Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007387
(1137 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029613.1| 26S proteasome non-ATPase regulatory subunit... 384 e-107
>ref|NP_001029613.1| 26S proteasome non-ATPase regulatory subunit 9 [Bos taurus].
Length = 221
Score = 384 bits (986), Expect = e-107
Identities = 195/223 (87%), Positives = 204/223 (91%)
Frame = +1
Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
MSE+ QSGGSPEASGVTVSD+Q LIRRKEEIEAQIKANY+VLESQKG+GMNEPLVDCE
Sbjct: 1 MSEKAGSQSGGSPEASGVTVSDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCE 60
Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
GYPR+DVDLYQVRTARHNIVCLQNDHKAVMKQVE+ALHQLHARDKEKQA+DLAEAHREA
Sbjct: 61 GYPRADVDLYQVRTARHNIVCLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREA- 119
Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
AFAKVNSISPGSPASIAGLQVDDEI+EFGSVNTQNFQSLQNIGSVV
Sbjct: 120 -LSRDQSQGLSPAQAFAKVNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIGSVV 178
Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
QHSEGKPLNVTV+RRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 179 QHSEGKPLNVTVMRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 221
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,645,034
Number of extensions: 1308356
Number of successful extensions: 5425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5401
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,240,222
Effective search space: 3916061050
Effective search space used: 3916061050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007387
(1137 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534665.2| PREDICTED: similar to 26S proteasome non-ATPase... 382 e-106
Alignment gi|XP_860075.1| PREDICTED: similar to 26S proteasome non-ATPase... 222 6e-58
>ref|XP_534665.2| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
9 (26S proteasome regulatory subunit p27) isoform 1
[Canis familiaris].
Length = 223
Score = 382 bits (982), Expect = e-106
Identities = 195/223 (87%), Positives = 199/223 (89%)
Frame = +1
Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
MSE EARQ GSP+A VTVSDIQ LIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE
Sbjct: 1 MSEGEARQGEGSPQAGAVTVSDIQELIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 60
Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQA+D+AEAH EA
Sbjct: 61 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHEEAM 120
Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
AFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSL NI +VV
Sbjct: 121 SRNLGQSEDRRPPQAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNISNVV 180
Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 181 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 223
>ref|XP_860075.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit
9 (26S proteasome regulatory subunit p27) isoform 3
[Canis familiaris].
Length = 134
Score = 222 bits (565), Expect = 6e-58
Identities = 113/134 (84%), Positives = 116/134 (86%)
Frame = +1
Query: 406 MKQVEEALHQLHARDKEKQAQDLAEAHREAXXXXXXXXXXXXXXXAFAKVNSISPGSPAS 585
MKQVEEALHQLHARDKEKQA+D+AEAH EA AFAKVNSISPGSPAS
Sbjct: 1 MKQVEEALHQLHARDKEKQARDMAEAHEEAMSRNLGQSEDRRPPQAFAKVNSISPGSPAS 60
Query: 586 IAGLQVDDEIVEFGSVNTQNFQSLQNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWA 765
IAGLQVDDEIVEFGSVNTQNFQSL NI +VVQHSEGKPLNVTVIRRGEKHQLRLVPTRWA
Sbjct: 61 IAGLQVDDEIVEFGSVNTQNFQSLHNISNVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWA 120
Query: 766 GKGLLGCNIIPLQR 807
GKGLLGCNIIPLQR
Sbjct: 121 GKGLLGCNIIPLQR 134
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,592,153
Number of extensions: 1350187
Number of successful extensions: 5466
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5449
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 275
Effective length of database: 15,407,560
Effective search space: 4237079000
Effective search space used: 4237079000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007387
(1137 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002804.2| 26S proteasome non-ATPase regulatory subunit 9 ... 385 e-107
>ref|NP_002804.2| 26S proteasome non-ATPase regulatory subunit 9 [Homo sapiens].
