Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007401
(1291 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039528.1| serpin H1 precursor [Bos taurus]. 471 e-133
Alignment gi|NP_001193539.1| leukocyte elastase inhibitor [Bos taurus]. 94 3e-19
Alignment gi|NP_001030364.1| serpin B8 [Bos taurus]. 89 6e-18
Alignment gi|NP_001033293.1| serpin A3-3 [Bos taurus]. 88 1e-17
Alignment gi|XP_001254729.1| PREDICTED: serpin peptidase inhibitor, clade... 85 2e-17
Alignment gi|XP_001250959.1| PREDICTED: serpin peptidase inhibitor, clade... 85 2e-17
Alignment gi|XP_001254421.1| PREDICTED: serpin peptidase inhibitor, clade... 85 2e-17
Alignment gi|NP_001070985.1| serpin A12 [Bos taurus]. 87 3e-17
Alignment gi|NP_001075213.1| serpin A3-5 [Bos taurus]. 86 5e-17
Alignment gi|XP_001252670.1| PREDICTED: endopin 1b-like isoform 1 [Bos ta... 86 5e-17
>ref|NP_001039528.1| serpin H1 precursor [Bos taurus].
Length = 418
Score = 471 bits (1211), Expect = e-133
Identities = 251/310 (80%), Positives = 260/310 (83%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
SPKAATLAERSAGLAFSLYQAMAKDQAVENI KAATASQAKAV
Sbjct: 37 SPKAATLAERSAGLAFSLYQAMAKDQAVENILLSPVVVASSLGLVSLGGKAATASQAKAV 96
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAEQLRD+EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC
Sbjct: 97 LSAEQLRDDEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 156
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH
Sbjct: 157 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 216
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQ+VEMPLAHKLSSLIIIMPHHVE
Sbjct: 217 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQMVEMPLAHKLSSLIIIMPHHVE 276
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK + G+ KK + + L K L G + +NKAD
Sbjct: 277 PLERLEKLLTKEQLKVWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 336
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 337 LSRMSGKKDL 346
>ref|NP_001193539.1| leukocyte elastase inhibitor [Bos taurus].
Length = 377
Score = 93.6 bits (231), Expect = 3e-19
Identities = 84/316 (26%), Positives = 145/316 (45%), Gaps = 13/316 (4%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+ + A L+ + + NI + TA+Q L E +
Sbjct: 4 LSAANTRFAVDLFLTLTEHNPAGNIFISPFSISSALAMVFLGARGDTAAQMSKALHFEGV 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
E+H+G L + N T KL +RL+G S F +F+ S+++ Y+ E + ++
Sbjct: 64 ---EIHSGFQSLNADI-NKCGAPYTLKLANRLFGEKSYDFLPEFLASTQEMYSAELASVD 119
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEVTKD--VERTDGALLVNAMFFKPHWDERFHHKMV 890
F R A ++IN W + T GK+PE+ V+ +LVNA++FK W E+F +
Sbjct: 120 FLRAPEDARKTINAWVKEQTGGKIPELLASGMVDSLTKLVLVNAIYFKGKWQEKFMVEAT 179
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEP-- 1064
+ F + + T V MM++ + + + K +++E+P K S++I++P ++
Sbjct: 180 KDAPFRLNKKETKTVKMMYQKKKFPFGYIKDLKCRVLELPYEGKDLSMVILLPDDIQDEA 239
Query: 1065 --LERLEKLLTKSS*RSGWGRCK-----KGRCHFPGQRC-GGIDP*LAKTLGRPGSD*SH 1220
L+++E+ LT R W R + + R P + D L + L R G
Sbjct: 240 TGLKKIEQQLTLEKLRE-WTRPESLDLLEVRVQLPRFKLEESYD--LQEPLARLGVR-DL 295
Query: 1221 QQNKADLSRMSGKKNL 1268
+KADLS MSG K+L
Sbjct: 296 FSSKADLSGMSGAKDL 311
>ref|NP_001030364.1| serpin B8 [Bos taurus].
Length = 374
Score = 89.4 bits (220), Expect = 6e-18
Identities = 81/311 (26%), Positives = 132/311 (42%), Gaps = 8/311 (2%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A +L + + ++ + N+ K TA+Q L +
Sbjct: 4 LCEANGTFAINLLKMLGEEDHLRNVFFSPLSLSSVLTMVLMGAKGNTAAQMSQALCLNES 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
D VH G LLR +S S + + + +RL+G + F F S ++ Y + +++
Sbjct: 64 GD--VHRGFQSLLREVSTSGPKCLL-RTANRLFGEKTCDFLPAFKESCQKFYQADLEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F D + IN+W + TDGK+ E+ V +LVNA++FK W+E+F K
Sbjct: 121 FAEDTEECRKHINDWVMEKTDGKISEILGAGTVSPLTKLVLVNAIYFKGKWNEQFDRKHT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLE 1070
F T V MM + + E+ Q++E+P S++I++P L
Sbjct: 181 RGMPFK-TNQEKKTVQMMFKQAKFKMGHVEEVPAQVLELPYVGAELSMLILLPDENTDLA 239
Query: 1071 RLEKLLTKSS*RSGWGRCK----KGRCHFPGQRC-GGIDP*LAKTLGRPGSD*SHQQNKA 1235
+EK LT R+ K K + P + D L L G + ++ KA
Sbjct: 240 VVEKALTYEKFRTWTSPEKLTEEKVQVFLPRLKLEASYD--LEAFLRSLGMTDAFEEAKA 297
Query: 1236 DLSRMSGKKNL 1268
D S MS KKN+
Sbjct: 298 DFSGMSAKKNV 308
>ref|NP_001033293.1| serpin A3-3 [Bos taurus].
Length = 411
Score = 88.2 bits (217), Expect = 1e-17
Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 2/231 (0%)
Frame = +3
Query: 357 TLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL--SA 530
TLA + AFSLY+ +A +N+ + T ++ L +
Sbjct: 42 TLASSNTDFAFSLYKQLALKNPNKNVMFSPLSVSMALAFLSLGARGPTLTEILEGLKFNL 101
Query: 531 EQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHS 710
++++ ++H G LL++L N + +G+ ++ + + F+ ++ Y+ E
Sbjct: 102 TEIQETQIHQGFQHLLQAL-NRPRNQLQLSVGNAMFVQEELKLLDKFIEDARVLYSSEAF 160
Query: 711 KINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
NFRD +A IN++ T GK+ E+ KD+ +LVN ++FK W RF K
Sbjct: 161 PTNFRDPEAAKSLINDYVKNKTQGKIEELFKDLSPRTELVLVNYVYFKAQWKTRFDPKHT 220
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
+ F V+ + TV V MM Y+ DE+ +VE+ S+L I+
Sbjct: 221 EQAEFHVSDNKTVEVPMMTLDLETPYFRDEELGCTLVELTYTSNDSALFIL 271
>ref|XP_001254729.1| PREDICTED: serpin peptidase inhibitor, clade B like [Bos taurus].
Length = 391
Score = 84.7 bits (208), Expect(2) = 2e-17
Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 17/263 (6%)
Frame = +3
Query: 354 ATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAE 533
++L+E LA L+ + K + ENI + TASQ + VL
Sbjct: 2 SSLSEAIIHLAIDLFHQIRKSEK-ENIFLSPFSISSALAMTYLGARENTASQMQKVLHFN 60
Query: 534 QLRDE--------------EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDF 671
+ + VH +LL L ST + +RLYG F +++
Sbjct: 61 NIAENTRGGAAKEHVEKPGNVHHHFQKLLTELKKSTDA-YELSVANRLYGEKEFQFLQEY 119
Query: 672 VRSSKQHYNCEHSKINFRDK-RSALQSINEWAAQTTDGKLPEV-TKDVERTDGAL-LVNA 842
+ + K+ Y +F++ + + IN W T+GK+ ++ KD ++ AL LVNA
Sbjct: 120 LDNVKKFYLASVESADFKNAAEESRKMINSWVESQTNGKIKDLFPKDSLKSSTALVLVNA 179
Query: 843 MFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHK 1022
++FK W+++F + F + + + V MM +T + + E + +I+E+P +
Sbjct: 180 VYFKGQWNQKFKEEHTAEEKFWLNKDTSKPVRMMKQTNSFKFVSLEDVQAKILEIPYKGE 239
Query: 1023 LSSLIIIMPHHVEPLERLEKLLT 1091
S+++++P+ V+ L+ LE LT
Sbjct: 240 ELSMMVLLPNEVDGLQELEDQLT 262
Score = 23.5 bits (49), Expect(2) = 2e-17
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 1126 KKAVAISLAKGVVELTHDLQKHLAGLGLTEAIN 1224
K+ V + L + VE ++DL L LG+ +A N
Sbjct: 277 KREVDLYLPRFKVEESYDLVPTLKALGMVDAFN 309
>ref|XP_001250959.1| PREDICTED: serpin peptidase inhibitor, clade B like isoform 1 [Bos
taurus].
