Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007393
(2093 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030280.1| cytosolic non-specific dipeptidase [Bos taur... 865 0.0
Alignment gi|NP_001095745.1| beta-Ala-His dipeptidase [Bos taurus]. 477 e-134
Alignment gi|NP_001033189.1| probable carboxypeptidase PM20D1 precursor [... 55 2e-07
>ref|NP_001030280.1| cytosolic non-specific dipeptidase [Bos taurus].
Length = 475
Score = 865 bits (2235), Expect = 0.0
Identities = 417/475 (87%), Positives = 442/475 (93%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKY+DENQDRY+KKLAEWVAIQSVSAWPEKRGEIR+MMEVAAADI QLGGSV+
Sbjct: 1 MSALTTLFKYVDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADIKQLGGSVQ 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE GKLGSDPQKKTVC+YGHLDVQPAALEDGWDSEPFTLVE
Sbjct: 61 LVDIGTQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKL+GRGATDDKGPVAGW+NALEAFQKT QEVPVN+RFCL LDALIFAQ
Sbjct: 121 RDGKLFGRGATDDKGPVAGWINALEAFQKTKQEVPVNVRFCLEGMEESGSEGLDALIFAQ 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD FFKDVD+VCISDNYWLGKNKPC+TYGLRGICYFFIEVECS++DLHSGVYGGSVHEAM
Sbjct: 181 KDAFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLI LMG LMD+KGKILIPGI+EAVAP+TEEEL LYD+IDFDL EY++DVGA TLLH C
Sbjct: 241 TDLIMLMGCLMDKKGKILIPGISEAVAPVTEEELELYDKIDFDLEEYARDVGAGTLLHGC 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV+GKFSIRLVP+MTPEVVSEQV SY
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVSEQVTSY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHY+AGRRAL+TVFGVEPDLTREGGSIPV
Sbjct: 361 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYLAGRRALKTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQLKN 1672
TLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR NYIEGTKM+AAYLYEVSQLK+
Sbjct: 421 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRRNYIEGTKMLAAYLYEVSQLKD 475
>ref|NP_001095745.1| beta-Ala-His dipeptidase [Bos taurus].
Length = 510
Score = 477 bits (1228), Expect = e-134
Identities = 235/481 (48%), Positives = 321/481 (66%), Gaps = 2/481 (0%)
Frame = +2
Query: 230 SASGGKMPALAALFKYIDENQDRYIKKLAEWVAIQS--VSAWPEKRGEIRKMMEVAAADI 403
SAS L +F+YID +QD +++ L EWVA++S V P R E+ +M +AA +
Sbjct: 26 SASTPPPGPLEKVFQYIDLHQDEFVQTLKEWVAVESDSVQPVPRLRRELLRMAGLAADRL 85
Query: 404 TQLGGSVELVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWD 583
LG V VD G Q+L DG +LGSDP+K TVC YGHLDVQPA EDGW
Sbjct: 86 RGLGARVASVDAGFQQLSDGQTLPIPPILLAELGSDPKKPTVCFYGHLDVQPARQEDGWL 145
Query: 584 SEPFTLVERDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXX 763
++P+TL E DGKLYGRG TD+KGPV W+NA+ AF+ ++ +PVNI+F +
Sbjct: 146 TDPYTLTEVDGKLYGRGTTDNKGPVLAWINAVSAFKALDEGLPVNIKFLIEGMEESGSLA 205
Query: 764 LDALIFAQKDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVY 943
L+ L+ +K FF VD + ISDN W+ + KP + YG RG YF +EV+C ++D HSG +
Sbjct: 206 LEELVRKEKSGFFSSVDCIVISDNLWISRRKPALIYGTRGNSYFTVEVKCRDQDFHSGTF 265
Query: 944 GGSVHEAMTDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVG 1123
GG ++E M DL+ L+GSL+D G+IL+PGI VAP+TEEE +Y+ ID D+ EY
Sbjct: 266 GGILNEPMADLVALLGSLVDASGRILVPGIYGHVAPVTEEEKRVYEAIDLDVEEYRNSSQ 325
Query: 1124 AETLLHDCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEV 1303
+ L D K+++LMH WRYPSLS+HGIEGAF GAKTVIP +VIGKFSIRLVP M V
Sbjct: 326 VKKFLFDTKEELLMHLWRYPSLSIHGIEGAFHEPGAKTVIPGRVIGKFSIRLVPHMDMSV 385
Query: 1304 VSEQVISYLTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLT 1483
V QV +L F++ +S N+ V M G PW+++ + Y+A +RA++TVFG EPD+
Sbjct: 386 VETQVKQHLEYIFSKRNSSNQMTVSMALGLHPWIANISDHQYLAAKRAIKTVFGTEPDMI 445
Query: 1484 REGGSIPVTLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQ 1663
R+G +IP+ Q+ T K+V++LP+G+ DDG HSQNEK+NR NYIEG+K+ AA+ E+++
Sbjct: 446 RDGSTIPIAKILQDTTQKSVIMLPLGAVDDGEHSQNEKINRWNYIEGSKLFAAFFLEMAK 505
Query: 1664 L 1666
L
Sbjct: 506 L 506
>ref|NP_001033189.1| probable carboxypeptidase PM20D1 precursor [Bos taurus].
Length = 503
Score = 55.5 bits (132), Expect = 2e-07
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +2
Query: 503 GSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALE 682
GSDP + + H+DV PA + GWD PF+ +ERDG +YGRG D+K + + ALE
Sbjct: 112 GSDPSMQPYILLAHIDVVPAP-DKGWDVPPFSGLERDGFIYGRGTLDNKNYLMAILQALE 170
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 91,130,941
Number of extensions: 2776038
Number of successful extensions: 10344
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10316
Number of HSP's successfully gapped: 3
Length of query: 697
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 588
Effective length of database: 14,074,782
Effective search space: 8275971816
Effective search space used: 8275971816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007393
(2093 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533372.2| PREDICTED: similar to Cytosolic nonspecific dip... 857 0.0
Alignment gi|XP_848453.1| PREDICTED: similar to Cytosolic nonspecific dip... 857 0.0
Alignment gi|XP_856256.1| PREDICTED: similar to Cytosolic nonspecific dip... 852 0.0
Alignment gi|XP_856165.1| PREDICTED: similar to Cytosolic nonspecific dip... 585 e-167
Alignment gi|XP_533371.2| PREDICTED: similar to carnosinase 1 [Canis fami... 503 e-142
Alignment gi|XP_856216.1| PREDICTED: similar to Cytosolic nonspecific dip... 469 e-132
Alignment gi|XP_848996.1| PREDICTED: similar to C10C5.4 [Canis familiaris]. 50 8e-06
>ref|XP_533372.2| PREDICTED: similar to Cytosolic nonspecific dipeptidase (Glutamate
carboxypeptidase-like protein 1) (CNDP dipeptidase 2)
isoform 1 [Canis familiaris].
