Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007398
(647 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus]. 124 5e-29
Alignment gi|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 i... 124 5e-29
Alignment gi|NP_001179595.1| protein S100-Z [Bos taurus]. 68 6e-12
Alignment gi|XP_002690462.1| PREDICTED: S100 calcium binding protein, zet... 68 6e-12
Alignment gi|NP_001029727.1| protein S100-B [Bos taurus]. 68 7e-12
Alignment gi|NP_001029539.1| protein S100-A2 [Bos taurus]. 64 1e-10
Alignment gi|NP_777020.1| protein S100-A4 [Bos taurus]. 60 2e-09
Alignment gi|NP_777075.1| protein S100-A10 [Bos taurus]. 55 6e-08
Alignment gi|NP_001092326.1| protein S100-A11 [Bos taurus]. 54 1e-07
Alignment gi|NP_001179144.1| protein S100-A5 [Bos taurus]. 51 7e-07
>ref|NP_001092512.1| S100 calcium binding protein A1 [Bos taurus].
Length = 94
Score = 124 bits (312), Expect = 5e-29
Identities = 65/94 (69%), Positives = 65/94 (69%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
MGSELETAMETLINVFHAHSGKEGD SGFL MK
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 94
>ref|XP_001253745.1| PREDICTED: S100 calcium binding protein A1 isoform 2 [Bos taurus].
Length = 94
Score = 124 bits (312), Expect = 5e-29
Identities = 65/94 (69%), Positives = 65/94 (69%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
MGSELETAMETLINVFHAHSGKEGD SGFL MK
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 94
>ref|NP_001179595.1| protein S100-Z [Bos taurus].
Length = 99
Score = 68.2 bits (165), Expect = 6e-12
Identities = 37/92 (40%), Positives = 49/92 (53%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M ++LE AM +I FH +S +EGD + FL M+
Sbjct: 1 MPTQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQ 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
+LD N D EVDF E+VV+VAALTVACN++F E
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYFVE 92
>ref|XP_002690462.1| PREDICTED: S100 calcium binding protein, zeta-like [Bos taurus].
Length = 99
Score = 68.2 bits (165), Expect = 6e-12
Identities = 37/92 (40%), Positives = 49/92 (53%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M ++LE AM +I FH +S +EGD + FL M+
Sbjct: 1 MPTQLEIAMNIMIRTFHRYSCREGDRFKLNKGELKMLLQRELTEFLSCQKDPELVDKIMQ 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
+LD N D EVDF E+VV+VAALTVACN++F E
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYFVE 92
>ref|NP_001029727.1| protein S100-B [Bos taurus].
Length = 92
Score = 67.8 bits (164), Expect = 7e-12
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
SELE A+ LI+VFH +SG+EGD S FL M+ L
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D +GDGE DFQE++ VA +T AC+ FF
Sbjct: 62 DSDGDGECDFQEFMAFVAMITTACHEFF 89
>ref|NP_001029539.1| protein S100-A2 [Bos taurus].
Length = 97
Score = 63.9 bits (154), Expect = 1e-10
Identities = 32/90 (35%), Positives = 44/90 (48%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S LE A+ ++ FH +SG+EGD F+ M
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFF 90
>ref|NP_777020.1| protein S100-A4 [Bos taurus].
Length = 101
Score = 60.1 bits (144), Expect = 2e-09
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL M
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDETAFQKLMS 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LD N D EVDFQEY V ++ + + CN FF
Sbjct: 61 NLDCNKDNEVDFQEYCVFLSCIAMMCNEFF 90
>ref|NP_777075.1| protein S100-A10 [Bos taurus].
Length = 97
Score = 54.7 bits (130), Expect = 6e-08
Identities = 31/90 (34%), Positives = 45/90 (50%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S++E AMET++ FH +G +G GFL MK
Sbjct: 1 MPSQMEHAMETMMFTFHKFAGDKG---YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LD+ DG+V FQ + L+A LT+ACN++F
Sbjct: 58 DLDQCRDGKVGFQSFFSLIAGLTIACNDYF 87
>ref|NP_001092326.1| protein S100-A11 [Bos taurus].
