Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007380
(1510 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776760.1| trifunctional enzyme subunit alpha, mitochondri... 807 0.0
Alignment gi|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus]. 134 2e-31
Alignment gi|NP_001039799.1| hydroxyacyl-coenzyme A dehydrogenase, mitoch... 130 3e-30
>ref|NP_776760.1| trifunctional enzyme subunit alpha, mitochondrial [Bos taurus].
Length = 773
Score = 807 bits (2085), Expect = 0.0
Identities = 406/487 (83%), Positives = 439/487 (90%)
Frame = +1
Query: 1 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 180
FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGS AGYLSESQ FGELAMTKES
Sbjct: 287 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSTAGYLSESQTFGELAMTKES 346
Query: 181 KALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPA 360
KALMGLYRGQT CKKNKFGAPQKEVK QVSVDK L+TILKD +LPA
Sbjct: 347 KALMGLYRGQTQCKKNKFGAPQKEVKQLAVVGAGLMGAGIAQVSVDKGLQTILKDTTLPA 406
Query: 361 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 540
LGRGQQQVFKGLNDKV+KK LTSFERD++FSNL GQLDY+GFEKADMVIEAVFE+L+LKH
Sbjct: 407 LGRGQQQVFKGLNDKVKKKTLTSFERDAMFSNLIGQLDYRGFEKADMVIEAVFEDLNLKH 466
Query: 541 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 720
+VLKE EAVIPDHCVFASNTSALPI EIA VSKRPEKVIGMHYFSPVDKMQLLEIITTEK
Sbjct: 467 RVLKEAEAVIPDHCVFASNTSALPIGEIATVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 526
Query: 721 TSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 900
TSKD+TASA++VGL+QGKVIIVVKDGPGFYTTRCL PMMSEV+RILQEGVGPK LDSLTT
Sbjct: 527 TSKDTTASAVDVGLRQGKVIIVVKDGPGFYTTRCLTPMMSEVIRILQEGVGPKNLDSLTT 586
Query: 901 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 1080
SFGFPVGAATL+DE G+DVAKHVAENLGK+FGERFAGG+L+VL QMISKGFLGRKSGKGF
Sbjct: 587 SFGFPVGAATLVDEGGVDVAKHVAENLGKMFGERFAGGSLEVLMQMISKGFLGRKSGKGF 646
Query: 1081 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 1260
Y+YQEGVKN+N+NSD +SILASLK+PS+PD+SSDEDIQYRLVTRFVNEA+LCLQEG+LAT
Sbjct: 647 YIYQEGVKNKNLNSDMDSILASLKMPSQPDVSSDEDIQYRLVTRFVNEAILCLQEGVLAT 706
Query: 1261 PAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 1440
PAEGDIGAV VDLYGAQK+VDRLRKYE Y KQFTPCQLL+DHA++
Sbjct: 707 PAEGDIGAVFGLGFPPCLGGPFHFVDLYGAQKIVDRLRKYETAYEKQFTPCQLLVDHANN 766
Query: 1441 PNKKFFQ 1461
PNKKF+Q
Sbjct: 767 PNKKFYQ 773
>ref|NP_001069248.2| peroxisomal bifunctional enzyme [Bos taurus].
Length = 723
Score = 134 bits (337), Expect = 2e-31
Identities = 99/331 (29%), Positives = 155/331 (46%), Gaps = 14/331 (4%)
Frame = +1
Query: 496 DMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFS 675
D+VIEAV+E+++LK V E+ AV + +NTSAL I EIA+ S RP VIG H+FS
Sbjct: 376 DLVIEAVYEDMNLKKHVFAELSAVCKPEALLCTNTSALDIDEIASSSDRPHLVIGTHFFS 435
Query: 676 PVDKMQLLEIITTEKTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRI 855
P M+LLE+I + +S + A+ + + K K+ +VV + GF R L + +
Sbjct: 436 PAHVMKLLEVIPSRFSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLRSYYDQTYFL 495
Query: 856 LQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDVAKHVAENLGKI-------FGERFAGG 1014
L+EG P+++D + FGF +G + D G+D+ + G R GG
Sbjct: 496 LEEGSKPEEIDEVLEEFGFKMGPFRVSDLAGLDIGWKSRKGQGLTGPTLPPGSSARKRGG 555
Query: 1015 N--LDVLKQMISKGFLGRKSGKGFYVYQEGV-KNRNVNSDTESILASLK--IPSRPDISS 1179
+ + G G+K+GKG+Y+Y + + + + LA + +P I S
Sbjct: 556 RRYCPIPDMLCESGRFGQKTGKGWYLYDKPLGRIHKPDPWLSQFLAQYRETYHIKPRIIS 615
Query: 1180 DEDIQYRLVTRFVNEAVLCLQEGILATPAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKV 1359
++I R + +NEA L EG+ A P D+ + G V
Sbjct: 616 RDEILERCLYSLINEAFRILGEGMAAIPEHIDVIYLHGFGWPRHRGGPMFYASTVGLPTV 675
Query: 1360 VDRLRKYEAIYG--KQFTPCQLLIDHASSPN 1446
+++L+KY Q PC L AS N
Sbjct: 676 LEKLQKYHRQNPDIPQLEPCDYLKKLASQGN 706
>ref|NP_001039799.1| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial [Bos taurus].
