Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007397
(2004 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_991371.1| lysosomal-associated transmembrane protein 4B [... 374 e-103
Alignment gi|XP_602449.3| PREDICTED: Lysosomal protein transmembrane 4 be... 263 4e-70
Alignment gi|XP_002690106.1| PREDICTED: lysosomal-associated protein tran... 260 4e-69
Alignment gi|NP_991368.1| lysosomal-associated transmembrane protein 4A [... 176 5e-44
>ref|NP_991371.1| lysosomal-associated transmembrane protein 4B [Bos taurus].
Length = 226
Score = 374 bits (961), Expect = e-103
Identities = 178/226 (78%), Positives = 185/226 (81%)
Frame = +3
Query: 237 MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSEL 416
MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWY DPD YHFSSSEL
Sbjct: 1 MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYLILNAVVLLILLSALADPDHYHFSSSEL 60
Query: 417 GGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAI 596
GGDFEFMDDAN TYGAYKQ AAWIIPFFCYQIFDFALNTLVA+
Sbjct: 61 GGDFEFMDDANMCIAIAISVLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNTLVAV 120
Query: 597 TILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCY 776
T+LVYPNSIQEYIRQLPP+FPYKDDIM+VNPTCLVLIILLFISI+L FKGYLISCVWNCY
Sbjct: 121 TVLVYPNSIQEYIRQLPPDFPYKDDIMSVNPTCLVLIILLFISIILAFKGYLISCVWNCY 180
Query: 777 RYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
RYINGRNSSDVLVYVTSND+TVLLPPYD+A N A KEPPPPYVSA
Sbjct: 181 RYINGRNSSDVLVYVTSNDSTVLLPPYDDATVNSATKEPPPPYVSA 226
>ref|XP_602449.3| PREDICTED: Lysosomal protein transmembrane 4 beta-like [Bos
taurus].
Length = 557
Score = 263 bits (672), Expect = 4e-70
Identities = 131/193 (67%), Positives = 139/193 (72%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSELGGDFEFMD 440
R+ + C L C TILLGVWY DP YHFS SEL GDFEFMD
Sbjct: 369 RYSCSQCKLLC-----TILLGVWYLIVNAVVLLILLNTLADPYHYHFSRSELRGDFEFMD 423
Query: 441 DANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAITILVYPNS 620
DAN TYGAYKQHAAWIIPFFCY+IFDFALNTLV +TILVYPNS
Sbjct: 424 DANMCIAIVISFLMILICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNS 483
Query: 621 IQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCYRYINGRNS 800
IQEY RQLPP+ PYKDDIM+VNPTCLVL+ILLFISI+L FKGYLISCVWNCYRY GRNS
Sbjct: 484 IQEYTRQLPPDIPYKDDIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNS 543
Query: 801 SDVLVYVTSNDTT 839
SDVLVYVTSNDTT
Sbjct: 544 SDVLVYVTSNDTT 556
>ref|XP_002690106.1| PREDICTED: lysosomal-associated protein transmembrane 4B-like [Bos
taurus].
Length = 185
Score = 260 bits (664), Expect = 4e-69
Identities = 127/177 (71%), Positives = 133/177 (75%)
Frame = +3
Query: 309 TILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSELGGDFEFMDDANXXXXXXXXXXXXX 488
TILLGVWY DP YHFS SEL GDFEFMDDAN
Sbjct: 8 TILLGVWYLIVNAVVLLILLNTLADPYHYHFSRSELRGDFEFMDDANMCIAIVISFLMIL 67
Query: 489 XXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAITILVYPNSIQEYIRQLPPNFPYKD 668
TYGAYKQHAAWIIPFFCY+IFDFALNTLV +TILVYPNSIQEY RQLPP+ PYKD
Sbjct: 68 ICAMATYGAYKQHAAWIIPFFCYRIFDFALNTLVVVTILVYPNSIQEYTRQLPPDIPYKD 127
Query: 669 DIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTT 839
DIM+VNPTCLVL+ILLFISI+L FKGYLISCVWNCYRY GRNSSDVLVYVTSNDTT
Sbjct: 128 DIMSVNPTCLVLVILLFISIILAFKGYLISCVWNCYRYTTGRNSSDVLVYVTSNDTT 184
>ref|NP_991368.1| lysosomal-associated transmembrane protein 4A [Bos taurus].