Length = 103
Score = 53.5 bits (127), Expect = 1e-07
Identities = 27/88 (30%), Positives = 42/88 (47%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
+E E +E+LI VF H+G++G+ F MK+L
Sbjct: 8 TETERCIESLIAVFQKHAGRDGNNSKLSKAEFLIFMNTELGAFTKNQKDPGVLDRMMKKL 67
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D N DG++DFQE++ L+ L +AC+ F
Sbjct: 68 DLNSDGQLDFQEFLNLIGGLAIACHESF 95
>ref|NP_001179144.1| protein S100-A5 [Bos taurus].
Length = 93
Score = 51.2 bits (121), Expect = 7e-07
Identities = 30/94 (31%), Positives = 43/94 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M + LE A+ T++ FH +SG+EG L MK
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELC--LGEKMRESSIDDLMK 58
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
LD+N D E+DF+EY V + L +A N+FF E +
Sbjct: 59 SLDKNSDQEIDFKEYSVFLTTLCMAYNDFFLEEN 92
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 19,007,555
Number of extensions: 485991
Number of successful extensions: 2654
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2620
Number of HSP's successfully gapped: 15
Length of query: 215
Length of database: 17,681,374
Length adjustment: 98
Effective length of query: 117
Effective length of database: 14,438,750
Effective search space: 1689333750
Effective search space used: 1689333750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007398
(647 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chai... 122 2e-28
Alignment gi|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chai... 122 2e-28
Alignment gi|XP_852856.1| PREDICTED: similar to S-100P protein [Canis fam... 65 4e-11
Alignment gi|XP_855158.1| PREDICTED: similar to S100 calcium-binding prot... 64 9e-11
Alignment gi|NP_001003161.1| protein S100-A4 [Canis lupus familiaris]. 60 1e-09
Alignment gi|XP_533060.2| PREDICTED: similar to S100 calcium-binding prot... 57 1e-08
Alignment gi|XP_548737.2| PREDICTED: similar to S-100 calcium-binding pro... 54 1e-07
Alignment gi|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium... 52 3e-07
Alignment gi|XP_853219.1| PREDICTED: similar to S100 calcium binding prot... 52 6e-07
Alignment gi|XP_537267.2| PREDICTED: similar to S100 calcium-binding prot... 50 1e-06
>ref|XP_537265.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 1 [Canis
familiaris].
Length = 94
Score = 122 bits (307), Expect = 2e-28
Identities = 64/94 (68%), Positives = 65/94 (69%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
MGSELETAMETLINVFHAHSGKEG+ SGFL MK
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 94
>ref|XP_852663.1| PREDICTED: similar to S-100 protein, alpha chain (S100
calcium-binding protein A1) isoform 2 [Canis
familiaris].
Length = 94
Score = 122 bits (307), Expect = 2e-28
Identities = 64/94 (68%), Positives = 65/94 (69%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
MGSELETAMETLINVFHAHSGKEG+ SGFL MK
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGNKYKLSKKELKELLQTELSGFLDAQKDADAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 94
>ref|XP_852856.1| PREDICTED: similar to S-100P protein [Canis familiaris].
Length = 197
Score = 65.5 bits (158), Expect = 4e-11
Identities = 37/95 (38%), Positives = 49/95 (51%)
Frame = +1
Query: 94 TVSCTMGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXX 273
+ S TM +ELETAM +I+VF ++G EG GFL
Sbjct: 98 STSSTM-TELETAMGMIISVFARYAGVEGSKQSLTKGELKVLMEKELPGFLQTKRDRDSV 156
Query: 274 XXXMKELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+K+LD NGD EVDF E++V VA LT AC+ +F
Sbjct: 157 DKLLKDLDANGDAEVDFSEFIVFVATLTAACHQYF 191
>ref|XP_855158.1| PREDICTED: similar to S100 calcium-binding protein A2 (S-100L
protein) (CAN19) [Canis familiaris].
