGGTQRL + 
Sbjct: 410 QVKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFAQPEILLGTIPGAGGTQRLTRA 467

Query: 673 VGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
           VG   A +M+LTG  I A  AK+ GLV ++
Sbjct: 468 VGKSLAMEMVLTGDRISAQDAKQAGLVSKI 497


>ref|XP_533549.2| PREDICTED: similar to Methylglutaconyl-CoA hydratase, mitochondrial
           precursor (AU-specific RNA-binding enoyl-CoA hydratase)
           (AU-binding protein/enoyl-CoA hydratase) [Canis
           familiaris].
          Length = 340

 Score =  101 bits (251), Expect = 2e-21
 Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + V+ IN   +K NT  + L     + ++ + S  ++R+ ++ S  PG F AGAD+    
Sbjct: 90  IVVLGINRAYAK-NTFSKSLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 148

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
               S EV     + +   +++     P +AAI+G  LGGGLELA++C  R+A    K  
Sbjct: 149 KMNPS-EVGPFVSKIRAVIDEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 205

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
           +G  E  L I+PG GGTQRLP+ +G+  A +++ + R +   +AK +GL+   V      
Sbjct: 206 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISH-VLEQNQE 264

Query: 784 XXXXXXRTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
                 + ++   E      VAV  AK   ++ +      GL  +   YA +IP
Sbjct: 265 GDAAYRKALDLAREFLPQGPVAVRVAKLAINQGMEVDLVTGLAIEEACYAQTIP 318


>ref|XP_853370.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
           2 [Canis familiaris].
          Length = 147

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 55/151 (36%), Positives = 83/151 (54%)
 Frame = +1

Query: 259 INSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTS 438
           +N P S  N LG  L ++ +E + ++    Q+R  +  S   G F AGAD+      + +
Sbjct: 1   MNRP-SACNALGNVLVNQLLEALAQLREDQQVRVLLFRSGVKGVFCAGADLKEREQMSEA 59

Query: 439 QEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPE 618
            EV    Q  +    ++     P +AA++G  LGGGLELA++C  R+A      V+G  E
Sbjct: 60  -EVGIFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASS--AVMGLIE 116

Query: 619 VLLGILPGAGGTQRLPKMVGVPAAFDMMLTG 711
              G+LPGAGGTQRLP+ +GV  A +++ TG
Sbjct: 117 TTRGLLPGAGGTQRLPRCIGVALAKELIFTG 147


>ref|XP_533678.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
           protein isoform 1 [Canis familiaris].
          Length = 328

 Score = 79.7 bits (195), Expect = 7e-15
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 11/181 (6%)
 Frame = +1

Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADI-NMLSAC 429
           +++N P  + N + +    E +E  N++      R AV+IS     F AG D+ +M S  
Sbjct: 70  VQLNRPEKR-NAMNKAFWREMVECFNKIAQDPDCR-AVVISGAGKVFTAGIDLMDMASEI 127

Query: 430 TTSQ--EVTQISQEA-------QRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
              Q  +V +IS          Q TF  +EK  KP++AAI+G C+G G++L  +C  R  
Sbjct: 128 LQPQGDDVARISWNLRNLITRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYC 187

Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
            +D        EV +G+    G  QRLPK++G  +   ++  T R + AD+A   GLV +
Sbjct: 188 AQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSR 245

Query: 760 L 762
           +
Sbjct: 246 V 246


>ref|XP_867316.1| PREDICTED: similar to peroxisomal enoyl-coenzyme A hydratase-like
           protein isoform 2 [Canis familiaris].
          Length = 248

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 54/162 (33%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
 Frame = +1

Query: 310 EFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADI-NMLSACTTSQ--EVTQISQEA---- 468
           E +E  N++      R AV+IS     F AG D+ +M S     Q  +V +IS       
Sbjct: 8   EMVECFNKIAQDPDCR-AVVISGAGKVFTAGIDLMDMASEILQPQGDDVARISWNLRNLI 66

Query: 469 ---QRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
              Q TF  +EK  KP++AAI+G C+G G++L  +C  R   +D        EV +G+  
Sbjct: 67  TRYQETFSVIEKCPKPVIAAIHGACIGAGVDLITACDIRYCAQD--AFFQVKEVDIGLAA 124

Query: 640 GAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQL 762
             G  QRLPK++G  +   ++  T R + AD+A   GLV ++
Sbjct: 125 DVGTLQRLPKIIGNQSLVNELAFTCRTMMADEALASGLVSRV 166


>ref|XP_851564.1| PREDICTED: similar to enoyl Coenzyme A hydratase domain containing
           1 isoform 1 [Canis familiaris].
          Length = 307

 Score = 70.1 bits (170), Expect = 5e-12
 Identities = 44/174 (25%), Positives = 91/174 (52%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + ++ +N+P SK+N     +  + +E + E+ + ++ +  ++  +K   F +G+D+N + 
Sbjct: 64  IGILTLNNP-SKMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 121

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           A  T ++   +    Q T  +L +     VA I G  LGGG E+  +C +R+ T D +  
Sbjct: 122 ALATPEDGMALCMFMQNTLTRLMRLPLISVALIQGRALGGGAEVTTACDFRLMTADGEIR 181

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
               E  +GI+P  GG  RL +++G   A  ++     + A +A  +G+V++++
Sbjct: 182 FVHRE--MGIVPSWGGGTRLVELLGARQALKVLSGALPLDAARALSLGMVEEVL 233


>ref|XP_547179.2| PREDICTED: similar to 3,2-trans-enoyl-CoA isomerase, mitochondrial
           precursor (Dodecenoyl-CoA delta-isomerase)
           (D3,D2-enoyl-CoA isomerase) [Canis familiaris].
          Length = 342

 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 49/174 (28%), Positives = 82/174 (47%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           +AV+++  P   VN+L  EL +E +  + ++ +    +  ++ S  PG F AG D+ M  
Sbjct: 97  MAVMKLRKP--PVNSLSLELLTELVISLEKLENDKSFQGVIITSDSPGIFSAGLDL-MEM 153

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
                    +  +  Q  + +L  S   ++ A+NG    GG  LA+SC YRI   + K  
Sbjct: 154 CGRDPAHYAEYWKAVQELWLRLYLSHLVLICAVNGASPAGGCLLALSCDYRILADNPKYT 213

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E  LGI+        L   +G  AA   +  G      +A ++G+VDQ+V
Sbjct: 214 IGLNETQLGIVAPFWFADTLVNTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 267


