Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007388
(1500 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015553.1| serine hydroxymethyltransferase, cytosolic [... 865 0.0
Alignment gi|NP_001029454.1| serine hydroxymethyltransferase, mitochondri... 590 e-168
>ref|NP_001015553.1| serine hydroxymethyltransferase, cytosolic [Bos taurus].
Length = 484
Score = 865 bits (2234), Expect = 0.0
Identities = 424/455 (93%), Positives = 442/455 (97%)
Frame = +3
Query: 129 MATPDSGAPWDADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRA 308
MA P + AP DA+LWS H+KML QPLKD+D+EVYNIIKKES+RQRVGLELIASENFASRA
Sbjct: 1 MAAPVNKAPRDANLWSLHEKMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRA 60
Query: 309 VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSG 488
VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQVYGLD QCWGVNVQPYSG
Sbjct: 61 VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSG 120
Query: 489 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGY 668
SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+PDTGY
Sbjct: 121 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGY 180
Query: 669 INYDRLEENARLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGV 848
INYD+LEENARLFHP+LIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAH+SGLVAAGV
Sbjct: 181 INYDQLEENARLFHPRLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHVSGLVAAGV 240
Query: 849 VPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGL 1028
VPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGL
Sbjct: 241 VPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGL 300
Query: 1029 QGGPHNHAIAGVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLIL 1208
QGGPHNHAIAGVAVALKQAMTPEFR YQ QVVANCRALA+ LMGLGY+VVTGGSDNHLIL
Sbjct: 301 QGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLIL 360
Query: 1209 VDLRSKGTDGGRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQE 1388
VDLRSKGTDGGRAEKVLEAC+IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQ+
Sbjct: 361 VDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQK 420
Query: 1389 VARFIHRGIELTLQIQDAVGAKATLKEFMETLAGA 1493
VA FIHRGIELTLQIQDAVG KATLKEFME LAGA
Sbjct: 421 VAHFIHRGIELTLQIQDAVGVKATLKEFMEKLAGA 455
>ref|NP_001029454.1| serine hydroxymethyltransferase, mitochondrial precursor [Bos
taurus].
Length = 504
Score = 590 bits (1521), Expect = e-168
Identities = 282/426 (66%), Positives = 342/426 (80%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 47 ESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN A YTAL++PH RIMGLDL
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 166
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++P TG I+YD+L ARLF P+LIIAGTS
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTS 226
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H +V+TTTHKTLRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 286
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGV++VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 287 SGLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 346
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y Q++ N +A+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 347 FREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 406
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSRG LE+DF++V FI G+ + L+++
Sbjct: 407 ANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTKLQ 466
Query: 1458 TLKEFM 1475
K F+
Sbjct: 467 DFKSFL 472
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 63,335,552
Number of extensions: 2173568
Number of successful extensions: 11281
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11211
Number of HSP's successfully gapped: 2
Length of query: 500
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 394
Effective length of database: 14,174,046
Effective search space: 5584574124
Effective search space used: 5584574124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007388
(1500 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851819.1| PREDICTED: similar to serine hydroxymethyltrans... 842 0.0
Alignment gi|XP_546655.2| PREDICTED: similar to serine hydroxymethyltrans... 815 0.0
Alignment gi|XP_864413.1| PREDICTED: similar to serine hydroxymethyltrans... 807 0.0
Alignment gi|XP_864431.1| PREDICTED: similar to serine hydroxymethyltrans... 747 0.0
Alignment gi|XP_849244.1| PREDICTED: similar to serine hydroxymethyltrans... 587 e-167
Alignment gi|XP_858302.1| PREDICTED: similar to serine hydroxymethyltrans... 577 e-165
Alignment gi|XP_864452.1| PREDICTED: similar to serine hydroxymethyltrans... 517 e-146
Alignment gi|XP_858220.1| PREDICTED: similar to serine hydroxymethyltrans... 132 9e-31
>ref|XP_851819.1| PREDICTED: similar to serine hydroxymethyltransferase 1 (soluble)
isoform 1 isoform 2 [Canis familiaris].
Length = 483
Score = 842 bits (2174), Expect = 0.0
Identities = 409/447 (91%), Positives = 434/447 (97%)
Frame = +3
Query: 159 DADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLN 338
D DLWSSHDKML +PLKD+D EVYNIIKKES+RQRVGLELIASENF SRAVLEALGSCLN
Sbjct: 10 DTDLWSSHDKMLAEPLKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLN 69
Query: 339 NKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTA 518
NKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQVYGLDP+CWGVNVQPYSGSPANFAVYTA
Sbjct: 70 NKYSEGYPGQRYYGGTEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTA 129
Query: 519 LVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENA 698
LVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+P+TGYINYD+LEENA
Sbjct: 130 LVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENA 189
Query: 699 RLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 878
RLFHPKLIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV
Sbjct: 190 RLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 249
Query: 879 VSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIA 1058
VSTTTHKTLRGCRAG+IFYR+GVRSVDPKTG+ET YNLESLINSAVFPGLQGGPHNHAIA
Sbjct: 250 VSTTTHKTLRGCRAGIIFYRRGVRSVDPKTGKETLYNLESLINSAVFPGLQGGPHNHAIA 309
Query: 1059 GVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDG 1238
GVAVALKQAMTPEFR+YQ QVVANCR LA+TLM LGYKVVTGGSDNHLILVDLRSKGTDG
Sbjct: 310 GVAVALKQAMTPEFRLYQHQVVANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDG 369
Query: 1239 GRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIE 1418
GRAEKVLEAC+IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLE++FQ+VA+F+HRGIE
Sbjct: 370 GRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIE 429
Query: 1419 LTLQIQDAVGAKATLKEFMETLAGAGK 1499
LTLQIQ+ +GA+ATLKEF E LAG K
Sbjct: 430 LTLQIQNDIGARATLKEFREKLAGDEK 456
>ref|XP_546655.2| PREDICTED: similar to serine hydroxymethyltransferase 1 (soluble)
isoform 1 isoform 1 [Canis familiaris].