Length = 391
Score = 84.7 bits (208), Expect(2) = 2e-17
Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 17/263 (6%)
Frame = +3
Query: 354 ATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAE 533
++L+E LA L+ + K + ENI + TASQ + VL
Sbjct: 2 SSLSEAIIHLAIDLFHQIRKSEK-ENIFLSPFSISSALAMTYLGARENTASQMQKVLHFN 60
Query: 534 QLRDE--------------EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDF 671
+ + VH +LL L ST + +RLYG F +++
Sbjct: 61 NIAENTRGGAAKEHVEKPGNVHHHFQKLLTELKKSTDA-YELSVANRLYGEKEFQFLQEY 119
Query: 672 VRSSKQHYNCEHSKINFRDK-RSALQSINEWAAQTTDGKLPEV-TKDVERTDGAL-LVNA 842
+ + K+ Y +F++ + + IN W T+GK+ ++ KD ++ AL LVNA
Sbjct: 120 LDNVKKFYLASVESADFKNAAEESRKMINSWVESQTNGKIKDLFPKDSLKSSTALVLVNA 179
Query: 843 MFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHK 1022
++FK W+++F + F + + + V MM +T + + E + +I+E+P +
Sbjct: 180 VYFKGQWNQKFKEEHTAEEKFWLNKDTSKPVRMMKQTNSFKFVSLEDVQAKILEIPYKGE 239
Query: 1023 LSSLIIIMPHHVEPLERLEKLLT 1091
S+++++P+ V+ L+ LE LT
Sbjct: 240 ELSMMVLLPNEVDGLQELEDQLT 262
Score = 23.5 bits (49), Expect(2) = 2e-17
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 1126 KKAVAISLAKGVVELTHDLQKHLAGLGLTEAIN 1224
K+ V + L + VE ++DL L LG+ +A N
Sbjct: 277 KREVDLYLPRFKVEESYDLVPTLKALGMVDAFN 309
>ref|XP_001254421.1| PREDICTED: serpin peptidase inhibitor, clade B like [Bos taurus].
Length = 391
Score = 84.7 bits (208), Expect(2) = 2e-17
Identities = 65/263 (24%), Positives = 120/263 (45%), Gaps = 17/263 (6%)
Frame = +3
Query: 354 ATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAE 533
++L+E LA L+ + K + ENI + TASQ + VL
Sbjct: 2 SSLSEAIIHLAIDLFHQIRKSEK-ENIFLSPFSISSALAMTYLGARENTASQMQKVLHFN 60
Query: 534 QLRDE--------------EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDF 671
+ + VH +LL L ST + +RLYG F +++
Sbjct: 61 NIAENTRGGAAKEHVEKPGNVHHHFQKLLTELKKSTDA-YELSVANRLYGEKEFQFLQEY 119
Query: 672 VRSSKQHYNCEHSKINFRDK-RSALQSINEWAAQTTDGKLPEV-TKDVERTDGAL-LVNA 842
+ + K+ Y +F++ + + IN W T+GK+ ++ KD ++ AL LVNA
Sbjct: 120 LDNVKKFYLASVESADFKNAAEESRKMINSWVESQTNGKIKDLFPKDSLKSSTALVLVNA 179
Query: 843 MFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHK 1022
++FK W+++F + F + + + V MM +T + + E + +I+E+P +
Sbjct: 180 VYFKGQWNQKFKEEHTAEEKFWLNKDTSKPVRMMKQTNSFKFVSLEDVQAKILEIPYKGE 239
Query: 1023 LSSLIIIMPHHVEPLERLEKLLT 1091
S+++++P+ V+ L+ LE LT
Sbjct: 240 ELSMMVLLPNEVDGLQELEDQLT 262
Score = 23.5 bits (49), Expect(2) = 2e-17
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 1126 KKAVAISLAKGVVELTHDLQKHLAGLGLTEAIN 1224
K+ V + L + VE ++DL L LG+ +A N
Sbjct: 277 KREVDLYLPRFKVEESYDLVPTLKALGMVDAFN 309
>ref|NP_001070985.1| serpin A12 [Bos taurus].
Length = 414
Score = 87.0 bits (214), Expect = 3e-17
Identities = 52/231 (22%), Positives = 103/231 (44%)
Frame = +3
Query: 351 AATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSA 530
A LA+R+A L++ ++ NI + +T ++ K +
Sbjct: 45 AQELAKRNADFGLKLFKKLSFSSPDNNILFSPWSISMAFSMLSLGAQDSTLAEIKEGFNF 104
Query: 531 EQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHS 710
+ ++++H L+ L N ++ LG+ L+ V + F+ + Y +
Sbjct: 105 RNIPEKDLHEAFHYLIHRL-NQRNQDQRLGLGNALFIDQKVKPKQKFLTEVRNMYKADTI 163
Query: 711 KINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
NFR+ +A + IN + +Q T GK+ + K+++ LL+N +FF+ W F K
Sbjct: 164 PTNFRNSENAQKQINNYVSQKTQGKINNLVKNIDPGTVMLLINYIFFRARWQHEFDPKET 223
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
F++ R+ TV V MM G+Y D++ I+E+P +++ ++
Sbjct: 224 KEEDFILDRNKTVKVPMMFHVGMYKVGHDDQLSCTILEIPYQSNFTAIFVL 274
>ref|NP_001075213.1| serpin A3-5 [Bos taurus].
Length = 411
Score = 86.3 bits (212), Expect = 5e-17
Identities = 57/231 (24%), Positives = 107/231 (46%), Gaps = 2/231 (0%)
Frame = +3
Query: 357 TLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL--SA 530
TLA + AFSLY+ +A +N+ + T ++ L +
Sbjct: 42 TLASSNTDFAFSLYKQLALKNPNKNVMFSPLSVSMALAFLSLGARGPTLTEILEGLKFNL 101
Query: 531 EQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHS 710
++++ ++H G LL++L N + + +G+ ++ + + F+ ++ Y+ E
Sbjct: 102 TEIQETQIHQGFQHLLQAL-NRPSNQLQLSVGNAMFVQEELKLLDKFIEDARVLYSSEAF 160
Query: 711 KINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
NFRD +A IN++ T GK+ E+ K + +LVN ++FK W RF K
Sbjct: 161 PTNFRDSEAARSLINDYVKNKTQGKIEELFKYLSPRTVLVLVNYIYFKAQWKTRFDPKHT 220
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
+ F V+++ TV V MM Y+ D++ +VE+ + S+L I+
Sbjct: 221 EQAEFHVSKNKTVEVPMMTLDLETPYFRDKELGCMLVELTYSSNDSALFIL 271
>ref|XP_001252670.1| PREDICTED: endopin 1b-like isoform 1 [Bos taurus].