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,396,111
Number of extensions: 1479490
Number of successful extensions: 4675
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4657
Number of HSP's successfully gapped: 19
Length of query: 489
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 382
Effective length of database: 15,307,552
Effective search space: 5847484864
Effective search space used: 5847484864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007379
         (1467 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri...   703   0.0  
Alignment   gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo...   128   1e-29
Alignment   gi|NP_001185890.1| enoyl-CoA hydratase domain-containing protei...   104   2e-22
Alignment   gi|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial p...   101   2e-21
Alignment   gi|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [H...    99   1e-20
Alignment   gi|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [H...    98   2e-20
Alignment   gi|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi...    82   1e-15
Alignment   gi|NP_001910.2| enoyl-CoA delta isomerase 1, mitochondrial isof...    75   2e-13
Alignment   gi|NP_001002030.1| enoyl-CoA hydratase domain-containing protei...    67   6e-11
Alignment   gi|NP_001132982.1| enoyl-CoA hydratase domain-containing protei...    67   6e-11

>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
            sapiens].
          Length = 763

 Score =  703 bits (1814), Expect(2) = 0.0
 Identities = 363/441 (82%), Positives = 386/441 (87%)
 Frame = +1

Query: 100  MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
            MVA RAIG L RF+A + LR  GYICRNFT SSALLTRTHINYGVKGDVAV+RINSPNSK
Sbjct: 1    MVACRAIGILSRFSAFRILRSRGYICRNFTGSSALLTRTHINYGVKGDVAVVRINSPNSK 60

Query: 280  VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
            VNTL +ELHSEF EVMNE+W+S QIRSAVLISSKPGCFIAGADINML+AC T QEVTQ+S
Sbjct: 61   VNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACKTLQEVTQLS 120

Query: 460  QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            QEAQR  EKLEKSTKPIVAAING+CLGGGLE+AISCQYRIATKD+KTVLG PEVLLG LP
Sbjct: 121  QEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALP 180

Query: 640  GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
            GAGGTQRLPKMVGVPAA DMMLTGR IRAD+AKKMGLVDQLV            RTIEYL
Sbjct: 181  GAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEPLGPGLKPPEERTIEYL 240

Query: 820  EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
            EEVA+TFAKGLADKKISPKRDKGLVEKLT+YAM+IPFVRQQ+YKKVEEKVRKQTKGLYPA
Sbjct: 241  EEVAITFAKGLADKKISPKRDKGLVEKLTAYAMTIPFVRQQVYKKVEEKVRKQTKGLYPA 300

Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
            PLKIIDVVKTGIEQGSDAGYL ESQKFGEL MTKESKALMGLY GQ LCKKNKFGAPQK+
Sbjct: 301  PLKIIDVVKTGIEQGSDAGYLCESQKFGELVMTKESKALMGLYHGQVLCKKNKFGAPQKD 360

Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
            VKH              QVSVDK LKTILKDA+L AL RGQ+QVFKGLND V+KKALTSF
Sbjct: 361  VKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTALDRGQQQVFKGLNDKVKKKALTSF 420

Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
            ERDS+F +LTGQLDYQG +KA
Sbjct: 421  ERDSIFSNLTGQLDYQGFEKA 441



 Score = 30.4 bits (67), Expect(2) = 0.0
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 1415 KRHMVIEAVFEELSLKH 1465
            K  MVIEAVFE+LSLKH
Sbjct: 440  KADMVIEAVFEDLSLKH 456


>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
          Length = 723

 Score =  128 bits (322), Expect = 1e-29
 Identities = 96/309 (31%), Positives = 156/309 (50%)
 Frame = +1

Query: 244  VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
            +A+IR+ +P   VN +   L  +  E + +      I+ A++I    G F AGADI   S
Sbjct: 11   LALIRLRNP--PVNAISTTLLRDIKEGLQKAVIDHTIK-AIVICGAEGKFSAGADIRGFS 67

Query: 424  ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
            A  T               ++++++ KP+VAAI G   GGGLELA+ C YRIA  + +  
Sbjct: 68   APRT------FGLTLGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQ-- 119

Query: 604  LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
            +G PEV LG+LPGA GTQ LP++ GVPAA D++ +GR I AD+A K+G++D++V      
Sbjct: 120  VGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVVNSDPV- 178

Query: 784  XXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEE 963
                         E A+ FA+ ++D+ +  +R             S+P +   I+ +   
Sbjct: 179  -------------EEAIRFAQRVSDQPLESRR------LCNKPIQSLPNM-DSIFSEALL 218

Query: 964  KVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTL 1143
            K+R+Q  G   A    +  V+  ++   + G   E + F  L  + +++AL   +  +  
Sbjct: 219  KMRRQHPGCL-AQEACVRAVQAAVQYPYEVGIKKEEELFLYLLQSGQARALQYAFFAER- 276

Query: 1144 CKKNKFGAP 1170
             K NK+  P
Sbjct: 277  -KANKWSTP 284


>ref|NP_001185890.1| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           isoform 1 [Homo sapiens].
          Length = 292

 Score =  104 bits (259), Expect = 2e-22
 Identities = 62/174 (35%), Positives = 95/174 (54%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           +  I +N P+++ N LG    SE +E + ++    Q+R  +  S   G F AGAD+    
Sbjct: 42  ITEILMNRPSAR-NALGNVFVSELLETLAQLREDRQVRVLLFRSGVKGVFCAGADLKERE 100

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
             + + EV    Q  +     +     P +AA++G  LGGGLELA++C  R+A      V
Sbjct: 101 QMSEA-EVGVFVQRLRGLMNDIAAFPAPTIAAMDGFALGGGLELALACDLRVAASS--AV 157

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E   G+LPGAGGTQRLP+ +GV  A +++ TGR +   +A  +GLV+  V
Sbjct: 158 MGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGTEAHVLGLVNHAV 211


>ref|NP_001689.1| methylglutaconyl-CoA hydratase, mitochondrial precursor [Homo
           sapiens].
          Length = 339

 Score =  101 bits (251), Expect = 2e-21
 Identities = 58/174 (33%), Positives = 96/174 (55%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + V+ IN    K N+L + L     + ++ + S  ++R+ ++ S  PG F AGAD+    
Sbjct: 89  IVVLGINRAYGK-NSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE-R 146

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           A  +S EV     + +     +     P +AAI+G  LGGGLELA++C  R+A    K  
Sbjct: 147 AKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 204

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E  L I+PG GGTQRLP+ +G+  A +++ + R +   +AK +GL+  ++
Sbjct: 205 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 258


>ref|NP_004083.3| enoyl-CoA hydratase, mitochondrial precursor [Homo sapiens].
          Length = 290

 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 70/221 (31%), Positives = 108/221 (48%)
 Frame = +1

Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
           M A R + S  R      +RCP +  R F   +          G    V +I++N P + 
Sbjct: 1   MAALRVLLSCVRGPLRPPVRCPAW--RPFASGANFEYIIAEKRGKNNTVGLIQLNRPKA- 57

Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
           +N L   L  E  + + + +       A++++     F AGADI  +   +        S
Sbjct: 58  LNALCDGLIDELNQAL-KTFEEDPAVGAIVLTGGDKAFAAGADIKEMQNLSFQD---CYS 113

Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            +  + ++ L +  KP++AA+NG   GGG ELA+ C   I    +K     PE+L+G +P
Sbjct: 114 SKFLKHWDHLTQVKKPVIAAVNGYAFGGGCELAMMCD--IIYAGEKAQFAQPEILIGTIP 171

Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
           GAGGTQRL + VG   A +M+LTG  I A  AK+ GLV ++
Sbjct: 172 GAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 212


>ref|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [Homo sapiens].
          Length = 627

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 68/211 (32%), Positives = 110/211 (52%)
 Frame = +1

Query: 538  GGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRG 717
            GGGLELA+ C YRIA  + +  +G PEV LG+LPGA GTQ LP++ GVPAA D++ +GR 
Sbjct: 4    GGGLELALGCHYRIAHAEAQ--VGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRR 61

Query: 718  IRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVE 897
            I AD+A K+G++D++V                   E A+ FA+ ++D+ +  +R      
Sbjct: 62   ILADEALKLGILDKVVNSDPV--------------EEAIRFAQRVSDQPLESRR------ 101

Query: 898  KLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQK 1077
                   S+P +   I+ +   K+R+Q  G   A    +  V+  ++   + G   E + 
Sbjct: 102  LCNKPIQSLPNM-DSIFSEALLKMRRQHPGCL-AQEACVRAVQAAVQYPYEVGIKKEEEL 159

Query: 1078 FGELAMTKESKALMGLYRGQTLCKKNKFGAP 1170
            F  L  + +++AL   +  +   K NK+  P
Sbjct: 160  FLYLLQSGQARALQYAFFAER--KANKWSTP 188


>ref|NP_001389.2| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
           precursor [Homo sapiens].
          Length = 328

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 28/249 (11%)
 Frame = +1

Query: 100 MVASRAIGSL--RRFTASQTLRCPGY-ICRNFTRSSALLTRTHINYGVKGD--------- 243
           +VASR +  L  RR T S     PG  I    T SSA    + +  G   D         
Sbjct: 5   IVASRRLRDLLTRRLTGSNY---PGLSISLRLTGSSAQEEASGVALGEAPDHSYESLRVT 61

Query: 244 -----VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
                V  +++N PN + N + +    E +E  N++   +  R AV+IS     F AG D
Sbjct: 62  SAQKHVLHVQLNRPNKR-NAMNKVFWREMVECFNKISRDADCR-AVVISGAGKMFTAGID 119

Query: 409 INMLSA----------CTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELA 558
           +  +++             S  +  I    Q TF  +E+  KP++AA++G C+GGG++L 
Sbjct: 120 LMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDLV 179

Query: 559 ISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKA 735
            +C  R   +D        EV +G+    G  QRLPK++G  +   ++  T R + AD+A
Sbjct: 180 TACDIRYCAQD--AFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEA 237

Query: 736 KKMGLVDQL 762
              GLV ++
Sbjct: 238 LGSGLVSRV 246


>ref|NP_001910.2| enoyl-CoA delta isomerase 1, mitochondrial isoform 1 precursor
           [Homo sapiens].
          Length = 302

 Score = 74.7 bits (182), Expect = 2e-13
 Identities = 50/174 (28%), Positives = 86/174 (49%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           VAV++  +P   VN+L  E  +E +  + ++ +    R  +L S +PG F AG D+  + 
Sbjct: 57  VAVMKFKNP--PVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMC 114

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
             + +       +  Q  + +L +S   +V+AING C  GG  +A++C YRI   + +  
Sbjct: 115 GRSPAH-YAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYC 173

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E  LGI+        L   +G  AA   +  G      +A ++G+VDQ+V
Sbjct: 174 IGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVGIVDQVV 227


>ref|NP_001002030.1| enoyl-CoA hydratase domain-containing protein 1 isoform 1 [Homo
           sapiens].
          Length = 301

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 40/174 (22%), Positives = 89/174 (51%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + ++ +N+P S++N     +  + +E + E+ + ++ +  ++  +K   F +G+D+N + 
Sbjct: 58  IGILTLNNP-SRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 115

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           +  T ++   +    Q T  +  +     VA + G  LGGG E   +C +R+ T + K  
Sbjct: 116 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 175

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
               E  +GI+P  GGT RL +++G   A  ++     + +  A  +G+V++++
Sbjct: 176 FVHKE--MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL 227


>ref|NP_001132982.1| enoyl-CoA hydratase domain-containing protein 1 isoform 5 [Homo
           sapiens].
          Length = 307

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 40/174 (22%), Positives = 89/174 (51%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + ++ +N+P S++N     +  + +E + E+ + ++ +  ++  +K   F +G+D+N + 
Sbjct: 64  IGILTLNNP-SRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAK-NTFSSGSDLNAVK 121

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           +  T ++   +    Q T  +  +     VA + G  LGGG E   +C +R+ T + K  
Sbjct: 122 SLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIR 181

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
               E  +GI+P  GGT RL +++G   A  ++     + +  A  +G+V++++
Sbjct: 182 FVHKE--MGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVL 233


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,372,941
Number of extensions: 1452077
Number of successful extensions: 4285
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 4257
Number of HSP's successfully gapped: 28
Length of query: 489
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 382
Effective length of database: 14,770,016
Effective search space: 5642146112
Effective search space used: 5642146112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007379
         (1467 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri...   672   0.0  
Alignment   gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].      124   2e-28
Alignment   gi|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2...   112   1e-24
Alignment   gi|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [M...   102   8e-22
Alignment   gi|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial p...   100   4e-21
Alignment   gi|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mi...    80   5e-15
Alignment   gi|NP_001103665.1| enoyl-CoA hydratase domain-containing protei...    73   7e-13
Alignment   gi|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1...    73   7e-13
Alignment   gi|NP_034153.2| enoyl-CoA delta isomerase 1, mitochondrial prec...    70   3e-12
Alignment   gi|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondria...    63   5e-10

>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
            musculus].
          Length = 763

 Score =  672 bits (1733), Expect(2) = 0.0
 Identities = 342/441 (77%), Positives = 380/441 (86%)
 Frame = +1