Length = 483
Score = 815 bits (2104), Expect = 0.0
Identities = 399/447 (89%), Positives = 424/447 (94%)
Frame = +3
Query: 159 DADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLN 338
D DLWSSHDKML +PLKD+D EVYNIIKKES+RQRVGLELIASENF SRAVLEALGSCLN
Sbjct: 10 DTDLWSSHDKMLAEPLKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLN 69
Query: 339 NKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTA 518
NKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQVYGLDP+CWGVNVQPYSGSPANFAVYTA
Sbjct: 70 NKYSEGYPGQRYYGGTEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTA 129
Query: 519 LVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENA 698
LVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+P+TGYINYD+LEENA
Sbjct: 130 LVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENA 189
Query: 699 RLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 878
RLFHPKLIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV
Sbjct: 190 RLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 249
Query: 879 VSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIA 1058
VSTTTHKTLRGCRAG+IFYR+G + T YNLESLINSAVFPGLQGGPHNHAIA
Sbjct: 250 VSTTTHKTLRGCRAGIIFYRRGGKYGAVGQPEGTLYNLESLINSAVFPGLQGGPHNHAIA 309
Query: 1059 GVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDG 1238
GVAVALKQAMTPEFR+YQ QVVANCR LA+TLM LGYKVVTGGSDNHLILVDLRSKGTDG
Sbjct: 310 GVAVALKQAMTPEFRLYQHQVVANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDG 369
Query: 1239 GRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIE 1418
GRAEKVLEAC+IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLE++FQ+VA+F+HRGIE
Sbjct: 370 GRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIE 429
Query: 1419 LTLQIQDAVGAKATLKEFMETLAGAGK 1499
LTLQIQ+ +GA+ATLKEF E LAG K
Sbjct: 430 LTLQIQNDIGARATLKEFREKLAGDEK 456
>ref|XP_864413.1| PREDICTED: similar to serine hydroxymethyltransferase 1 (soluble)
isoform 1 isoform 3 [Canis familiaris].
Length = 469
Score = 807 bits (2084), Expect = 0.0
Identities = 398/447 (89%), Positives = 420/447 (93%)
Frame = +3
Query: 159 DADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLN 338
D DLWSSHDKML +PLKD+D EVYNIIKKES+RQRVGLELIASENF SRAVLEALGSCLN
Sbjct: 10 DTDLWSSHDKMLAEPLKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLN 69
Query: 339 NKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTA 518
NKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQVYGLDP+CWGVNVQPYSGSPANFAVYTA
Sbjct: 70 NKYSEGYPGQRYYGGTEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTA 129
Query: 519 LVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENA 698
LVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYK ENA
Sbjct: 130 LVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYK--------------ENA 175
Query: 699 RLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 878
RLFHPKLIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV
Sbjct: 176 RLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 235
Query: 879 VSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIA 1058
VSTTTHKTLRGCRAG+IFYR+GVRSVDPKTG+ET YNLESLINSAVFPGLQGGPHNHAIA
Sbjct: 236 VSTTTHKTLRGCRAGIIFYRRGVRSVDPKTGKETLYNLESLINSAVFPGLQGGPHNHAIA 295
Query: 1059 GVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDG 1238
GVAVALKQAMTPEFR+YQ QVVANCR LA+TLM LGYKVVTGGSDNHLILVDLRSKGTDG
Sbjct: 296 GVAVALKQAMTPEFRLYQHQVVANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDG 355
Query: 1239 GRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIE 1418
GRAEKVLEAC+IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLE++FQ+VA+F+HRGIE
Sbjct: 356 GRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIE 415
Query: 1419 LTLQIQDAVGAKATLKEFMETLAGAGK 1499
LTLQIQ+ +GA+ATLKEF E LAG K
Sbjct: 416 LTLQIQNDIGARATLKEFREKLAGDEK 442
>ref|XP_864431.1| PREDICTED: similar to serine hydroxymethyltransferase 1 (soluble)
isoform 2 isoform 4 [Canis familiaris].
Length = 444
Score = 747 bits (1929), Expect = 0.0
Identities = 372/447 (83%), Positives = 396/447 (88%)
Frame = +3
Query: 159 DADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLN 338
D DLWSSHDKML +PLKD+D EVYNIIKKES+RQRVGLELIASENF SRAVLEALGSCLN
Sbjct: 10 DTDLWSSHDKMLAEPLKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLN 69
Query: 339 NKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTA 518
NKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQVYGLDP+CWGVNVQPYSGSPANFAVYTA
Sbjct: 70 NKYSEGYPGQRYYGGTEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTA 129
Query: 519 LVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENA 698
LVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+P+TGYINYD+LEENA
Sbjct: 130 LVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENA 189
Query: 699 RLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 878
RLFHPKLIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV
Sbjct: 190 RLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 249
Query: 879 VSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIA 1058
VSTTTHKTLRGCRAG+IFYR+
Sbjct: 250 VSTTTHKTLRGCRAGIIFYRR--------------------------------------- 270
Query: 1059 GVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDG 1238
GVAVALKQAMTPEFR+YQ QVVANCR LA+TLM LGYKVVTGGSDNHLILVDLRSKGTDG
Sbjct: 271 GVAVALKQAMTPEFRLYQHQVVANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDG 330
Query: 1239 GRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIE 1418
GRAEKVLEAC+IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLE++FQ+VA+F+HRGIE
Sbjct: 331 GRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIE 390
Query: 1419 LTLQIQDAVGAKATLKEFMETLAGAGK 1499
LTLQIQ+ +GA+ATLKEF E LAG K
Sbjct: 391 LTLQIQNDIGARATLKEFREKLAGDEK 417
>ref|XP_849244.1| PREDICTED: similar to serine hydroxymethyltransferase 2
(mitochondrial) isoform 2 [Canis familiaris].