Length = 97
Score = 64.3 bits (155), Expect = 9e-11
Identities = 32/93 (34%), Positives = 46/93 (49%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S LE A+ +++ FH +SG+EGD F+ M
Sbjct: 1 MSSPLEQALAVMVSTFHKYSGQEGDKFKLSKAEMKTLLQNELPSFVGEKVDEEGLKKLMG 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWEN 387
LDEN D +VDFQEY V +A +T+ CN+FF ++
Sbjct: 61 NLDENSDQQVDFQEYAVFLALVTIMCNDFFQDS 93
>ref|NP_001003161.1| protein S100-A4 [Canis lupus familiaris].
Length = 101
Score = 60.5 bits (145), Expect = 1e-09
Identities = 30/86 (34%), Positives = 40/86 (46%)
Frame = +1
Query: 121 LETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKELDE 300
LE A++ +++ FH +SGKEGD FL M LD
Sbjct: 5 LEKALDVMVSTFHKYSGKEGDKFKLNRSELKELLMRELPSFLGKRTDEAAFQKLMSNLDS 64
Query: 301 NGDGEVDFQEYVVLVAALTVACNNFF 378
N D EVDFQEY V ++ + + CN FF
Sbjct: 65 NRDNEVDFQEYCVFLSCVAMMCNEFF 90
>ref|XP_533060.2| PREDICTED: similar to S100 calcium-binding protein A10 [Canis
familiaris].
Length = 116
Score = 57.0 bits (136), Expect = 1e-08
Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Frame = +1
Query: 70 PAPNTPRLTVSCT---MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSG 240
P P + R VS M S++E AMET++ FH +G +G G
Sbjct: 4 PTPPSYRAAVSTDLTKMPSQMEHAMETMMFTFHKFAGDKG---YLTKEDLRVLMEKEFPG 60
Query: 241 FLXXXXXXXXXXXXMKELDENGDGEVDFQEYVVLVAALTVACNNFF 378
FL MK+LD+ DG+V FQ + L+A LT+ACN++F
Sbjct: 61 FLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLIAGLTIACNDYF 106
>ref|XP_548737.2| PREDICTED: similar to S-100 calcium-binding protein beta subunit
(S-100 protein, beta chain) [Canis familiaris].
Length = 456
Score = 53.9 bits (128), Expect = 1e-07
Identities = 30/88 (34%), Positives = 41/88 (46%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
S+LE A L++VF +S + G + FL M+ L
Sbjct: 366 SQLEKAALALLDVFQQYSARAGGGRRLRKADVKELIGSELAHFLEEIKEQEVVDKVMETL 425
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D +GDGE DFQE+V VA +T AC+ FF
Sbjct: 426 DSDGDGECDFQEFVAFVAMVTTACHEFF 453
>ref|XP_533061.1| PREDICTED: similar to Calgizzarin (S100 calcium-binding protein
A11) (S100C protein) (MLN 70) [Canis familiaris].
Length = 103
Score = 52.4 bits (124), Expect = 3e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
+E E +E+LI VF +GKEG+ + F MK+L
Sbjct: 8 TETERCIESLIAVFQKFAGKEGNNCTLSKTEFLTFMNTELAAFTKNQKDPGVLDRMMKKL 67
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D N DG++DFQE++ L+ + +AC++ F
Sbjct: 68 DLNSDGQLDFQEFLNLIGGMAIACHDSF 95
>ref|XP_853219.1| PREDICTED: similar to S100 calcium binding protein, zeta [Canis
familiaris].
Length = 321
Score = 51.6 bits (122), Expect = 6e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 283 MKELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
M++LD N D EVDF E+VV+VAALTVACN++F E
Sbjct: 279 MQDLDANKDNEVDFNEFVVMVAALTVACNDYFVE 312
>ref|XP_537267.2| PREDICTED: similar to S100 calcium-binding protein A5 (S-100D
protein) [Canis familiaris].