Query: 100  MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
            MVASRAIGSL RF+A + LR  G ICR+FT SSALLTRTHINYGVKGDVAVIRINSPNSK
Sbjct: 1    MVASRAIGSLSRFSAFRILRSRGCICRSFTTSSALLTRTHINYGVKGDVAVIRINSPNSK 60

Query: 280  VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
            VNTL +E+ SEFIEVMNE+W++ QIRSAVLISSKPGCF+AGADINMLS+CTT QE T+IS
Sbjct: 61   VNTLNKEVQSEFIEVMNEIWANDQIRSAVLISSKPGCFVAGADINMLSSCTTPQEATRIS 120

Query: 460  QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            QE QR FEKLEKS KP+VAAI+G+CLGGGLELAI+CQYRIATKD+KTVLG PEVLLGILP
Sbjct: 121  QEGQRMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILP 180

Query: 640  GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
            GAGGTQRLPKMVGVPAAFDMMLTGR IRAD+AKKMGLVDQLV            RTIEYL
Sbjct: 181  GAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQLVEPLGPGIKSPEERTIEYL 240

Query: 820  EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
            EEVAV FAKGLAD+K+S K+ KGLVEKLT+YAM++PFVRQQ+YK VEEKV+KQTKGLYPA
Sbjct: 241  EEVAVNFAKGLADRKVSAKQSKGLVEKLTTYAMTVPFVRQQVYKTVEEKVKKQTKGLYPA 300

Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
            PLKIID VK G+EQGSDAGYL+ESQKFGELA+TKESKALMGLY GQ LCKKNKFGAPQK 
Sbjct: 301  PLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKESKALMGLYNGQVLCKKNKFGAPQKN 360

Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
            V+               QVSVDK LKT+LKD ++  LGRGQ+QVFKGLND V+KKALTSF
Sbjct: 361  VQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTGLGRGQQQVFKGLNDKVKKKALTSF 420

Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
            ERDS+F +L GQLDY+G +KA
Sbjct: 421  ERDSIFSNLIGQLDYKGFEKA 441



 Score = 27.7 bits (60), Expect(2) = 0.0
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 1415 KRHMVIEAVFEELSLKH 1465
            K  MVIEAVFE+L +KH
Sbjct: 440  KADMVIEAVFEDLGVKH 456


>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
          Length = 718

 Score =  124 bits (311), Expect = 2e-28
 Identities = 99/309 (32%), Positives = 154/309 (49%)
 Frame = +1

Query: 244  VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
            +A+IR+ +P   VN +   + +E    + +      +R+ V+  +    F AGADI+   
Sbjct: 11   LAMIRLCNP--PVNAISPTVITEVRNGLQKASLDHTVRAIVICGANDN-FCAGADIHGFK 67

Query: 424  ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
            +  T   +  +  E QR         KP+VAAI G  LGGGLELA+ C YRIA  + K  
Sbjct: 68   S-PTGLTLGSLVDEIQRY-------QKPVVAAIQGVALGGGLELALGCHYRIA--NAKAR 117

Query: 604  LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
            +G PEV+LGILPGA GTQ LP++VGVP A D++ +GR I  D+A K+G++D +V      
Sbjct: 118  VGFPEVMLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVVVKSDPV- 176

Query: 784  XXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEE 963
                         E A+ FA+ +  K I P+R       L     S+P +   ++ +   
Sbjct: 177  -------------EEAIKFAQTVIGKPIEPRR------ILNKPVPSLPNM-DSVFAEAIA 216

Query: 964  KVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTL 1143
            KVRKQ  G   AP   +  V+  ++   +     E++ F  L  + +++AL   +  +  
Sbjct: 217  KVRKQYPGRL-APETCVRSVQASVKHPYEVAIKEEAKLFMYLRGSGQARALQYAFFAEK- 274

Query: 1144 CKKNKFGAP 1170
               NK+  P
Sbjct: 275  -SANKWSTP 282


>ref|NP_081004.2| enoyl-CoA hydratase domain-containing protein 2, mitochondrial
           precursor [Mus musculus].
          Length = 296

 Score =  112 bits (279), Expect = 1e-24
 Identities = 76/239 (31%), Positives = 118/239 (49%), Gaps = 6/239 (2%)
 Frame = +1

Query: 229 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
           G    +  I +N PN++ N LG    SE +E + ++    Q+R  +  S+  G F AGAD
Sbjct: 41  GPNQGITEILMNRPNAR-NALGNVFVSELLEALAQLREDQQVRVLLFRSAVKGVFCAGAD 99

Query: 409 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
           +      +   EV    Q  +    ++     P +AA++G  LGGGLELA++C  RIA  
Sbjct: 100 LKEREQMS-DVEVGTFVQRLRGLMSEIAAFPVPTIAAMDGFALGGGLELALACDLRIAAS 158

Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVX 768
               V+G  E   G+LPGAGGTQRLP+ +GV  A +++ TGR +   +A+++GLV+  V 
Sbjct: 159 S--AVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAV- 215

Query: 769 XXXXXXXXXXXRTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
                      R +   +E      +AV   K   D+ +      G+  +   YA +IP
Sbjct: 216 AQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNIP 274


>ref|NP_444349.1| enoyl-CoA hydratase, mitochondrial precursor [Mus musculus].
          Length = 290

 Score =  102 bits (254), Expect = 8e-22
 Identities = 73/221 (33%), Positives = 109/221 (49%)
 Frame = +1

Query: 100 MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
           M A RA+      +   ++RCP    R F   +          G    V +I++N P + 
Sbjct: 1   MAALRALLPRACSSLLSSVRCPEL--RRFASGANFQYIITEKKGKNSSVGLIQLNRPKA- 57

Query: 280 VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
           +N L   L  E  + + E +       A++++     F AGADI  +   T        S
Sbjct: 58  LNALCNGLIEELNQAL-ETFEQDPAVGAIVLTGGDKAFAAGADIKEMQNRTFQD---CYS 113

Query: 460 QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            +    ++ + +  KP++AA+NG  LGGG ELA+ C   I    +K   G PE+LLG +P
Sbjct: 114 SKFLSHWDHITRVKKPVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEILLGTIP 171

Query: 640 GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 762
           GAGGTQRL + VG   A +M+LTG  I A  AK+ GLV ++
Sbjct: 172 GAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKI 212


>ref|NP_057918.2| methylglutaconyl-CoA hydratase, mitochondrial precursor [Mus
           musculus].
          Length = 314

 Score =  100 bits (248), Expect = 4e-21
 Identities = 58/174 (33%), Positives = 94/174 (54%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + V+ IN    K N L + L     + ++ + S  ++R+ ++ S  PG F AGAD+    
Sbjct: 64  IVVLGINRAYGK-NALSKNLLKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKE-R 121