Length = 505
Score = 587 bits (1513), Expect = e-167
Identities = 282/426 (66%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 48 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 107
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN A YTAL++PH RIMGLDL
Sbjct: 108 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 167
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K++SATSIFFESMPYK++P TG I+YD+L ARLF P+LIIAGTS
Sbjct: 168 PDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTS 227
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H VV+TTTHKTLRG R
Sbjct: 228 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGAR 287
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKG+R+VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 288 SGLIFYRKGMRAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPT 347
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 348 FREYALQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 407
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L++++
Sbjct: 408 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVHIGLEVKNKTAKLQ 467
Query: 1458 TLKEFM 1475
K F+
Sbjct: 468 DFKSFL 473
>ref|XP_858302.1| PREDICTED: similar to serine hydroxymethyltransferase 2
(mitochondrial) isoform 4 [Canis familiaris].
Length = 505
Score = 577 bits (1488), Expect = e-165
Identities = 278/426 (65%), Positives = 336/426 (78%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 48 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 107
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN A YTAL++PH RIMGLDL
Sbjct: 108 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 167
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K++SATSIFFESMPYK++P TG I+YD+L ARLF P+LIIAGTS
Sbjct: 168 PDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTS 227
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H VV+TTTHKTLRG R
Sbjct: 228 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGAR 287
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKG+R+VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQ P
Sbjct: 288 SGLIFYRKGMRAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQVGEPT 347
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 348 LLQYALQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 407
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L++++
Sbjct: 408 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVHIGLEVKNKTAKLQ 467
Query: 1458 TLKEFM 1475
K F+
Sbjct: 468 DFKSFL 473
>ref|XP_864452.1| PREDICTED: similar to serine hydroxymethyltransferase 1 (soluble)
isoform 2 isoform 5 [Canis familiaris].
Length = 403
Score = 517 bits (1331), Expect = e-146
Identities = 245/262 (93%), Positives = 258/262 (98%)
Frame = +3
Query: 159 DADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLN 338
D DLWSSHDKML +PLKD+D EVYNIIKKES+RQRVGLELIASENF SRAVLEALGSCLN
Sbjct: 10 DTDLWSSHDKMLAEPLKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLN 69
Query: 339 NKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTA 518
NKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQVYGLDP+CWGVNVQPYSGSPANFAVYTA
Sbjct: 70 NKYSEGYPGQRYYGGTEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTA 129
Query: 519 LVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENA 698
LVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+P+TGYINYD+LEENA
Sbjct: 130 LVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENA 189
Query: 699 RLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 878
RLFHPKLIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV
Sbjct: 190 RLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 249
Query: 879 VSTTTHKTLRGCRAGMIFYRKG 944
VSTTTHKTLRGCRAG+IFYR+G
Sbjct: 250 VSTTTHKTLRGCRAGIIFYRRG 271
Score = 190 bits (483), Expect = 3e-48
Identities = 99/132 (75%), Positives = 111/132 (84%), Gaps = 3/132 (2%)
Frame = +3
Query: 1113 CQVVANCRALAKTLMGLGYKVV---TGGSDNHLILVDLRSKGTDGGRAEKVLEACNIACN 1283
C VV+ KTL G ++ GGSDNHLILVDLRSKGTDGGRAEKVLEAC+IACN
Sbjct: 247 CHVVST--TTHKTLRGCRAGIIFYRRGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 304
Query: 1284 KNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKATL 1463
KNTCPGDKSALRPSGLRLGTPALTSRGLLE++FQ+VA+F+HRGIELTLQIQ+ +GA+ATL
Sbjct: 305 KNTCPGDKSALRPSGLRLGTPALTSRGLLEKEFQKVAQFVHRGIELTLQIQNDIGARATL 364
Query: 1464 KEFMETLAGAGK 1499
KEF E LAG K
Sbjct: 365 KEFREKLAGDEK 376
>ref|XP_858220.1| PREDICTED: similar to serine hydroxymethyltransferase 2
(mitochondrial) isoform 3 [Canis familiaris].