Length = 93
Score = 50.4 bits (119), Expect = 1e-06
Identities = 29/92 (31%), Positives = 43/92 (46%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M + LE A+ T+++ FH +SG+EG L M+
Sbjct: 1 METPLEKALTTMVSTFHKYSGREGSKLTLSRKELKELIKKELC--LGEKMKESGIDDLMR 58
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
LD+N D E+DF+EY V + L +A N+FF E
Sbjct: 59 TLDKNSDQEIDFKEYTVFLTTLCMAYNDFFLE 90
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 19,439,574
Number of extensions: 437104
Number of successful extensions: 2678
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2643
Number of HSP's successfully gapped: 11
Length of query: 215
Length of database: 18,874,504
Length adjustment: 98
Effective length of query: 117
Effective length of database: 15,607,576
Effective search space: 1826086392
Effective search space used: 1826086392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007398
(647 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006262.1| protein S100-A1 [Homo sapiens]. 124 5e-29
Alignment gi|NP_570128.2| protein S100-Z [Homo sapiens]. 70 2e-12
Alignment gi|NP_006263.1| protein S100-B [Homo sapiens]. 69 3e-12
Alignment gi|NP_005971.1| protein S100-P [Homo sapiens]. 66 3e-11
Alignment gi|NP_062427.1| protein S100-A4 [Homo sapiens]. 62 4e-10
Alignment gi|NP_002952.1| protein S100-A4 [Homo sapiens]. 62 4e-10
Alignment gi|NP_005969.1| protein S100-A2 [Homo sapiens]. 61 9e-10
Alignment gi|NP_002957.1| protein S100-A10 [Homo sapiens]. 55 7e-08
Alignment gi|NP_002953.2| protein S100-A5 [Homo sapiens]. 50 2e-06
Alignment gi|NP_005611.1| protein S100-A11 [Homo sapiens]. 50 2e-06
>ref|NP_006262.1| protein S100-A1 [Homo sapiens].
Length = 94
Score = 124 bits (312), Expect = 5e-29
Identities = 65/94 (69%), Positives = 65/94 (69%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
MGSELETAMETLINVFHAHSGKEGD SGFL MK
Sbjct: 1 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 94
>ref|NP_570128.2| protein S100-Z [Homo sapiens].
Length = 99
Score = 69.7 bits (169), Expect = 2e-12
Identities = 37/92 (40%), Positives = 51/92 (55%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M ++LE AM+T+I +FH +SGKE + FL ++
Sbjct: 1 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
+LD N D EVDF E+VV+VAALTVACN++F E
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYFVE 92
>ref|NP_006263.1| protein S100-B [Homo sapiens].
Length = 92
Score = 68.9 bits (167), Expect = 3e-12
Identities = 37/88 (42%), Positives = 46/88 (52%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
SELE AM LI+VFH +SG+EGD S FL M+ L
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D +GDGE DFQE++ VA +T AC+ FF
Sbjct: 62 DNDGDGECDFQEFMAFVAMVTTACHEFF 89
>ref|NP_005971.1| protein S100-P [Homo sapiens].
Length = 95
Score = 65.9 bits (159), Expect = 3e-11
Identities = 34/88 (38%), Positives = 46/88 (52%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
+ELETAM +I+VF +SG EG GFL +K+L
Sbjct: 2 TELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDL 61
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D NGD +VDF E++V VAA+T AC+ +F
Sbjct: 62 DANGDAQVDFSEFIVFVAAITSACHKYF 89
>ref|NP_062427.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL M
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LD N D EVDFQEY V ++ + + CN FF
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>ref|NP_002952.1| protein S100-A4 [Homo sapiens].
Length = 101
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL M
Sbjct: 1 MACPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LD N D EVDFQEY V ++ + + CN FF
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>ref|NP_005969.1| protein S100-A2 [Homo sapiens].
Length = 97
Score = 60.8 bits (146), Expect = 9e-10
Identities = 33/90 (36%), Positives = 42/90 (46%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S LE A+ L+ FH +S +EGD F+ M
Sbjct: 1 MCSSLEQALAVLVTTFHKYSCQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LDEN D +VDFQEY V +A +TV CN+FF
Sbjct: 61 SLDENSDQQVDFQEYAVFLALITVMCNDFF 90
>ref|NP_002957.1| protein S100-A10 [Homo sapiens].