Length = 314
Score = 130 bits (327), Expect = 3e-30
Identities = 73/247 (29%), Positives = 134/247 (54%), Gaps = 12/247 (4%)
Frame = +1
Query: 388 KGLNDKVRKKALTSFERD---------SLFSNLTGQLDYQGF-EKADMVIEAVFEELSLK 537
KG+ + +RK A F ++ S+++ D D+V+EA+ E L +K
Sbjct: 68 KGIEESLRKVAKKKFAKNPKGADEFVAKTLSSISTSTDAASVVHSTDLVVEAIVENLQMK 127
Query: 538 HKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTE 717
+++ K ++ +H +FASNTS+L I+ +A + R ++ G+H+F+PV M+L+E+I T
Sbjct: 128 NELFKRLDKFAAEHTIFASNTSSLQITSLANSTTRQDRFAGLHFFNPVPLMKLVEVIKTP 187
Query: 718 KTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKK-LD-S 891
TS+ + S ++ GK + KD PGF R L P + E +R+ + G K+ +D +
Sbjct: 188 MTSQKTFESLLDFSRALGKHPVACKDTPGFIVNRLLVPYLMEAVRLCERGEASKEDIDMA 247
Query: 892 LTTSFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSG 1071
+ G+P+G L+D VG+D K + + ++ + L +++++ G+KSG
Sbjct: 248 MKLGAGYPMGPFELLDYVGLDTTKFILDGWHEMDSKNPLFQPCPSLNKLVAEKKFGKKSG 307
Query: 1072 KGFYVYQ 1092
+GFY Y+
Sbjct: 308 EGFYKYK 314
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,713,145
Number of extensions: 1712246
Number of successful extensions: 7550
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7508
Number of HSP's successfully gapped: 3
Length of query: 503
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 397
Effective length of database: 14,174,046
Effective search space: 5627096262
Effective search space used: 5627096262
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007380
(1510 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 795 0.0
Alignment gi|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase... 778 0.0
Alignment gi|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydrata... 135 1e-31
Alignment gi|XP_535685.2| PREDICTED: similar to Short chain 3-hydroxyacyl... 129 7e-30
>ref|XP_532894.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 2
[Canis familiaris].
Length = 762
Score = 795 bits (2053), Expect = 0.0
Identities = 405/487 (83%), Positives = 436/487 (89%)
Frame = +1
Query: 1 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 180
FVRQQ+YKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQG+DAGYLSESQKFGELAMTKES
Sbjct: 277 FVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKES 336
Query: 181 KALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPA 360
KALMGLY GQ LCKKNKFGAPQKEVK QVSVDK LKTILKDA+L
Sbjct: 337 KALMGLYHGQVLCKKNKFGAPQKEVKDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTG 396
Query: 361 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 540
LGRGQQQVFKGLNDKV+KKALTSFERDS+FSNLTGQLDYQGFEKADMVIEAVFE+LSLKH
Sbjct: 397 LGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKH 456
Query: 541 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 720
+VLKEVEAVIP HCVFASNTSALPI+EIAA SKRPEKVIGMHYFSPVDKMQLLEIITT+K
Sbjct: 457 RVLKEVEAVIPGHCVFASNTSALPINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDK 516
Query: 721 TSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 900
TSKD+TASA+ VGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGV PKKLDSLTT
Sbjct: 517 TSKDTTASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKKLDSLTT 576
Query: 901 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 1080
SFGFPVGAATL+DEVG+DVAKHV+E+LGK FGERF GGN+++LK+M+S+GFLGRKSGKGF
Sbjct: 577 SFGFPVGAATLVDEVGVDVAKHVSEDLGKAFGERFEGGNIELLKEMVSRGFLGRKSGKGF 636
Query: 1081 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 1260
Y+YQEGVK +NVNSD + ILASLK+P + +SSDEDIQYRLVTRFVNEAVLCLQEGILAT
Sbjct: 637 YIYQEGVKTKNVNSDMDGILASLKVPPKYGVSSDEDIQYRLVTRFVNEAVLCLQEGILAT 696
Query: 1261 PAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 1440
P EGDIGAV VDLYGAQK+VDRLRK+EA YGKQFTPCQLLIDHA+S
Sbjct: 697 PTEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKIVDRLRKFEAAYGKQFTPCQLLIDHANS 756
Query: 1441 PNKKFFQ 1461
N KF+Q
Sbjct: 757 AN-KFYQ 762
>ref|XP_859489.1| PREDICTED: similar to hydroxyacyl dehydrogenase, subunit A isoform 3
[Canis familiaris].
Length = 761
Score = 778 bits (2009), Expect = 0.0
Identities = 399/487 (81%), Positives = 431/487 (88%)
Frame = +1
Query: 1 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 180
FVRQQ+YKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQG+DAGYLSESQKFGELAMTKES
Sbjct: 277 FVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGNDAGYLSESQKFGELAMTKES 336
Query: 181 KALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPA 360
KALMGLY GQ LCKKNKFG V+ QVSVDK LKTILKDA+L
Sbjct: 337 KALMGLYHGQVLCKKNKFGG-SLPVRDLAILGAGLMGAGIAQVSVDKGLKTILKDATLTG 395
Query: 361 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 540
LGRGQQQVFKGLNDKV+KKALTSFERDS+FSNLTGQLDYQGFEKADMVIEAVFE+LSLKH
Sbjct: 396 LGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKH 455
Query: 541 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 720
+VLKEVEAVIP HCVFASNTSALPI+EIAA SKRPEKVIGMHYFSPVDKMQLLEIITT+K
Sbjct: 456 RVLKEVEAVIPGHCVFASNTSALPINEIAAASKRPEKVIGMHYFSPVDKMQLLEIITTDK 515
Query: 721 TSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 900
TSKD+TASA+ VGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGV PKKLDSLTT
Sbjct: 516 TSKDTTASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVEPKKLDSLTT 575
Query: 901 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 1080
SFGFPVGAATL+DEVG+DVAKHV+E+LGK FGERF GGN+++LK+M+S+GFLGRKSGKGF
Sbjct: 576 SFGFPVGAATLVDEVGVDVAKHVSEDLGKAFGERFEGGNIELLKEMVSRGFLGRKSGKGF 635
Query: 1081 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 1260
Y+YQEGVK +NVNSD + ILASLK+P + +SSDEDIQYRLVTRFVNEAVLCLQEGILAT
Sbjct: 636 YIYQEGVKTKNVNSDMDGILASLKVPPKYGVSSDEDIQYRLVTRFVNEAVLCLQEGILAT 695
Query: 1261 PAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 1440
P EGDIGAV VDLYGAQK+VDRLRK+EA YGKQFTPCQLLIDHA+S
Sbjct: 696 PTEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKIVDRLRKFEAAYGKQFTPCQLLIDHANS 755
Query: 1441 PNKKFFQ 1461
N KF+Q
Sbjct: 756 AN-KFYQ 761
>ref|XP_545234.1| PREDICTED: similar to enoyl-Coenzyme A, hydratase/3-hydroxyacyl
Coenzyme A dehydrogenase [Canis familiaris].