Length = 142
Score = 132 bits (332), Expect = 9e-31
Identities = 61/89 (68%), Positives = 73/89 (82%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 48 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 107
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWG 464
GG E +DE+ELLCQRRAL+ + LDP WG
Sbjct: 108 GGAEVVDEIELLCQRRALEAFDLDPAQWG 136
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 66,151,240
Number of extensions: 2242428
Number of successful extensions: 11331
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 11221
Number of HSP's successfully gapped: 10
Length of query: 500
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 393
Effective length of database: 15,307,552
Effective search space: 6015867936
Effective search space used: 6015867936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007388
(1500 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004160.3| serine hydroxymethyltransferase, cytosolic isof... 834 0.0
Alignment gi|NP_683718.1| serine hydroxymethyltransferase, cytosolic isof... 743 0.0
Alignment gi|NP_001159831.1| serine hydroxymethyltransferase, mitochondri... 586 e-167
Alignment gi|NP_001159830.1| serine hydroxymethyltransferase, mitochondri... 586 e-167
Alignment gi|NP_001159829.1| serine hydroxymethyltransferase, mitochondri... 586 e-167
Alignment gi|NP_005403.2| serine hydroxymethyltransferase, mitochondrial ... 586 e-167
Alignment gi|NP_001159828.1| serine hydroxymethyltransferase, mitochondri... 566 e-161
>ref|NP_004160.3| serine hydroxymethyltransferase, cytosolic isoform 1 [Homo sapiens].
Length = 483
Score = 834 bits (2154), Expect = 0.0
Identities = 409/454 (90%), Positives = 431/454 (94%)
Frame = +3
Query: 129 MATPDSGAPWDADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRA 308
M P +GA DADLWSSHDKML QPLKDSD+EVYNIIKKES+RQRVGLELIASENFASRA
Sbjct: 1 MTMPVNGAHKDADLWSSHDKMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRA 60
Query: 309 VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSG 488
VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELE LCQ+RALQ Y LDPQCWGVNVQPYSG
Sbjct: 61 VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSG 120
Query: 489 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGY 668
SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+PDTGY
Sbjct: 121 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGY 180
Query: 669 INYDRLEENARLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGV 848
INYD+LEENARLFHPKLIIAGTSCYSRNL+YARLR+IAD+NGAYLMADMAHISGLVAAGV
Sbjct: 181 INYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGV 240
Query: 849 VPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGL 1028
VPSPFEHCHVV+TTTHKTLRGCRAGMIFYRKGV+SVDPKTG+E YNLESLINSAVFPGL
Sbjct: 241 VPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPKTGKEILYNLESLINSAVFPGL 300
Query: 1029 QGGPHNHAIAGVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLIL 1208
QGGPHNHAIAGVAVALKQAMT EF+VYQ QVVANCRAL++ L LGYK+VTGGSDNHLIL
Sbjct: 301 QGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLIL 360
Query: 1209 VDLRSKGTDGGRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQE 1388
VDLRSKGTDGGRAEKVLEAC+IACNKNTCPGD+SALRPSGLRLGTPALTSRGLLE+DFQ+
Sbjct: 361 VDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQK 420
Query: 1389 VARFIHRGIELTLQIQDAVGAKATLKEFMETLAG 1490
VA FIHRGIELTLQIQ G +ATLKEF E LAG
Sbjct: 421 VAHFIHRGIELTLQIQSDTGVRATLKEFKERLAG 454
>ref|NP_683718.1| serine hydroxymethyltransferase, cytosolic isoform 2 [Homo sapiens].
Length = 444
Score = 743 bits (1918), Expect = 0.0
Identities = 374/454 (82%), Positives = 394/454 (86%)
Frame = +3
Query: 129 MATPDSGAPWDADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRA 308
M P +GA DADLWSSHDKML QPLKDSD+EVYNIIKKES+RQRVGLELIASENFASRA
Sbjct: 1 MTMPVNGAHKDADLWSSHDKMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRA 60
Query: 309 VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSG 488
VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELE LCQ+RALQ Y LDPQCWGVNVQPYSG
Sbjct: 61 VLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSG 120
Query: 489 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGY 668
SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV+PDTGY
Sbjct: 121 SPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGY 180
Query: 669 INYDRLEENARLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGV 848
INYD+LEENARLFHPKLIIAGTSCYSRNL+YARLR+IAD+NGAYLMADMAHISGLVAAGV
Sbjct: 181 INYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGV 240
Query: 849 VPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGL 1028
VPSPFEHCHVV+TTTHKTLRGCRAGMIFYRK
Sbjct: 241 VPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK----------------------------- 271
Query: 1029 QGGPHNHAIAGVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLIL 1208
GVAVALKQAMT EF+VYQ QVVANCRAL++ L LGYK+VTGGSDNHLIL
Sbjct: 272 ----------GVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLIL 321
Query: 1209 VDLRSKGTDGGRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQE 1388
VDLRSKGTDGGRAEKVLEAC+IACNKNTCPGD+SALRPSGLRLGTPALTSRGLLE+DFQ+
Sbjct: 322 VDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQK 381
Query: 1389 VARFIHRGIELTLQIQDAVGAKATLKEFMETLAG 1490
VA FIHRGIELTLQIQ G +ATLKEF E LAG
Sbjct: 382 VAHFIHRGIELTLQIQSDTGVRATLKEFKERLAG 415
>ref|NP_001159831.1| serine hydroxymethyltransferase, mitochondrial isoform 3 [Homo
sapiens].
Length = 483
Score = 586 bits (1511), Expect = e-167
Identities = 282/426 (66%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN AVYTAL++PH RIMGLDL
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++P TG I+Y++L ARLF P+LIIAGTS
Sbjct: 146 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 205
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H +V+TTTHKTLRG R
Sbjct: 206 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 265
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGV++VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 266 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 325
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 326 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 385
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L+++
Sbjct: 386 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQ 445
Query: 1458 TLKEFM 1475
K F+
Sbjct: 446 DFKSFL 451
>ref|NP_001159830.1| serine hydroxymethyltransferase, mitochondrial isoform 3 [Homo
sapiens].