Length = 223
Score = 385 bits (989), Expect = e-107
Identities = 193/223 (86%), Positives = 203/223 (91%)
Frame = +1
Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
MS++EARQSGGS +A VTVSD+Q L+RRKEEIEAQIKANYDVLESQKG+GMNEPLVDCE
Sbjct: 1 MSDEEARQSGGSSQAGVVTVSDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCE 60
Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
GYPRSDVDLYQVRTARHNI+CLQNDHKAVMKQVEEALHQLHARDKEKQA+D+AEAH+EA
Sbjct: 61 GYPRSDVDLYQVRTARHNIICLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAM 120
Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
AFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSL NIGSVV
Sbjct: 121 SRKLGQSESQGPPRAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLHNIGSVV 180
Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 181 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 223
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,635,545
Number of extensions: 1315141
Number of successful extensions: 5128
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5103
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 275
Effective length of database: 14,868,908
Effective search space: 4088949700
Effective search space used: 4088949700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007387
(1137 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080276.2| 26S proteasome non-ATPase regulatory subunit 9 ... 353 1e-97
>ref|NP_080276.2| 26S proteasome non-ATPase regulatory subunit 9 [Mus musculus].
Length = 222
Score = 353 bits (907), Expect = 1e-97
Identities = 178/223 (79%), Positives = 193/223 (86%)
Frame = +1
Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
MS ++ S EA VSDIQ L+RRKEEIEA+IKANYDVLESQKG+GMNEPLVDCE
Sbjct: 1 MSGEDVPHRAESSEARAAAVSDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCE 60
Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
GYPR+DVDLYQVRTARHNI+CLQNDHKA+MKQVEEALHQLHARDKEKQA+D+AEA EA
Sbjct: 61 GYPRADVDLYQVRTARHNIICLQNDHKALMKQVEEALHQLHARDKEKQARDMAEAREEA- 119
Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
AFA+VNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQS+QN+G+VV
Sbjct: 120 MNRRLASNSPVLPQAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVGTVV 179
Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
QHSEGKPLNVTVIRRGEKHQLRL+PTRWAGKGLLGCNIIPLQR
Sbjct: 180 QHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNIIPLQR 222
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,574,091
Number of extensions: 1094505
Number of successful extensions: 4105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4093
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 276
Effective length of database: 12,523,851
Effective search space: 3456582876
Effective search space used: 3456582876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007387
(1137 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132922.1| PREDICTED: 26S proteasome non-ATPase regulat... 406 e-113
>ref|XP_003132922.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like [Sus
scrofa].
Length = 223
Score = 406 bits (1044), Expect = e-113
Identities = 208/223 (93%), Positives = 208/223 (93%)
Frame = +1
Query: 139 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 318
MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE
Sbjct: 1 MSEQEARQSGGSPEASGVTVSDIQALIRRKEEIEAQIKANYDVLESQKGVGMNEPLVDCE 60
Query: 319 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAX 498
GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREA
Sbjct: 61 GYPRSDVDLYQVRTARHNIVCLQNDHKAVMKQVEEALHQLHARDKEKQAQDLAEAHREAL 120
Query: 499 XXXXXXXXXXXXXXAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 678
AFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV
Sbjct: 121 SLGLGQSQGLSLPQAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNIGSVV 180
Query: 679 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 807
QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR
Sbjct: 181 QHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNIIPLQR 223
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,821,264
Number of extensions: 846247
Number of successful extensions: 3403
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3392
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 278
Effective length of database: 8,829,335
Effective search space: 2454555130
Effective search space used: 2454555130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007387
(1137 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 670 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 670 bits (338), Expect = 0.0
Identities = 341/342 (99%)
Strand = Plus / Minus