Length = 233
Score = 176 bits (447), Expect = 5e-44
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA 233
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 73,638,068
Number of extensions: 1958643
Number of successful extensions: 6737
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6717
Number of HSP's successfully gapped: 5
Length of query: 668
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 559
Effective length of database: 14,074,782
Effective search space: 7867803138
Effective search space used: 7867803138
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007397
(2004 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532277.2| PREDICTED: similar to lysosomal-associated tran... 383 e-106
Alignment gi|XP_532885.1| PREDICTED: similar to lysosomal-associated prot... 176 6e-44
>ref|XP_532277.2| PREDICTED: similar to lysosomal-associated transmembrane protein 4
beta [Canis familiaris].
Length = 393
Score = 383 bits (984), Expect = e-106
Identities = 184/238 (77%), Positives = 192/238 (80%)
Frame = +3
Query: 201 ARAHASGPAVGAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXX 380
AR+ A GAMK VAPW RFYS+SCCLCCHVRTG ILLGVWY
Sbjct: 156 ARSRHGALAAGAMKSVAPWRRFYSSSCCLCCHVRTGAILLGVWYLIINAVVLLILLSALA 215
Query: 381 DPDQYHFSSSELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQ 560
DPDQYHFSSSELGGDFEFMDDAN TYGAYKQ AAWIIPFFCYQ
Sbjct: 216 DPDQYHFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQ 275
Query: 561 IFDFALNTLVAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTF 740
IFDFALNTLVA+T+LVYPNSIQEYIRQLPPNFPY+DDIM+VNPTCLVLIILLFISI+LTF
Sbjct: 276 IFDFALNTLVAVTVLVYPNSIQEYIRQLPPNFPYRDDIMSVNPTCLVLIILLFISIILTF 335
Query: 741 KGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
KGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYD+A NGAAKEPPPPYVSA
Sbjct: 336 KGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVSA 393
>ref|XP_532885.1| PREDICTED: similar to lysosomal-associated protein transmembrane 4
alpha [Canis familiaris].
Length = 233
Score = 176 bits (447), Expect = 6e-44
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA 233
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 76,825,549
Number of extensions: 2020471
Number of successful extensions: 6926
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6918
Number of HSP's successfully gapped: 3
Length of query: 668
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 559
Effective length of database: 15,240,880
Effective search space: 8519651920
Effective search space used: 8519651920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007397
(2004 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060877.3| lysosomal-associated transmembrane protein 4B [... 392 e-109
Alignment gi|NP_055528.1| lysosomal-associated transmembrane protein 4A [... 175 1e-43
>ref|NP_060877.3| lysosomal-associated transmembrane protein 4B [Homo sapiens].
Length = 317
Score = 392 bits (1007), Expect = e-109
Identities = 190/243 (78%), Positives = 200/243 (82%)
Frame = +3
Query: 186 LLQTWARAHASGPAVGAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXX 365
LL+T ARA A+ P GAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWY
Sbjct: 77 LLKTCARARATAP--GAMKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYLIINAVVLLIL 134
Query: 366 XXXXXDPDQYHFSSSELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIP 545
DPDQY+FSSSELGGDFEFMDDAN TYGAYKQ AAWIIP
Sbjct: 135 LSALADPDQYNFSSSELGGDFEFMDDANMCIAIAISLLMILICAMATYGAYKQRAAWIIP 194
Query: 546 FFCYQIFDFALNTLVAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFIS 725
FFCYQIFDFALN LVAIT+L+YPNSIQEYIRQLPPNFPY+DD+M+VNPTCLVLIILLFIS
Sbjct: 195 FFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFIS 254
Query: 726 IMLTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPY 905
I+LTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYD+A NGAAKEPPPPY
Sbjct: 255 IILTFKGYLISCVWNCYRYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPY 314
Query: 906 VSA 914
VSA
Sbjct: 315 VSA 317
>ref|NP_055528.1| lysosomal-associated transmembrane protein 4A [Homo sapiens].
Length = 233
Score = 175 bits (444), Expect = 1e-43
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNVPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYLPA 233
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 75,323,126
Number of extensions: 1983027
Number of successful extensions: 6826
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6806
Number of HSP's successfully gapped: 3
Length of query: 668
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 559
Effective length of database: 14,704,088
Effective search space: 8219585192
Effective search space used: 8219585192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007397
(2004 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_277056.1| lysosomal-associated transmembrane protein 4B [... 363 e-100
Alignment gi|NP_032666.2| lysosomal-associated transmembrane protein 4A [... 174 2e-43
>ref|NP_277056.1| lysosomal-associated transmembrane protein 4B [Mus musculus].