Length = 473
Score = 857 bits (2213), Expect = 0.0
Identities = 411/473 (86%), Positives = 440/473 (93%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKY+DENQDRYIKKLAEWVAIQSVSAWPEKRGEIR+M+EVAAADI QLGGSVE
Sbjct: 1 MSALTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRRMLEVAAADIKQLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE GKLGSDPQKKTVC+YGHLDVQPAAL+DGWDSEPFTLVE
Sbjct: 61 LVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALDDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKLYGRGATDDKGPVAGW+NALEAFQKTNQE+PVN+RFCL LD LIF++
Sbjct: 121 RDGKLYGRGATDDKGPVAGWLNALEAFQKTNQEIPVNVRFCLEGMEESGSEGLDELIFSR 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD FFKDVD++CISDNYWLGK KPC+TYGLRGICYFFIEVECS++DLHSGVYGGSVHEAM
Sbjct: 181 KDTFFKDVDYICISDNYWLGKKKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLI LMGSL+D+KGKILIPGI+EAVAP+TEEEL LYD+IDFD+ EY++DVGAETLLH C
Sbjct: 241 TDLIMLMGSLVDKKGKILIPGISEAVAPVTEEELELYDKIDFDMEEYTRDVGAETLLHGC 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV+GKFSIRLVP+MTPEVVSEQV Y
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVSEQVTGY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
LTKKFAELHSPNKFKV+MGHGGKPWVSDFNHPHYMAGRRAL+TVFGVEPDLTREGGSIPV
Sbjct: 361 LTKKFAELHSPNKFKVFMGHGGKPWVSDFNHPHYMAGRRALKTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQL 1666
TLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR NYIEGTKM+AAYLYEVSQL
Sbjct: 421 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 473
>ref|XP_848453.1| PREDICTED: similar to Cytosolic nonspecific dipeptidase (Glutamate
carboxypeptidase-like protein 1) (CNDP dipeptidase 2)
isoform 3 [Canis familiaris].
Length = 473
Score = 857 bits (2213), Expect = 0.0
Identities = 411/473 (86%), Positives = 440/473 (93%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKY+DENQDRYIKKLAEWVAIQSVSAWPEKRGEIR+M+EVAAADI QLGGSVE
Sbjct: 1 MSALTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRRMLEVAAADIKQLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE GKLGSDPQKKTVC+YGHLDVQPAAL+DGWDSEPFTLVE
Sbjct: 61 LVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALDDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKLYGRGATDDKGPVAGW+NALEAFQKTNQE+PVN+RFCL LD LIF++
Sbjct: 121 RDGKLYGRGATDDKGPVAGWLNALEAFQKTNQEIPVNVRFCLEGMEESGSEGLDELIFSR 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD FFKDVD++CISDNYWLGK KPC+TYGLRGICYFFIEVECS++DLHSGVYGGSVHEAM
Sbjct: 181 KDTFFKDVDYICISDNYWLGKKKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLI LMGSL+D+KGKILIPGI+EAVAP+TEEEL LYD+IDFD+ EY++DVGAETLLH C
Sbjct: 241 TDLIMLMGSLVDKKGKILIPGISEAVAPVTEEELELYDKIDFDMEEYTRDVGAETLLHGC 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV+GKFSIRLVP+MTPEVVSEQV Y
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVSEQVTGY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
LTKKFAELHSPNKFKV+MGHGGKPWVSDFNHPHYMAGRRAL+TVFGVEPDLTREGGSIPV
Sbjct: 361 LTKKFAELHSPNKFKVFMGHGGKPWVSDFNHPHYMAGRRALKTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQL 1666
TLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR NYIEGTKM+AAYLYEVSQL
Sbjct: 421 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 473
>ref|XP_856256.1| PREDICTED: similar to Cytosolic nonspecific dipeptidase (Glutamate
carboxypeptidase-like protein 1) (CNDP dipeptidase 2)
isoform 6 [Canis familiaris].
Length = 473
Score = 852 bits (2201), Expect = 0.0
Identities = 410/473 (86%), Positives = 437/473 (92%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKY+DENQDRYIKKLAEWVAIQSVSAWPEKRGEIR+M+EVAAADI QLGGSVE
Sbjct: 1 MSALTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRRMLEVAAADIKQLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE GKLGSDPQKKTVC+YGHLDVQPAAL+DGWDSEPFTLVE
Sbjct: 61 LVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALDDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKLYGRGATDDKGPVAGW+NALEAFQKTNQE+PVN+RFCL LD LIF++
Sbjct: 121 RDGKLYGRGATDDKGPVAGWLNALEAFQKTNQEIPVNVRFCLEGMEESGSEGLDELIFSR 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD FFKDVD++CISDNYWLGK KPC+TYGLRGICYFFIEV C RDLHSGVYGGSVHEAM
Sbjct: 181 KDTFFKDVDYICISDNYWLGKKKPCITYGLRGICYFFIEVSCIFRDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLI LMGSL+D+KGKILIPGI+EAVAP+TEEEL LYD+IDFD+ EY++DVGAETLLH C
Sbjct: 241 TDLIMLMGSLVDKKGKILIPGISEAVAPVTEEELELYDKIDFDMEEYTRDVGAETLLHGC 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV+GKFSIRLVP+MTPEVVSEQV Y
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVSEQVTGY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
LTKKFAELHSPNKFKV+MGHGGKPWVSDFNHPHYMAGRRAL+TVFGVEPDLTREGGSIPV
Sbjct: 361 LTKKFAELHSPNKFKVFMGHGGKPWVSDFNHPHYMAGRRALKTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQL 1666
TLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR NYIEGTKM+AAYLYEVSQL
Sbjct: 421 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQL 473
>ref|XP_856165.1| PREDICTED: similar to Cytosolic nonspecific dipeptidase (Glutamate
carboxypeptidase-like protein 1) (CNDP dipeptidase 2)
isoform 4 [Canis familiaris].