Query: 782 gctgcaacattattcctttgcaaagatgattgtccctggggaacagaaacaggaaagcat 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600491 gctgcaacattattcctttgcaaagatgattgtccctggggaacagaaacaggaaagcat 32600432
Query: 842 cttccgttgcccagacttggtctagtgggcatttcctcctcttcttctttccctgaagct 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600431 cttccgttgcccagacttggtctagtgggcatttcctcctcttcttctttccctgaagct 32600372
Query: 902 taaggatctggaagagactggaagcctgaactaggtggtggaaatgctgtggcctcccaa 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600371 taaggatctggaagagactggaagcctgaactaggtggtggaaatgctgtggcctcccaa 32600312
Query: 962 tgaaacctctcaggattaaggcattgttaaaaacttgatttgtatttagcatcttttgca 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600311 tgaaacctctcaggattaaggcattgttaaaaacttgatttgtatttagcatcttttgca 32600252
Query: 1022 aatcaggccatgcccctaaataaaagtcctctggattgtgagcaagtgggctggagttat 1081
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32600251 aatcaggccatgcccctaaataagagtcctctggattgtgagcaagtgggctggagttat 32600192
Query: 1082 cctggcaggtgctgatatgattttattcttatagaaattttg 1123
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600191 cctggcaggtgctgatatgattttattcttatagaaattttg 32600150
Score = 513 bits (259), Expect = e-143
Identities = 259/259 (100%)
Strand = Plus / Minus
Query: 18 ttttcctggcgcctgcgaatggcggtggtgttttggcccgccggtggagccgtagctaca 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627310 ttttcctggcgcctgcgaatggcggtggtgttttggcccgccggtggagccgtagctaca 32627251
Query: 78 gtctcctcgggcgttcgcagccggaaaaccggctgtccaggatcccggaccgaggtccac 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627250 gtctcctcgggcgttcgcagccggaaaaccggctgtccaggatcccggaccgaggtccac 32627191
Query: 138 aatgtcggagcaggaggctaggcagagcggaggttccccggaggccagcggggtgactgt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627190 aatgtcggagcaggaggctaggcagagcggaggttccccggaggccagcggggtgactgt 32627131
Query: 198 aagcgacattcaggcgctgatacggcgcaaggaggagatcgaggcgcagatcaaagccaa 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32627130 aagcgacattcaggcgctgatacggcgcaaggaggagatcgaggcgcagatcaaagccaa 32627071
Query: 258 ttatgacgtgctggagagc 276
|||||||||||||||||||
Sbjct: 32627070 ttatgacgtgctggagagc 32627052
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Minus
Query: 380 gcttgcagaacgatcacaaggcagtgatgaagcaggtggaggaggccctgcaccagctgc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32616877 gcttgcagaacgatcacaaggcagtgatgaagcaggtggaggaggccctgcaccagctgc 32616818
Query: 440 atgcccgagacaaggagaagcaggcccaggacctggctgaggcccacagggaggccctga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32616817 atgcccgagacaaggagaagcaggcccaggacctggctgaggcccacagggaggccctga 32616758
Query: 500 gccttggcctgggccagagccagggcctcagcctccctcaggccttcgccaaagtgaaca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32616757 gccttggcctgggccagagccagggcctcagcctccctcaggccttcgccaaagtgaaca 32616698
Query: 560 gcatcagccccggctcccccgccagcatcgcgg 592
|||||||||||||||||||||||||||||||||
Sbjct: 32616697 gcatcagccccggctcccccgccagcatcgcgg 32616665
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Minus
Query: 277 caaaaaggcgtggggatgaacgagccgctagtggactgcgagggctacccccggtcagat 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32622151 caaaaaggcgtggggatgaacgagccgctagtggactgcgagggctacccccggtcagat 32622092
Query: 337 gtggacctgtaccaagtccgaacagcaaggcacaacatcgtctg 380
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32622091 gtggacctgtaccaagtccgaacagcaaggcacaacatcgtctg 32622048
Score = 204 bits (103), Expect = 8e-50
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 591 gggtctgcaagtggatgacgagattgtggagtttggctctgtaaatacccaaaacttcca 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32614666 gggtctgcaagtggatgacgagattgtggagtttggctctgtaaatacccaaaacttcca 32614607
Query: 651 gtcactgcagaatattggcagcgtggtccagcacagtgagggg 693
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32614606 gtcactgcagaatattggcagcgtggtccagcacagtgagggg 32614564
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 693 gaagcccctgaatgtgacagtgatccgaagaggggagaaacaccagcttagactcgtccc 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32600840 gaagcccctgaatgtgacagtgatccgaagaggggagaaacaccagcttagactcgtccc 32600781
Query: 753 aacacgctgggcaggaaaaggattgctggg 782
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Sbjct: 32600780 aacacgctgggcaggaaaaggattgctggg 32600751
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,181,377
Number of extensions: 348
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 6
Length of query: 1137
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1116
Effective length of database: 2,808,413,156
Effective search space: 3134189082096
Effective search space used: 3134189082096
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)