Length = 227
Score = 363 bits (933), Expect = e-100
Identities = 175/227 (77%), Positives = 185/227 (81%), Gaps = 1/227 (0%)
Frame = +3
Query: 237 MKMVAPWTRFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPDQYHFSSSEL 416
MKMVAPWTRFYS+SCCLCCHVRTGTILLGVWY DP+QYHFS SEL
Sbjct: 1 MKMVAPWTRFYSHSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPNQYHFSGSEL 60
Query: 417 GGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTLVAI 596
GG+FEFMDDAN TYGAYKQHAAWIIPFFCYQIFDFALNTLVAI
Sbjct: 61 GGEFEFMDDANMCIAIAISLLMILICAMATYGAYKQHAAWIIPFFCYQIFDFALNTLVAI 120
Query: 597 TILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVWNCY 776
T+LVYPNSIQEYIRQLPP+FPY+DDIM+VNPTCLVLIILLFI I+LT KGYLISCVW+CY
Sbjct: 121 TVLVYPNSIQEYIRQLPPSFPYRDDIMSVNPTCLVLIILLFIGILLTLKGYLISCVWSCY 180
Query: 777 RYINGRNSSDVLVYVTSNDTTVLLPPYDEAPA-NGAAKEPPPPYVSA 914
RYINGRNSSDVLVYVTSNDTTVLLPPYD+A A AKEPPPPYVSA
Sbjct: 181 RYINGRNSSDVLVYVTSNDTTVLLPPYDDATAVPSTAKEPPPPYVSA 227
>ref|NP_032666.2| lysosomal-associated transmembrane protein 4A [Mus musculus].
Length = 308
Score = 174 bits (442), Expect = 2e-43
Identities = 93/229 (40%), Positives = 121/229 (52%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 88 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSMPAVNIQYEVIGNYYS 147
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 148 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 200
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F + + FK YLI+CVW
Sbjct: 201 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFVVFIIFKAYLINCVW 259
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 260 NCYKYINNRNVPEIAVYPAFETPPQYVLPTYEMAVKIPEKEPPPPYLPA 308
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 63,908,082
Number of extensions: 1668073
Number of successful extensions: 5301
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5284
Number of HSP's successfully gapped: 3
Length of query: 668
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 560
Effective length of database: 12,373,671
Effective search space: 6929255760
Effective search space used: 6929255760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007397
(2004 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125385.1| PREDICTED: lysosomal-associated transmembran... 176 3e-44
>ref|XP_003125385.1| PREDICTED: lysosomal-associated transmembrane protein 4A-like [Sus
scrofa].
Length = 233
Score = 176 bits (447), Expect = 3e-44
Identities = 93/229 (40%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Frame = +3
Query: 261 RFYSNSCCLCCHVRTGTILLGVWYXXXXXXXXXXXXXXXXDPD-------QY----HFSS 407
RFYS CC CCHVRTGTI+LG WY P+ QY ++ S
Sbjct: 13 RFYSTRCCGCCHVRTGTIILGTWYMVVNLLMAILLTVEVTHPNSVPAVNIQYEVIGNYYS 72
Query: 408 SELGGDFEFMDDANXXXXXXXXXXXXXXXXXXTYGAYKQHAAWIIPFFCYQIFDFALNTL 587
SE D N YGA W+IPFFCY++FDF L+ L
Sbjct: 73 SERMAD-------NACVLFAVSVLMFIISSMLVYGAISYQVGWLIPFFCYRLFDFVLSCL 125
Query: 588 VAITILVYPNSIQEYIRQLPPNFPYKDDIMAVNPTCLVLIILLFISIMLTFKGYLISCVW 767
VAI+ L Y I+EY+ QLP +FPYKDD++A++ +CL+ I+L+F ++ + FK YLI+CVW
Sbjct: 126 VAISSLTYLPRIKEYLDQLP-DFPYKDDLLALDSSCLLFIVLVFFALFIIFKAYLINCVW 184
Query: 768 NCYRYINGRNSSDVLVYVTSNDTTVLLPPYDEAPANGAAKEPPPPYVSA 914
NCY+YIN RN ++ VY + P E KEPPPPY+ A
Sbjct: 185 NCYKYINNRNMPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 47,477,241
Number of extensions: 1261992
Number of successful extensions: 4372
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4365
Number of HSP's successfully gapped: 2
Length of query: 668
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 562
Effective length of database: 8,704,850