Length = 97
Score = 54.7 bits (130), Expect = 7e-08
Identities = 31/90 (34%), Positives = 45/90 (50%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S++E AMET++ FH +G +G GFL MK
Sbjct: 1 MPSQMEHAMETMMFTFHKFAGDKG---YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LD+ DG+V FQ + L+A LT+ACN++F
Sbjct: 58 DLDQCRDGKVGFQSFFSLIAGLTIACNDYF 87
>ref|NP_002953.2| protein S100-A5 [Homo sapiens].
Length = 92
Score = 49.7 bits (117), Expect = 2e-06
Identities = 29/94 (30%), Positives = 43/94 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M + LE A+ T++ FH +SG+EG MK
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKE---LCLGEMKESSIDDLMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
LD+N D E+DF+EY V + L +A N+FF E++
Sbjct: 58 SLDKNSDQEIDFKEYSVFLTMLCMAYNDFFLEDN 91
>ref|NP_005611.1| protein S100-A11 [Homo sapiens].
Length = 105
Score = 49.7 bits (117), Expect = 2e-06
Identities = 26/88 (29%), Positives = 42/88 (47%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
+E E +E+LI VF ++GK+G + F MK+L
Sbjct: 8 TETERCIESLIAVFQKYAGKDGYNYTLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMKKL 67
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D N DG++DF E++ L+ L +AC++ F
Sbjct: 68 DTNSDGQLDFSEFLNLIGGLAMACHDSF 95
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 19,104,935
Number of extensions: 425585
Number of successful extensions: 2779
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2711
Number of HSP's successfully gapped: 11
Length of query: 215
Length of database: 18,297,164
Length adjustment: 98
Effective length of query: 117
Effective length of database: 15,066,692
Effective search space: 1762802964
Effective search space used: 1762802964
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007398
(647 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035439.1| protein S100-A1 [Mus musculus]. 119 2e-27
Alignment gi|NP_001074628.1| protein S100-Z [Mus musculus]. 74 1e-13
Alignment gi|NP_033141.1| protein S100-B [Mus musculus]. 71 8e-13
Alignment gi|NP_035441.1| protein S100-A4 [Mus musculus]. 62 4e-10
Alignment gi|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus muscul... 56 3e-08
Alignment gi|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [... 56 3e-08
Alignment gi|XP_003086436.1| PREDICTED: protein S100-A11-like isoform 1 [... 56 3e-08
Alignment gi|NP_058020.1| protein S100-A11 [Mus musculus]. 55 3e-08
Alignment gi|NP_033138.1| protein S100-A10 [Mus musculus]. 55 3e-08
Alignment gi|NP_035442.1| protein S100-A5 [Mus musculus]. 54 1e-07
>ref|NP_035439.1| protein S100-A1 [Mus musculus].
Length = 94
Score = 119 bits (298), Expect = 2e-27
Identities = 62/94 (65%), Positives = 64/94 (68%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
MGSELE+AMETLINVFHAHSGKEGD SGFL MK
Sbjct: 1 MGSELESAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSGFLDVQKDADAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDF+EYVVLVAALTVACNNFFWE S
Sbjct: 61 ELDENGDGEVDFKEYVVLVAALTVACNNFFWETS 94
>ref|NP_001074628.1| protein S100-Z [Mus musculus].
Length = 99
Score = 73.6 bits (179), Expect = 1e-13
Identities = 39/92 (42%), Positives = 52/92 (56%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M ++LE AM+T+I +FH +S KEGD + FL M+
Sbjct: 1 MPTQLEMAMDTMIRIFHRYSCKEGDRFKLNKGELKMLLQRELTEFLTCQKDPQLVDKIMQ 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
+LD N D EVDF E+VV+VAALTVACN++F E
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYFVE 92
>ref|NP_033141.1| protein S100-B [Mus musculus].