Length = 723
Score = 135 bits (340), Expect = 1e-31
Identities = 100/332 (30%), Positives = 155/332 (46%), Gaps = 15/332 (4%)
Frame = +1
Query: 496 DMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFS 675
D+VIEAVFEE++LK +V E+ A+ +NTSAL I EIA+ + RP VIG H+FS
Sbjct: 376 DLVIEAVFEEINLKKRVFAELSAICKPEAFLCTNTSALDIDEIASSTDRPHLVIGTHFFS 435
Query: 676 PVDKMQLLEIITTEKTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRI 855
P M+LLEII ++ +S + A+ + + K K+ +VV + GF R L P ++ +
Sbjct: 436 PAHVMKLLEIIPSQYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLKPYYNQTYFL 495
Query: 856 LQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGN------ 1017
L+EG P+++D + FGF +G + D G+DV + G + G G
Sbjct: 496 LEEGSRPEEIDQVLEEFGFKMGPFRVSDLAGLDVGWKSRQGQG-LTGPMVPSGTPARKRG 554
Query: 1018 ----LDVLKQMISKGFLGRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPS---RPDIS 1176
+ + G G+K+GKG+Y Y + + + S S + P I
Sbjct: 555 NRRYCPIPDLLCESGRFGQKTGKGWYQYDKPLGRIHKPDPWLSEFLSQYRKTYHIEPRII 614
Query: 1177 SDEDIQYRLVTRFVNEAVLCLQEGILATPAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQK 1356
S ++I R + +NEA L EG+ P D+ + G
Sbjct: 615 SQDEILERCLYSLINEAFRILGEGMATDPEHIDVVYLHGYGWPRHRGGPMFYASTVGLPT 674
Query: 1357 VVDRLRKY--EAIYGKQFTPCQLLIDHASSPN 1446
V+++L+KY + Q PC L AS N
Sbjct: 675 VLEKLQKYYRQNPDIPQLEPCDYLKKLASLGN 706
>ref|XP_535685.2| PREDICTED: similar to Short chain 3-hydroxyacyl-CoA dehydrogenase,
mitochondrial precursor (HCDH) (Medium and short chain
L-3-hydroxyacyl-coenzyme A dehydrogenase) isoform 1
[Canis familiaris].
Length = 312
Score = 129 bits (324), Expect = 7e-30
Identities = 82/288 (28%), Positives = 144/288 (50%), Gaps = 8/288 (2%)
Frame = +1
Query: 253 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKK----- 417
VKH QV+ +L D + L + ++ + + L +KK
Sbjct: 25 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRRVAKKKFAENP 84
Query: 418 -ALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFAS 594
A F +L S T D+V+EA+ E L K+++ K ++ +H +FAS
Sbjct: 85 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKAKNELFKRLDKFASEHTIFAS 144
Query: 595 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAIEVGLKQGK 774
NTS+L I+ IA + R ++ G+H+F+PV M+L+E+I T TS+ + S I+ GK
Sbjct: 145 NTSSLQITNIANATTRQDRFAGLHFFNPVPLMKLVEVIKTPMTSQKTYESLIDFTKVLGK 204
Query: 775 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKK-LD-SLTTSFGFPVGAATLMDEVG 948
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 205 HPVSCKDTPGFIVNRLLIPYLMEAIRLYERGDASKEDIDTAMKLGAGYPLGPFELLDYVG 264
Query: 949 MDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFYVYQ 1092
+D K + + ++ + + L +++++ G+KSG+G+Y Y+
Sbjct: 265 LDTTKFIMDGWYEMDPKNPLFQPIPSLNKLVAENKFGKKSGEGYYKYK 312
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,309,353
Number of extensions: 1760360
Number of successful extensions: 7274
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7235
Number of HSP's successfully gapped: 4
Length of query: 503
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 396
Effective length of database: 15,307,552
Effective search space: 6061790592
Effective search space used: 6061790592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007380
(1510 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000173.2| trifunctional enzyme subunit alpha, mitochondri... 806 0.0
Alignment gi|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [H... 135 1e-31
Alignment gi|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo... 135 1e-31
Alignment gi|NP_005318.3| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 132 6e-31
Alignment gi|NP_001171634.2| hydroxyacyl-coenzyme A dehydrogenase, mitoch... 124 3e-28
>ref|NP_000173.2| trifunctional enzyme subunit alpha, mitochondrial precursor [Homo
sapiens].
Length = 763
Score = 806 bits (2083), Expect = 0.0
Identities = 406/487 (83%), Positives = 440/487 (90%)
Frame = +1
Query: 1 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 180
FVRQQ+YKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYL ESQKFGEL MTKES
Sbjct: 277 FVRQQVYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLCESQKFGELVMTKES 336
Query: 181 KALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPA 360
KALMGLY GQ LCKKNKFGAPQK+VKH QVSVDK LKTILKDA+L A
Sbjct: 337 KALMGLYHGQVLCKKNKFGAPQKDVKHLAILGAGLMGAGIAQVSVDKGLKTILKDATLTA 396
Query: 361 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 540
L RGQQQVFKGLNDKV+KKALTSFERDS+FSNLTGQLDYQGFEKADMVIEAVFE+LSLKH
Sbjct: 397 LDRGQQQVFKGLNDKVKKKALTSFERDSIFSNLTGQLDYQGFEKADMVIEAVFEDLSLKH 456
Query: 541 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 720
+VLKEVEAVIPDHC+FASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK
Sbjct: 457 RVLKEVEAVIPDHCIFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 516
Query: 721 TSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 900
TSKD++ASA+ VGLKQGKVIIVVKDGPGFYTTRCLAPMMSEV+RILQEGV PKKLDSLTT
Sbjct: 517 TSKDTSASAVAVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVIRILQEGVDPKKLDSLTT 576
Query: 901 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 1080
SFGFPVGAATL+DEVG+DVAKHVAE+LGK+FGERF GGN ++L QM+SKGFLGRKSGKGF
Sbjct: 577 SFGFPVGAATLVDEVGVDVAKHVAEDLGKVFGERFGGGNPELLTQMVSKGFLGRKSGKGF 636
Query: 1081 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 1260
Y+YQEGVK +++NSD +SILASLK+P + ++SSDEDIQ+RLVTRFVNEAV+CLQEGILAT
Sbjct: 637 YIYQEGVKRKDLNSDMDSILASLKLPPKSEVSSDEDIQFRLVTRFVNEAVMCLQEGILAT 696
Query: 1261 PAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 1440
PAEGDIGAV VDLYGAQK+VDRL+KYEA YGKQFTPCQLL DHA+S
Sbjct: 697 PAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKIVDRLKKYEAAYGKQFTPCQLLADHANS 756
Query: 1441 PNKKFFQ 1461
PNKKF+Q
Sbjct: 757 PNKKFYQ 763
>ref|NP_001159887.1| peroxisomal bifunctional enzyme isoform 2 [Homo sapiens].