Effective search space: 4892125700
Effective search space used: 4892125700
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007397
(2004 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 2058 0.0
Sscrofa_Chr14 517 e-144
Sscrofa_Chr10 507 e-141
>Sscrofa_Chr04
|| Length = 143465943
Score = 2058 bits (1038), Expect = 0.0
Identities = 1106/1133 (97%), Gaps = 1/1133 (0%)
Strand = Plus / Minus
Query: 839 ggtgctgttgcctccgtatgatgaggccccagcgaatggcgctgccaaggagccgccgcc 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978420 ggtgctgttgcctccgtatgatgaggccccagcgaatggcgctgccaaggagccgccgcc 41978361
Query: 899 accttacgtgtctgcctagacctggaagtgggcacagctgagagcgacagcttgcctctc 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978360 accttacgtgtctgcctagacctggaagtgggcacagctgagagcgacagcttgcctctc 41978301
Query: 959 agacatcagagcaatagttctttaatttcacttctgagatgagctctctgagcttttttg 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978300 agacatcagagcaatagttctttaatttcacttctgagatgagctctctgagcttttttg 41978241
Query: 1019 ttgcagagatgctccagtttaaaatgttagatgttaagttgaaactatctgtagttcgaa 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978240 ttgcagagatgctccagtttaaaatgttagatgttaagttgaaactatctgtagttcgaa 41978181
Query: 1079 acatatgctttttagctagagcactgtattagagtaactgtagcattttccctgtggggg 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978180 acatatgctttttagctagagcactgtattagagtaactgtagcattttccctgtggggg 41978121
Query: 1139 gtgggagcggtgggctcccctggtgtcccctcagcatccacactgaacccccagcatcca 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978120 gtgggagcggtgggctcccctggtgtcccctcagcatccacactgaacccccagcatcca 41978061
Query: 1199 agaatttgtgtcccttctctctgttccctctttctcttttgcaagtgtgaaagaaaacca 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978060 agaatttgtgtcccttctctctgttccctctttctcttttgcaagtgtgaaagaaaacca 41978001
Query: 1259 aaattagacagtgcttttcttaggccattccagtgcatagaacaaaccctgaggagagcc 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41978000 aaattagacagtgcttttcttaggccattccagtgcatagaacaaaccctgaggagagcc 41977941
Query: 1319 agggatgttaattacggaaggaggccatgtatatacattaataaaacaggcatttcctca 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41977940 agggatgttaattacggaaggaggccatgtatatacattaataaaacaggcatttcctca 41977881
Query: 1379 gatccctttatgatttaaattcggtggcagtttgattttgctggtcgagtattttggcca 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41977880 gatccctttatgatttaaattcggtggcagtttgattttgctggtcgagtattttggcca 41977821
Query: 1439 caggctaaattgagaccctttgaccatcccgggcagtgagagccagcagtcaccccttcc 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41977820 caggctaaattgagaccctttgaccatcccgggcagtgagagccagcagtcaccccttcc 41977761
Query: 1499 cagtggccgctcctgtcacttgtgtctggggtcgtggcatggcgtgttnnnnnnncaact 1558
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 41977760 cagtggccgctcctgtcacttgtgtctggggtcgtggcatggcgtgttgggggggcaact 41977701
Query: 1559 cttttgtttggtagtgcatggtgtcggggtt-nnnnnnnnntttctggtttcccatcccc 1617
||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 41977700 cttttgtttggtagtgcatggtgtcggggttcccccccccctttctggtttcccatcccc 41977641
Query: 1618 cttcagagccccctttcactaaacgttctgccctagcctgactcaggacatccggcatcc 1677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41977640 cttcagagccccctttcactaaacgttctgccctagcctgactcaggacatccggcatcc 41977581
Query: 1678 tttgttcagcgggatttctggtccatatttacctagcaatataaggagaggcttctctcc 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41977580 tttgttcagcgggatttctggtccatatttacctagcaatataaggagaggcttctctcc 41977521