Length = 92
Score = 70.9 bits (172), Expect = 8e-13
Identities = 38/88 (43%), Positives = 47/88 (53%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
SELE AM LI+VFH +SG+EGD S FL M+ L
Sbjct: 2 SELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETL 61
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
DE+GDGE DFQE++ VA +T AC+ FF
Sbjct: 62 DEDGDGECDFQEFMAFVAMVTTACHEFF 89
>ref|NP_035441.1| protein S100-A4 [Mus musculus].
Length = 101
Score = 62.0 bits (149), Expect = 4e-10
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL M
Sbjct: 1 MARPLEEALDVIVSTFHKYSGKEGDKFKLNKTELKELLTRELPSFLGKRTDEAAFQKVMS 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LD N D EVDFQEY V ++ + + CN FF
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>ref|XP_003084639.1| PREDICTED: protein S100-A11-like [Mus musculus].
Length = 96
Score = 55.8 bits (133), Expect = 3e-08
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M +E E +E+LI VF +SGK+G+ + F MK
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
+LD N DG++DFQE++ L+ +L +AC++ F + S
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGSLAIACHDSFIQTS 94
>ref|XP_003086437.1| PREDICTED: protein S100-A11-like isoform 2 [Mus musculus].
Length = 96
Score = 55.8 bits (133), Expect = 3e-08
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M +E E +E+LI VF +SGK+G+ + F MK
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
+LD N DG++DFQE++ L+ +L +AC++ F + S
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGSLAIACHDSFIQTS 94
>ref|XP_003086436.1| PREDICTED: protein S100-A11-like isoform 1 [Mus musculus].
Length = 96
Score = 55.8 bits (133), Expect = 3e-08
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M +E E +E+LI VF +SGK+G+ + F MK
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
+LD N DG++DFQE++ L+ +L +AC++ F + S
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGSLAIACHDSFIQTS 94
>ref|NP_058020.1| protein S100-A11 [Mus musculus].
Length = 98
Score = 55.5 bits (132), Expect = 3e-08
Identities = 30/94 (31%), Positives = 47/94 (50%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M +E E +E+LI VF +SGK+G+ + F MK
Sbjct: 1 MPTETERCIESLIAVFQKYSGKDGNNTQLSKTEFLSFMNTELAAFTKNQKDPGVLDRMMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
+LD N DG++DFQE++ L+ L +AC++ F + S
Sbjct: 61 KLDLNCDGQLDFQEFLNLIGGLAIACHDSFIQTS 94
>ref|NP_033138.1| protein S100-A10 [Mus musculus].
Length = 97
Score = 55.5 bits (132), Expect = 3e-08
Identities = 33/93 (35%), Positives = 46/93 (49%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S++E AMET++ FH +G D GFL MK
Sbjct: 1 MPSQMEHAMETMMLTFHRFAG---DKDHLTKEDLRVLMEREFPGFLENQKDPLAVDKIMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWEN 387
+LD+ DG+V FQ ++ LVA LT+ACN++F N
Sbjct: 58 DLDQCRDGKVGFQSFLSLVAGLTIACNDYFVVN 90
>ref|NP_035442.1| protein S100-A5 [Mus musculus].