Length = 483
Score = 586 bits (1511), Expect = e-167
Identities = 282/426 (66%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN AVYTAL++PH RIMGLDL
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++P TG I+Y++L ARLF P+LIIAGTS
Sbjct: 146 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 205
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H +V+TTTHKTLRG R
Sbjct: 206 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 265
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGV++VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 266 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 325
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 326 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 385
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L+++
Sbjct: 386 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQ 445
Query: 1458 TLKEFM 1475
K F+
Sbjct: 446 DFKSFL 451
>ref|NP_001159829.1| serine hydroxymethyltransferase, mitochondrial isoform 3 [Homo
sapiens].
Length = 483
Score = 586 bits (1511), Expect = e-167
Identities = 282/426 (66%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN AVYTAL++PH RIMGLDL
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++P TG I+Y++L ARLF P+LIIAGTS
Sbjct: 146 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 205
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H +V+TTTHKTLRG R
Sbjct: 206 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 265
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGV++VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 266 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 325
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 326 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 385
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L+++
Sbjct: 386 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQ 445
Query: 1458 TLKEFM 1475
K F+
Sbjct: 446 DFKSFL 451
>ref|NP_005403.2| serine hydroxymethyltransferase, mitochondrial isoform 1 precursor
[Homo sapiens].
Length = 504
Score = 586 bits (1511), Expect = e-167
Identities = 282/426 (66%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 47 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN AVYTAL++PH RIMGLDL
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 166
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++P TG I+Y++L ARLF P+LIIAGTS
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 226
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H +V+TTTHKTLRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 286
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGV++VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 287 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 346
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 347 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 406
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L+++
Sbjct: 407 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQ 466
Query: 1458 TLKEFM 1475
K F+
Sbjct: 467 DFKSFL 472
>ref|NP_001159828.1| serine hydroxymethyltransferase, mitochondrial isoform 2 precursor
[Homo sapiens].
Length = 494
Score = 566 bits (1460), Expect = e-161
Identities = 277/426 (65%), Positives = 332/426 (77%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 47 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN AVYTAL++PH RIMGLDL
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 166
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++ L ARLF P+LIIAGTS
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLN----------LALTARLFRPRLIIAGTS 216
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF+H +V+TTTHKTLRG R
Sbjct: 217 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 276
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGV++VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 277 SGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 336
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG RAE+VLE +I
Sbjct: 337 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSIT 396
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L+++
Sbjct: 397 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAKLQ 456
Query: 1458 TLKEFM 1475
K F+
Sbjct: 457 DFKSFL 462
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 64,448,584
Number of extensions: 2156875
Number of successful extensions: 10476
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10396
Number of HSP's successfully gapped: 8
Length of query: 500
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 393
Effective length of database: 14,770,016
Effective search space: 5804616288
Effective search space used: 5804616288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007388
(1500 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033197.2| serine hydroxymethyltransferase, cytosolic [Mus... 820 0.0
Alignment gi|NP_082506.1| serine hydroxymethyltransferase, mitochondrial ... 580 e-166
>ref|NP_033197.2| serine hydroxymethyltransferase, cytosolic [Mus musculus].
Length = 478
Score = 820 bits (2118), Expect = 0.0
Identities = 402/447 (89%), Positives = 423/447 (94%)
Frame = +3
Query: 159 DADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLN 338
DA LW+SH+KML QPLKDSD EVY+IIKKES+RQRVGLELIASENFASRAVLEALGSCLN
Sbjct: 5 DATLWASHEKMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLN 64
Query: 339 NKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTA 518
NKYSEGYPGQRYYGGTEFIDELE+LCQ+RALQ Y LDPQCWGVNVQPYSGSPANFAVYTA
Sbjct: 65 NKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTA 124
Query: 519 LVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENA 698
LVEPHGRIMGLDLPDGGHLTHGFMT+KKKISATSIFFESMPYKV P+TGYINYD+LEENA
Sbjct: 125 LVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENA 184
Query: 699 RLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 878
LFHPKLIIAGTSCYSRNLDYARLR+IADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV
Sbjct: 185 SLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHV 244
Query: 879 VSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIA 1058
V+TTTHKTLRGCRAGMIFYRKGVRSVDPKTG+ET Y LESLINSAVFPGLQGGPHNHAIA
Sbjct: 245 VTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIA 304
Query: 1059 GVAVALKQAMTPEFRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDG 1238
GVAVALKQAMT EF++YQ QV+ANCRAL+ L LGYK+VTGGSDNHLIL+DLRSKGTDG
Sbjct: 305 GVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDG 364
Query: 1239 GRAEKVLEACNIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIE 1418
GRAEKVLEAC+IACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQ+VA FIHRGIE
Sbjct: 365 GRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIE 424
Query: 1419 LTLQIQDAVGAKATLKEFMETLAGAGK 1499
LTLQIQ + KATLKEF E LAG K
Sbjct: 425 LTLQIQSHMATKATLKEFKEKLAGDEK 451
>ref|NP_082506.1| serine hydroxymethyltransferase, mitochondrial [Mus musculus].