Length = 627
Score = 135 bits (340), Expect = 1e-31
Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 15/310 (4%)
Frame = +1
Query: 496 DMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFS 675
D+VIEAVFEE+SLK +V E+ AV +NTSAL + EIA+ + RP VIG H+FS
Sbjct: 280 DLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCTNTSALDVDEIASSTDRPHLVIGTHFFS 339
Query: 676 PVDKMQLLEIITTEKTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRI 855
P M+LLE+I ++ +S + A+ + + K K+ +VV + GF R L P ++ +
Sbjct: 340 PAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLNPYYNQAYFL 399
Query: 856 LQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAG------GN 1017
L+EG P+++D + FGF +G + D G+DV + G G GN
Sbjct: 400 LEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLDVGWKSRKGQGLTGPTLLPGTPARKRGN 459
Query: 1018 L------DVLKQMISKGFLGRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPS---RPD 1170
DVL ++ G G+K+GKG+Y Y + + + S S + P
Sbjct: 460 RRYCPIPDVLCEL---GRFGQKTGKGWYQYDKPLGRIHKPDPWLSKFLSRYRKTHHIEPR 516
Query: 1171 ISSDEDIQYRLVTRFVNEAVLCLQEGILATPAEGDIGAVXXXXXXXXXXXXXXXVDLYGA 1350
S ++I R + +NEA L EGI A+P D+ + G
Sbjct: 517 TISQDEILERCLYSLINEAFRILGEGIAASPEHIDVVYLHGYGWPRHKGGPMFYASTVGL 576
Query: 1351 QKVVDRLRKY 1380
V+++L+KY
Sbjct: 577 PTVLEKLQKY 586
>ref|NP_001957.2| peroxisomal bifunctional enzyme isoform 1 [Homo sapiens].
Length = 723
Score = 135 bits (340), Expect = 1e-31
Identities = 98/310 (31%), Positives = 151/310 (48%), Gaps = 15/310 (4%)
Frame = +1
Query: 496 DMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFS 675
D+VIEAVFEE+SLK +V E+ AV +NTSAL + EIA+ + RP VIG H+FS
Sbjct: 376 DLVIEAVFEEMSLKKQVFAELSAVCKPEAFLCTNTSALDVDEIASSTDRPHLVIGTHFFS 435
Query: 676 PVDKMQLLEIITTEKTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRI 855
P M+LLE+I ++ +S + A+ + + K K+ +VV + GF R L P ++ +
Sbjct: 436 PAHVMKLLEVIPSQYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLNPYYNQAYFL 495
Query: 856 LQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAG------GN 1017
L+EG P+++D + FGF +G + D G+DV + G G GN
Sbjct: 496 LEEGSKPEEVDQVLEEFGFKMGPFRVSDLAGLDVGWKSRKGQGLTGPTLLPGTPARKRGN 555
Query: 1018 L------DVLKQMISKGFLGRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPS---RPD 1170
DVL ++ G G+K+GKG+Y Y + + + S S + P
Sbjct: 556 RRYCPIPDVLCEL---GRFGQKTGKGWYQYDKPLGRIHKPDPWLSKFLSRYRKTHHIEPR 612
Query: 1171 ISSDEDIQYRLVTRFVNEAVLCLQEGILATPAEGDIGAVXXXXXXXXXXXXXXXVDLYGA 1350
S ++I R + +NEA L EGI A+P D+ + G
Sbjct: 613 TISQDEILERCLYSLINEAFRILGEGIAASPEHIDVVYLHGYGWPRHKGGPMFYASTVGL 672
Query: 1351 QKVVDRLRKY 1380
V+++L+KY
Sbjct: 673 PTVLEKLQKY 682
>ref|NP_005318.3| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 2
precursor [Homo sapiens].
Length = 314
Score = 132 bits (333), Expect = 6e-31
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 8/288 (2%)
Frame = +1
Query: 253 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKK----- 417
VKH QV+ +L D + L + ++ + + L +KK
Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 86
Query: 418 -ALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFAS 594
A F +L + T D+V+EA+ E L +K+++ K ++ +H +FAS
Sbjct: 87 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 146
Query: 595 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAIEVGLKQGK 774
NTS+L I+ IA + R ++ G+H+F+PV M+L+E+I T TS+ + S ++ GK
Sbjct: 147 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 206
Query: 775 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKK-LD-SLTTSFGFPVGAATLMDEVG 948
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 207 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 266
Query: 949 MDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFYVYQ 1092
+D K + + ++ E L +++++ G+K+G+GFY Y+
Sbjct: 267 LDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEGFYKYK 314
>ref|NP_001171634.2| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial isoform 1
precursor [Homo sapiens].