Query: 1738 tgcaaggcacgtctcattgcacgtctaataattacacctcgtcttcttttacaatgagta 1797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41977520 tgcaaggcacgtctcattgcacgtctaataattacacctcgtcttcttttacaatgagta 41977461
Query: 1798 taaaacagtgttctcggaataancggagggagggtgctttccttgtgaaatgcccttatc 1857
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 41977460 taaaacagtgttctcggaataacgggagggagggtgctttccttgtgaaatgcccttatc 41977401
Query: 1858 tgaactacctgtatcttgggggacttttaaatattcctgtgttcaaaagccacagctctc 1917
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 41977400 tggactacctgtatcttgggggacttttatatattcctgtgttcaaaagccacagctctc 41977341
Query: 1918 cctgtgggtcatctttgaatgtgctatatacatgaaagcctttgcaattaaaa 1970
| ||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 41977340 ctgttggttcatctttgaatgtgctatatacatgaaggcttttgcaattaaaa 41977288
Score = 636 bits (321), Expect = e-179
Identities = 321/321 (100%)
Strand = Plus / Minus
Query: 15 cccgcagccttcggagctcagggtccggtcgctgcagcaactccgagctctcgagcgaag 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42059931 cccgcagccttcggagctcagggtccggtcgctgcagcaactccgagctctcgagcgaag 42059872
Query: 75 cgcggggcgagggcgggccagcggcaagaagggccaggagccggagtcttggcgggagcg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42059871 cgcggggcgagggcgggccagcggcaagaagggccaggagccggagtcttggcgggagcg 42059812
Query: 135 gccgaggagcccccagcaaccgcgcggcggccctgagctacgcggccgaagctcctgcaa 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42059811 gccgaggagcccccagcaaccgcgcggcggccctgagctacgcggccgaagctcctgcaa 42059752
Query: 195 acttgggcgcgcgctcacgccagtgggccggcggtcggagcgatgaagatggtggccccc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42059751 acttgggcgcgcgctcacgccagtgggccggcggtcggagcgatgaagatggtggccccc 42059692
Query: 255 tggacgcggttctactccaacagctgctgcctgtgctgccatgtccgcacgggcaccatc 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42059691 tggacgcggttctactccaacagctgctgcctgtgctgccatgtccgcacgggcaccatc 42059632
Query: 315 ctgctgggcgtctggtacctg 335
|||||||||||||||||||||
Sbjct: 42059631 ctgctgggcgtctggtacctg 42059611
Score = 248 bits (125), Expect = 1e-62
Identities = 125/125 (100%)
Strand = Plus / Minus
Query: 520 agcaacacgcagcctggatcatccccttcttctgctaccagatctttgattttgccctga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42011656 agcaacacgcagcctggatcatccccttcttctgctaccagatctttgattttgccctga 42011597
Query: 580 acaccttggttgcaatcaccatccttgtgtatccaaactccatccaggaatacatacgac 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42011596 acaccttggttgcaatcaccatccttgtgtatccaaactccatccaggaatacatacgac 42011537
Query: 640 agctg 644
|||||
Sbjct: 42011536 agctg 42011532
Score = 224 bits (113), Expect = 1e-55
Identities = 113/113 (100%)
Strand = Plus / Minus
Query: 335 gatcatcaatgcagtggtgctgttgattctgctgagcgccctggctgatcccgatcagta 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42030272 gatcatcaatgcagtggtgctgttgattctgctgagcgccctggctgatcccgatcagta 42030213
Query: 395 tcacttttcaagttctgaactaggaggtgactttgagttcatggatgatgcca 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42030212 tcacttttcaagttctgaactaggaggtgactttgagttcatggatgatgcca 42030160
Score = 200 bits (101), Expect = 2e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 644 gcctcctaattttccttacaaagatgatatcatggcggtgaatcctacctgtttggtcct 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42006614 gcctcctaattttccttacaaagatgatatcatggcggtgaatcctacctgtttggtcct 42006555
Query: 704 tattattcttctgtttatcagcatcatgttgacttttaagg 744
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 42006554 tattattcttctgtttatcagcatcatgttgacttttaagg 42006514