Length = 299
Score = 86.3 bits (212), Expect = 5e-17
Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 2/231 (0%)
Frame = +3
Query: 357 TLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL--SA 530
TLA + AFSLY+ +A +N+ + T ++ L +
Sbjct: 42 TLASSNTDFAFSLYKQLALKNPNKNVMFSPLSVSMALAFLSLGARGPTLTEILEGLKFNL 101
Query: 531 EQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHS 710
++++ ++H G LL++L N + + +G+ ++ + + F+ ++ Y+ E
Sbjct: 102 TEIQETQIHQGFQHLLQAL-NRPSNQLQLSVGNAMFVQEELKLLDKFIEDARVLYSSEAF 160
Query: 711 KINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
NF D +A IN++ + T GK+ E+ KD+ +LVN ++FK W RF K
Sbjct: 161 PTNFGDPEAAKSLINDYVKKKTQGKIEELFKDLSPRTVLVLVNYIYFKAQWKTRFDPKHT 220
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
+ F V+ + TV V MM Y+ DE+ +VE+ S+L I+
Sbjct: 221 EQAEFHVSDNKTVEVPMMTLDLETPYFRDEELGCTLVELTYTSNDSALFIL 271
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,075,376
Number of extensions: 949771
Number of successful extensions: 4091
Number of sequences better than 1.0e-05: 79
Number of HSP's gapped: 4017
Number of HSP's successfully gapped: 99
Length of query: 430
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,207,134
Effective search space: 4617318550
Effective search space used: 4617318550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007401
(1291 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001159360.1| serpin H1 [Canis lupus familiaris]. 469 e-132
Alignment gi|XP_537545.1| PREDICTED: similar to serine (or cysteine) prot... 98 2e-20
Alignment gi|XP_856912.1| PREDICTED: similar to serine (or cysteine) prot... 94 2e-19
Alignment gi|XP_856871.1| PREDICTED: similar to serine (or cysteine) prot... 91 2e-18
Alignment gi|XP_848751.1| PREDICTED: similar to serine (or cysteine) prot... 89 9e-18
Alignment gi|XP_545314.2| PREDICTED: similar to Cytoplasmic antiproteinas... 88 2e-17
Alignment gi|XP_855782.1| PREDICTED: similar to Cytoplasmic antiproteinas... 88 2e-17
Alignment gi|XP_541071.2| PREDICTED: similar to Serpin B10 (Bomapin) (Pro... 87 5e-17
Alignment gi|XP_545313.2| PREDICTED: similar to serine (or cysteine) prot... 86 8e-17
Alignment gi|XP_856828.1| PREDICTED: similar to serine (or cysteine) prot... 85 1e-16
>ref|NP_001159360.1| serpin H1 [Canis lupus familiaris].
Length = 418
Score = 469 bits (1208), Expect = e-132
Identities = 250/310 (80%), Positives = 259/310 (83%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
SPKAATLAERSAGLAFSLYQAMAKDQAVENI KA TASQAKAV
Sbjct: 37 SPKAATLAERSAGLAFSLYQAMAKDQAVENILLSPVVVASSLGLVSLGGKATTASQAKAV 96
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC
Sbjct: 97 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 156
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDE+FHH
Sbjct: 157 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHH 216
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLII+MPHHVE
Sbjct: 217 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIILMPHHVE 276
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK + G+ KK + + L K L G + +NKAD
Sbjct: 277 PLERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 336
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 337 LSRMSGKKDL 346
>ref|XP_537545.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade A (alpha-1 antiproteinase, antitrypsin), member 5
[Canis familiaris].
Length = 407
Score = 97.8 bits (242), Expect = 2e-20
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 2/235 (0%)
Frame = +3
Query: 345 PKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL 524
P A+T+A S AF LY+A+A +NI ++T Q L
Sbjct: 35 PVASTVAPASRDFAFDLYRALATAAPDQNIFFSPLSISTTLAMLSLGAGSSTKVQILEGL 94
Query: 525 SA--EQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYN 698
++ +E +H + +LL + ++ LG+ L+ +V + F+++ K Y
Sbjct: 95 GLHPQEGLEEALHRRIHQLLWDFAQPR-EDIQLSLGNALFISPTVRLQDTFLQAVKMLYL 153
Query: 699 CEHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFH 878
+ NF D A + IN++ A+ T GK+ ++ KD++ T+ ++VN +FFK W+ F+
Sbjct: 154 ADTFPTNFGDPAGAQKQINDYVAKQTKGKIVDLAKDLDSTEAMVMVNYIFFKAKWETGFN 213
Query: 879 HKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
HK + F VT V V MM + Y YY D ++V +P ++L ++
Sbjct: 214 HKSTRKQDFHVTSEMVVQVPMMKQEDHYYYYVDRNLSCRVVGVPYRGNATALFVL 268
>ref|XP_856912.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade B (ovalbumin), member 8 isoform a isoform 4 [Canis
familiaris].
Length = 378
Score = 94.4 bits (233), Expect = 2e-19
Identities = 83/315 (26%), Positives = 139/315 (44%), Gaps = 12/315 (3%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A +L + + ++ + N+ K TA+Q VL A L
Sbjct: 4 LYEANGSFAINLLKMLGREDSSRNVFCSPLSISSALAMVFMGAKGNTAAQMSQVLVANTL 63
Query: 540 -RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKI 716
+D ++H G LL ++ S + + + +RL+G + F + S ++ Y E ++
Sbjct: 64 GKDGDIHQGFRSLLAEVNKSGTQYLL-RTANRLFGEETCDFLPAYRESCQKFYQAELEEL 122
Query: 717 NF-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKM 887
+F +D + IN W + T+GK+ E+ V+ +LVNA++FK W E+F K
Sbjct: 123 SFAKDTEECREHINHWVTEKTEGKISEILGAGTVDALTKLVLVNAIYFKGKWHEQFDRKN 182
Query: 888 VDNRGFMVTRSYTVGVTMMHRTGLY--NYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
F + + V MM + + Y DD QI+E+P A + S++I++P
Sbjct: 183 TRGMPFKINQVGKKTVQMMFKQAKFKMGYVDD--VHTQILELPYAGEELSMVILLPDDNT 240
Query: 1062 PLERLEKLLTKSS*RSGWG-----RCKKGRCHFPGQRC-GGIDP*LAKTLGRPGSD*SHQ 1223
L +EK LT R+ W K + P + D L L G + +
Sbjct: 241 DLAEVEKALTYEKFRA-WTDPENMTKNKVQVFLPRLKLEESYD--LESFLRSVGMIDAFE 297
Query: 1224 QNKADLSRMSGKKNL 1268
+ KAD S MS KKN+
Sbjct: 298 EAKADFSGMSAKKNV 312
>ref|XP_856871.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade B (ovalbumin), member 8 isoform a isoform 3 [Canis
familiaris].
Length = 379
Score = 91.3 bits (225), Expect = 2e-18
Identities = 81/316 (25%), Positives = 137/316 (43%), Gaps = 13/316 (4%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAE-- 533
L E + A +L + + ++ + N+ K TA+Q V S +
Sbjct: 4 LYEANGSFAINLLKMLGREDSSRNVFCSPLSISSALAMVFMGAKGNTAAQMSQVFSVDFC 63
Query: 534 QLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSK 713
D ++H G LL ++ S + + + +RL+G + F + S ++ Y E +
Sbjct: 64 SFLDGDIHQGFRSLLAEVNKSGTQYLL-RTANRLFGEETCDFLPAYRESCQKFYQAELEE 122
Query: 714 INF-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHK 884
++F +D + IN W + T+GK+ E+ V+ +LVNA++FK W E+F K
Sbjct: 123 LSFAKDTEECREHINHWVTEKTEGKISEILGAGTVDALTKLVLVNAIYFKGKWHEQFDRK 182
Query: 885 MVDNRGFMVTRSYTVGVTMMHRTGLY--NYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHV 1058
F + + V MM + + Y DD QI+E+P A + S++I++P
Sbjct: 183 NTRGMPFKINQVGKKTVQMMFKQAKFKMGYVDD--VHTQILELPYAGEELSMVILLPDDN 240
Query: 1059 EPLERLEKLLTKSS*RSGWG-----RCKKGRCHFPGQRC-GGIDP*LAKTLGRPGSD*SH 1220
L +EK LT R+ W K + P + D L L G +
Sbjct: 241 TDLAEVEKALTYEKFRA-WTDPENMTKNKVQVFLPRLKLEESYD--LESFLRSVGMIDAF 297
Query: 1221 QQNKADLSRMSGKKNL 1268
++ KAD S MS KKN+
Sbjct: 298 EEAKADFSGMSAKKNV 313
>ref|XP_848751.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade B (ovalbumin), member 8 isoform a isoform 1 [Canis
familiaris].
Length = 374
Score = 89.0 bits (219), Expect = 9e-18
Identities = 81/314 (25%), Positives = 136/314 (43%), Gaps = 11/314 (3%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A +L + + ++ + N+ K TA+Q L
Sbjct: 4 LYEANGSFAINLLKMLGREDSSRNVFCSPLSISSALAMVFMGAKGNTAAQMSQALCLS-- 61
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
RD ++H G LL ++ S + + + +RL+G + F + S ++ Y E +++
Sbjct: 62 RDGDIHQGFRSLLAEVNKSGTQYLL-RTANRLFGEETCDFLPAYRESCQKFYQAELEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F +D + IN W + T+GK+ E+ V+ +LVNA++FK W E+F K
Sbjct: 121 FAKDTEECREHINHWVTEKTEGKISEILGAGTVDALTKLVLVNAIYFKGKWHEQFDRKNT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLY--NYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEP 1064
F + + V MM + + Y DD QI+E+P A + S++I++P
Sbjct: 181 RGMPFKINQERKT-VQMMFKQAKFKMGYVDD--VHTQILELPYAGEELSMVILLPDDNTD 237
Query: 1065 LERLEKLLTKSS*RSGWG-----RCKKGRCHFPGQRC-GGIDP*LAKTLGRPGSD*SHQQ 1226
L +EK LT R+ W K + P + D L L G + ++
Sbjct: 238 LAEVEKALTYEKFRA-WTDPENMTKNKVQVFLPRLKLEESYD--LESFLRSVGMIDAFEE 294
Query: 1227 NKADLSRMSGKKNL 1268
KAD S MS KKN+
Sbjct: 295 AKADFSGMSAKKNV 308
>ref|XP_545314.2| PREDICTED: similar to Cytoplasmic antiproteinase 3 (CAP3) (CAP-3)
(Protease inhibitor 9) (Serpin B9) isoform 1 [Canis
familiaris].