Length = 331
Score = 124 bits (310), Expect = 3e-28
Identities = 80/305 (26%), Positives = 142/305 (46%), Gaps = 25/305 (8%)
Frame = +1
Query: 253 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKK----- 417
VKH QV+ +L D + L + ++ + + L +KK
Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 86
Query: 418 -ALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFAS 594
A F +L + T D+V+EA+ E L +K+++ K ++ +H +FAS
Sbjct: 87 KAGDEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFAS 146
Query: 595 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAIEVGLKQGK 774
NTS+L I+ IA + R ++ G+H+F+PV M+L+E+I T TS+ + S ++ GK
Sbjct: 147 NTSSLQITSIANATTRQDRFAGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGK 206
Query: 775 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGV---------------GPKKLDSLTTSF- 906
+ KD PGF R L P + E +R+ + G + + T+
Sbjct: 207 HPVSCKDTPGFIVNRLLVPYLMEAIRLYERDFQTCGDSNSGLGFSLKGDASKEDIDTAMK 266
Query: 907 ---GFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKG 1077
G+P+G L+D VG+D K + + ++ E L +++++ G+K+G+G
Sbjct: 267 LGAGYPMGPFELLDYVGLDTTKFIVDGWHEMDAENPLHQPSPSLNKLVAENKFGKKTGEG 326
Query: 1078 FYVYQ 1092
FY Y+
Sbjct: 327 FYKYK 331
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 60,134,543
Number of extensions: 1723999
Number of successful extensions: 7000
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6975
Number of HSP's successfully gapped: 5
Length of query: 503
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 396
Effective length of database: 14,770,016
Effective search space: 5848926336
Effective search space used: 5848926336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007380
(1510 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_849209.1| trifunctional enzyme subunit alpha, mitochondri... 767 0.0
Alignment gi|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus]. 134 1e-31
Alignment gi|NP_032238.2| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 126 4e-29
>ref|NP_849209.1| trifunctional enzyme subunit alpha, mitochondrial precursor [Mus
musculus].
Length = 763
Score = 767 bits (1980), Expect = 0.0
Identities = 377/487 (77%), Positives = 433/487 (88%)
Frame = +1
Query: 1 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 180
FVRQQ+YK VEEKV+KQTKGLYPAPLKIID VK G+EQGSDAGYL+ESQKFGELA+TKES
Sbjct: 277 FVRQQVYKTVEEKVKKQTKGLYPAPLKIIDAVKAGLEQGSDAGYLAESQKFGELALTKES 336
Query: 181 KALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPA 360
KALMGLY GQ LCKKNKFGAPQK V+ QVSVDK LKT+LKD ++
Sbjct: 337 KALMGLYNGQVLCKKNKFGAPQKNVQQLAILGAGLMGAGIAQVSVDKGLKTLLKDTTVTG 396
Query: 361 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 540
LGRGQQQVFKGLNDKV+KKALTSFERDS+FSNL GQLDY+GFEKADMVIEAVFE+L +KH
Sbjct: 397 LGRGQQQVFKGLNDKVKKKALTSFERDSIFSNLIGQLDYKGFEKADMVIEAVFEDLGVKH 456
Query: 541 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 720
KVLKEVE+V P+HC+FASNTSALPI++IAAVSKRPEKVIGMHYFSPVDKMQLLEIITT+K
Sbjct: 457 KVLKEVESVTPEHCIFASNTSALPINQIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTDK 516
Query: 721 TSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 900
TSKD+TASA+ VGL+QGKVIIVVKDGPGFYTTRCLAPMMSEV+RILQEGV PKKLD+LTT
Sbjct: 517 TSKDTTASAVAVGLRQGKVIIVVKDGPGFYTTRCLAPMMSEVMRILQEGVDPKKLDALTT 576
Query: 901 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 1080
FGFPVGAATL DEVG+DVA+HVAE+LGK FGERF GG++++LKQM+SKGFLGRKSGKGF
Sbjct: 577 GFGFPVGAATLADEVGVDVAQHVAEDLGKAFGERFGGGSVELLKQMVSKGFLGRKSGKGF 636
Query: 1081 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 1260
Y+YQEG KN+++NS+ ++ILA+L++P++P++SSDED+QYR++TRFVNEAVLCLQEGILAT
Sbjct: 637 YIYQEGSKNKSLNSEMDNILANLRLPAKPEVSSDEDVQYRVITRFVNEAVLCLQEGILAT 696
Query: 1261 PAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 1440
PAEGDIGAV VDLYGAQKVVDRLRKYE+ YG QFTPCQLL+DHA++
Sbjct: 697 PAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYESAYGTQFTPCQLLLDHANN 756
Query: 1441 PNKKFFQ 1461
+KKF+Q
Sbjct: 757 SSKKFYQ 763
>ref|NP_076226.2| peroxisomal bifunctional enzyme [Mus musculus].