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           A   S EV     + +     +     P +AAI+G  LGGGLELA++C  R+A    K  
Sbjct: 122 AKMHSSEVGPFVSKIRSVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 179

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E  L I+PG GGTQRLP+ +G+  A +++ + R +   +AK +GL+  ++
Sbjct: 180 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVL 233


>ref|NP_058052.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial
           precursor [Mus musculus].
          Length = 327

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 11/181 (6%)
 Frame = +1

Query: 253 IRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS--- 423
           +++N P  + N + +    E +E   ++   S  R AV++S     F +G D+  ++   
Sbjct: 69  VQLNRPEKR-NAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASEL 126

Query: 424 -------ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIA 582
                  A   +  +  +  + Q+TF  +EK  KP++AAI+G C+GGG++L  +C  R  
Sbjct: 127 MQPSGDDAARIAWYLRDLISKYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLVSACDIRYC 186

Query: 583 TKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAKKMGLVDQ 759
           T+D        EV +G+    G  QRLPK++G  +   ++  + R + AD+A   GLV +
Sbjct: 187 TQD--AFFQIKEVDMGLAADVGTLQRLPKVIGNQSLVNELTFSARKMMADEALDSGLVSR 244

Query: 760 L 762
           +
Sbjct: 245 V 245


>ref|NP_001103665.1| enoyl-CoA hydratase domain-containing protein 1 isoform b [Mus
           musculus].
          Length = 299

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 43/174 (24%), Positives = 93/174 (53%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + ++ +N+PN K+N     +  + +E + E+ + ++ +  ++  +K   F +G+D+N + 
Sbjct: 56  IGILTLNNPN-KMNAFSGVMMLQLLERVIELENWTEGKGLIIHGAK-NTFCSGSDLNAVK 113

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           A +T +    +S   Q T  +  +     VA + G  +GGG EL  +C +R+ T++  +V
Sbjct: 114 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEE--SV 171

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +      +GI+P  GGT RL +++G   A  ++     + + +A  +GL D+++
Sbjct: 172 IRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVL 225


>ref|NP_080131.4| enoyl-CoA hydratase domain-containing protein 1 isoform a [Mus
           musculus].
          Length = 322

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 43/174 (24%), Positives = 93/174 (53%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + ++ +N+PN K+N     +  + +E + E+ + ++ +  ++  +K   F +G+D+N + 
Sbjct: 79  IGILTLNNPN-KMNAFSGVMMLQLLERVIELENWTEGKGLIIHGAK-NTFCSGSDLNAVK 136

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
           A +T +    +S   Q T  +  +     VA + G  +GGG EL  +C +R+ T++  +V
Sbjct: 137 ALSTPESGVALSMFMQNTLTRFMRLPLISVALVQGWAMGGGAELTTACDFRLMTEE--SV 194

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +      +GI+P  GGT RL +++G   A  ++     + + +A  +GL D+++
Sbjct: 195 IRFVHKEMGIVPSWGGTSRLVEIIGSRQALKVLSGTLKLDSKEALNIGLTDEVL 248


>ref|NP_034153.2| enoyl-CoA delta isomerase 1, mitochondrial precursor [Mus
           musculus].
          Length = 289

 Score = 70.5 bits (171), Expect = 3e-12
 Identities = 51/174 (29%), Positives = 83/174 (47%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           VAV+++ +P   VN+L  E  +EF   + ++ +   IR  +L S  PG F AG D+  + 
Sbjct: 44  VAVMKLRNP--PVNSLSLECLTEFTISLEKLENDKSIRGVILTSECPGIFSAGLDLLEMY 101

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
               +    +  +  Q  + +L  S   +V+AING    GG  LA+ C YR+   + K  
Sbjct: 102 GRNPAH-YAEYWKNVQELWLRLYTSNMILVSAINGASPAGGCLLALCCDYRVMADNPKYT 160

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E LLGI+            +G   A   +  G      +A K+G+VD++V
Sbjct: 161 IGLNESLLGIVAPFWFKDMYVNTIGHREAERALQLGTLFSPAEALKVGVVDEVV 214


>ref|NP_666220.1| 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial precursor [Mus
           musculus].
          Length = 385

 Score = 63.2 bits (152), Expect = 5e-10
 Identities = 51/180 (28%), Positives = 84/180 (46%), Gaps = 3/180 (1%)
 Frame = +1

Query: 235 KGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPG-CFIAGADI 411
           +G   VI +N P   +N L   +  +    + + W        ++I    G  F AG DI
Sbjct: 42  RGCGGVITLNRPKF-LNALSLNMIRQIYPQL-KTWEQDPDTFLIIIKGAGGKAFCAGGDI 99

Query: 412 NMLS-ACTTSQEVTQ-ISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIAT 585
             LS A    Q +TQ + +E       +    KP VA I+G  +GGG+ L++  Q+R+AT
Sbjct: 100 KALSEAKKARQNLTQDLFREEYILNNAIASCQKPYVALIDGITMGGGVGLSVHGQFRVAT 159

Query: 586 KDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
             ++++   PE  +G+ P  GG   LP++ G    F + LTG  ++     + G+    V
Sbjct: 160 --ERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGYF-LALTGYRLKGRDVHRAGIATHFV 216


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,991,758
Number of extensions: 1219218
Number of successful extensions: 3911
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3890
Number of HSP's successfully gapped: 16
Length of query: 489
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 384
Effective length of database: 12,463,779
Effective search space: 4786091136
Effective search space used: 4786091136
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007379
         (1467 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri...   786   0.0  
Alignment   gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [...   130   2e-30
Alignment   gi|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-contai...   105   8e-23
Alignment   gi|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, m...   100   4e-21
Alignment   gi|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scro...    97   2e-20
Alignment   gi|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase,...    80   2e-15
Alignment   gi|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondria...    80   2e-15
Alignment   gi|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945...    53   5e-07
Alignment   gi|XP_001927544.3| PREDICTED: chromodomain Y-like protein, part...    49   7e-06

>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
          Length = 763

 Score =  786 bits (2029), Expect(2) = 0.0
 Identities = 409/441 (92%), Positives = 412/441 (93%)
 Frame = +1

Query: 100  MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 279
            MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK
Sbjct: 1    MVASRAIGSLRRFTASQTLRCPGYICRNFTRSSALLTRTHINYGVKGDVAVIRINSPNSK 60

Query: 280  VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 459
            VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS
Sbjct: 61   VNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQIS 120

Query: 460  QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 639
            QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP
Sbjct: 121  QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILP 180

Query: 640  GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYL 819
            GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV            RTIEYL
Sbjct: 181  GAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVEPLGPGLKPPEERTIEYL 240

