Animal-Genome cDNA 20110601C-007387


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007387
         (1137 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029613.1| 26S proteasome non-ATPase regulatory subunit...   384   e-107

>ref|NP_001029613.1| 26S proteasome non-ATPase regulatory subunit 9 [Bos taurus].
          Length = 221

 Score =  384 bits (986), Expect = e-107
 Identities = 195/223 (87%), Positives = 204/223 (91%)
 Frame = +1

Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
           MSE+   QSGGSPEASGVTVSD+Q LIRRKEEIEAQIKANY+VLESQKG+GMNEPLVDCE
Sbjct: 1   MSEKAGSQSGGSPEASGVTVSDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCE 60

Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
           GYPR+DVDLYQVRTARHNIVCLQNDHKAVMKQVE+ALHQLHARDKEKQA+DLAEAHREA 
Sbjct: 61  GYPRADVDLYQVRTARHNIVCLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREA- 119

Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
                         AFAKVNSISPGSPASIAGLQVDDEI+EFGSVNTQNFQSLQNIGSVV
Sbjct: 120 -LSRDQSQGLSPAQAFAKVNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIGSVV 178

Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
           QHSEGKPLNVTV+RRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 179 QHSEGKPLNVTVMRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 221


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,645,034
Number of extensions: 1308356
Number of successful extensions: 5425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5401
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007387
         (1137 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534665.2| PREDICTED: similar to 26S proteasome non-ATPase...   382   e-106
Alignment   gi|XP_860075.1| PREDICTED: similar to 26S proteasome non-ATPase...   222   6e-58

>ref|XP_534665.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
           9 (26S proteasome regulatory subunit p27) isoform 1
           [Canis familiaris].
          Length = 223

 Score =  382 bits (982), Expect = e-106
 Identities = 195/223 (87%), Positives = 199/223 (89%)
 Frame = +1

Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
           MSE EARQ  GSP+A  VTVSDIQ LIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE
Sbjct: 1   MSEGEARQGEGSPQAGAVTVSDIQELIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 60

Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
           GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQA+D+AEAH EA 
Sbjct: 61  GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHEEAM 120

Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
                         AFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSL NI +VV
Sbjct: 121 SRNLGQSEDRRPPQAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNISNVV 180

Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
           QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 181 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 223


>ref|XP_860075.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
           9 (26S proteasome regulatory subunit p27) isoform 3
           [Canis familiaris].
          Length = 134

 Score =  222 bits (565), Expect = 6e-58
 Identities = 113/134 (84%), Positives = 116/134 (86%)
 Frame = +1

Query: 406 MKQVEEALHQLHARDKEKQAQDLAEAHREAXXXXXXXXXXXXXXXAFAKVNSISPGSPAS 585
           MKQVEEALHQLHARDKEKQA+D+AEAH EA               AFAKVNSISPGSPAS
Sbjct: 1   MKQVEEALHQLHARDKEKQARDMAEAHEEAMSRNLGQSEDRRPPQAFAKVNSISPGSPAS 60

Query: 586 IAGLQVDDEIVEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWA 765
           IAGLQVDDEIVEFGSVNTQNFQSL NI +VVQHSEGKPLNVTVIRRGEKHQLRLVPTRWA
Sbjct: 61  IAGLQVDDEIVEFGSVNTQNFQSLHNISNVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWA 120

Query: 766 GKGLLGCNIIPLQR 807
           GKGLLGCNIIPLQR
Sbjct: 121 GKGLLGCNIIPLQR 134


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,592,153
Number of extensions: 1350187
Number of successful extensions: 5466
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5449
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007387
         (1137 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002804.2| 26S proteasome non-ATPase regulatory subunit 9 ...   385   e-107

>ref|NP_002804.2| 26S proteasome non-ATPase regulatory subunit 9 [Homo sapiens].
          Length = 223

 Score =  385 bits (989), Expect = e-107
 Identities = 193/223 (86%), Positives = 203/223 (91%)
 Frame = +1

Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
           MS++EARQSGGS +A  VTVSD+Q L+RRKEEIEAQIKANYDVLESQKG+GMNEPLVDCE
Sbjct: 1   MSDEEARQSGGSSQAGVVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE 60

Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
           GYPRSDVDLYQVRTARHNI+CLQNDHKAVMKQVEEALHQLHARDKEKQA+D+AEAH+EA 
Sbjct: 61  GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM 120

Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
                         AFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSL NIGSVV
Sbjct: 121 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV 180

Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
           QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 181 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 223


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,635,545
Number of extensions: 1315141
Number of successful extensions: 5128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5103
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007387
         (1137 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_080276.2| 26S proteasome non-ATPase regulatory subunit 9 ...   353   1e-97

>ref|NP_080276.2| 26S proteasome non-ATPase regulatory subunit 9 [Mus musculus].
          Length = 222

 Score =  353 bits (907), Expect = 1e-97
 Identities = 178/223 (79%), Positives = 193/223 (86%)
 Frame = +1

Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
           MS ++      S EA    VSDIQ L+RRKEEIEA+IKANYDVLESQKG+GMNEPLVDCE
Sbjct: 1   MSGEDVPHRAESSEARAAAVSDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCE 60

Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
           GYPR+DVDLYQVRTARHNI+CLQNDHKA+MKQVEEALHQLHARDKEKQA+D+AEA  EA 
Sbjct: 61  GYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEA- 119

Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
                         AFA+VNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQS+QN+G+VV
Sbjct: 120 MNRRLASNSPVLPQAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVV 179

Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
           QHSEGKPLNVTVIRRGEKHQLRL+PTRWAGKGLLGCNIIPLQR
Sbjct: 180 QHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNIIPLQR 222


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,574,091
Number of extensions: 1094505
Number of successful extensions: 4105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4093
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007387
         (1137 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003132922.1| PREDICTED: 26S proteasome non-ATPase regulat...   406   e-113

>ref|XP_003132922.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like [Sus
           scrofa].
          Length = 223

 Score =  406 bits (1044), Expect = e-113
 Identities = 208/223 (93%), Positives = 208/223 (93%)
 Frame = +1

Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
           MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE
Sbjct: 1   MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 60

Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
           GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREA 
Sbjct: 61  GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAL 120

Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
                         AFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV
Sbjct: 121 SLGLGQSQGLSLPQAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 180

Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
           QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 181 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 223


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,821,264
Number of extensions: 846247
Number of successful extensions: 3403
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3392
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007387
         (1137 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         670   0.0  

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  670 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Minus

                                                                            
Query: 782      gctgcaacattattcctttgcaaagatgattgtccctggggaacagaaacaggaaagcat 841
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600491 gctgcaacattattcctttgcaaagatgattgtccctggggaacagaaacaggaaagcat 32600432

                                                                            
Query: 842      cttccgttgcccagacttggtctagtgggcatttcctcctcttcttctttccctgaagct 901
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600431 cttccgttgcccagacttggtctagtgggcatttcctcctcttcttctttccctgaagct 32600372

                                                                            
Query: 902      taaggatctggaagagactggaagcctgaactaggtggtggaaatgctgtggcctcccaa 961
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600371 taaggatctggaagagactggaagcctgaactaggtggtggaaatgctgtggcctcccaa 32600312

                                                                            
Query: 962      tgaaacctctcaggattaaggcattgttaaaaacttgatttgtatttagcatcttttgca 1021
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600311 tgaaacctctcaggattaaggcattgttaaaaacttgatttgtatttagcatcttttgca 32600252

                                                                            
Query: 1022     aatcaggccatgcccctaaataaaagtcctctggattgtgagcaagtgggctggagttat 1081
                ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32600251 aatcaggccatgcccctaaataagagtcctctggattgtgagcaagtgggctggagttat 32600192

                                                          
Query: 1082     cctggcaggtgctgatatgattttattcttatagaaattttg 1123
                ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600191 cctggcaggtgctgatatgattttattcttatagaaattttg 32600150



 Score =  513 bits (259), Expect = e-143
 Identities = 259/259 (100%)
 Strand = Plus / Minus

                                                                            
Query: 18       ttttcctggcgcctgcgaatggcggtggtgttttggcccgccggtggagccgtagctaca 77
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627310 ttttcctggcgcctgcgaatggcggtggtgttttggcccgccggtggagccgtagctaca 32627251