Length = 718
Score = 134 bits (338), Expect = 1e-31
Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 13/342 (3%)
Frame = +1
Query: 394 LNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIP 573
L + K S + + FS+ T +L D+VIEAVFE+++LK KV E+ A+
Sbjct: 342 LEKEASKSGQASAKPNLRFSSSTKELS-----SVDLVIEAVFEDMNLKKKVFAELSALCK 396
Query: 574 DHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAIE 753
+NTSAL + +IA+ + RP+ VIG H+FSP M+LLE+I + +S + A+ +
Sbjct: 397 PGAFLCTNTSALDVDDIASSTDRPQLVIGTHFFSPAHIMRLLEVIPSRYSSPTTIATVMS 456
Query: 754 VGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTTSFGFPVGAATL 933
+ + GK+ +VV + GF R LAP ++ +++EG P+ +D + FGF +G +
Sbjct: 457 LSKRIGKIGVVVGNCYGFVGNRMLAPYYNQGYFLIEEGSKPEDVDGVLEEFGFRMGPFRV 516
Query: 934 MDEVGMDVAKHVAENLGKIFGERFAGGN----------LDVLKQMISKGFLGRKSGKGFY 1083
D G+DV V + G + G G + + G G+K+GKG+Y
Sbjct: 517 SDLAGLDVGWKVRKGQG-LTGPSLPPGTPTRKRGNTRYSPIADMLCEAGRFGQKTGKGWY 575
Query: 1084 VYQEGVKNRNVNSDTESILASLKIPS---RPDISSDEDIQYRLVTRFVNEAVLCLQEGIL 1254
Y + + + S S + + S E+I R + +NEA L+EG+
Sbjct: 576 QYDKPLGRIHKPDPWLSEFLSQYRETHHIKQRSISKEEILERCLYSLINEAFRILEEGMA 635
Query: 1255 ATPAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKY 1380
A+P D+ + G V+++L+KY
Sbjct: 636 ASPEHIDVIYLHGYGWPRHVGGPMYYAASVGLPTVLEKLQKY 677
>ref|NP_032238.2| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 314
Score = 126 bits (317), Expect = 4e-29
Identities = 80/288 (27%), Positives = 143/288 (49%), Gaps = 8/288 (2%)
Frame = +1
Query: 253 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKK----- 417
+KH QV+ +L D + L + ++ + + L +KK
Sbjct: 27 IKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENP 86
Query: 418 -ALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFAS 594
A F +L T D+V+EA+ E L LK+++ + ++ +H +FAS
Sbjct: 87 KAGDEFVEKTLSCLSTSTDAASVVHSTDLVVEAIVENLKLKNELFQRLDKFAAEHTIFAS 146
Query: 595 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAIEVGLKQGK 774
NTS+L I+ IA + R ++ G+H+F+PV M+L+E+I T TS+ + S ++ GK
Sbjct: 147 NTSSLQITNIANATTRQDRFAGLHFFNPVPMMKLVEVIKTPMTSQKTFESLVDFCKTLGK 206
Query: 775 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKK-LD-SLTTSFGFPVGAATLMDEVG 948
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 207 HPVSCKDTPGFIVNRLLVPYLIEAVRLHERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 266
Query: 949 MDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFYVYQ 1092
+D K + + ++ E + ++++ LG+K+G+GFY Y+
Sbjct: 267 LDTTKFILDGWHEMEPENPLFQPSPSMNNLVAQKKLGKKTGEGFYKYK 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,872,742
Number of extensions: 1442632
Number of successful extensions: 5743
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5723
Number of HSP's successfully gapped: 3
Length of query: 503
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 397
Effective length of database: 12,433,743
Effective search space: 4936195971
Effective search space used: 4936195971
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007380
(1510 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999127.1| trifunctional enzyme subunit alpha, mitochondri... 884 0.0
Alignment gi|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [... 137 2e-32
Alignment gi|NP_999496.1| hydroxyacyl-coenzyme A dehydrogenase, mitochond... 129 4e-30
Alignment gi|XP_003132612.2| PREDICTED: peroxisomal bifunctional enzyme-l... 113 3e-25
>ref|NP_999127.1| trifunctional enzyme subunit alpha, mitochondrial [Sus scrofa].
Length = 763
Score = 884 bits (2283), Expect = 0.0
Identities = 457/487 (93%), Positives = 458/487 (94%)
Frame = +1
Query: 1 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 180
FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES
Sbjct: 277 FVRQQIYKKVEEKVRKQTKGLYPAPLKIIDVVKTGIEQGSDAGYLSESQKFGELAMTKES 336
Query: 181 KALMGLYRGQTLCKKNKFGAPQKEVKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPA 360
KALMGLYRGQTLCKKNKFGAPQKEVKH QVSVDKHLKTILKDASLPA
Sbjct: 337 KALMGLYRGQTLCKKNKFGAPQKEVKHLAILGAGLMGAGIAQVSVDKHLKTILKDASLPA 396
Query: 361 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 540
LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH
Sbjct: 397 LGRGQQQVFKGLNDKVRKKALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKH 456
Query: 541 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 720
KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK
Sbjct: 457 KVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEK 516
Query: 721 TSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 900
TSKDSTASA+EVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT
Sbjct: 517 TSKDSTASAVEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKKLDSLTT 576
Query: 901 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 1080
SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF
Sbjct: 577 SFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGF 636
Query: 1081 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 1260
YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT
Sbjct: 637 YVYQEGVKNRNVNSDTESILASLKIPSRPDISSDEDIQYRLVTRFVNEAVLCLQEGILAT 696
Query: 1261 PAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 1440
PAEGDIGAV VDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS
Sbjct: 697 PAEGDIGAVFGLGFPPCLGGPFRFVDLYGAQKVVDRLRKYEAIYGKQFTPCQLLIDHASS 756
Query: 1441 PNKKFFQ 1461
PNKKFFQ
Sbjct: 757 PNKKFFQ 763
>ref|XP_003358782.1| PREDICTED: peroxisomal bifunctional enzyme [Sus scrofa].
Length = 723
Score = 137 bits (344), Expect = 2e-32
Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 15/332 (4%)
Frame = +1
Query: 496 DMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFS 675
D+VIEAVFEE++LK +V E+ AV +NTSAL I EIA+ + RP VIG H+FS
Sbjct: 376 DLVIEAVFEEMNLKKQVFAELSAVCKPQAFLCTNTSALDIDEIASSTNRPHLVIGTHFFS 435
Query: 676 PVDKMQLLEIITTEKTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRI 855
P M+LLE+I + +S + A+ + + K K+ +VV + GF R L P + +
Sbjct: 436 PAHVMKLLEVIPSRYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLKPYYDQTYFL 495
Query: 856 LQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDVAKHVAENLGKIFGERFAGGN------ 1017
L++G P+++D + FGF +G + D G+D+ + G + G G
Sbjct: 496 LEDGSMPEEIDQVLEEFGFRMGPFRVSDLAGLDIGWKSRKGQG-LTGPALPPGTSARKRG 554
Query: 1018 ----LDVLKQMISKGFLGRKSGKGFYVYQEGVKNRNVNSDTESILASLKIPS---RPDIS 1176
V + G G+K+GKG+Y+Y + + + S + + P +
Sbjct: 555 NQRYCPVPDMLCELGRFGQKTGKGWYLYDKPLGRIHKPDPWFSKFLTQYRETHHIEPRVI 614
Query: 1177 SDEDIQYRLVTRFVNEAVLCLQEGILATPAEGDIGAVXXXXXXXXXXXXXXXVDLYGAQK 1356
S ++I R + +NEA L++GI ATP D+ + G
Sbjct: 615 SRDEILDRCLYSLINEAFRILEDGIAATPEHIDVVYLHGYGWPRHRGGPMFYASTVGLPT 674
Query: 1357 VVDRLRKYEAIYG--KQFTPCQLLIDHASSPN 1446
V+++L+KY Q PC L AS N
Sbjct: 675 VLEKLQKYHRQNPDIPQLEPCDYLKKLASQGN 706
>ref|NP_999496.1| hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor [Sus
scrofa].