Length = 504
Score = 580 bits (1496), Expect = e-166
Identities = 280/426 (65%), Positives = 338/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 47 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN A YTAL++PH RIMGLDL
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 166
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+M++ K+ISATSIFFESMPYK++P TG I+YD+L ARLF P+LIIAGTS
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFRPRLIIAGTS 226
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPF++ VV+TTTHKTLRG R
Sbjct: 227 AYARLIDYARMREVCDEVRAHLLADMAHISGLVAAKVIPSPFKYADVVTTTTHKTLRGAR 286
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGVR+VDPKTG+E Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 287 SGLIFYRKGVRTVDPKTGKEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 346
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N +A+A L+ GY +V+GG+D HL+LVDLR KG DG RAE+VLE +I
Sbjct: 347 FREYSLQVLRNAQAMADALLKRGYSLVSGGTDTHLVLVDLRPKGLDGARAERVLELVSIT 406
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLG PALTSR E+DF+ V FI G+ + L+++
Sbjct: 407 ANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAKLQ 466
Query: 1458 TLKEFM 1475
K F+
Sbjct: 467 DFKSFL 472
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 53,832,867
Number of extensions: 1749266
Number of successful extensions: 8120
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8043
Number of HSP's successfully gapped: 2
Length of query: 500
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 394
Effective length of database: 12,433,743
Effective search space: 4898894742
Effective search space used: 4898894742
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007388
(1500 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355531.1| PREDICTED: serine hydroxymethyltransferase, ... 592 e-169
Alignment gi|XP_003126345.1| PREDICTED: serine hydroxymethyltransferase, ... 592 e-169
Alignment gi|XP_003356936.1| PREDICTED: serine hydroxymethyltransferase, ... 342 4e-94
Alignment gi|XP_003361404.1| PREDICTED: serine hydroxymethyltransferase, ... 308 4e-84
>ref|XP_003355531.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Sus
scrofa].
Length = 505
Score = 592 bits (1526), Expect = e-169
Identities = 286/426 (67%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 48 ESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 107
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN A YTAL++PH RIMGLDL
Sbjct: 108 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 167
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+MT+ K+ISATSIFFESMPYK++P TG I+YD+L ARLF P+LIIAGTS
Sbjct: 168 PDGGHLTHGYMTDVKRISATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTS 227
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPFEH VV+TTTHKTLRG R
Sbjct: 228 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFEHADVVTTTTHKTLRGAR 287
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGVR+VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 288 SGLIFYRKGVRTVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 347
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG R E+VLE +I
Sbjct: 348 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARVERVLELVSIT 407
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLGTPALTSR E+DF++V FI G+ + L+++
Sbjct: 408 ANKNTCPGDRSAITPGGLRLGTPALTSRQFREDDFRKVVAFIDEGVSIGLEVKSKTTKLQ 467
Query: 1458 TLKEFM 1475
K F+
Sbjct: 468 DFKSFL 473
>ref|XP_003126345.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like [Sus
scrofa].
Length = 483
Score = 592 bits (1526), Expect = e-169
Identities = 286/426 (67%), Positives = 340/426 (79%)
Frame = +3
Query: 198 QPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYY 377
+ L DSD E++ ++++E RQ GLELIASENF SRA LEALGSCLNNKYSEGYPG+RYY
Sbjct: 26 ESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 378 GGTEFIDELELLCQRRALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 557
GG E +DE+ELLCQRRAL+ + LDP WGVNVQPYSGSPAN A YTAL++PH RIMGLDL
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 145
Query: 558 PDGGHLTHGFMTEKKKISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTS 737
PDGGHLTHG+MT+ K+ISATSIFFESMPYK++P TG I+YD+L ARLF P+LIIAGTS
Sbjct: 146 PDGGHLTHGYMTDVKRISATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTS 205
Query: 738 CYSRNLDYARLRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 917
Y+R +DYAR+R + D+ A+L+ADMAHISGLVAA V+PSPFEH VV+TTTHKTLRG R
Sbjct: 206 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFEHADVVTTTTHKTLRGAR 265
Query: 918 AGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 1097
+G+IFYRKGVR+VDPKTGRE Y E IN AVFP LQGGPHNHAIA VAVALKQA TP
Sbjct: 266 SGLIFYRKGVRTVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPM 325
Query: 1098 FRVYQCQVVANCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIA 1277
FR Y QV+ N RA+A L+ GY +V+GG+DNHL+LVDLR KG DG R E+VLE +I
Sbjct: 326 FREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARVERVLELVSIT 385
Query: 1278 CNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQEVARFIHRGIELTLQIQDAVGAKA 1457
NKNTCPGD+SA+ P GLRLGTPALTSR E+DF++V FI G+ + L+++
Sbjct: 386 ANKNTCPGDRSAITPGGLRLGTPALTSRQFREDDFRKVVAFIDEGVSIGLEVKSKTTKLQ 445
Query: 1458 TLKEFM 1475
K F+
Sbjct: 446 DFKSFL 451
>ref|XP_003356936.1| PREDICTED: serine hydroxymethyltransferase, mitochondrial-like,
partial [Sus scrofa].
Length = 331
Score = 342 bits (876), Expect = 4e-94
Identities = 162/219 (73%), Positives = 188/219 (85%)
Frame = +3
Query: 267 GLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELELLCQRRALQVYGL 446
GL+ SENF SRA LEALGSCLNNKYSEGYPG+RYYGG E +DE+ELLCQRRAL+ + L
Sbjct: 111 GLKQGTSENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDL 170
Query: 447 DPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTEKKKISATSIF 626
DP WGVNVQPYSGSPAN A YTAL++PH RIMGLDLPDGGHLTHG+MT+ K+ISATSIF
Sbjct: 171 DPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDLPDGGHLTHGYMTDVKRISATSIF 230
Query: 627 FESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTSCYSRNLDYARLRRIADDNGAYLM 806
FESMPYK++P TG I+YD+L ARLF P+LIIAGTS Y+R +DYAR+R + D+ A+L+
Sbjct: 231 FESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLL 290
Query: 807 ADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAG 923
ADMAHISGLVAA V+PSPFEH VV+TTTHKTLRG R+G
Sbjct: 291 ADMAHISGLVAAKVIPSPFEHADVVTTTTHKTLRGARSG 329
Score = 92.4 bits (228), Expect = 6e-19
Identities = 52/111 (46%), Positives = 64/111 (57%)
Frame = +3
Query: 768 LRRIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGV 947
LR++ + +G AH S + +VP + + H R+G+IFYRKGV
Sbjct: 21 LRKLPETHGLLFYGLAAHYSFCSSKAMVPK-----FLTTYVLH------RSGLIFYRKGV 69
Query: 948 RSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEF 1100
R+VDPKTGRE Y E IN AVFP LQGGPHNHAIA VA LKQ + F
Sbjct: 70 RTVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAGGLKQGTSENF 120
>ref|XP_003361404.1| PREDICTED: serine hydroxymethyltransferase, cytosolic [Sus scrofa].