Length = 389
Score = 585 bits (1508), Expect = e-167
Identities = 278/322 (86%), Positives = 302/322 (93%)
Frame = +2
Query: 701 QEVPVNIRFCLXXXXXXXXXXLDALIFAQKDQFFKDVDFVCISDNYWLGKNKPCVTYGLR 880
+E+PVN+RFCL LD LIF++KD FFKDVD++CISDNYWLGK KPC+TYGLR
Sbjct: 68 KEIPVNVRFCLEGMEESGSEGLDELIFSRKDTFFKDVDYICISDNYWLGKKKPCITYGLR 127
Query: 881 GICYFFIEVECSNRDLHSGVYGGSVHEAMTDLITLMGSLMDRKGKILIPGINEAVAPLTE 1060
GICYFFIEVECS++DLHSGVYGGSVHEAMTDLI LMGSL+D+KGKILIPGI+EAVAP+TE
Sbjct: 128 GICYFFIEVECSDKDLHSGVYGGSVHEAMTDLIMLMGSLVDKKGKILIPGISEAVAPVTE 187
Query: 1061 EELALYDQIDFDLAEYSKDVGAETLLHDCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTV 1240
EEL LYD+IDFD+ EY++DVGAETLLH CKKDILMHRWRYPSLSLHGIEGAFSGSGAKTV
Sbjct: 188 EELELYDKIDFDMEEYTRDVGAETLLHGCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTV 247
Query: 1241 IPRKVIGKFSIRLVPDMTPEVVSEQVISYLTKKFAELHSPNKFKVYMGHGGKPWVSDFNH 1420
IPRKV+GKFSIRLVP+MTPEVVSEQV YLTKKFAELHSPNKFKV+MGHGGKPWVSDFNH
Sbjct: 248 IPRKVVGKFSIRLVPNMTPEVVSEQVTGYLTKKFAELHSPNKFKVFMGHGGKPWVSDFNH 307
Query: 1421 PHYMAGRRALQTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPMGSADDGAHSQNEKL 1600
PHYMAGRRAL+TVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLP+GSADDGAHSQNEKL
Sbjct: 308 PHYMAGRRALKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKL 367
Query: 1601 NRHNYIEGTKMMAAYLYEVSQL 1666
NR NYIEGTKM+AAYLYEVSQL
Sbjct: 368 NRLNYIEGTKMLAAYLYEVSQL 389
Score = 123 bits (308), Expect = 8e-28
Identities = 60/68 (88%), Positives = 63/68 (92%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKY+DENQDRYIKKLAEWVAIQSVSAWPEKRGEIR+M+EVAAADI QLGGSVE
Sbjct: 1 MSALTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRRMLEVAAADIKQLGGSVE 60
Query: 428 LVDIGNQK 451
LVDIG QK
Sbjct: 61 LVDIGKQK 68
>ref|XP_533371.2| PREDICTED: similar to carnosinase 1 [Canis familiaris].
Length = 646
Score = 503 bits (1296), Expect = e-142
Identities = 248/484 (51%), Positives = 330/484 (68%), Gaps = 2/484 (0%)
Frame = +2
Query: 221 SPRSASGGKMPALAALFKYIDENQDRYIKKLAEWVAIQS--VSAWPEKRGEIRKMMEVAA 394
SP S G L +F+YID +QD +++ L EWVA++S V P R E+ +MM +AA
Sbjct: 165 SPSSPPAG---LLEKVFQYIDLHQDEFVQTLKEWVAVESDSVQPLPHLRQELFRMMALAA 221
Query: 395 ADITQLGGSVELVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALED 574
+ LG SV+ VD G Q+LPDG +LG+DP+K TVC YGHLDVQPA ED
Sbjct: 222 EQLRCLGASVDSVDSGFQQLPDGQTLPIPPIILAELGNDPKKPTVCFYGHLDVQPARRED 281
Query: 575 GWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXX 754
GW ++P+TL E DGKLYGRGATD+KGPV W+NA+ F+ +++PVNI+F +
Sbjct: 282 GWLTDPYTLTEVDGKLYGRGATDNKGPVLAWINAVSTFRALEEDLPVNIKFIIEGMEEAG 341
Query: 755 XXXLDALIFAQKDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHS 934
L+ L+ +KD+FF VD++ ISDN WL + KP +TYG RG YF +EV+C ++D HS
Sbjct: 342 SVALEELVRKEKDRFFSSVDYIVISDNLWLTQRKPALTYGTRGNSYFRVEVKCRDQDFHS 401
Query: 935 GVYGGSVHEAMTDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSK 1114
G +GG +HE M DL+ L+GSL+D G ILIPGI + VAPLTEEE LY ID DL EY
Sbjct: 402 GTFGGILHEPMADLVALLGSLVDSSGHILIPGIYDQVAPLTEEERKLYKAIDLDLEEYRN 461
Query: 1115 DVGAETLLHDCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMT 1294
E L D K++ILMH WRYPSLS+HGIEGAF GAKTVIP +VIGKFSIRLVP M
Sbjct: 462 SSRVERFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGAKTVIPGQVIGKFSIRLVPHMN 521
Query: 1295 PEVVSEQVISYLTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEP 1474
VV +QV +L F++ +S N+ V M G +PW+++ Y+A +RA++TVFG EP
Sbjct: 522 TSVVEKQVKQHLEHVFSKRNSSNQMAVSMMLGLQPWIANIKDNQYLAAKRAIKTVFGTEP 581
Query: 1475 DLTREGGSIPVTLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYE 1654
D+ R+G +IP+ FQ++ K+VM+LP+G+ DDG HSQ EK+NR NYIEG+K+ AA+ E
Sbjct: 582 DMIRDGSTIPIAKIFQDSIQKSVMMLPLGAVDDGEHSQKEKINRWNYIEGSKLFAAFFLE 641
Query: 1655 VSQL 1666
+++L
Sbjct: 642 MAKL 645
>ref|XP_856216.1| PREDICTED: similar to Cytosolic nonspecific dipeptidase (Glutamate
carboxypeptidase-like protein 1) (CNDP dipeptidase 2)
isoform 5 [Canis familiaris].
Length = 343
Score = 469 bits (1208), Expect = e-132
Identities = 223/268 (83%), Positives = 241/268 (89%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKY+DENQDRYIKKLAEWVAIQSVSAWPEKRGEIR+M+EVAAADI QLGGSVE
Sbjct: 1 MSALTTLFKYVDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRRMLEVAAADIKQLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE GKLGSDPQKKTVC+YGHLDVQPAAL+DGWDSEPFTLVE
Sbjct: 61 LVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALDDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKLYGRGATDDKGPVAGW+NALEAFQKTNQE+PVN+RFCL LD LIF++
Sbjct: 121 RDGKLYGRGATDDKGPVAGWLNALEAFQKTNQEIPVNVRFCLEGMEESGSEGLDELIFSR 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD FFKDVD++CISDNYWLGK KPC+TYGLRGICYFFIEVECS++DLHSGVYGGSVHEAM
Sbjct: 181 KDTFFKDVDYICISDNYWLGKKKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAP 1051
TDLI LMGSL+D+KGKILIPGI+EAVAP
Sbjct: 241 TDLIMLMGSLVDKKGKILIPGISEAVAP 268
Score = 139 bits (349), Expect = 1e-32
Identities = 68/75 (90%), Positives = 73/75 (97%)
Frame = +2
Query: 1442 RALQTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIE 1621
R+++ VFGVEPDLTREGGSIPVTLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR NYIE
Sbjct: 269 RSVKGVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIE 328
Query: 1622 GTKMMAAYLYEVSQL 1666
GTKM+AAYLYEVSQL
Sbjct: 329 GTKMLAAYLYEVSQL 343
>ref|XP_848996.1| PREDICTED: similar to C10C5.4 [Canis familiaris].
Length = 496
Score = 50.1 bits (118), Expect = 8e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Frame = +2
Query: 503 GSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALE 682
GSDP + + H DV PA ++GW+ PF+ +E DG ++GRG D+K + + ALE
Sbjct: 105 GSDPSLQPYMLMAHSDVVPAP-DEGWEVPPFSGLEHDGFIHGRGTLDNKNSLMAILQALE 163
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 95,124,580
Number of extensions: 2865027
Number of successful extensions: 10425
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 10399
Number of HSP's successfully gapped: 9
Length of query: 697
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 587
Effective length of database: 15,207,544
Effective search space: 8926828328
Effective search space used: 8926828328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007393
(2093 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060705.2| cytosolic non-specific dipeptidase isoform 1 [H... 838 0.0
Alignment gi|NP_001161971.1| cytosolic non-specific dipeptidase isoform 2... 570 e-162
Alignment gi|NP_116038.4| beta-Ala-His dipeptidase precursor [Homo sapien... 501 e-141
Alignment gi|NP_689704.4| probable carboxypeptidase PM20D1 precursor [Hom... 59 1e-08
>ref|NP_060705.2| cytosolic non-specific dipeptidase isoform 1 [Homo sapiens].