Score = 198 bits (100), Expect = 8e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 742 agggttacttgattagctgtgtttggaactgctaccgatacatcaatggcaggaattcct 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42001966 agggttacttgattagctgtgtttggaactgctaccgatacatcaatggcaggaattcct 42001907
Query: 802 ccgacgtcctggtttatgttaccagcaatgacactacggt 841
||||||||||||||||||||||||||||||||||||||||
Sbjct: 42001906 ccgacgtcctggtttatgttaccagcaatgacactacggt 42001867
Score = 147 bits (74), Expect = 3e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 448 acatgtgcattgctatcgccatttctcttctcatgatcctgatctgtgcgatggcgactt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42012095 acatgtgcattgctatcgccatttctcttctcatgatcctgatctgtgcgatggcgactt 42012036
Query: 508 acggagcatacaag 521
||||||||||||||
Sbjct: 42012035 acggagcatacaag 42012022
>Sscrofa_Chr14
|| Length = 153851969
Score = 517 bits (261), Expect = e-144
Identities = 452/510 (88%), Gaps = 23/510 (4%)
Strand = Plus / Plus
Query: 873 aatggcgctgccaaggagccgccgcc-----accttacgtgtctgcctagacctggaagt 927
|||||||||||||||||||||||| | ||| ||||||||||||||| || ||||||
Sbjct: 122265655 aatggcgctgccaaggagccgccgacgtgacaccgtacgtgtctgcctaggcccggaagt 122265714
Query: 928 gggcacagctgagagcgacagcttgcctctcagacatcagagcaatagttctttaatttc 987
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 122265715 cggcgcagctgaaagcga-agcttgcctctcagacatcagagcaatagttctttaatttt 122265773
Query: 988 acttctgagatgagctctctgagcttttttgttgcagagatgctccagtttaaaatgtta 1047
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 122265774 acttctgagatgagctctctgagcttttttgttgctgagatgctccagtttaaaatgtta 122265833
Query: 1048 gatgttaagttgaaactatctgtagttcgaaacatatgctttttagctagagcactgtat 1107
||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||
Sbjct: 122265834 gatgttaagttgaaactatctgtagtttgaaac--atgc--tttagctagagcactgtaa 122265889
Query: 1108 tagagtaactgtagcattttccctgtggggggtgggagcggtggg-ctcccctggtgtcc 1166
|||||||||| ||||||||||||||||| ||| ||| |||| | |||||||| |||
Sbjct: 122265890 tagagtaactatagcattttccctgtgg-----gggtgcgatgggccccccctggtctcc 122265944
Query: 1167 cctcagcatccacactgaacccccagcatccaagaatttgtgtcccttctctctgttccc 1226
||||| | | ||| ||||||||||| |||||||||||||||| | |||||| | ||| ||
Sbjct: 122265945 cctcaacgtacacgctgaacccccaacatccaagaatttgtgacgcttctcaccgtttcc 122266004
Query: 1227 tctttctcttttgcaagtgtgaaagaaaaccaaaattagacagtgcttttcttaggccat 1286
|||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 122266005 tctttc------gcaagtatataagaaaaccaaaattagacagtgcttttcttaggccat 122266058
Query: 1287 tccagtgcatagaacaaaccctgaggagagccagggatgttaattacggaaggaggccat 1346
|||||| |||||||||||||||||||||| ||||||||||||||| |||||||| ||||
Sbjct: 122266059 tccagtacatagaacaaaccctgaggaga-acagggatgttaattatggaaggagtccat 122266117
Query: 1347 gtatatacattaataaaacaggcatttcct 1376
||||||| |||||||||||| |||||||||
Sbjct: 122266118 gtatatatattaataaaacaagcatttcct 122266147
>Sscrofa_Chr10
|| Length = 79102373
Score = 507 bits (256), Expect = e-141
Identities = 644/766 (84%), Gaps = 18/766 (2%)
Strand = Plus / Minus
Query: 346 cagtggtgctgttgattctgctgagcgccctggctgatcccgatcagtatcacttttcaa 405
|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct: 76685866 cagtggtgctgttgattctgctgagcatcatggctgatcatgatcagtatcacttttcaa 76685807
Query: 406 gttctgaactaggaggtgactttgagttcatggatgatgccaacatgtgcattgctatcg 465
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 76685806 gctctgaactaggaggtgactttgagttcatagatgatgccaacatgtgcattgctattg 76685747
Query: 466 ccatttctcttctcatgatcctgatctgtgcgatggcgacttacggagcatacaagcaac 525
| ||||||||||| ||||||| |||||| | || | ||||| |||| ||| ||
Sbjct: 76685746 caatttctcttcttgtgatcctaatctgtacagtgactactta---agca-acac---ac 76685694