Length = 376
Score = 88.2 bits (217), Expect = 2e-17
Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 9/309 (2%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+E + A L + + +D N+ K TA+Q VLS
Sbjct: 4 LSEANGTFAIRLLKMLCQDDPSRNVFYSPVIISSALAMVYLGAKGNTAAQVTEVLSLSTE 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
+D +H LL + N + +RL+G + F F S + Y+ E ++
Sbjct: 64 KD--IHQSFQSLLAEV-NKPGTQYLLRTANRLFGEKTCEFLPTFKESCVRFYSAELEQLP 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKMV 890
F + + + IN W ++ T+GK+ E+ ++ +LVNA++FK W+E+F +
Sbjct: 121 FAKAAEPSRKHINAWVSEKTEGKIQELLPGGSIDAKTRLVLVNAIYFKGRWNEQFDKRYT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMP-LAHKLSSLIIIMPHHVEPL 1067
F + + V MM++ + E+ + Q++E+P + +LS LI++ HVE L
Sbjct: 181 REMPFRINQKEQRPVQMMYQEATFKLAYIEELQTQVLELPYVGDELSMLILLPDDHVE-L 239
Query: 1068 ERLEKLLTKSS*RSGWGR--CKKG---RCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNK 1232
+E LT R+ W R C + P + G + LA LG G + Q +K
Sbjct: 240 SSVESHLTWERFRA-WTRPACMRSTDVEVFLPRLQLGE-EYDLAAVLGPLGMADAFQGDK 297
Query: 1233 ADLSRMSGK 1259
AD S MS +
Sbjct: 298 ADFSAMSAR 306
>ref|XP_855782.1| PREDICTED: similar to Cytoplasmic antiproteinase 3 (CAP3) (CAP-3)
(Protease inhibitor 9) (Serpin B9) isoform 4 [Canis
familiaris].
Length = 376
Score = 87.8 bits (216), Expect = 2e-17
Identities = 80/309 (25%), Positives = 136/309 (44%), Gaps = 9/309 (2%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+E + A L + + +D N+ K TA+Q VLS
Sbjct: 4 LSEANGTFAIRLLKMLCQDDPSRNVFYSPVIISSALAMVYLGAKGNTAAQVCVVLSLSTE 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
+D +H LL + N + +RL+G + F F S + Y+ E ++
Sbjct: 64 KD--IHQSFQSLLAEV-NKPGTQYLLRTANRLFGEKTCEFLPTFKESCVRFYSAELEQLP 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKMV 890
F + + + IN W ++ T+GK+ E+ ++ +LVNA++FK W+E+F +
Sbjct: 121 FAKAAEPSRKHINAWVSEKTEGKIQELLPGGSIDAKTRLVLVNAIYFKGRWNEQFDKRYT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMP-LAHKLSSLIIIMPHHVEPL 1067
F + + V MM++ + E+ + Q++E+P + +LS LI++ HVE L
Sbjct: 181 REMPFRINQKEQRPVQMMYQEATFKLAYIEELQTQVLELPYVGDELSMLILLPDDHVE-L 239
Query: 1068 ERLEKLLTKSS*RSGWGR--CKKG---RCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNK 1232
+E LT R+ W R C + P + G + LA LG G + Q +K
Sbjct: 240 SSVESHLTWERFRA-WTRPACMRSTDVEVFLPRLQLGE-EYDLAAVLGPLGMADAFQGDK 297
Query: 1233 ADLSRMSGK 1259
AD S MS +
Sbjct: 298 ADFSAMSAR 306
>ref|XP_541071.2| PREDICTED: similar to Serpin B10 (Bomapin) (Protease inhibitor 10)
[Canis familiaris].
Length = 397
Score = 86.7 bits (213), Expect = 5e-17
Identities = 76/278 (27%), Positives = 123/278 (44%), Gaps = 18/278 (6%)
Frame = +3
Query: 489 KAATASQAKAVLSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAED 668
K+ S+ K + + EE+H+ L+ ++N + V K +RLYG + F
Sbjct: 67 KSCPESEKKRKMEFGLGKVEEIHSHFQTLISEINNPSTSYVL-KTANRLYGEKTYPFHTK 125
Query: 669 FVRSSKQHYNCEHSKINFRDKRSALQS-INEWAAQTTDGKLPEVTKD--VERTDGALLVN 839
++ K ++ E +NF ++ IN W T+GK+P + D V+ +LVN
Sbjct: 126 YLEDMKAYFGAEPQSVNFVGASGQIRKEINSWVESQTEGKIPNLLPDDAVDSATRMVLVN 185
Query: 840 AMFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQI--VEMPL 1013
A++FK W+ +F + + F + +S + V MM KEKLQI +E P
Sbjct: 186 ALYFKGIWEHQFSVQDTTEKPFRINKSTSKPVLMM----------SMKEKLQIFHIEKPQ 235
Query: 1014 AHKLS--------SLIIIMPHHVEPLERLEKLLTKSS*RSGWGRCK-----KGRCHFPGQ 1154
A L SL++++P V+ L++LE+ +T S W + H P
Sbjct: 236 AIGLQLYYDSHDLSLLVLLPEDVDGLDQLERAITYEK-LSEWTSADMMELYEVELHLPKF 294
Query: 1155 RCGGIDP*LAKTLGRPGSD*SHQQNKADLSRMSGKKNL 1268
R L +L G + Q KAD S MS + NL
Sbjct: 295 RLEETYD-LKSSLRSMGMSDAFNQGKADFSGMSMEGNL 331
>ref|XP_545313.2| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade B (ovalbumin), member 1 [Canis familiaris].
Length = 382
Score = 85.9 bits (211), Expect = 8e-17
Identities = 52/190 (27%), Positives = 102/190 (53%), Gaps = 7/190 (3%)
Frame = +3
Query: 543 DEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINF 722
D E+H+ L ++ A + KL +RLYG + +F +F+ S+++ Y E + ++F
Sbjct: 67 DGEIHSRFQSLNADINKRGASYIL-KLANRLYGEKTYNFLPEFLASTQKMYGAELASVDF 125
Query: 723 RD-KRSALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKMVD 893
+ A ++IN+W T+GK+PE+ V+ +LVNA++FK W++ F K
Sbjct: 126 QQASEEARKAINKWVKGQTEGKIPELLAAGTVDSMTKLVLVNAIYFKGSWEDEFSKKDTA 185
Query: 894 NRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEP--- 1064
+ F + + V MM++ + + E K +++E+P + S++I++P +E
Sbjct: 186 DAPFRLNKKDKKTVKMMYKKKKFPFGYIEDLKCRVLELPYRGRELSMLILLPDDIEDEST 245
Query: 1065 -LERLEKLLT 1091
L+++E+ LT
Sbjct: 246 GLKKIEEHLT 255
>ref|XP_856828.1| PREDICTED: similar to serine (or cysteine) proteinase inhibitor,
clade B (ovalbumin), member 8 isoform a isoform 2 [Canis
familiaris].