Length = 314
Score = 129 bits (324), Expect = 4e-30
Identities = 78/288 (27%), Positives = 143/288 (49%), Gaps = 8/288 (2%)
Frame = +1
Query: 253 VKHXXXXXXXXXXXXXXQVSVDKHLKTILKDASLPALGRGQQQVFKGLNDKVRKK----- 417
VKH QV+ +L D + L + ++ + + L +KK
Sbjct: 27 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENP 86
Query: 418 -ALTSFERDSLFSNLTGQLDYQGFEKADMVIEAVFEELSLKHKVLKEVEAVIPDHCVFAS 594
A F +L S T D+V+EA+ E L +K ++ K ++ +H +FAS
Sbjct: 87 KAGDEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFAS 146
Query: 595 NTSALPISEIAAVSKRPEKVIGMHYFSPVDKMQLLEIITTEKTSKDSTASAIEVGLKQGK 774
NTS+L I+ +A + R ++ G+H+F+PV M+L+E++ T TS+ + S ++ GK
Sbjct: 147 NTSSLQITSLANATTRQDRFAGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGK 206
Query: 775 VIIVVKDGPGFYTTRCLAPMMSEVLRILQEGVGPKK-LD-SLTTSFGFPVGAATLMDEVG 948
+ KD PGF R L P + E +R+ + G K+ +D ++ G+P+G L+D VG
Sbjct: 207 HPVSCKDTPGFIVNRLLVPYLIEAVRLYERGDASKEDIDTAMKLGAGYPMGPFELLDYVG 266
Query: 949 MDVAKHVAENLGKIFGERFAGGNLDVLKQMISKGFLGRKSGKGFYVYQ 1092
+D K + + ++ + + +++++ G+K+G+GFY Y+
Sbjct: 267 LDTTKFIIDGWHEMDSQNPLFQPSPAMNKLVAENKFGKKTGEGFYKYK 314
>ref|XP_003132612.2| PREDICTED: peroxisomal bifunctional enzyme-like [Sus scrofa].
Length = 367
Score = 113 bits (282), Expect = 3e-25
Identities = 60/154 (38%), Positives = 92/154 (59%)
Frame = +1
Query: 496 DMVIEAVFEELSLKHKVLKEVEAVIPDHCVFASNTSALPISEIAAVSKRPEKVIGMHYFS 675
D+VIEAVFEE++LK +V E+ AV +NTSAL I EIA+ + RP VIG H+FS
Sbjct: 69 DLVIEAVFEEMNLKKQVFAELSAVCKPQAFLCTNTSALDIDEIASSTNRPHLVIGTHFFS 128
Query: 676 PVDKMQLLEIITTEKTSKDSTASAIEVGLKQGKVIIVVKDGPGFYTTRCLAPMMSEVLRI 855
P M+LLE+I + +S + A+ + + K K+ +VV + GF R L P + +
Sbjct: 129 PAHVMKLLEVIPSRYSSPTTIATVMNLSKKIKKIGVVVGNCFGFVGNRMLKPYYDQTYFL 188
Query: 856 LQEGVGPKKLDSLTTSFGFPVGAATLMDEVGMDV 957
L++G P+++D + FGF +G + D G+D+
Sbjct: 189 LEDGSMPEEIDQVLEEFGFRMGPFRVSDLAGLDI 222
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,838,618
Number of extensions: 1097892
Number of successful extensions: 4693
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4674
Number of HSP's successfully gapped: 4
Length of query: 503
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 400
Effective length of database: 8,779,541
Effective search space: 3511816400
Effective search space used: 3511816400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007380
(1510 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 402 e-109
>Sscrofa_Chr03
|| Length = 144787322
Score = 402 bits (203), Expect = e-109
Identities = 203/203 (100%)
Strand = Plus / Plus
Query: 857 tccaggaaggagttggccctaagaagctggactccctgaccacgagctttggctttcctg 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119780770 tccaggaaggagttggccctaagaagctggactccctgaccacgagctttggctttcctg 119780829
Query: 917 tgggcgctgcgacgctgatggatgaagttggcatggatgtagcgaaacacgtagcggaaa 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119780830 tgggcgctgcgacgctgatggatgaagttggcatggatgtagcgaaacacgtagcggaaa 119780889
Query: 977 atctaggcaaaatctttggggagcggtttgcaggtggaaacctggacgtgctgaagcaga 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119780890 atctaggcaaaatctttggggagcggtttgcaggtggaaacctggacgtgctgaagcaga 119780949
Query: 1037 tgatatccaagggcttcctgggt 1059
|||||||||||||||||||||||
Sbjct: 119780950 tgatatccaagggcttcctgggt 119780972
Score = 369 bits (186), Expect = 3e-99
Identities = 192/194 (98%)
Strand = Plus / Plus
Query: 1317 agggcccttccggtttgtggatctgtacggggctcagaaggtcgtggaccggctccggaa 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119782350 agggcccttccggtttgtggatctgtacggggctcagaaggtcgtggaccggctccggaa 119782409
Query: 1377 gtacgaggccatctatgggaaacagttcacgccgtgccagctgctgattgaccatgccag 1436
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 119782410 gtacgaggccatctatgggaaacagttcacgccatgccagctgctgattgaccatgccag 119782469
Query: 1437 cagcccaaataagaagttcttccagtgagcgagcctcctctctgctcactcgccccctga 1496
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 119782470 cagcccaaataagaagttcttccagtgagcgagccttctctctgctcactcgccccctga 119782529
Query: 1497 caccgacagcggca 1510
||||||||||||||
Sbjct: 119782530 caccgacagcggca 119782543
Score = 347 bits (175), Expect = 1e-92
Identities = 175/175 (100%)
Strand = Plus / Plus
Query: 392 gactgaatgataaagtgaggaagaaagcactaacatcatttgaaagggactcccttttca 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119773328 gactgaatgataaagtgaggaagaaagcactaacatcatttgaaagggactcccttttca 119773387
Query: 452 gcaacttgaccgggcagctcgattaccagggttttgaaaaggccgacatggtgattgaag 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119773388 gcaacttgaccgggcagctcgattaccagggttttgaaaaggccgacatggtgattgaag 119773447
Query: 512 ctgttttcgaagagctgagtcttaagcacaaagtgctcaaagaggtagaggcggt 566