Length = 475
Score = 838 bits (2164), Expect = 0.0
Identities = 402/475 (84%), Positives = 435/475 (91%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKYIDENQDRYIKKLA+WVAIQSVSAWPEKRGEIR+MMEVAAAD+ QLGGSVE
Sbjct: 1 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE G+LGSDPQKKTVC+YGHLDVQPAALEDGWDSEPFTLVE
Sbjct: 61 LVDIGKQKLPDGSEIPLPPILLGRLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKLYGRG+TDDKGPVAGW+NALEA+QKT QE+PVN+RFCL LD LIFA+
Sbjct: 121 RDGKLYGRGSTDDKGPVAGWINALEAYQKTGQEIPVNVRFCLEGMEESGSEGLDELIFAR 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD FFKDVD+VCISDNYWLGK KPC+TYGLRGICYFFIEVECSN+DLHSGVYGGSVHEAM
Sbjct: 181 KDTFFKDVDYVCISDNYWLGKKKPCITYGLRGICYFFIEVECSNKDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLI LMGSL+D++G ILIPGINEAVA +TEEE LYD IDFD+ E++KDVGA+ LLH
Sbjct: 241 TDLILLMGSLVDKRGNILIPGINEAVAAVTEEEHKLYDDIDFDIEEFAKDVGAQILLHSH 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV+GKFSIRLVP+MTPEVV EQV SY
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPNMTPEVVGEQVTSY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
LTKKFAEL SPN+FKVYMGHGGKPWVSDF+HPHY+AGRRA++TVFGVEPDLTREGGSIPV
Sbjct: 361 LTKKFAELRSPNEFKVYMGHGGKPWVSDFSHPHYLAGRRAMKTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQLKN 1672
TLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR+NYIEGTKM+AAYLYEVSQLK+
Sbjct: 421 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRYNYIEGTKMLAAYLYEVSQLKD 475
>ref|NP_001161971.1| cytosolic non-specific dipeptidase isoform 2 [Homo sapiens].
Length = 391
Score = 570 bits (1470), Expect = e-162
Identities = 272/324 (83%), Positives = 298/324 (91%)
Frame = +2
Query: 701 QEVPVNIRFCLXXXXXXXXXXLDALIFAQKDQFFKDVDFVCISDNYWLGKNKPCVTYGLR 880
+E+PVN+RFCL LD LIFA+KD FFKDVD+VCISDNYWLGK KPC+TYGLR
Sbjct: 68 KEIPVNVRFCLEGMEESGSEGLDELIFARKDTFFKDVDYVCISDNYWLGKKKPCITYGLR 127
Query: 881 GICYFFIEVECSNRDLHSGVYGGSVHEAMTDLITLMGSLMDRKGKILIPGINEAVAPLTE 1060
GICYFFIEVECSN+DLHSGVYGGSVHEAMTDLI LMGSL+D++G ILIPGINEAVA +TE
Sbjct: 128 GICYFFIEVECSNKDLHSGVYGGSVHEAMTDLILLMGSLVDKRGNILIPGINEAVAAVTE 187
Query: 1061 EELALYDQIDFDLAEYSKDVGAETLLHDCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTV 1240
EE LYD IDFD+ E++KDVGA+ LLH KKDILMHRWRYPSLSLHGIEGAFSGSGAKTV
Sbjct: 188 EEHKLYDDIDFDIEEFAKDVGAQILLHSHKKDILMHRWRYPSLSLHGIEGAFSGSGAKTV 247
Query: 1241 IPRKVIGKFSIRLVPDMTPEVVSEQVISYLTKKFAELHSPNKFKVYMGHGGKPWVSDFNH 1420
IPRKV+GKFSIRLVP+MTPEVV EQV SYLTKKFAEL SPN+FKVYMGHGGKPWVSDF+H
Sbjct: 248 IPRKVVGKFSIRLVPNMTPEVVGEQVTSYLTKKFAELRSPNEFKVYMGHGGKPWVSDFSH 307
Query: 1421 PHYMAGRRALQTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPMGSADDGAHSQNEKL 1600
PHY+AGRRA++TVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLP+GSADDGAHSQNEKL
Sbjct: 308 PHYLAGRRAMKTVFGVEPDLTREGGSIPVTLTFQEATGKNVMLLPVGSADDGAHSQNEKL 367
Query: 1601 NRHNYIEGTKMMAAYLYEVSQLKN 1672
NR+NYIEGTKM+AAYLYEVSQLK+
Sbjct: 368 NRYNYIEGTKMLAAYLYEVSQLKD 391
Score = 122 bits (307), Expect = 1e-27
Identities = 60/68 (88%), Positives = 63/68 (92%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL LFKYIDENQDRYIKKLA+WVAIQSVSAWPEKRGEIR+MMEVAAAD+ QLGGSVE
Sbjct: 1 MAALTTLFKYIDENQDRYIKKLAKWVAIQSVSAWPEKRGEIRRMMEVAAADVKQLGGSVE 60
Query: 428 LVDIGNQK 451
LVDIG QK
Sbjct: 61 LVDIGKQK 68
>ref|NP_116038.4| beta-Ala-His dipeptidase precursor [Homo sapiens].