Length = 382
Score = 85.1 bits (209), Expect = 1e-16
Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 21/324 (6%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A +L + + ++ + N+ K TA+Q L
Sbjct: 4 LYEANGSFAINLLKMLGREDSSRNVFCSPLSISSALAMVFMGAKGNTAAQMSQALCLS-- 61
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
RD ++H G LL ++ S + + + +RL+G + F + S ++ Y E +++
Sbjct: 62 RDGDIHQGFRSLLAEVNKSGTQYLL-RTANRLFGEETCDFLPAYRESCQKFYQAELEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F +D + IN W + T+GK+ E+ V+ +LVNA++FK W E+F K
Sbjct: 121 FAKDTEECREHINHWVTEKTEGKISEILGAGTVDALTKLVLVNAIYFKGKWHEQFDRKNT 180
Query: 891 DNRGFMVTRSYTVG----------VTMMHRTGLY--NYYDDEKEKLQIVEMPLAHKLSSL 1034
F + + VG V MM + + Y DD QI+E+P A + S+
Sbjct: 181 RGMPFKINQ---VGKYLYLLERKTVQMMFKQAKFKMGYVDD--VHTQILELPYAGEELSM 235
Query: 1035 IIIMPHHVEPLERLEKLLTKSS*RSGWG-----RCKKGRCHFPGQRC-GGIDP*LAKTLG 1196
+I++P L +EK LT R+ W K + P + D L L
Sbjct: 236 VILLPDDNTDLAEVEKALTYEKFRA-WTDPENMTKNKVQVFLPRLKLEESYD--LESFLR 292
Query: 1197 RPGSD*SHQQNKADLSRMSGKKNL 1268
G + ++ KAD S MS KKN+
Sbjct: 293 SVGMIDAFEEAKADFSGMSAKKNV 316
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,966,917
Number of extensions: 990267
Number of successful extensions: 4327
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 4275
Number of HSP's successfully gapped: 44
Length of query: 430
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 324
Effective length of database: 15,340,888
Effective search space: 4970447712
Effective search space used: 4970447712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007401
(1291 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001193943.1| serpin H1 precursor [Homo sapiens]. 466 e-131
Alignment gi|NP_001226.2| serpin H1 precursor [Homo sapiens]. 466 e-131
Alignment gi|NP_000615.3| plasma serine protease inhibitor [Homo sapiens]. 94 3e-19
Alignment gi|NP_004146.1| serpin B9 [Homo sapiens]. 94 3e-19
Alignment gi|NP_942130.1| serpin B8 isoform a [Homo sapiens]. 91 3e-19
Alignment gi|NP_002631.3| serpin B8 isoform a [Homo sapiens]. 91 3e-19
Alignment gi|NP_109591.1| leukocyte elastase inhibitor [Homo sapiens]. 91 2e-18
Alignment gi|NP_001182220.1| serpin B6 [Homo sapiens]. 91 2e-18
Alignment gi|NP_004559.4| serpin B6 [Homo sapiens]. 91 2e-18
Alignment gi|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens]. 87 4e-18
>ref|NP_001193943.1| serpin H1 precursor [Homo sapiens].
Length = 418
Score = 466 bits (1199), Expect = e-131
Identities = 248/310 (80%), Positives = 258/310 (83%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
SPKAATLAERSAGLAFSLYQAMAKDQAVENI KA TASQAKAV
Sbjct: 37 SPKAATLAERSAGLAFSLYQAMAKDQAVENILVSPVVVASSLGLVSLGGKATTASQAKAV 96
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFA+DFVRSSKQHYNC
Sbjct: 97 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNC 156
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDE+FHH
Sbjct: 157 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHH 216
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGV MMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLII+MPHHVE
Sbjct: 217 KMVDNRGFMVTRSYTVGVMMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIILMPHHVE 276
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK + G+ KK + + L K L G + +NKAD
Sbjct: 277 PLERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 336
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 337 LSRMSGKKDL 346
>ref|NP_001226.2| serpin H1 precursor [Homo sapiens].
Length = 418
Score = 466 bits (1199), Expect = e-131
Identities = 248/310 (80%), Positives = 258/310 (83%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
SPKAATLAERSAGLAFSLYQAMAKDQAVENI KA TASQAKAV
Sbjct: 37 SPKAATLAERSAGLAFSLYQAMAKDQAVENILVSPVVVASSLGLVSLGGKATTASQAKAV 96
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFA+DFVRSSKQHYNC
Sbjct: 97 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNC 156
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDE+FHH
Sbjct: 157 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHH 216
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGV MMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLII+MPHHVE
Sbjct: 217 KMVDNRGFMVTRSYTVGVMMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIILMPHHVE 276
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK + G+ KK + + L K L G + +NKAD
Sbjct: 277 PLERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 336
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 337 LSRMSGKKDL 346
>ref|NP_000615.3| plasma serine protease inhibitor [Homo sapiens].
Length = 406
Score = 94.0 bits (232), Expect = 3e-19
Identities = 64/233 (27%), Positives = 108/233 (46%), Gaps = 3/233 (1%)
Frame = +3
Query: 354 ATLAERSA-GLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL-- 524
AT+A S F LY+A+A ++I ++T Q L
Sbjct: 38 ATVAPSSRRDFTFDLYRALASAAPSQSIFFSPVSISMSLAMLSLGAGSSTKMQILEGLGL 97
Query: 525 SAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCE 704
+ ++ ++E+H G +LL+ L N LG+ L+ V + FV + K Y +
Sbjct: 98 NLQKSSEKELHRGFQQLLQEL-NQPRDGFQLSLGNALFTDLVVDLQDTFVSAMKTLYLAD 156
Query: 705 HSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHK 884
NFRD A++ IN++ A+ T GK+ ++ K+++ ++VN +FFK W+ F+HK
Sbjct: 157 TFPTNFRDSAGAMKQINDYVAKQTKGKIVDLLKNLDSNAVVIMVNYIFFKAKWETSFNHK 216
Query: 885 MVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
+ F VT V V MM R Y+Y D ++V +P ++L I+
Sbjct: 217 GTQEQDFYVTSETVVRVPMMSREDQYHYLLDRNLSCRVVGVPYQGNATALFIL 269
>ref|NP_004146.1| serpin B9 [Homo sapiens].
Length = 376
Score = 94.0 bits (232), Expect = 3e-19
Identities = 80/315 (25%), Positives = 133/315 (42%), Gaps = 11/315 (3%)
Frame = +3
Query: 357 TLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQ 536
TL+ S A L + + +D N+ K TA+Q LS
Sbjct: 3 TLSNASGTFAIRLLKILCQDNPSHNVFCSPVSISSALAMVLLGAKGNTATQMAQALSLNT 62
Query: 537 LRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKI 716
+E++H LL + N + +RL+G + F F S Q Y+ E ++
Sbjct: 63 --EEDIHRAFQSLLTEV-NKAGTQYLLRTANRLFGEKTCQFLSTFKESCLQFYHAELKEL 119
Query: 717 NF-RDKRSALQSINEWAAQTTDGKLPEVT--KDVERTDGALLVNAMFFKPHWDERFHHKM 887
+F R + + IN W ++ T+GK+ E+ ++ +LVNA++FK W+E F
Sbjct: 120 SFIRAAEESRKHINTWVSKKTEGKIEELLPGSSIDAETRLVLVNAIYFKGKWNEPFDETY 179
Query: 888 VDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
F + + V MM++ + + + Q++E+P A K SL++++P L
Sbjct: 180 TREMPFKINQEEQRPVQMMYQEATFKLAHVGEVRAQLLELPYARKELSLLVLLPDDGVEL 239
Query: 1068 ERLEKLLTKSS*RSGWGR--CKKGR------CHFPGQRCGGIDP*LAKTLGRPGSD*SHQ 1223
+EK LT + W + C K F Q D + L G + Q
Sbjct: 240 STVEKSLTFEK-LTAWTKPDCMKSTEVEVLLPKFKLQE----DYDMESVLRHLGIVDAFQ 294
Query: 1224 QNKADLSRMSGKKNL 1268
Q KADLS MS +++L
Sbjct: 295 QGKADLSAMSAERDL 309
>ref|NP_942130.1| serpin B8 isoform a [Homo sapiens].
Length = 374
Score = 91.3 bits (225), Expect(2) = 3e-19
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 4/248 (1%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A SL++ + ++ N+ K +TA+Q L
Sbjct: 4 LCEANGTFAISLFKILGEEDNSRNVFFSPMSISSALAMVFMGAKGSTAAQMSQALCL--Y 61
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
+D ++H G LL + N T + +RL+G + F DF ++ Y E +++
Sbjct: 62 KDGDIHRGFQSLLSEV-NRTGTQYLLRTANRLFGEKTCDFLPDFKEYCQKFYQAELEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F D + IN+W A+ T+GK+ EV V+ +LVNA++FK W+E+F K
Sbjct: 121 FAEDTEECRKHINDWVAEKTEGKISEVLDAGTVDPLTKLVLVNAIYFKGKWNEQFDRKY- 179
Query: 891 DNRGFMV-TRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
RG + T V MM + + ++ Q++E+P + S++I++P L
Sbjct: 180 -TRGMLFKTNEEKKTVQMMFKEAKFKMGYADEVHTQVLELPYVEEELSMVILLPDDNTDL 238
Query: 1068 ERLEKLLT 1091
+EK LT
Sbjct: 239 AVVEKALT 246
Score = 23.1 bits (48), Expect(2) = 3e-19
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 1126 KKAVAISLAKGVVELTHDLQKHLAGLGLTEAINKTK 1233
K V + L + +E ++DL+ L LG+ +A ++ K
Sbjct: 261 KSKVQVFLPRLKLEESYDLEPFLRRLGMIDAFDEAK 296
>ref|NP_002631.3| serpin B8 isoform a [Homo sapiens].