Query: 820  EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 999
            EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA
Sbjct: 241  EEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEEKVRKQTKGLYPA 300

Query: 1000 PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 1179
            PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE
Sbjct: 301  PLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTLCKKNKFGAPQKE 360

Query: 1180 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQEQVFKGLND*VRKKALTSF 1359
            VKH              QVSVDKHLKTILKDASLPALGRGQ+QVFKGLND VRKKALTSF
Sbjct: 361  VKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKKALTSF 420

Query: 1360 ERDSLFQHLTGQLDYQGLKKA 1422
            ERDSLF +LTGQLDYQG +KA
Sbjct: 421  ERDSLFSNLTGQLDYQGFEKA 441



 Score = 31.6 bits (70), Expect(2) = 0.0
 Identities = 15/17 (88%), Positives = 15/17 (88%)
 Frame = +2

Query: 1415 KRHMVIEAVFEELSLKH 1465
            K  MVIEAVFEELSLKH
Sbjct: 440  KADMVIEAVFEELSLKH 456


>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
          Length = 723

 Score =  130 bits (326), Expect = 2e-30
 Identities = 95/309 (30%), Positives = 158/309 (51%)
 Frame = +1

Query: 244  VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
            +A++R+ +P   VN L   +     E + +  +   ++ A++I    G F AGADI+  S
Sbjct: 11   LALLRLRNP--PVNALSVSVLHGIKEGLQKALTDHTVK-AIVICGTDGIFSAGADIHGFS 67

Query: 424  ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
            A  TS              +K+++  KP+VAAI G  LGGGLELA+ C YRIA  + +  
Sbjct: 68   AHKTSDLTLG------DIVDKIQRYEKPVVAAIQGLALGGGLELALGCHYRIAHAEAQ-- 119

Query: 604  LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
            +G PEV LGILPGA GTQ LP+++GVPAA D++ +GR I A++A+K+G++D++V      
Sbjct: 120  VGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHISANEARKLGILDEVVNSDPV- 178

Query: 784  XXXXXXRTIEYLEEVAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIPFVRQQIYKKVEE 963
                         E A+ FA+ + D+ +  +R       + + ++        I+ +   
Sbjct: 179  -------------EEAIRFAQRVLDQTLESRR-------ICNKSVQSLSNMDTIFSEALL 218

Query: 964  KVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKESKALMGLYRGQTL 1143
            K+RKQ  G   A    +  V+  ++   + G   E + F  L  + +++AL   +  +  
Sbjct: 219  KMRKQYPGCL-AQETCVRAVQAAVQYPYETGIKKEEELFMYLQKSGQARALQYAFLAER- 276

Query: 1144 CKKNKFGAP 1170
               NK+  P
Sbjct: 277  -SANKWSTP 284


>ref|XP_003128050.2| PREDICTED: enoyl-CoA hydratase domain-containing protein 2,
           mitochondrial-like isoform 1 [Sus scrofa].
          Length = 275

 Score =  105 bits (261), Expect = 8e-23
 Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 6/234 (2%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           +  I +N P+++ N LG    S+ +E + ++     +R  +  S   G F AGAD+    
Sbjct: 25  ITEILMNRPSAR-NALGNVFVSQLLEALAQLREDRHVRVLIFRSGVKGVFCAGADLKERE 83

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
             + + EV    Q  +    ++     P +AA++G  LGGGLELA++C  R+A      V
Sbjct: 84  QMSEA-EVGVFVQRLRGLMNEIAAFPAPTIAAMDGFALGGGLELALACDLRVAASS--AV 140

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVXXXXXX 783
           +G  E   G+LPGAGGTQRLP+ +GV  A +++ TGR +   +A+ +GLV+  V      
Sbjct: 141 MGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLSGMQAQALGLVNHAV-AQNEE 199

Query: 784 XXXXXXRTIEYLEE------VAVTFAKGLADKKISPKRDKGLVEKLTSYAMSIP 927
                 R +   +E      +AV   K   D+ I      G+  +   YA +IP
Sbjct: 200 GNAAYHRALALAQEILPQAPIAVRLGKLAIDRGIEVDIASGMAIEGICYAQNIP 253


>ref|XP_001928827.3| PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial [Sus
           scrofa].
          Length = 338

 Score = 99.8 bits (247), Expect = 4e-21
 Identities = 57/174 (32%), Positives = 97/174 (55%)
 Frame = +1

Query: 244 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLS 423
           + V+ IN   +K N+L + L     + ++ + S  ++R+ ++ S  PG F AGAD+    
Sbjct: 88  IVVLGINRAYAK-NSLSKNLVKMLSKAVDALKSDKKVRTIIVRSEVPGIFCAGADLKERV 146

Query: 424 ACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTV 603
              +S EV     + +    ++     P +AAI+G  LGGGLELA++C  R+A    K  
Sbjct: 147 KMHSS-EVGPFVSKLRAVINEIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAK-- 203

Query: 604 LGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLV 765
           +G  E  L I+PG GGTQRLP+ +G+  A +++ + R +   +AK +GL+  ++
Sbjct: 204 MGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVL 257


>ref|NP_001177104.1| enoyl-CoA hydratase, mitochondrial [Sus scrofa].
          Length = 290

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 78/253 (30%), Positives = 120/253 (47%), Gaps = 3/253 (1%)
 Frame = +1

Query: 229 GVKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD 408
           G   +V +I++N P + +N L + L  E  + + + +       A++++     F AGAD
Sbjct: 42  GKSSNVGLIQLNRPKA-LNALCKGLILELNQAL-QAFEEDPAVGAIVLTGGEKAFAAGAD 99

Query: 409 INMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAISCQYRIATK 588
           I  +   T        S      ++ L +  KP++AA+NG  LGGG ELA+ C   I   
Sbjct: 100 IKEMQNQTFQD---CYSGGFLSHWDHLSRVRKPVIAAVNGYALGGGCELAMMCD--IIYA 154

Query: 589 DKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQLVX 768
            +K   G PE+LLG +PG GGTQRL + VG     +M+LTG  I A +AK+ GLV ++  
Sbjct: 155 GEKAQFGQPEILLGTIPGTGGTQRLTRAVGKSLTMEMVLTGDRISAQEAKQAGLVSKIF- 213

Query: 769 XXXXXXXXXXXRTIEYLEEVAVTFAKGLAD-KKISPKRDKGLVEKL--TSYAMSIPFVRQ 939
                        +E L E A+  A+ +A   KI     K  V     TS A  +   ++
Sbjct: 214 ------------PVETLVEEAIQCAEKIASYSKIVTAMAKESVNAAFETSLAEGLKLEKK 261