Length = 507
Score = 501 bits (1289), Expect = e-141
Identities = 248/487 (50%), Positives = 326/487 (66%), Gaps = 3/487 (0%)
Frame = +2
Query: 215 LESPRSASGGKMPALAA-LFKYIDENQDRYIKKLAEWVAIQS--VSAWPEKRGEIRKMME 385
LE +S PAL +F+YID +QD +++ L EWVAI+S V P R E+ +MM
Sbjct: 20 LERGMFSSPSPPPALLEKVFQYIDLHQDEFVQTLKEWVAIESDSVQPVPRFRQELFRMMA 79
Query: 386 VAAADITQLGGSVELVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAA 565
VAA + +LG V VD+G Q+LPDG +LGSDP K TVC YGHLDVQPA
Sbjct: 80 VAADTLQRLGARVASVDMGPQQLPDGQSLPIPPVILAELGSDPTKGTVCFYGHLDVQPAD 139
Query: 566 LEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXX 745
DGW ++P+ L E DGKLYGRGATD+KGPV W+NA+ AF+ Q++PVNI+F +
Sbjct: 140 RGDGWLTDPYVLTEVDGKLYGRGATDNKGPVLAWINAVSAFRALEQDLPVNIKFIIEGME 199
Query: 746 XXXXXXLDALIFAQKDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRD 925
L+ L+ +KD+FF VD++ ISDN W+ + KP +TYG RG YF +EV+C ++D
Sbjct: 200 EAGSVALEELVEKEKDRFFSGVDYIVISDNLWISQRKPAITYGTRGNSYFMVEVKCRDQD 259
Query: 926 LHSGVYGGSVHEAMTDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAE 1105
HSG +GG +HE M DL+ L+GSL+D G IL+PGI + V PLTEEE+ Y I DL E
Sbjct: 260 FHSGTFGGILHEPMADLVALLGSLVDSSGHILVPGIYDEVVPLTEEEINTYKAIHLDLEE 319
Query: 1106 YSKDVGAETLLHDCKKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVP 1285
Y E L D K++ILMH WRYPSLS+HGIEGAF G KTVIP +VIGKFSIRLVP
Sbjct: 320 YRNSSRVEKFLFDTKEEILMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVIGKFSIRLVP 379
Query: 1286 DMTPEVVSEQVISYLTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFG 1465
M V +QV +L F++ +S NK V M G PW+++ + Y+A +RA++TVFG
Sbjct: 380 HMNVSAVEKQVTRHLEDVFSKRNSSNKMVVSMTLGLHPWIANIDDTQYLAAKRAIRTVFG 439
Query: 1466 VEPDLTREGGSIPVTLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAY 1645
EPD+ R+G +IP+ FQE K+V+L+P+G+ DDG HSQNEK+NR NYIEGTK+ AA+
Sbjct: 440 TEPDMIRDGSTIPIAKMFQEIVHKSVVLIPLGAVDDGEHSQNEKINRWNYIEGTKLFAAF 499
Query: 1646 LYEVSQL 1666
E++QL
Sbjct: 500 FLEMAQL 506
>ref|NP_689704.4| probable carboxypeptidase PM20D1 precursor [Homo sapiens].
Length = 502
Score = 59.3 bits (142), Expect = 1e-08
Identities = 29/60 (48%), Positives = 37/60 (61%)
Frame = +2
Query: 503 GSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALE 682
GSDP + + H DV PA E+GW+ PF+ +ERDG +YGRG DDK V + ALE
Sbjct: 112 GSDPSLQPYLLMAHFDVVPAP-EEGWEVPPFSGLERDGIIYGRGTLDDKNSVMALLQALE 170
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 93,251,974
Number of extensions: 2805169
Number of successful extensions: 10070
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10034
Number of HSP's successfully gapped: 5
Length of query: 697
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 587
Effective length of database: 14,671,124
Effective search space: 8611949788
Effective search space used: 8611949788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007393
(2093 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075638.2| cytosolic non-specific dipeptidase [Mus musculu... 852 0.0
Alignment gi|NP_803233.2| beta-Ala-His dipeptidase [Mus musculus]. 501 e-142
Alignment gi|NP_835180.2| probable carboxypeptidase PM20D1 precursor [Mus... 58 3e-08
>ref|NP_075638.2| cytosolic non-specific dipeptidase [Mus musculus].
Length = 475
Score = 852 bits (2202), Expect = 0.0
Identities = 409/475 (86%), Positives = 441/475 (92%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
M AL A+F+YIDENQDRY+KKLAEWVAIQSVSAWPEKRGEIR+MMEVAAAD+ +LGGSVE
Sbjct: 1 MSALKAVFQYIDENQDRYVKKLAEWVAIQSVSAWPEKRGEIRRMMEVAAADVQRLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIG QKLPDGSE GKLGSDPQKKTVC+YGHLDVQPAALEDGWDSEPFTLVE
Sbjct: 61 LVDIGKQKLPDGSEIPLPPILLGKLGSDPQKKTVCIYGHLDVQPAALEDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
R+GKLYGRG+TDDKGPVAGW+NALEA+QKT QE+PVN+RFCL LD LIFAQ
Sbjct: 121 REGKLYGRGSTDDKGPVAGWMNALEAYQKTGQEIPVNLRFCLEGMEESGSEGLDELIFAQ 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KD+FFKDVD+VCISDNYWLGKNKPC+TYGLRGICYFFIEVECS++DLHSGVYGGSVHEAM
Sbjct: 181 KDKFFKDVDYVCISDNYWLGKNKPCITYGLRGICYFFIEVECSDKDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLI+LMG L+D+KGKILIPGIN+AVAP+T+EE ALYD IDFD+ E++KDVGAETLLH C
Sbjct: 241 TDLISLMGCLVDKKGKILIPGINDAVAPVTDEEHALYDHIDFDMEEFAKDVGAETLLHSC 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKV+GKFSIRLVPDM PEVVSEQV SY
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVVGKFSIRLVPDMIPEVVSEQVSSY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
L+KKFAEL SPNKFKVYMGHGGKPWVSDFNHPHY AGRRAL+TVFGVEPDLTREGGSIPV
Sbjct: 361 LSKKFAELQSPNKFKVYMGHGGKPWVSDFNHPHYQAGRRALKTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQLKN 1672
TLTFQEATGKNVMLLP+GSADDGAHSQNEKLNR NYIEGTKM+AAYLYEVSQLKN
Sbjct: 421 TLTFQEATGKNVMLLPVGSADDGAHSQNEKLNRLNYIEGTKMLAAYLYEVSQLKN 475
>ref|NP_803233.2| beta-Ala-His dipeptidase [Mus musculus].
Length = 492
Score = 501 bits (1291), Expect = e-142
Identities = 240/471 (50%), Positives = 322/471 (68%), Gaps = 2/471 (0%)
Frame = +2
Query: 257 LAALFKYIDENQDRYIKKLAEWVAIQS--VSAWPEKRGEIRKMMEVAAADITQLGGSVEL 430
L LF YID +QD +++ L EWVAI+S V P R ++ +MM +AA + LG VE
Sbjct: 10 LEKLFHYIDLHQDEFVQTLKEWVAIESDSVQPVPRLRQKLFQMMALAADKLRNLGAGVES 69
Query: 431 VDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVER 610
+D+G+Q++PDG +LGSDP+K TVC YGHLDVQPA +DGW ++P+TL E
Sbjct: 70 IDLGSQQMPDGQSLPIPPILLAELGSDPEKPTVCFYGHLDVQPAQKDDGWLTDPYTLTEV 129
Query: 611 DGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQK 790
DGKLYGRGATD+KGPV W+NA+ F+ Q++PVNI+ L L+ L+ +K
Sbjct: 130 DGKLYGRGATDNKGPVLAWINAVSTFRALQQDLPVNIKLILEGMEEAGSIALEELVMREK 189
Query: 791 DQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAMT 970
D FF VD++ ISDN WL + KP +TYG RG CYF +EV+C ++D HSG +GG ++E M
Sbjct: 190 DHFFSSVDYIVISDNLWLSQRKPALTYGTRGNCYFTVEVKCRDQDFHSGTFGGILNEPMA 249
Query: 971 DLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDCK 1150
DL+ L+GSL+D G ILIPGI + +AP+TE E +Y ID DL EY E L D K
Sbjct: 250 DLVALLGSLVDSSGHILIPGIYDQMAPITEGEKTMYKNIDMDLEEYQNINQVEKFLFDTK 309
Query: 1151 KDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISYL 1330
+++LMH WRYPSLS+HGIEGAF G KTVIP +V+GKFSIRLVP M+P VV +QV +L
Sbjct: 310 EELLMHLWRYPSLSIHGIEGAFDEPGTKTVIPGRVLGKFSIRLVPTMSPSVVEKQVTQHL 369
Query: 1331 TKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPVT 1510
F++ +S NK V M G PW ++ N Y+A +R ++TVFGV PD+ R+G +IP+
Sbjct: 370 EAVFSKRNSFNKMAVSMVLGLHPWTANVNDTQYLAAQRTIKTVFGVNPDMIRDGSTIPIA 429
Query: 1511 LTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQ 1663
FQ T K+VM+LP+G+ DDG HSQNEK+NR NYI+G+K+ AA+ E+S+
Sbjct: 430 KIFQAITQKSVMMLPLGAVDDGEHSQNEKINRWNYIQGSKLFAAFFLELSK 480
>ref|NP_835180.2| probable carboxypeptidase PM20D1 precursor [Mus musculus].