                                                                            
Query: 78       gtctcctcgggcgttcgcagccggaaaaccggctgtccaggatcccggaccgaggtccac 137
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627250 gtctcctcgggcgttcgcagccggaaaaccggctgtccaggatcccggaccgaggtccac 32627191

                                                                            
Query: 138      aatgtcggagcaggaggctaggcagagcggaggttccccggaggccagcggggtgactgt 197
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627190 aatgtcggagcaggaggctaggcagagcggaggttccccggaggccagcggggtgactgt 32627131

                                                                            
Query: 198      aagcgacattcaggcgctgatacggcgcaaggaggagatcgaggcgcagatcaaagccaa 257
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627130 aagcgacattcaggcgctgatacggcgcaaggaggagatcgaggcgcagatcaaagccaa 32627071

                                   
Query: 258      ttatgacgtgctggagagc 276
                |||||||||||||||||||
Sbjct: 32627070 ttatgacgtgctggagagc 32627052



 Score =  422 bits (213), Expect = e-115
 Identities = 213/213 (100%)
 Strand = Plus / Minus

                                                                            
Query: 380      gcttgcagaacgatcacaaggcagtgatgaagcaggtggaggaggccctgcaccagctgc 439
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32616877 gcttgcagaacgatcacaaggcagtgatgaagcaggtggaggaggccctgcaccagctgc 32616818

                                                                            
Query: 440      atgcccgagacaaggagaagcaggcccaggacctggctgaggcccacagggaggccctga 499
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32616817 atgcccgagacaaggagaagcaggcccaggacctggctgaggcccacagggaggccctga 32616758

                                                                            
Query: 500      gccttggcctgggccagagccagggcctcagcctccctcaggccttcgccaaagtgaaca 559
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32616757 gccttggcctgggccagagccagggcctcagcctccctcaggccttcgccaaagtgaaca 32616698

                                                 
Query: 560      gcatcagccccggctcccccgccagcatcgcgg 592
                |||||||||||||||||||||||||||||||||
Sbjct: 32616697 gcatcagccccggctcccccgccagcatcgcgg 32616665



 Score =  206 bits (104), Expect = 2e-50
 Identities = 104/104 (100%)
 Strand = Plus / Minus

                                                                            
Query: 277      caaaaaggcgtggggatgaacgagccgctagtggactgcgagggctacccccggtcagat 336
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32622151 caaaaaggcgtggggatgaacgagccgctagtggactgcgagggctacccccggtcagat 32622092

                                                            
Query: 337      gtggacctgtaccaagtccgaacagcaaggcacaacatcgtctg 380
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32622091 gtggacctgtaccaagtccgaacagcaaggcacaacatcgtctg 32622048



 Score =  204 bits (103), Expect = 8e-50
 Identities = 103/103 (100%)
 Strand = Plus / Minus

                                                                            
Query: 591      gggtctgcaagtggatgacgagattgtggagtttggctctgtaaatacccaaaacttcca 650
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32614666 gggtctgcaagtggatgacgagattgtggagtttggctctgtaaatacccaaaacttcca 32614607

                                                           
Query: 651      gtcactgcagaatattggcagcgtggtccagcacagtgagggg 693
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32614606 gtcactgcagaatattggcagcgtggtccagcacagtgagggg 32614564



 Score =  178 bits (90), Expect = 4e-42
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                            
Query: 693      gaagcccctgaatgtgacagtgatccgaagaggggagaaacaccagcttagactcgtccc 752
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600840 gaagcccctgaatgtgacagtgatccgaagaggggagaaacaccagcttagactcgtccc 32600781

                                              
Query: 753      aacacgctgggcaggaaaaggattgctggg 782
                ||||||||||||||||||||||||||||||
Sbjct: 32600780 aacacgctgggcaggaaaaggattgctggg 32600751


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,181,377
Number of extensions: 348
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 6
Length of query: 1137
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1116
Effective length of database: 2,808,413,156
Effective search space: 3134189082096
Effective search space used: 3134189082096
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)