Query: 526 acgcagcctggatcatccccttcttctgctaccagatctttgattttgccctgaacacct 585
|| ||||||||||||||| | |||||| ||||||| ||||||||||| |||||| | |
Sbjct: 76685693 acagagcctggatcatcccatccttctgttaccagacctttgattttgtcctgaatatcc 76685634
Query: 586 tggttgcaatcaccatccttgtgtatccaaactccatccaggaatacatacgacagctgc 645
| |||||| ||| | ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 76685633 ttgttgcagtcagtgtgcttgtttatccaaactccattcaggaatacat--gatagctgc 76685576
Query: 646 ctcctaattttccttacaaagatgatatcatggcggtgaatcctacctgtttggtcctta 705
|||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||
Sbjct: 76685575 ctcctaattttccttacaaagacagtaacatgttggtgaatcctacctgtttgatcctta 76685516
Query: 706 ttattcttctgtttatcagcatcatgttgacttttaagggttacttgattagctgtgttt 765
|| ||||||||||||||||||| || || |||||||||||||| || |||||||| |||
Sbjct: 76685515 ttcttcttctgtttatcagcattatcttaacttttaagggttattttattagctgcattt 76685456
Query: 766 ggaactgctaccgatacatcaatggcaggaattcctccgacgtcctggtttatgttacca 825
||||||||||| |||| ||||||| |||||| ||||| || || |||| |||||||||||
Sbjct: 76685455 ggaactgctactgatatatcaatgacaggaactcctctgatgt-ctggcttatgttacca 76685397
Query: 826 gcaatgacactacggtgctgttgcctccgt-----atgatgaggccccagcgaatggcgc 880
|||| || || ||||||||| || || | | ||||| |||| | |||||| ||
Sbjct: 76685396 gcaaagatgctttggtgctgttacccccctcccagaggatgatgccctggtgaatggtgc 76685337
Query: 881 tgccaaggagccgccgccaccttacgtgtctgcctagacctggaagtgg-gcacagctga 939
|||||||||||| | || |||| | ||||||||| | ||||||||||| |||| ||| |
Sbjct: 76685336 tgccaaggagccactgcaacctcatgtgtctgcccatgcctggaagtggagcactgctaa 76685277
Query: 940 gagcgacagcttgcctctcagacatcagagcaatagttctttaatttcacttctgagatg 999
|| | |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 76685276 gaacaacagcttgactctcagacatcagagcaatagttctttaattttacttctgaaatg 76685217
Query: 1000 agctctctgagcttttttgttgcagagatgctccagtttaaaatgttagatgttaagttg 1059
||| |||||||||| |||||||| || ||||| | |||||| |||||||||||||||
Sbjct: 76685216 agcactctgagcttatttgttgctgaaatgctaccatttaaatatttagatgttaagttg 76685157
Query: 1060 aaactatctgtagttcgaaacatatgctttttagctagagcactgt 1105
||||| ||| ||||| ||| ||||| | |||||||| ||||||||
Sbjct: 76685156 aaactttctttagtttgaatcatatac--tttagctaaagcactgt 76685113
Score = 507 bits (256), Expect = e-141
Identities = 644/766 (84%), Gaps = 18/766 (2%)
Strand = Plus / Minus
Query: 346 cagtggtgctgttgattctgctgagcgccctggctgatcccgatcagtatcacttttcaa 405
|||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct: 76751145 cagtggtgctgttgattctgctgagcatcatggctgatcatgatcagtatcacttttcaa 76751086
Query: 406 gttctgaactaggaggtgactttgagttcatggatgatgccaacatgtgcattgctatcg 465
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 76751085 gctctgaactaggaggtgactttgagttcatagatgatgccaacatgtgcattgctattg 76751026
Query: 466 ccatttctcttctcatgatcctgatctgtgcgatggcgacttacggagcatacaagcaac 525
| ||||||||||| ||||||| |||||| | || | ||||| |||| ||| ||
Sbjct: 76751025 caatttctcttcttgtgatcctaatctgtacagtgactactta---agca-acac---ac 76750973
Query: 526 acgcagcctggatcatccccttcttctgctaccagatctttgattttgccctgaacacct 585
|| ||||||||||||||| | |||||| ||||||| ||||||||||| |||||| | |
Sbjct: 76750972 acagagcctggatcatcccatccttctgttaccagacctttgattttgtcctgaatatcc 76750913
Query: 586 tggttgcaatcaccatccttgtgtatccaaactccatccaggaatacatacgacagctgc 645
| |||||| ||| | ||||| |||||||||||||| ||||||||||| || ||||||
Sbjct: 76750912 ttgttgcagtcagtgtgcttgtttatccaaactccattcaggaatacat--gatagctgc 76750855
Query: 646 ctcctaattttccttacaaagatgatatcatggcggtgaatcctacctgtttggtcctta 705
|||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||