Length = 503
Score = 57.8 bits (138), Expect = 3e-08
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +2
Query: 503 GSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALE 682
GSDP + + H+DV PA E+GW+ PF+ +ER+G +YGRGA D+K V ++ALE
Sbjct: 112 GSDPSLQPYMLMAHIDVVPAP-EEGWEVPPFSGLERNGFIYGRGALDNKNSVMAILHALE 170
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 78,751,616
Number of extensions: 2340946
Number of successful extensions: 8580
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8563
Number of HSP's successfully gapped: 3
Length of query: 697
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 589
Effective length of database: 12,373,671
Effective search space: 7288092219
Effective search space used: 7288092219
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007393
(2093 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230636.1| cytosolic non-specific dipeptidase [Sus scro... 927 0.0
Alignment gi|XP_003121733.2| PREDICTED: beta-Ala-His dipeptidase-like [Su... 490 e-138
Alignment gi|XP_003361460.1| PREDICTED: cytosolic non-specific dipeptidas... 136 4e-32
Alignment gi|XP_003123304.2| PREDICTED: probable carboxypeptidase PM20D1-... 58 2e-08
Alignment gi|NP_001230394.1| peptidase M20 domain containing 1 [Sus scrof... 57 3e-08
>ref|NP_001230636.1| cytosolic non-specific dipeptidase [Sus scrofa].
Length = 475
Score = 927 bits (2396), Expect = 0.0
Identities = 457/475 (96%), Positives = 457/475 (96%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE
Sbjct: 1 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 60
Query: 428 LVDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 607
LVDIGNQKLPDGSE GKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE
Sbjct: 61 LVDIGNQKLPDGSEIPLPPILLGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVE 120
Query: 608 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQ 787
RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCL LDALIFAQ
Sbjct: 121 RDGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLEGMEESGSEGLDALIFAQ 180
Query: 788 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 967
KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM
Sbjct: 181 KDQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAM 240
Query: 968 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 1147
TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC
Sbjct: 241 TDLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDC 300
Query: 1148 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 1327
KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY
Sbjct: 301 KKDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISY 360
Query: 1328 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 1507
LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV
Sbjct: 361 LTKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPV 420
Query: 1508 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQLKN 1672
TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQLKN
Sbjct: 421 TLTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQLKN 475
>ref|XP_003121733.2| PREDICTED: beta-Ala-His dipeptidase-like [Sus scrofa].
Length = 592
Score = 490 bits (1262), Expect = e-138
Identities = 233/472 (49%), Positives = 324/472 (68%), Gaps = 2/472 (0%)
Frame = +2
Query: 257 LAALFKYIDENQDRYIKKLAEWVAIQS--VSAWPEKRGEIRKMMEVAAADITQLGGSVEL 430
L +F+YID +QD +++ L EWVA++S V P R E+ +MM +A + LG V
Sbjct: 120 LGKIFQYIDVHQDEFVQTLKEWVAVESDSVQPVPRLRQELLRMMVLAEERLRSLGAHVNA 179
Query: 431 VDIGNQKLPDGSEXXXXXXXXGKLGSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVER 610
V++G+QKLPDG +LG++P+K TVC YGHLDVQPA DGW ++P+TL E
Sbjct: 180 VNMGSQKLPDGQTLPIPPIILAELGNNPEKPTVCFYGHLDVQPARQADGWRTDPYTLTEV 239
Query: 611 DGKLYGRGATDDKGPVAGWVNALEAFQKTNQEVPVNIRFCLXXXXXXXXXXLDALIFAQK 790
DGKLYGRG TD+KGPV W+NA+ F+ ++++PVNI+F + L+ L+ +K
Sbjct: 240 DGKLYGRGTTDNKGPVLAWINAVSTFRALDEDLPVNIKFVIEGMEEAGSLALEELVKKEK 299
Query: 791 DQFFKDVDFVCISDNYWLGKNKPCVTYGLRGICYFFIEVECSNRDLHSGVYGGSVHEAMT 970
FF +VD++ ISDN W+ ++KP +TYG RG YF +EV+C ++D HSG +GG ++E M
Sbjct: 300 AGFFSNVDYIVISDNLWISQSKPALTYGTRGNSYFMVEVKCRDQDFHSGTFGGILNEPMA 359
Query: 971 DLITLMGSLMDRKGKILIPGINEAVAPLTEEELALYDQIDFDLAEYSKDVGAETLLHDCK 1150
DL+ L+GSL+D G+ILIPGI + VAPLTEEE +Y+ ID DL EY + L D K
Sbjct: 360 DLVALLGSLVDSSGRILIPGIYDHVAPLTEEERKMYEAIDLDLEEYRHSSQMQKFLFDTK 419
Query: 1151 KDILMHRWRYPSLSLHGIEGAFSGSGAKTVIPRKVIGKFSIRLVPDMTPEVVSEQVISYL 1330
+++LMH WR+PSLS+HGIEGAF GAKTVIP +VIGKFSIRLVP M VV +QV +L
Sbjct: 420 EELLMHLWRFPSLSIHGIEGAFDEPGAKTVIPGRVIGKFSIRLVPHMNMSVVEKQVKRHL 479
Query: 1331 TKKFAELHSPNKFKVYMGHGGKPWVSDFNHPHYMAGRRALQTVFGVEPDLTREGGSIPVT 1510
F++ +S N+ + M G PW+++ Y+A +RA++TVFG EPD+ R+G +IP+
Sbjct: 480 ESTFSKRNSSNQMTISMTLGLHPWIANIRDNQYLAAKRAIKTVFGTEPDMIRDGSTIPIA 539
Query: 1511 LTFQEATGKNVMLLPMGSADDGAHSQNEKLNRHNYIEGTKMMAAYLYEVSQL 1666
FQ K+VM+LP+G+ DDG HSQNEK+NR NYIEG+K+ AA+ EV++L
Sbjct: 540 QIFQATIQKSVMMLPLGAVDDGEHSQNEKINRWNYIEGSKVFAAFFLEVAKL 591
>ref|XP_003361460.1| PREDICTED: cytosolic non-specific dipeptidase-like, partial [Sus
scrofa].