Query: 940 QIYKKVEEKVRKQ 978
             Y     + RK+
Sbjct: 262 LFYSTFATEDRKE 274


>ref|NP_001038072.1| delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Sus
           scrofa].
          Length = 322

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 11/188 (5%)
 Frame = +1

Query: 232 VKGDVAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGAD- 408
           V+  V  +++N P  + N + +    E +   N++      R AV+IS     F +G D 
Sbjct: 57  VQKHVLHVQLNRPEKR-NAMNRAFWREMVVCFNKIAQDPDCR-AVVISGAGKMFTSGIDL 114

Query: 409 INMLSACTTSQ--EVTQIS-------QEAQRTFEKLEKSTKPIVAAINGTCLGGGLELAI 561
           ++M S     Q  +V +IS        + Q TF  +EK  KP++AAI+G C+GGG++L  
Sbjct: 115 VDMASDIFQPQGEDVARISWHLHNLISKYQETFSVIEKCPKPVIAAIHGGCIGGGVDLIT 174

Query: 562 SCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAF-DMMLTGRGIRADKAK 738
           +C  R   +D        EV +G+    G  QRLPK++G  +   ++  T R + AD+A 
Sbjct: 175 ACDIRYCAQD--AFFQVKEVDIGLAADVGTLQRLPKIIGNQSLVNELAFTARKMMADEAL 232

Query: 739 KMGLVDQL 762
             GLV ++
Sbjct: 233 NSGLVSRI 240


>ref|XP_003362049.1| PREDICTED: enoyl-CoA hydratase, mitochondrial-like [Sus scrofa].
          Length = 341

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 3/209 (1%)
 Frame = +1

Query: 361 AVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAAINGTCLG 540
           A++++     F AGADI  +   T        S      ++ L +  KP++AA+NG  LG
Sbjct: 135 AIVLTGGEKAFAAGADIKEMQNQTFQD---CYSGGFLSHWDHLSRVRKPVIAAVNGYALG 191

Query: 541 GGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGI 720
           GG ELA+ C   I    +K   G PE+L    P  GGTQRL + VG     +M+LTG  I
Sbjct: 192 GGCELAMMCD--IIYAGEKAQFGQPELLSETCPRTGGTQRLTRAVGKSLTMEMVLTGDRI 249

Query: 721 RADKAKKMGLVDQLVXXXXXXXXXXXXRTIEYLEEVAVTFAKGLAD-KKISPKRDKGLVE 897
            A +AK+ GLV ++               +E L E A+  A+ +A   KI     K  V 
Sbjct: 250 SAQEAKQAGLVSKIF-------------PVETLVEEAIQCAEKIASYSKIVTAMAKESVN 296

Query: 898 KL--TSYAMSIPFVRQQIYKKVEEKVRKQ 978
               TS A  +   ++  Y     + RK+
Sbjct: 297 AAFETSLAEGLKLEKKLFYSTFATEDRKE 325


>ref|XP_003130864.2| PREDICTED: hypothetical protein LOC100513945 [Sus scrofa].
          Length = 845

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
 Frame = +1

Query: 340  SSSQIRSAVLISSKPGCFIAGADINMLSACTTSQEVTQISQEAQRTFEKLEKSTKPIVAA 519
            + S+    ++IS++   F +G D+  L+A        ++ +        ++    PI+A 
Sbjct: 631  AESRDLKVIVISAEGPVFSSGHDLKELTAEQGPDYHAEVFRACSEVMMLIQNHPVPIIAM 690

Query: 520  INGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGIL---PGAGGTQRLPKMVGVPAA 690
            +NG     G +L  SC   IA    K+    P V +G+    PG    + LP+ V    A
Sbjct: 691  VNGLATAAGCQLVASCD--IAVASDKSSFATPGVTIGLFCSTPGVAVGRALPRKV----A 744

Query: 691  FDMMLTGRGIRADKAKKMGLVDQLV 765
             +M+ TG  + A +A   GL+ ++V
Sbjct: 745  LEMLFTGEPMSAQEALLHGLLSRVV 769


>ref|XP_001927544.3| PREDICTED: chromodomain Y-like protein, partial [Sus scrofa].
          Length = 182

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 28/87 (32%), Positives = 44/87 (50%)
 Frame = +1

Query: 502 KPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGV 681
           KPI+ A+NG  +G G  +   C   +   ++K     P    G  P    T   PK++G 
Sbjct: 23  KPIIVAVNGPAIGLGASILPLCD--VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGG 80

Query: 682 PAAFDMMLTGRGIRADKAKKMGLVDQL 762
            +A +M+L+GR + A +A   GLV Q+
Sbjct: 81  ASANEMLLSGRKLTAQEACGKGLVSQV 107


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,797,902
Number of extensions: 922786
Number of successful extensions: 3093
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3082
Number of HSP's successfully gapped: 10
Length of query: 489
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,779,541
Effective search space: 3388902826
Effective search space used: 3388902826
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007379
         (1467 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                         323   2e-85

>Sscrofa_Chr03 
||          Length = 144787322

 Score =  323 bits (163), Expect = 2e-85
 Identities = 166/167 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1         gtacgtcggacgcctggccagggccagccggcgggaagaaaagtcctctggctgccacca 60
                 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 119690599 gtacgtcggacgcctggccaggggcagccggcgggaagaaaagtcctctggctgccacca 119690658

                                                                             
Query: 61        gctccagcaactttccagtttcgtcctctcctgctcaagatggtcgcctcccgggcaata 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119690659 gctccagcaactttccagtttcgtcctctcctgctcaagatggtcgcctcccgggcaata 119690718

                                                                
Query: 121       ggcagcctccgtcgcttcactgcctcccagacgctccgctgcccagg 167
                 |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119690719 ggcagcctccgtcgcttcactgcctcccagacgctccgctgcccagg 119690765



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                             
Query: 414       catgttatcagcttgcacgacctctcaagaggtaacgcaaatatcacaggaagcacagag 473
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119747871 catgttatcagcttgcacgacctctcaagaggtaacgcaaatatcacaggaagcacagag 119747930

                                                                             
Query: 474       aacatttgagaaacttgagaagtccacaaagcctattgtggctgccatcaatggaacctg 533
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119747931 aacatttgagaaacttgagaagtccacaaagcctattgtggctgccatcaatggaacctg 119747990

                                    
Query: 534       cttaggaggaggacttgag 552
                 |||||||||||||||||||
Sbjct: 119747991 cttaggaggaggacttgag 119748009