Length = 374
Score = 91.3 bits (225), Expect(2) = 3e-19
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 4/248 (1%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A SL++ + ++ N+ K +TA+Q L
Sbjct: 4 LCEANGTFAISLFKILGEEDNSRNVFFSPMSISSALAMVFMGAKGSTAAQMSQALCL--Y 61
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
+D ++H G LL + N T + +RL+G + F DF ++ Y E +++
Sbjct: 62 KDGDIHRGFQSLLSEV-NRTGTQYLLRTANRLFGEKTCDFLPDFKEYCQKFYQAELEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F D + IN+W A+ T+GK+ EV V+ +LVNA++FK W+E+F K
Sbjct: 121 FAEDTEECRKHINDWVAEKTEGKISEVLDAGTVDPLTKLVLVNAIYFKGKWNEQFDRKY- 179
Query: 891 DNRGFMV-TRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
RG + T V MM + + ++ Q++E+P + S++I++P L
Sbjct: 180 -TRGMLFKTNEEKKTVQMMFKEAKFKMGYADEVHTQVLELPYVEEELSMVILLPDDNTDL 238
Query: 1068 ERLEKLLT 1091
+EK LT
Sbjct: 239 AVVEKALT 246
Score = 23.1 bits (48), Expect(2) = 3e-19
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 1126 KKAVAISLAKGVVELTHDLQKHLAGLGLTEAINKTK 1233
K V + L + +E ++DL+ L LG+ +A ++ K
Sbjct: 261 KSKVQVFLPRLKLEESYDLEPFLRRLGMIDAFDEAK 296
>ref|NP_109591.1| leukocyte elastase inhibitor [Homo sapiens].
Length = 379
Score = 91.3 bits (225), Expect = 2e-18
Identities = 62/251 (24%), Positives = 122/251 (48%), Gaps = 7/251 (2%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+ + A L+ A++++ NI + TA+Q +
Sbjct: 4 LSSANTRFALDLFLALSENNPAGNIFISPFSISSAMAMVFLGTRGNTAAQLSKTFHFNTV 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
EEVH+ L ++ A + KL +RLYG + +F +F+ S+++ Y + + ++
Sbjct: 64 --EEVHSRFQSLNADINKRGASYIL-KLANRLYGEKTYNFLPEFLVSTQKTYGADLASVD 120
Query: 720 FRD-KRSALQSINEWAAQTTDGKLPEVTKD--VERTDGALLVNAMFFKPHWDERFHHKMV 890
F+ A ++IN+W T+GK+PE+ V+ +LVNA++FK +W ++F +
Sbjct: 121 FQHASEDARKTINQWVKGQTEGKIPELLASGMVDNMTKLVLVNAIYFKGNWKDKFMKEAT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEP-- 1064
N F + + V MM++ + Y E K +++E+P + S++I++P +E
Sbjct: 181 TNAPFRLNKKDRKTVKMMYQKKKFAYGYIEDLKCRVLELPYQGEELSMVILLPDDIEDES 240
Query: 1065 --LERLEKLLT 1091
L+++E+ LT
Sbjct: 241 TGLKKIEEQLT 251
>ref|NP_001182220.1| serpin B6 [Homo sapiens].
Length = 376
Score = 91.3 bits (225), Expect = 2e-18
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 4/248 (1%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
LAE + A +L + + KD + +N+ K TA+Q +LS +
Sbjct: 4 LAEANGTFALNLLKTLGKDNS-KNVFFSPMSMSCALAMVYMGAKGNTAAQMAQILSFNKS 62
Query: 540 RDE-EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKI 716
++H G LL + N T ++ +RL+G S F F S ++ Y E ++
Sbjct: 63 GGGGDIHQGFQSLLTEV-NKTGTQYLLRMANRLFGEKSCDFLSSFRDSCQKFYQAEMEEL 121
Query: 717 NFRDK-RSALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKM 887
+F + + IN W A+ T+GK+ E+ V+ +LVNA++F+ +WDE+F +
Sbjct: 122 DFISAVEKSRKHINTWVAEKTEGKIAELLSPGSVDPLTRLVLVNAVYFRGNWDEQFDKEN 181
Query: 888 VDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
+ R F V+++ V MM + + + QI+ +P K ++II++P L
Sbjct: 182 TEERLFKVSKNEEKPVQMMFKQSTFKKTYIGEIFTQILVLPYVGKELNMIIMLPDETTDL 241
Query: 1068 ERLEKLLT 1091
+EK LT
Sbjct: 242 RTVEKELT 249
>ref|NP_004559.4| serpin B6 [Homo sapiens].
Length = 376
Score = 91.3 bits (225), Expect = 2e-18
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 4/248 (1%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
LAE + A +L + + KD + +N+ K TA+Q +LS +
Sbjct: 4 LAEANGTFALNLLKTLGKDNS-KNVFFSPMSMSCALAMVYMGAKGNTAAQMAQILSFNKS 62
Query: 540 RDE-EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKI 716
++H G LL + N T ++ +RL+G S F F S ++ Y E ++
Sbjct: 63 GGGGDIHQGFQSLLTEV-NKTGTQYLLRMANRLFGEKSCDFLSSFRDSCQKFYQAEMEEL 121
Query: 717 NFRDK-RSALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKM 887
+F + + IN W A+ T+GK+ E+ V+ +LVNA++F+ +WDE+F +
Sbjct: 122 DFISAVEKSRKHINTWVAEKTEGKIAELLSPGSVDPLTRLVLVNAVYFRGNWDEQFDKEN 181
Query: 888 VDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
+ R F V+++ V MM + + + QI+ +P K ++II++P L
Sbjct: 182 TEERLFKVSKNEEKPVQMMFKQSTFKKTYIGEIFTQILVLPYVGKELNMIIMLPDETTDL 241
Query: 1068 ERLEKLLT 1091
+EK LT
Sbjct: 242 RTVEKELT 249
>ref|NP_001002236.1| alpha-1-antitrypsin precursor [Homo sapiens].
Length = 418
Score = 87.4 bits (215), Expect(2) = 4e-18
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 2/241 (0%)
Frame = +3
Query: 375 AGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAE--QLRDE 548
A AFSLY+ +A NI KA T + L+ ++ +
Sbjct: 55 AEFAFSLYRQLAHQSNSTNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEA 114
Query: 549 EVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRD 728
++H G ELLR+L N + G+ L+ + + F+ K+ Y+ E +NF D
Sbjct: 115 QIHEGFQELLRTL-NQPDSQLQLTTGNGLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGD 173
Query: 729 KRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMVDNRGFM 908
A + IN++ + T GK+ ++ K+++R LVN +FFK W+ F K + F
Sbjct: 174 TEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVNYIFFKGKWERPFEVKDTEEEDFH 233
Query: 909 VTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLERLEKLL 1088
V + TV V MM R G++N +K ++ M ++ I +P + L+ LE L
Sbjct: 234 VDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGN-ATAIFFLPDEGK-LQHLENEL 291
Query: 1089 T 1091
T
Sbjct: 292 T 292
Score = 23.1 bits (48), Expect(2) = 4e-18
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 1108 LDGEDAKKAVAISLAKGVVELTHDLQKHLAGLGLTEAIN 1224
L+ ED + A ++ L K + T+DL+ L LG+T+ +
Sbjct: 300 LENEDRRSA-SLHLPKLSITGTYDLKSVLGQLGITKVFS 337
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,989,427
Number of extensions: 959202
Number of successful extensions: 4020
Number of sequences better than 1.0e-05: 52
Number of HSP's gapped: 3961
Number of HSP's successfully gapped: 67
Length of query: 430
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 325
Effective length of database: 14,835,944
Effective search space: 4821681800
Effective search space used: 4821681800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007401
(1291 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033955.2| serpin H1 precursor [Mus musculus]. 458 e-129
Alignment gi|NP_001104514.1| serpin H1 precursor [Mus musculus]. 458 e-129
Alignment gi|NP_001104513.1| serpin H1 precursor [Mus musculus]. 458 e-129
Alignment gi|NP_766640.1| leukocyte elastase inhibitor B [Mus musculus]. 91 2e-18
Alignment gi|NP_079705.2| leukocyte elastase inhibitor A [Mus musculus]. 91 2e-18
Alignment gi|NP_033282.1| serine (or cysteine) proteinase inhibitor, clad... 91 3e-18
Alignment gi|NP_766541.2| plasma serine protease inhibitor precursor [Mus... 88 2e-17
Alignment gi|NP_035589.1| serpin B8 isoform 1 [Mus musculus]. 81 3e-17
Alignment gi|NP_932145.3| serpin B10 isoform 1 [Mus musculus]. 79 2e-16
Alignment gi|NP_958764.1| serpin B3 [Mus musculus]. 84 3e-16
>ref|NP_033955.2| serpin H1 precursor [Mus musculus].