Length = 68
Score = 136 bits (343), Expect = 4e-32
Identities = 68/68 (100%), Positives = 68/68 (100%)
Frame = +2
Query: 248 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 427
MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE
Sbjct: 1 MPALAALFKYIDENQDRYIKKLAEWVAIQSVSAWPEKRGEIRKMMEVAAADITQLGGSVE 60
Query: 428 LVDIGNQK 451
LVDIGNQK
Sbjct: 61 LVDIGNQK 68
>ref|XP_003123304.2| PREDICTED: probable carboxypeptidase PM20D1-like [Sus scrofa].
Length = 382
Score = 58.2 bits (139), Expect = 2e-08
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +2
Query: 503 GSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALE 682
GSDP + + H+DV PA ++GWD PF+ +ERDG +YGRG D+K + G + +LE
Sbjct: 112 GSDPSLQPYMLLAHIDVVPAP-DEGWDVPPFSGLERDGFIYGRGTIDNKNSLMGILQSLE 170
>ref|NP_001230394.1| peptidase M20 domain containing 1 [Sus scrofa].
Length = 503
Score = 57.4 bits (137), Expect = 3e-08
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +2
Query: 503 GSDPQKKTVCVYGHLDVQPAALEDGWDSEPFTLVERDGKLYGRGATDDKGPVAGWVNALE 682
GSDP + + H+DV PA ++GWD PF+ +ER+G +YGRG D+K + G + ALE
Sbjct: 112 GSDPSLQPYMLLAHIDVVPAP-DEGWDVPPFSGLERNGFIYGRGTIDNKNSLMGILQALE 170
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 58,852,916
Number of extensions: 1791160
Number of successful extensions: 6717
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6697
Number of HSP's successfully gapped: 5
Length of query: 697
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 591
Effective length of database: 8,704,850
Effective search space: 5144566350
Effective search space used: 5144566350
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007393
(2093 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 967 0.0
gb|JH118760.1| Sus scrofa unplaced genomic scaffold ChrUScaf2276 531 e-148
>Sscrofa_Chr01
|| Length = 315321322
Score = 967 bits (488), Expect = 0.0
Identities = 490/491 (99%)
Strand = Plus / Plus
Query: 1603 caggcacaactacattgaaggaaccaagatgatggctgcatacctgtacgaagtgtctca 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165547875 caggcacaactacattgaaggaaccaagatgatggctgcatacctgtacgaagtgtctca 165547934
Query: 1663 gctgaagaactgagccccacctctgccctccacctcacactcttctggctgttcaggaaa 1722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165547935 gctgaagaactgagccccacctctgccctccacctcacactcttctggctgttcaggaaa 165547994
Query: 1723 gcggaagcccgtctctcctctttgcgtctcatcagatgccacagactgcagaagtggacg 1782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165547995 gcggaagcccgtctctcctctttgcgtctcatcagatgccacagactgcagaagtggacg 165548054
Query: 1783 tgagggcacctacctggctcaggatggagttacctatatggggccgtggtccatgttcag 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165548055 tgagggcacctacctggctcaggatggagttacctatatggggccgtggtccatgttcag 165548114
Query: 1843 tcctgggggcttgtaaatgaccctgggtggtggctgaatgctcactggtggtcagtgtga 1902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165548115 tcctgggggcttgtaaatgaccctgggtggtggctgaatgctcactggtggtcagtgtga 165548174
Query: 1903 cttggtctccagaaaagagctgaggcccgaaagcacaggttcttctgtagaaggttctgc 1962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165548175 cttggtctccagaaaagagctgaggcccgaaagcacaggttcttctgtagaaggttctgc 165548234
Query: 1963 ctgacgtccatttgggctaaagagcagacttggtgcttcccaggcccagctctgcccccg 2022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165548235 ctgacgtccatttgggctaaagagcagacttggtgcttcccaggcccagctctgcccccg 165548294
Query: 2023 agtcagggtcgtgcatgctggacacttangggctcccgattccttgagggccaccctctc 2082
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 165548295 agtcagggtcgtgcatgctggacacttaggggctcccgattccttgagggccaccctctc 165548354
Query: 2083 tgatccctgct 2093
|||||||||||
Sbjct: 165548355 tgatccctgct 165548365
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Plus
Query: 40 gagatcagcctgagcctatgactgcttcctagagcccttgtctctgccgaggtcacttcc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165532149 gagatcagcctgagcctatgactgcttcctagagcccttgtctctgccgaggtcacttcc 165532208
Query: 100 tggaatcctcgtgactgcttcaaagtgctggcggtgggtggagtccagtttctgatcctg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165532209 tggaatcctcgtgactgcttcaaagtgctggcggtgggtggagtccagtttctgatcctg 165532268
Query: 160 aacaagtgcctcccagtcctttctcgagactgcacggacaggttgttcttccttcctaga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165532269 aacaagtgcctcccagtcctttctcgagactgcacggacaggttgttcttccttcctaga 165532328
Query: 220 atctccaaggtctgcgtcggggggaaagatgccagccctcgctgctctgtttaagtacat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165532329 atctccaaggtctgcgtcggggggaaagatgccagccctcgctgctctgtttaagtacat 165532388
Query: 280 tgatgagaatcaggatcgctacattaag 307
||||||||||||||||||||||||||||
Sbjct: 165532389 tgatgagaatcaggatcgctacattaag 165532416
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Plus
Query: 701 caggaggttcccgtcaacatccgcttctgtctggaaggcatggaggagtctggctctgaa 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165542328 caggaggttcccgtcaacatccgcttctgtctggaaggcatggaggagtctggctctgaa 165542387
Query: 761 ggcctggacgcactcatctttgcccagaaggaccagttctttaaggatgtggacttcgtc 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165542388 ggcctggacgcactcatctttgcccagaaggaccagttctttaaggatgtggacttcgtc 165542447
Query: 821 tgcatctccgacaattactggctggggaagaacaagccctgcgtcacctatgggctccgc 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165542448 tgcatctccgacaattactggctggggaagaacaagccctgcgtcacctatgggctccgc 165542507
Query: 881 ggcatctgctattttttcatcgaggt 906
||||||||||||||||||||||||||
Sbjct: 165542508 ggcatctgctattttttcatcgaggt 165542533
Score = 333 bits (168), Expect = 2e-88
Identities = 168/168 (100%)
Strand = Plus / Plus
Query: 1149 agaaagacatcctgatgcacaggtggcgatacccgtccctctcgctgcatgggatcgaag 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165545342 agaaagacatcctgatgcacaggtggcgatacccgtccctctcgctgcatgggatcgaag 165545401
Query: 1209 gtgccttctctgggtcgggggccaagaccgtgattcctcgaaaagtgatcggcaagttct 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165545402 gtgccttctctgggtcgggggccaagaccgtgattcctcgaaaagtgatcggcaagttct 165545461
Query: 1269 ccatcaggctcgtgccagacatgactcctgaagtggtcagcgagcagg 1316
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165545462 ccatcaggctcgtgccagacatgactcctgaagtggtcagcgagcagg 165545509
Score = 329 bits (166), Expect = 4e-87
Identities = 166/166 (100%)
Strand = Plus / Plus