 Score =  270 bits (136), Expect = 2e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                             
Query: 278       aggtaaatactctgggtcaggaactgcattcagagttcatagaagtgatgaatgaagtct 337
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119697929 aggtaaatactctgggtcaggaactgcattcagagttcatagaagtgatgaatgaagtct 119697988

                                                                             
Query: 338       ggtctagcagtcagatcagaagcgctgtccttatctcatcaaagccaggctgcttcattg 397
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119697989 ggtctagcagtcagatcagaagcgctgtccttatctcatcaaagccaggctgcttcattg 119698048

                                 
Query: 398       caggtgctgatatcaa 413
                 ||||||||||||||||
Sbjct: 119698049 caggtgctgatatcaa 119698064



 Score =  260 bits (131), Expect = 2e-66
 Identities = 134/135 (99%)
 Strand = Plus / Plus

                                                                             
Query: 1185      gcaccttgccattcttggcgcagggctgatgggagccggcattgcccaggtctccgtgga 1244
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119771200 gcaccttgccattcttggcgcagggctgatgggagccggcattgcccaggtctccgtgga 119771259

                                                                             
Query: 1245      taagcacctaaagactatacttaaggatgcttcactgccggcgctgggccgaggacagga 1304
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 119771260 taagcacctaaagactatacttaaggatgcttcactgccggcgctgggccgaggacagca 119771319

                                
Query: 1305      acaagtgttcaaagg 1319
                 |||||||||||||||
Sbjct: 119771320 acaagtgttcaaagg 119771334



 Score =  246 bits (124), Expect = 3e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                             
Query: 775       ggaccaggattaaaacctccagaggaacggacaattgaatacctagaagaagttgcagtt 834
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119763015 ggaccaggattaaaacctccagaggaacggacaattgaatacctagaagaagttgcagtt 119763074

                                                                             
Query: 835       acttttgccaaaggactagctgataaaaagatctctccaaagagagacaagggactggtg 894
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119763075 acttttgccaaaggactagctgataaaaagatctctccaaagagagacaagggactggtg 119763134

                     
Query: 895       gaaa 898
                 ||||
Sbjct: 119763135 gaaa 119763138



 Score =  240 bits (121), Expect = 2e-60
 Identities = 124/125 (99%)
 Strand = Plus / Plus

                                                                             
Query: 551       agcttgccatttcgtgccagtacagaatagcaacaaaagataagaaaacagtattagggg 610
                 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 119749254 agcttgccatttcgtgccagtacagaatagcaacaaaagataagaaaacagtgttagggg 119749313

                                                                             
Query: 611       cccctgaagtcttgctgggaatcttaccaggagcaggaggcacacaaaggctacccaaaa 670
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119749314 cccctgaagtcttgctgggaatcttaccaggagcaggaggcacacaaaggctacccaaaa 119749373

                      
Query: 671       tggtg 675
                 |||||
Sbjct: 119749374 tggtg 119749378



 Score =  240 bits (121), Expect = 2e-60
 Identities = 121/121 (100%)
 Strand = Plus / Plus

                                                                             
Query: 899       aactgacatcgtacgccatgagtattccatttgtcagacaacagatttacaaaaaggtgg 958
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119764039 aactgacatcgtacgccatgagtattccatttgtcagacaacagatttacaaaaaggtgg 119764098

                                                                             
Query: 959       aagaaaaagtacgaaagcagaccaaaggcctttatcctgcgcctctgaaaattatcgatg 1018
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119764099 aagaaaaagtacgaaagcagaccaaaggcctttatcctgcgcctctgaaaattatcgatg 119764158

                  
Query: 1019      t 1019
                 |
Sbjct: 119764159 t 119764159



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1073      agaaatttggagagcttgcaatgaccaaagaatcaaaagccttgatgggactttaccgtg 1132
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119767620 agaaatttggagagcttgcaatgaccaaagaatcaaaagccttgatgggactttaccgtg 119767679

                                                                      
Query: 1133      gtcagaccctatgcaagaagaataaatttggagctccgcagaaggaggttaag 1185
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119767680 gtcagaccctatgcaagaagaataaatttggagctccgcagaaggaggttaag 119767732



 Score =  216 bits (109), Expect = 3e-53
 Identities = 144/152 (94%), Gaps = 4/152 (2%)
 Strand = Plus / Plus

                                                                             
Query: 1319      gactgaatgattaagtgagaaagaaagcactaacatcatttgaaagggactccctttttc 1378
                 ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 119773328 gactgaatgataaagtgaggaagaaagcactaacatcatttgaaagggactccc-ttttc 119773386

                                                                             
Query: 1379      agc-acttgaccgggcagctcgattaccagggtttgaaaaaggc--acatggtgattgaa 1435
                 ||| |||||||||||||||||||||||||||||||  |||||||  ||||||||||||||
Sbjct: 119773387 agcaacttgaccgggcagctcgattaccagggttttgaaaaggccgacatggtgattgaa 119773446

                                                 
Query: 1436      gctgttttcgaagagctgagtcttaagcacaa 1467
                 ||||||||||||||||||||||||||||||||
Sbjct: 119773447 gctgttttcgaagagctgagtcttaagcacaa 119773478



 Score =  208 bits (105), Expect = 6e-51
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                             
Query: 672       ggtgggtgtgcctgctgcttttgacatgatgctgactggtagaggcattcgggcagacaa 731
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119752463 ggtgggtgtgcctgctgcttttgacatgatgctgactggtagaggcattcgggcagacaa 119752522

                                                              
Query: 732       agcaaagaaaatggggctggttgaccaactggtggaaccgctggg 776
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119752523 agcaaagaaaatggggctggttgaccaactggtggaaccgctggg 119752567



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                             
Query: 209       ccagaacccatattaactatggagtcaaaggggatgtggcagttatccgaattaactcac 268
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119696644 ccagaacccatattaactatggagtcaaaggggatgtggcagttatccgaattaactcac 119696703

                               
Query: 269       ccaattcaaaggta 282
                 ||||||||||||||
Sbjct: 119696704 ccaattcaaaggta 119696717



 Score =  113 bits (57), Expect = 3e-22
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1018      gtagtaaagactgggatcgagcaagggagtgacgccggctatctctctgaatctcag 1074
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119765882 gtagtaaagactgggatcgagcaagggagtgacgccggctatctctctgaatctcag 119765938



 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                              
Query: 164       cagggtacatttgccgcaactttacaaggtcttctgctttgctga 208
                 |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119696506 cagggtacatttgccgcaactttacaaggtcttctgctttgctga 119696550


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 44,740,262
Number of extensions: 282
Number of successful extensions: 282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 13
Length of query: 1467
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1446
Effective length of database: 2,808,413,156
Effective search space: 4060965423576
Effective search space used: 4060965423576
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)