Length = 417
Score = 458 bits (1178), Expect = e-129
Identities = 242/310 (78%), Positives = 256/310 (82%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
S KA TLAERS GLAFSLYQAMAKDQAVENI KA TASQAKAV
Sbjct: 36 SSKATTLAERSTGLAFSLYQAMAKDQAVENILLSPLVVASSLGLVSLGGKATTASQAKAV 95
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAE+LRDEEVH GLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFA+DFVRSSKQHYNC
Sbjct: 96 LSAEKLRDEEVHTGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNC 155
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWA+QTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDE+FHH
Sbjct: 156 EHSKINFRDKRSALQSINEWASQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHH 215
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQ+VEMPLAHKLSSLII+MPHHVE
Sbjct: 216 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQMVEMPLAHKLSSLIILMPHHVE 275
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK ++ G+ KK + + L K L G + +NKAD
Sbjct: 276 PLERLEKLLTKEQLKAWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 335
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 336 LSRMSGKKDL 345
>ref|NP_001104514.1| serpin H1 precursor [Mus musculus].
Length = 417
Score = 458 bits (1178), Expect = e-129
Identities = 242/310 (78%), Positives = 256/310 (82%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
S KA TLAERS GLAFSLYQAMAKDQAVENI KA TASQAKAV
Sbjct: 36 SSKATTLAERSTGLAFSLYQAMAKDQAVENILLSPLVVASSLGLVSLGGKATTASQAKAV 95
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAE+LRDEEVH GLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFA+DFVRSSKQHYNC
Sbjct: 96 LSAEKLRDEEVHTGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNC 155
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWA+QTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDE+FHH
Sbjct: 156 EHSKINFRDKRSALQSINEWASQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHH 215
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQ+VEMPLAHKLSSLII+MPHHVE
Sbjct: 216 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQMVEMPLAHKLSSLIILMPHHVE 275
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK ++ G+ KK + + L K L G + +NKAD
Sbjct: 276 PLERLEKLLTKEQLKAWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 335
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 336 LSRMSGKKDL 345
>ref|NP_001104513.1| serpin H1 precursor [Mus musculus].
Length = 417
Score = 458 bits (1178), Expect = e-129
Identities = 242/310 (78%), Positives = 256/310 (82%), Gaps = 1/310 (0%)
Frame = +3
Query: 342 SPKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAV 521
S KA TLAERS GLAFSLYQAMAKDQAVENI KA TASQAKAV
Sbjct: 36 SSKATTLAERSTGLAFSLYQAMAKDQAVENILLSPLVVASSLGLVSLGGKATTASQAKAV 95
Query: 522 LSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNC 701
LSAE+LRDEEVH GLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFA+DFVRSSKQHYNC
Sbjct: 96 LSAEKLRDEEVHTGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNC 155
Query: 702 EHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHH 881
EHSKINFRDKRSALQSINEWA+QTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDE+FHH
Sbjct: 156 EHSKINFRDKRSALQSINEWASQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHH 215
Query: 882 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVE 1061
KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQ+VEMPLAHKLSSLII+MPHHVE
Sbjct: 216 KMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQMVEMPLAHKLSSLIILMPHHVE 275
Query: 1062 PLERLEKLLTKSS*RSGWGRC-KKGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKAD 1238
PLERLEKLLTK ++ G+ KK + + L K L G + +NKAD
Sbjct: 276 PLERLEKLLTKEQLKAWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNKAD 335
Query: 1239 LSRMSGKKNL 1268
LSRMSGKK+L
Sbjct: 336 LSRMSGKKDL 345
>ref|NP_766640.1| leukocyte elastase inhibitor B [Mus musculus].
Length = 382
Score = 91.3 bits (225), Expect = 2e-18
Identities = 59/208 (28%), Positives = 112/208 (53%), Gaps = 7/208 (3%)
Frame = +3
Query: 489 KAATASQAKAVLSAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAED 668
K +TA+Q L + + E++H+ L +S A + T KL +RLYG + +F +
Sbjct: 47 KGSTAAQLSKTLHFDSV--EDIHSCFQSLTAEVSKLGASH-TLKLANRLYGEKTYNFLPE 103
Query: 669 FVRSSKQHYNCEHSKINFRD-KRSALQSINEWAAQTTDGKLPEVTKD--VERTDGALLVN 839
F+ S+++ Y+ + + ++F+ A + IN+W T+GK+PE+ V+ +LVN
Sbjct: 104 FLASTQKMYSADLAAVDFQHASEDARKEINQWVKGQTEGKIPELLAKGVVDSMTKLVLVN 163
Query: 840 AMFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAH 1019
A++FK W+E+F + N F + + T V MM++ + + K +++EMP
Sbjct: 164 AIYFKGIWEEQFMTRETINAPFRLNKKDTKTVKMMYQKKKFPFGYISDLKCKVLEMPYQG 223
Query: 1020 KLSSLIIIMPHHVEP----LERLEKLLT 1091
S++I++P +E L+++E+ LT
Sbjct: 224 GELSMVILLPEDIEDESTGLKKIEEQLT 251
>ref|NP_079705.2| leukocyte elastase inhibitor A [Mus musculus].
Length = 379
Score = 91.3 bits (225), Expect = 2e-18
Identities = 79/314 (25%), Positives = 144/314 (45%), Gaps = 11/314 (3%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+ + A L+Q + + NI K +TA+Q + +
Sbjct: 4 LSSANTLFALELFQTLNESSPTGNIFFSPFSISSALAMVILGAKGSTAAQLSKTFHFDSV 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
E++H+ L +S A + T KL +RLYG + +F +++ S+++ Y + + ++
Sbjct: 64 --EDIHSRFQSLNAEVSKRGASH-TLKLANRLYGEKTYNFLPEYLASTQKMYGADLAPVD 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEVTKD--VERTDGALLVNAMFFKPHWDERFHHKMV 890
F A + IN+W T+GK+PE+ V+ +LVNA++FK W+E+F +
Sbjct: 121 FLHASEDARKEINQWVKGQTEGKIPELLSVGVVDSMTKLVLVNAIYFKGMWEEKFMTEDT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEP-- 1064
+ F +++ T V MM++ + + K +++EMP S++I++P +E
Sbjct: 181 TDAPFRLSKKDTKTVKMMYQKKKFPFGYISDLKCKVLEMPYQGGELSMVILLPKDIEDES 240
Query: 1065 --LERLEKLLTKSS*RSGWGRCKKGR---CHFPGQRCGGIDP-*LAKTLGRPGSD*SHQQ 1226
L+++EK +T W + + H R + L LGR G
Sbjct: 241 TGLKKIEKQITLEK-LLEWTKRENLEFIDVHVKLPRFKIEESYTLNSNLGRLGVQDLFSS 299
Query: 1227 NKADLSRMSGKKNL 1268
+KADLS MSG ++L
Sbjct: 300 SKADLSGMSGSRDL 313
>ref|NP_033282.1| serine (or cysteine) proteinase inhibitor, clade B, member 9 [Mus
musculus].