Length = 506
Score = 308 bits (790), Expect = 4e-84
Identities = 190/334 (56%), Positives = 202/334 (60%), Gaps = 5/334 (1%)
Frame = +3
Query: 423 RALQVYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTEKK 602
RALQVYGLDPQCWGVNVQPYSGSPANFAVYTAL G + + +
Sbjct: 171 RALQVYGLDPQCWGVNVQPYSGSPANFAVYTALASSCRPGSGWNAS-----SPAICAQLS 225
Query: 603 KISATSIFFESMPYKVDPDTGYINYDRLEENARLFHPKLIIAGTSCYSRNLDYARLRRIA 782
+ + VDPDTGYIN Y R + ARL
Sbjct: 226 EPALPGHLACHSGCWVDPDTGYIN----------------------YDRLEENARL---- 259
Query: 783 DDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMI----FYRKGVR 950
H ++A G P C+ + LR R ++ R V
Sbjct: 260 -----------FHPKLIIAGG---GPGTSCYS-RNLDYARLRRIRVPVLEPVWLSRWDVH 304
Query: 951 SVDPKTGRETRYNLESL-INSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRVYQCQVVA 1127
P R INSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRVYQCQVVA
Sbjct: 305 FSPPXRCRAPXXXXXXXXINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRVYQCQVVA 364
Query: 1128 NCRALAKTLMGLGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACNIACNKNTCPGDK 1307
NCRALAKTLMGLGYKVVTGGSDNHLILVDL GGRAEKVLEACNIACNKNTCPGDK
Sbjct: 365 NCRALAKTLMGLGYKVVTGGSDNHLILVDLXXXXXXGGRAEKVLEACNIACNKNTCPGDK 424
Query: 1308 SALRPSGLRLGTPALTSRGLLEEDFQEVARFIHR 1409
SALRPSGLRLGTPALTSRGLLEEDFQEVARFIHR
Sbjct: 425 SALRPSGLRLGTPALTSRGLLEEDFQEVARFIHR 458
Score = 104 bits (260), Expect = 1e-22
Identities = 58/92 (63%), Positives = 63/92 (68%), Gaps = 6/92 (6%)
Frame = +3
Query: 129 MATPDSGAPWDADLWSSHDKMLVQPLKDSDLEVYNIIKKESHRQRVGLELIASENFASRA 308
MATPDSGAPWDADLWSSHDKMLVQPLKDSDLEV R R +++S + A
Sbjct: 1 MATPDSGAPWDADLWSSHDKMLVQPLKDSDLEV---------RLRGFSGVLSSASHRKAA 51
Query: 309 VLE------ALGSCLNNKYSEGYPGQRYYGGT 386
VL ALGSCLNNKYSEGYPGQR G+
Sbjct: 52 VLRPALWAGALGSCLNNKYSEGYPGQRKQPGS 83
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 41,023,173
Number of extensions: 1412072
Number of successful extensions: 7260
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7208
Number of HSP's successfully gapped: 8
Length of query: 500
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 397
Effective length of database: 8,779,541
Effective search space: 3485477777
Effective search space used: 3485477777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007388
(1500 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL894237.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 250 2e-63
Sscrofa_Chr08 64 2e-07
Sscrofa_Chr05 64 2e-07
>gb|GL894237.1| Sus scrofa unplaced genomic scaffold chrU_scaffold2922
Length = 51498
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 1059 ggggtcgcggtggctctgaagcaggccatgaccccggagttcagagtctaccagtgccag 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31126 ggggtcgcggtggctctgaagcaggccatgaccccggagttcagagtctaccagtgccag 31185
Query: 1119 gtggtggccaactgcagagccctggccaagaccttgatggggctgggctacaaggtagtc 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31186 gtggtggccaactgcagagccctggccaagaccttgatggggctgggctacaaggtagtc 31245
Query: 1179 acaggt 1184
||||||
Sbjct: 31246 acaggt 31251
Score = 234 bits (118), Expect = 1e-58
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 109 ggcgacacggaagcggtgcgatggcgactcccgacagcggggccccctgggatgctgacc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23566 ggcgacacggaagcggtgcgatggcgactcccgacagcggggccccctgggatgctgacc 23625
Query: 169 tgtggtcctcccatgacaagatgctggtgcagcccctgaaggacagtgacctggaggt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23626 tgtggtcctcccatgacaagatgctggtgcagcccctgaaggacagtgacctggaggt 23683
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1298 aggtgacaagagcgccctgcggcccagcgggctgcgcctggggaccccggcactgacgtc 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33833 aggtgacaagagcgccctgcggcccagcgggctgcgcctggggaccccggcactgacgtc 33892
Query: 1358 ccgaggactcttggaagaagatttccaagaagtggcccggtttattcacagagg 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33893 ccgaggactcttggaagaagatttccaagaagtggcccggtttattcacagagg 33946
Score = 222 bits (112), Expect = 4e-55
Identities = 141/153 (92%), Gaps = 12/153 (7%)
Strand = Plus / Plus
Query: 646 aggtggacccggacacgggctacatcaactacgaccggctggaggagaacgctcgcctct 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28937 aggtggacccggacacgggctacatcaactacgaccggctggaggagaacgctcgcctct 28996
Query: 706 tccacccgaagctgatcatcg------------cagggaccagctgctactcccggaacc 753
||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 28997 tccacccgaagctgatcatcgcaggtggnggcccagggaccagctgctactcccggaacc 29056