Query: 450 agctccctgatggctcggagataccgcttcctcccattttacttggcaagctgggctctg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165539094 agctccctgatggctcggagataccgcttcctcccattttacttggcaagctgggctctg 165539153
Query: 510 acccgcagaagaagacggtgtgcgtttatgggcatctggatgtgcagccggcagccctgg 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165539154 acccgcagaagaagacggtgtgcgtttatgggcatctggatgtgcagccggcagccctgg 165539213
Query: 570 aggatggctgggatagtgagcccttcaccttggtggagcgagacgg 615
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165539214 aggatggctgggatagtgagcccttcaccttggtggagcgagacgg 165539259
Score = 321 bits (162), Expect = 9e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 989 ggctccctgatggacaggaaggggaagatcctcatccccggcatcaacgaggccgtggcc 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165544234 ggctccctgatggacaggaaggggaagatcctcatccccggcatcaacgaggccgtggcc 165544293
Query: 1049 cccttgacggaggaggagctagcgctctatgaccagattgacttcgacctggcagagtac 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165544294 cccttgacggaggaggagctagcgctctatgaccagattgacttcgacctggcagagtac 165544353
Query: 1109 tccaaggacgtgggggcagagaccctgctgcatgactgcaag 1150
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165544354 tccaaggacgtgggggcagagaccctgctgcatgactgcaag 165544395
Score = 301 bits (152), Expect = 8e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 1455 cagtttttggcgtcgagccggacctgaccagggaaggtggcagcattcctgtgactctga 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165547341 cagtttttggcgtcgagccggacctgaccagggaaggtggcagcattcctgtgactctga 165547400
Query: 1515 cgtttcaggaggccacgggcaagaatgtcatgctgttgcccatgggctcagctgatgacg 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165547401 cgtttcaggaggccacgggcaagaatgtcatgctgttgcccatgggctcagctgatgacg 165547460
Query: 1575 gagcccactcccagaatgagaagctcaacagg 1606
||||||||||||||||||||||||||||||||
Sbjct: 165547461 gagcccactcccagaatgagaagctcaacagg 165547492
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 306 agaaacttgcagaatgggtggccatccagagcgtgtctgcctggcctgagaagaggggtg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165534003 agaaacttgcagaatgggtggccatccagagcgtgtctgcctggcctgagaagaggggtg 165534062
Query: 366 agatccggaagatgatggaggttgccgctgccgacatcacacagctggggggctccgtgg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165534063 agatccggaagatgatggaggttgccgctgccgacatcacacagctggggggctccgtgg 165534122
Query: 426 agctggtggacatcgggaaccagaag 451
||||||||||||||||||||||||||
Sbjct: 165534123 agctggtggacatcgggaaccagaag 165534148
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Plus
Query: 1313 caggtgataagctacttgaccaagaagtttgctgaactgcacagccccaacaagttcaag 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165546984 caggtgataagctacttgaccaagaagtttgctgaactgcacagccccaacaagttcaag 165547043
Query: 1373 gtgtacatgggccacggggggaagccctgggtgtctgacttcaaccaccctcattacatg 1432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165547044 gtgtacatgggccacggggggaagccctgggtgtctgacttcaaccaccctcattacatg 165547103
Query: 1433 gctgggagaagagccctacagacag 1457
|||||||||||||||||||||||||
Sbjct: 165547104 gctgggagaagagccctacagacag 165547128
Score = 180 bits (91), Expect = 2e-42
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 614 ggcaaactgtacggaagaggagcaacggatgacaaagggcccgtggccggctgggtgaat 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165541300 ggcaaactgtacggaagaggagcaacggatgacaaagggcccgtggccggctgggtgaat 165541359
Query: 674 gccctggaggccttccagaaaacaaatcagg 704
|||||||||||||||||||||||||||||||
Sbjct: 165541360 gccctggaggccttccagaaaacaaatcagg 165541390
Score = 174 bits (88), Expect = 1e-40
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 903 aggtggaatgcagcaacagagacctgcactccggcgtgtatggtggctctgtgcatgagg 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165543319 aggtggaatgcagcaacagagacctgcactccggcgtgtatggtggctctgtgcatgagg 165543378
Query: 963 ccatgaccgatctcatcacgctgatggg 990
||||||||||||||||||||||||||||
Sbjct: 165543379 ccatgaccgatctcatcacgctgatggg 165543406
Score = 79.8 bits (40), Expect = 6e-12
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 1 gagacacgtggtgcggaacccgagctgtagcagctggctg 40
||||||||||||||||||||||||||||||||||||||||
Sbjct: 165529518 gagacacgtggtgcggaacccgagctgtagcagctggctg 165529557
>gb|JH118760.1| Sus scrofa unplaced genomic scaffold ChrUScaf2276
Length = 82226
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Plus
Query: 40 gagatcagcctgagcctatgactgcttcctagagcccttgtctctgccgaggtcacttcc 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76563 gagatcagcctgagcctatgactgcttcctagagcccttgtctctgccgaggtcacttcc 76622
Query: 100 tggaatcctcgtgactgcttcaaagtgctggcggtgggtggagtccagtttctgatcctg 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76623 tggaatcctcgtgactgcttcaaagtgctggcggtgggtggagtccagtttctgatcctg 76682
Query: 160 aacaagtgcctcccagtcctttctcgagactgcacggacaggttgttcttccttcctaga 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76683 aacaagtgcctcccagtcctttctcgagactgcacggacaggttgttcttccttcctaga 76742
Query: 220 atctccaaggtctgcgtcggggggaaagatgccagccctcgctgctctgtttaagtacat 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76743 atctccaaggtctgcgtcggggggaaagatgccagccctcgctgctctgtttaagtacat 76802
Query: 280 tgatgagaatcaggatcgctacattaag 307
||||||||||||||||||||||||||||
Sbjct: 76803 tgatgagaatcaggatcgctacattaag 76830
Score = 289 bits (146), Expect = 3e-75
Identities = 146/146 (100%)
Strand = Plus / Plus
Query: 306 agaaacttgcagaatgggtggccatccagagcgtgtctgcctggcctgagaagaggggtg 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78415 agaaacttgcagaatgggtggccatccagagcgtgtctgcctggcctgagaagaggggtg 78474
Query: 366 agatccggaagatgatggaggttgccgctgccgacatcacacagctggggggctccgtgg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78475 agatccggaagatgatggaggttgccgctgccgacatcacacagctggggggctccgtgg 78534
Query: 426 agctggtggacatcgggaaccagaag 451
||||||||||||||||||||||||||
Sbjct: 78535 agctggtggacatcgggaaccagaag 78560
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 55,792,069
Number of extensions: 329
Number of successful extensions: 329
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 14
Length of query: 2093
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2071
Effective length of database: 2,808,408,574
Effective search space: 5816214156754
Effective search space used: 5816214156754
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)