Length = 93
Score = 53.5 bits (127), Expect = 1e-07
Identities = 31/94 (32%), Positives = 45/94 (47%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M + LE A+ T++ FH +SG+EG S L MK
Sbjct: 1 METPLEKALTTMVTTFHKYSGREGSKLTLSRKELKELIKTELS--LAEKMKESSIDNLMK 58
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
LD+N D E+DF+EY V + L +A N+FF E++
Sbjct: 59 SLDKNSDQEIDFKEYSVFLTTLCMAYNDFFLEDN 92
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 16,131,962
Number of extensions: 359925
Number of successful extensions: 2139
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 2106
Number of HSP's successfully gapped: 11
Length of query: 215
Length of database: 15,617,559
Length adjustment: 97
Effective length of query: 118
Effective length of database: 12,704,067
Effective search space: 1499079906
Effective search space used: 1499079906
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007398
(647 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa]. 98 3e-21
Alignment gi|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa]. 67 6e-12
Alignment gi|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa]. 67 1e-11
Alignment gi|XP_003360610.1| PREDICTED: protein S100-A2-like [Sus scrofa]. 64 7e-11
Alignment gi|XP_001929591.1| PREDICTED: protein S100-A2-like isoform 1 [S... 64 7e-11
Alignment gi|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [S... 62 3e-10
Alignment gi|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [S... 62 3e-10
Alignment gi|XP_003361618.1| PREDICTED: protein S100-A10-like [Sus scrofa]. 55 4e-08
Alignment gi|XP_003355216.1| PREDICTED: protein S100-A10-like isoform 4 [... 55 4e-08
Alignment gi|XP_003355215.1| PREDICTED: protein S100-A10-like isoform 3 [... 55 4e-08
>ref|XP_003355203.1| PREDICTED: protein S100-A4-like [Sus scrofa].
Length = 94
Score = 98.2 bits (243), Expect = 3e-21
Identities = 50/94 (53%), Positives = 56/94 (59%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL MK
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGAQKDADAVDKVMK 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 390
ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
Sbjct: 61 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS 94
>ref|XP_003362027.1| PREDICTED: protein S100-B-like [Sus scrofa].
Length = 92
Score = 67.4 bits (163), Expect = 6e-12
Identities = 36/88 (40%), Positives = 46/88 (52%)
Frame = +1
Query: 115 SELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMKEL 294
SELE A+ LI+VFH +SG+EGD S FL M+ L
Sbjct: 2 SELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINSELSHFLEEIKEQEVVDKVMETL 61
Query: 295 DENGDGEVDFQEYVVLVAALTVACNNFF 378
D +GDGE DFQE++ VA +T AC+ FF
Sbjct: 62 DSDGDGECDFQEFMAFVAMVTTACHEFF 89
>ref|XP_003123762.1| PREDICTED: protein S100-Z-like [Sus scrofa].
Length = 99
Score = 66.6 bits (161), Expect = 1e-11
Identities = 37/92 (40%), Positives = 49/92 (53%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M ++LE AM+ +I F +S KEGD + FL M+
Sbjct: 1 MPTQLEIAMDIMIRTFPRYSCKEGDRFKLNKGELKMLLQRELTDFLSCQKDPELVDKIMQ 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFFWE 384
+LD N D EVDF E+VV+VAALTVACN++F E
Sbjct: 61 DLDANKDNEVDFNEFVVMVAALTVACNDYFVE 92
>ref|XP_003360610.1| PREDICTED: protein S100-A2-like [Sus scrofa].
Length = 97
Score = 63.9 bits (154), Expect = 7e-11
Identities = 32/90 (35%), Positives = 44/90 (48%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S LE A+ ++ FH +SG+EGD F+ M
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFF 90
>ref|XP_001929591.1| PREDICTED: protein S100-A2-like isoform 1 [Sus scrofa].
Length = 97
Score = 63.9 bits (154), Expect = 7e-11
Identities = 32/90 (35%), Positives = 44/90 (48%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S LE A+ ++ FH +SG+EGD F+ M
Sbjct: 1 MSSPLEQALAVMVATFHKYSGQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMG 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LDEN D +VDFQEY V +A +T+ CN+FF
Sbjct: 61 DLDENSDQQVDFQEYAVFLALITIMCNDFF 90
>ref|XP_001929598.1| PREDICTED: protein S100-A4-like isoform 2 [Sus scrofa].
Length = 101
Score = 61.6 bits (148), Expect = 3e-10
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL M
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LD N D EVDFQEY V ++ + + CN FF
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>ref|XP_001929595.1| PREDICTED: protein S100-A4-like isoform 1 [Sus scrofa].
Length = 101
Score = 61.6 bits (148), Expect = 3e-10
Identities = 31/90 (34%), Positives = 41/90 (45%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M LE A++ +++ FH +SGKEGD FL M
Sbjct: 1 MAYPLEKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMS 60
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
LD N D EVDFQEY V ++ + + CN FF
Sbjct: 61 NLDSNRDNEVDFQEYCVFLSCIAMMCNEFF 90
>ref|XP_003361618.1| PREDICTED: protein S100-A10-like [Sus scrofa].