Query: 754 tggactacgcccggctgcgcaggatcgccgacg 786
|||||||||||||||||||||||||||||||||
Sbjct: 29057 tggactacgcccggctgcgcaggatcgccgacg 29089
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 419 gaggcgagcgctgcaggtctacggcctggacccccagtgctggggcgtcaacgtccagcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26657 gaggcgagcgctgcaggtctacggcctggacccccagtgctggggcgtcaacgtccagcc 26716
Query: 479 ctactcagg 487
|||||||||
Sbjct: 26717 ctactcagg 26725
Score = 135 bits (68), Expect = 8e-29
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1236 ggcggcagggccgagaaggtgctggaagcctgtaacattgcctgcaacaagaacacctgc 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33042 ggcggcagggccgagaaggtgctggaagcctgtaacattgcctgcaacaagaacacctgc 33101
Query: 1296 ccaggtga 1303
||||||||
Sbjct: 33102 ccaggtga 33109
Score = 123 bits (62), Expect = 3e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 311 cctggaggccctgggctcctgcttgaataacaagtactccgaggggtacccaggccagag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24994 cctggaggccctgggctcctgcttgaataacaagtactccgaggggtacccaggccagag 25053
Query: 371 gt 372
||
Sbjct: 25054 gt 25055
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1001 catcaactccgctgtgttcccagggctgcaggggggcccccacaaccacgccattgccgg 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30621 catcaactccgctgtgttcccagggctgcaggggggcccccacaaccacgccattgccgg 30680
Score = 113 bits (57), Expect = 3e-22
Identities = 57/57 (100%)
Strand = Plus / Plus
Query: 553 acctgcccgatgggggccacctgacccacgggttcatgacggagaagaagaaaatct 609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27275 acctgcccgatgggggccacctgacccacgggttcatgacggagaagaagaaaatct 27331
Score = 91.7 bits (46), Expect = 1e-15
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 484 caggctcccctgcgaacttcgcggtgtacaccgccctggtggaacc 529
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 27129 caggctcccctgcgaacttcgcggtgtacaccgccctggtggaacc 27174
Score = 79.8 bits (40), Expect = 4e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 942 ggagtgcgcagcgtggaccccaagacgggcagagagacgc 981
||||||||||||||||||||||||||||||||||||||||
Sbjct: 30481 ggagtgcgcagcgtggaccccaagacgggcagagagacgc 30520
Score = 77.8 bits (39), Expect = 2e-11
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1180 caggtggctctgacaaccatctgatcctcgtggacctcc 1218
|||||||||||||||||||||||||||||||||||||||
Sbjct: 32903 caggtggctctgacaaccatctgatcctcgtggacctcc 32941
Score = 75.8 bits (38), Expect = 6e-11
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 73 ggctctgcctccctgtggctccgagaagtgggatcggg 110
||||||||||||||||||||||||||||||||||||||
Sbjct: 19013 ggctctgcctccctgtggctccgagaagtgggatcggg 19050
>Sscrofa_Chr08
|| Length = 148491826
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 289 agaacttcgccagccgagctgtcctggaggccctgggctcctgcttgaataacaagtact 348
|||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 20646096 agaacttctgcagccgagctgcgctggaggccctggggtcctgtctgaacaacaagtact 20646155
Query: 349 ccgaggggtacccaggccagaggt 372
| ||||| || || ||| ||||||
Sbjct: 20646156 cggagggttatcctggcaagaggt 20646179
>Sscrofa_Chr05
|| Length = 111506441
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Minus
Query: 289 agaacttcgccagccgagctgtcctggaggccctgggctcctgcttgaataacaagtact 348
|||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 24168224 agaacttctgcagccgagctgcgctggaggccctggggtcctgtctgaacaacaagtact 24168165
Query: 349 ccgaggggtacccaggccagaggt 372
| ||||| || || ||| ||||||
Sbjct: 24168164 cggagggttatcctggcaagaggt 24168141
Score = 63.9 bits (32), Expect = 2e-07
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 289 agaacttcgccagccgagctgtcctggaggccctgggctcctgcttgaataacaagtact 348
|||||||| ||||||||||| |||||||||||||| ||||| |||| ||||||||||
Sbjct: 24371342 agaacttctgcagccgagctgcgctggaggccctggggtcctgtctgaacaacaagtact 24371401
Query: 349 ccgaggggtacccaggccagaggt 372
| ||||| || || ||| ||||||
Sbjct: 24371402 cggagggttatcctggcaagaggt 24371425
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,164,186
Number of extensions: 196
Number of successful extensions: 196
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 17
Length of query: 1500
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1479
Effective length of database: 2,808,413,156
Effective search space: 4153643057724
Effective search space used: 4153643057724
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)