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119773448 ctgttttcgaagagctgagtcttaagcacaaagtgctcaaagaggtagaggcggt 119773502
Score = 278 bits (140), Expect = 8e-72
Identities = 143/144 (99%)
Strand = Plus / Plus
Query: 650 aggtgattggcatgcactacttctctcctgtggacaagatgcagctgctggagattatca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119779410 aggtgattggcatgcactacttctctcctgtggacaagatgcagctgctggagattatca 119779469
Query: 710 ccactgaaaaaacctctaaggactcaactgcttcggccatagaagttggtctcaaacagg 769
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 119779470 ccactgaaaaaacctctaaggactcaactgcttcggccgtagaagttggtctcaaacagg 119779529
Query: 770 ggaaggtcatcattgtggttaagg 793
||||||||||||||||||||||||
Sbjct: 119779530 ggaaggtcatcattgtggttaagg 119779553
Score = 268 bits (135), Expect = 8e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 258 gcaccttgccattcttggcgcagggctgatgggagccggcattgcccaggtctccgtgga 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119771200 gcaccttgccattcttggcgcagggctgatgggagccggcattgcccaggtctccgtgga 119771259
Query: 318 taagcacctaaagactatacttaaggatgcttcactgccggcgctgggccgaggacagca 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119771260 taagcacctaaagactatacttaaggatgcttcactgccggcgctgggccgaggacagca 119771319
Query: 378 acaagtgttcaaagg 392
|||||||||||||||
Sbjct: 119771320 acaagtgttcaaagg 119771334
Score = 256 bits (129), Expect = 3e-65
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1173 ctcttcagacgaagacatccagtaccgcctggtgaccagattcgtgaacgaggctgtcct 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119782111 ctcttcagacgaagacatccagtaccgcctggtgaccagattcgtgaacgaggctgtcct 119782170
Query: 1233 gtgcctgcaggaagggatcttggccacgcctgccgagggcgacatcggggccgtctttgg 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119782171 gtgcctgcaggaagggatcttggccacgcctgccgagggcgacatcggggccgtctttgg 119782230
Query: 1293 gctcggctt 1301
|||||||||
Sbjct: 119782231 gctcggctt 119782239
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Plus
Query: 146 agaaatttggagagcttgcaatgaccaaagaatcaaaagccttgatgggactttaccgtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119767620 agaaatttggagagcttgcaatgaccaaagaatcaaaagccttgatgggactttaccgtg 119767679
Query: 206 gtcagaccctatgcaagaagaataaatttggagctccgcagaaggaggttaag 258
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119767680 gtcagaccctatgcaagaagaataaatttggagctccgcagaaggaggttaag 119767732
Score = 222 bits (112), Expect = 4e-55
Identities = 115/116 (99%)
Strand = Plus / Plus
Query: 1057 ggtcgcaaatctgggaagggcttttacgtctaccaggagggagtgaagaatcggaatgtg 1116
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119781550 ggtcgcaagtctgggaagggcttttacgtctaccaggagggagtgaagaatcggaatgtg 119781609
Query: 1117 aattctgacacggagagcattttggcaagtctgaagataccctctcggcctgacat 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119781610 aattctgacacggagagcattttggcaagtctgaagataccctctcggcctgacat 119781665
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tttgtcagacaacagatttacaaaaaggtggaagaaaaagtacgaaagcagaccaaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119764068 tttgtcagacaacagatttacaaaaaggtggaagaaaaagtacgaaagcagaccaaaggc 119764127
Query: 61 ctttatcctgcgcctctgaaaattatcgatgt 92
||||||||||||||||||||||||||||||||
Sbjct: 119764128 ctttatcctgcgcctctgaaaattatcgatgt 119764159
Score = 178 bits (90), Expect = 6e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 564 ggtgattccagatcactgtgtctttgccagcaacacgtctgctctcccgatcagtgaaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119775826 ggtgattccagatcactgtgtctttgccagcaacacgtctgctctcccgatcagtgaaat 119775885
Query: 624 tgctgctgtcagtaaaagacctgagaaggt 653
||||||||||||||||||||||||||||||
Sbjct: 119775886 tgctgctgtcagtaaaagacctgagaaggt 119775915
Score = 135 bits (68), Expect = 8e-29
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 791 aggatggacccggcttctacaccaccaggtgcctcgcacccatgatgtctgaagtcctca 850
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 119779958 aggatggacccggcttctacaccaccaggtgccttgcacccatgatgtctgaagtcctca 119780017
Query: 851 gaattctccagg 862
||||||||||||
Sbjct: 119780018 gaattctccagg 119780029
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 91 gtagtaaagactgggatcgagcaagggagtgacgccggctatctctctgaatctcag 147
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119765882 gtagtaaagactgggatcgagcaagggagtgacgccggctatctctctgaatctcag 119765938
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 41,252,255
Number of extensions: 226
Number of successful extensions: 226
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 12
Length of query: 1510
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1489
Effective length of database: 2,808,413,156
Effective search space: 4181727189284
Effective search space used: 4181727189284
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)