Length = 97
Score = 54.7 bits (130), Expect = 4e-08
Identities = 31/90 (34%), Positives = 45/90 (50%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S++E AMET++ FH +G +G GFL MK
Sbjct: 1 MPSQMEHAMETMMFTFHKFAGDKG---YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LD+ DG+V FQ + L+A LT+ACN++F
Sbjct: 58 DLDQCRDGKVGFQSFFSLIAGLTIACNDYF 87
>ref|XP_003355216.1| PREDICTED: protein S100-A10-like isoform 4 [Sus scrofa].
Length = 97
Score = 54.7 bits (130), Expect = 4e-08
Identities = 31/90 (34%), Positives = 45/90 (50%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S++E AMET++ FH +G +G GFL MK
Sbjct: 1 MPSQMEHAMETMMFTFHKFAGDKG---YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LD+ DG+V FQ + L+A LT+ACN++F
Sbjct: 58 DLDQCRDGKVGFQSFFSLIAGLTIACNDYF 87
>ref|XP_003355215.1| PREDICTED: protein S100-A10-like isoform 3 [Sus scrofa].
Length = 97
Score = 54.7 bits (130), Expect = 4e-08
Identities = 31/90 (34%), Positives = 45/90 (50%)
Frame = +1
Query: 109 MGSELETAMETLINVFHAHSGKEGDXXXXXXXXXXXXXXXXXSGFLXXXXXXXXXXXXMK 288
M S++E AMET++ FH +G +G GFL MK
Sbjct: 1 MPSQMEHAMETMMFTFHKFAGDKG---YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK 57
Query: 289 ELDENGDGEVDFQEYVVLVAALTVACNNFF 378
+LD+ DG+V FQ + L+A LT+ACN++F
Sbjct: 58 DLDQCRDGKVGFQSFFSLIAGLTIACNDYF 87
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 12,831,094
Number of extensions: 403206
Number of successful extensions: 1931
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 1901
Number of HSP's successfully gapped: 16
Length of query: 215
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 120
Effective length of database: 8,978,717
Effective search space: 1077446040
Effective search space used: 1077446040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007398
(647 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 654 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 654 bits (330), Expect = 0.0
Identities = 330/330 (100%)
Strand = Plus / Minus
Query: 250 gcccagaaggatgcggatgctgtggacaaggtgatgaaggagctcgacgagaatggagat 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104900536 gcccagaaggatgcggatgctgtggacaaggtgatgaaggagctcgacgagaatggagat 104900477
Query: 310 ggggaggtggacttccaggagtacgtggtgctggtggctgccctcacagtggcctgtaac 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104900476 ggggaggtggacttccaggagtacgtggtgctggtggctgccctcacagtggcctgtaac 104900417
Query: 370 aacttcttctgggagaacagttgagcagatggtcccattgggcagcgcccttcccctcca 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104900416 aacttcttctgggagaacagttgagcagatggtcccattgggcagcgcccttcccctcca 104900357
Query: 430 ccctgccatacctgcctcttcaccctgcttccccttcatcccgctgttccctccccacct 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104900356 ccctgccatacctgcctcttcaccctgcttccccttcatcccgctgttccctccccacct 104900297
Query: 490 tctcacccttgcctaccctccaacaggggcgcaagagtagtgggccaggcctgcaactca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104900296 tctcacccttgcctaccctccaacaggggcgcaagagtagtgggccaggcctgcaactca 104900237
Query: 550 tctttcattaaaggctcctctctcaccagc 579
||||||||||||||||||||||||||||||
Sbjct: 104900236 tctttcattaaaggctcctctctcaccagc 104900207
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 16,037,393
Number of extensions: 459
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 626
Effective length of database: 2,808,413,156
Effective search space: 1758066635656
Effective search space used: 1758066635656
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)