Sbjct: 76750854 ctcctaattttccttacaaagacagtaacatgttggtgaatcctacctgtttgatcctta 76750795
Query: 706 ttattcttctgtttatcagcatcatgttgacttttaagggttacttgattagctgtgttt 765
|| ||||||||||||||||||| || || |||||||||||||| || |||||||| |||
Sbjct: 76750794 ttcttcttctgtttatcagcattatcttaacttttaagggttattttattagctgcattt 76750735
Query: 766 ggaactgctaccgatacatcaatggcaggaattcctccgacgtcctggtttatgttacca 825
||||||||||| |||| ||||||| |||||| ||||| || || |||| |||||||||||
Sbjct: 76750734 ggaactgctactgatatatcaatgacaggaactcctctgatgt-ctggcttatgttacca 76750676
Query: 826 gcaatgacactacggtgctgttgcctccgt-----atgatgaggccccagcgaatggcgc 880
|||| || || ||||||||| || || | | ||||| |||| | |||||| ||
Sbjct: 76750675 gcaaagatgctttggtgctgttacccccctcccagaggatgatgccctggtgaatggtgc 76750616
Query: 881 tgccaaggagccgccgccaccttacgtgtctgcctagacctggaagtgg-gcacagctga 939
|||||||||||| | || |||| | ||||||||| | ||||||||||| |||| ||| |
Sbjct: 76750615 tgccaaggagccactgcaacctcatgtgtctgcccatgcctggaagtggagcactgctaa 76750556
Query: 940 gagcgacagcttgcctctcagacatcagagcaatagttctttaatttcacttctgagatg 999
|| | |||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 76750555 gaacaacagcttgactctcagacatcagagcaatagttctttaattttacttctgaaatg 76750496
Query: 1000 agctctctgagcttttttgttgcagagatgctccagtttaaaatgttagatgttaagttg 1059
||| |||||||||| |||||||| || ||||| | |||||| |||||||||||||||
Sbjct: 76750495 agcactctgagcttatttgttgctgaaatgctaccatttaaatatttagatgttaagttg 76750436
Query: 1060 aaactatctgtagttcgaaacatatgctttttagctagagcactgt 1105
||||| ||| ||||| ||| ||||| | |||||||| ||||||||
Sbjct: 76750435 aaactttctttagtttgaatcatatac--tttagctaaagcactgt 76750392
Score = 63.9 bits (32), Expect = 3e-07
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 1212 cttctctctgttccctctttctcttttgcaagtgtgaaagaaaaccaaaattagacagtg 1271
||||||||||||||| | ||||||||| |||| | || |||| |||||| || || ||
Sbjct: 76684974 cttctctctgttcccacgttctcttttaaaagtatacaataaaatcaaaatcaggcaatg 76684915
Query: 1272 cttttcttaggccattccagtgcatagaacaaaccctgaggaga 1315
| |||| |||||||||||||| |||||||||||| | ||||||
Sbjct: 76684914 catttcctaggccattccagtatatagaacaaaccattaggaga 76684871
Score = 63.9 bits (32), Expect = 3e-07
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 1212 cttctctctgttccctctttctcttttgcaagtgtgaaagaaaaccaaaattagacagtg 1271
||||||||||||||| | ||||||||| |||| | || |||| |||||| || || ||
Sbjct: 76750253 cttctctctgttcccacgttctcttttaaaagtatacaataaaatcaaaatcaggcaatg 76750194
Query: 1272 cttttcttaggccattccagtgcatagaacaaaccctgaggaga 1315
| |||| |||||||||||||| |||||||||||| | ||||||
Sbjct: 76750193 catttcctaggccattccagtatatagaacaaaccattaggaga 76750150
Score = 60.0 bits (30), Expect = 5e-06
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 236 gatgaagatggtggccccctggacgcggttctactccaacagctgctgcc 285
||||||||| ||||||||||| || | |||||||||||| ||||||||||
Sbjct: 76685934 gatgaagattgtggccccctgaacacagttctactccaatagctgctgcc 76685885
Score = 60.0 bits (30), Expect = 5e-06
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 236 gatgaagatggtggccccctggacgcggttctactccaacagctgctgcc 285
||||||||| ||||||||||| || | |||||||||||| ||||||||||
Sbjct: 76751213 gatgaagattgtggccccctgaacacagttctactccaatagctgctgcc 76751164
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,974,252
Number of extensions: 368
Number of successful extensions: 368
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 21
Length of query: 2004
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1982
Effective length of database: 2,808,408,574
Effective search space: 5566265793668
Effective search space used: 5566265793668
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)