Length = 374
Score = 90.5 bits (223), Expect = 3e-18
Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 3/248 (1%)
Frame = +3
Query: 357 TLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQ 536
TL+E + A L + + + +N+ K TA Q L
Sbjct: 3 TLSEGNGTFAIHLLKMLCQSNPSKNVCYSPASISSALAMVLLGAKGQTAVQISQALGLN- 61
Query: 537 LRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKI 716
++E +H G LLR L N R + ++ +RL+ + + F SS Y+ E ++
Sbjct: 62 -KEEGIHQGFQLLLRKL-NKPDRKYSLRVANRLFADKTCEVLQTFKESSLHFYDSEMEQL 119
Query: 717 NFRDKRS-ALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKM 887
+F ++ + Q IN W ++ T+GK+PE+ V+ +L+NA++FK W + F+ +
Sbjct: 120 SFAEEAEVSRQHINTWVSKQTEGKIPELLSGGSVDSETRLVLINALYFKGKWHQPFNKEY 179
Query: 888 VDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
+ F + + V MM R YN ++ + Q++ MP SL++++P L
Sbjct: 180 TMDMPFKINKDEKRPVQMMCREDTYNLAYVKEVQAQVLVMPYEGMELSLVVLLPDEGVDL 239
Query: 1068 ERLEKLLT 1091
++E LT
Sbjct: 240 SKVENNLT 247
>ref|NP_766541.2| plasma serine protease inhibitor precursor [Mus musculus].
Length = 405
Score = 87.8 bits (216), Expect = 2e-17
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 2/226 (0%)
Frame = +3
Query: 372 SAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAK--AVLSAEQLRD 545
S AF LY+A+ + +N+ T +Q LS +Q ++
Sbjct: 43 SKDFAFRLYRALVSESPGQNVFFSPLSVSMSLGMLSLGAGLKTKTQILDGLGLSLQQGQE 102
Query: 546 EEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFR 725
+++H G +LL+ + + LGS L+ +V +DF+ + K Y + NF
Sbjct: 103 DKLHKGFQQLLQRF-RQPSDGLQLSLGSALFKDPAVHIRDDFLSAMKTLYMSDTFSTNFG 161
Query: 726 DKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMVDNRGF 905
+ A + IN + A+ T GK+ + KD++ T ++VN +FFK W F F
Sbjct: 162 NPEIAKKQINNYVAKQTKGKIVDFIKDLDSTHVMIVVNYIFFKAKWQTAFSETNTHKMDF 221
Query: 906 MVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
VT T V MM+R Y+YY D+ +V +P +L I+
Sbjct: 222 HVTPKRTTQVPMMNREDGYSYYLDQNISCTVVGIPYQGNAIALFIL 267
>ref|NP_035589.1| serpin B8 isoform 1 [Mus musculus].
Length = 374
Score = 81.3 bits (199), Expect(2) = 3e-17
Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 3/247 (1%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+E + A SL + +++ N+ K TA+Q VL
Sbjct: 4 LSEANGSFAISLLKILSEKDKSRNLFFCPMSVSSALAMVYLGAKGNTATQMSEVLGLSGN 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
D VH LL + N T K RL+G S F F S + Y +++
Sbjct: 64 GD--VHQSFQTLLAEI-NKTDTQYLLKSACRLFGEESCDFLSTFKESCHKFYQAGLEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEVTK--DVERTDGALLVNAMFFKPHWDERFHHKMV 890
F +D + IN+W ++ T+GK+ EV V +LVNAM+FK W +F K
Sbjct: 121 FAKDTEGCRKHINDWVSEKTEGKISEVLSPGTVCPLTKLVLVNAMYFKGKWKAQFDRKYT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLE 1070
F T V MM + + ++ +Q++ +P A + S++I++P L
Sbjct: 181 RGMPFK-TNQEKKTVQMMFKHAKFKMGHVDEVNMQVLALPYAEEELSMVILLPDESTDLA 239
Query: 1071 RLEKLLT 1091
+EK LT
Sbjct: 240 VVEKALT 246
Score = 26.2 bits (56), Expect(2) = 3e-17
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 1135 VAISLAKGVVELTHDLQKHLAGLGLTEAINKTKPTCLACRAKRT*PGQRV 1284
V + L + +E ++DL+ L LG+T+A +T+ K+ P +V
Sbjct: 264 VQVFLPRLKLEESYDLETVLQNLGMTDAFEETRADFSGMTTKKNVPVSKV 313
>ref|NP_932145.3| serpin B10 isoform 1 [Mus musculus].
Length = 357
Score = 78.6 bits (192), Expect(2) = 2e-16
Identities = 50/203 (24%), Positives = 98/203 (48%), Gaps = 10/203 (4%)
Frame = +3
Query: 513 KAVLSAEQLRDEEVHAGLGELLRSLSNSTARNV-------TWKLGSRLYGPSSVSFAEDF 671
K+ +E+ R E ++G E ++S + A + K +R+YG + F +
Sbjct: 27 KSCPDSEKKRKMEFNSGKFEEIQSDFQTLAAEILKPGNSYVLKTANRIYGEKTYPFHNKY 86
Query: 672 VRSSKQHYNCEHSKINFRDKRSALQS-INEWAAQTTDGKLPEVTKD--VERTDGALLVNA 842
+ K ++ E +NF + ++ IN W T GK+P + D V+ +LVNA
Sbjct: 87 LEDMKTYFGAEPQSVNFVEASGQIRKEINSWVGSQTGGKIPNLLPDDSVDTKTKMVLVNA 146
Query: 843 MFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHK 1022
++FK W+ +F K R F V ++ + V MM + E+ + +++ ++
Sbjct: 147 LYFKGTWEHQFSVKSTTERPFRVNKTTSKPVQMMSMKQSLQVFHIEELQTIGLQLHYQNR 206
Query: 1023 LSSLIIIMPHHVEPLERLEKLLT 1091
SL++++P ++ LE+LE+ +T
Sbjct: 207 DLSLLLLLPEAIDGLEQLERAIT 229
Score = 25.8 bits (55), Expect(2) = 2e-16
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 1135 VAISLAKGVVELTHDLQKHLAGLGLTEAINKTK 1233
V + L K +E ++DL+ L G+G+T+ +++K
Sbjct: 247 VQLYLPKFKMEESYDLKSALRGMGMTDVFSQSK 279
>ref|NP_958764.1| serpin B3 [Mus musculus].
Length = 387
Score = 83.6 bits (205), Expect = 3e-16
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 15/216 (6%)
Frame = +3
Query: 489 KAATASQAKAVL------------SAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSR 632
KA T Q K VL SAE +E VH L+ L N K+ +
Sbjct: 45 KANTEQQIKKVLHFNETTKKTTEKSAESHDEENVHQQFQMLMTQL-NKFNNAYDLKVPNS 103
Query: 633 LYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRSALQS-INEWAAQTTDGKLPEV--TK 803
+YG F + F++ +++Y ++F Q IN W A+ T+GK+ ++ +
Sbjct: 104 IYGAKDFPFLQTFLKDIRKYYQANVESLDFAHAAEESQKKINSWMARQTNGKIKDLFPSG 163
Query: 804 DVERTDGALLVNAMFFKPHWDERFHHKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEK 983
+ + +LVNA++FK W+ +F K F + ++ + V MM + +N+ E
Sbjct: 164 SLNSSTILVLVNAVYFKGQWNHKFDEKHTREEKFWLNKNTSKPVQMMKQRNKFNFIFLEN 223
Query: 984 EKLQIVEMPLAHKLSSLIIIMPHHVEPLERLEKLLT 1091
+ +IVE+P K S+ +++P ++ L++ E+ LT
Sbjct: 224 VQAKIVEIPYKGKELSMFVLLPVEIDGLKKFEEQLT 259
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,679,744
Number of extensions: 787854
Number of successful extensions: 3430
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 3345
Number of HSP's successfully gapped: 83
Length of query: 430
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 326
Effective length of database: 12,493,815
Effective search space: 4072983690
Effective search space used: 4072983690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007401
(1291 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001104726.1| serpin B9 [Sus scrofa]. 93 3e-19
Alignment gi|XP_001928604.1| PREDICTED: plasma serine protease inhibitor-... 90 2e-18
Alignment gi|XP_003128752.2| PREDICTED: serpin A12-like [Sus scrofa]. 90 3e-18
Alignment gi|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa]. 88 9e-18
Alignment gi|XP_001924824.3| PREDICTED: serpin B10 [Sus scrofa]. 87 2e-17
Alignment gi|XP_001928637.3| PREDICTED: serpin A3-5 [Sus scrofa]. 83 3e-16
Alignment gi|XP_001925217.2| PREDICTED: serpin B11-like [Sus scrofa]. 83 4e-16
Alignment gi|NP_998952.1| alpha-1-antichymotrypsin 2 [Sus scrofa]. 83 4e-16
Alignment gi|XP_003353495.1| PREDICTED: serpin B8 [Sus scrofa]. 79 1e-15
Alignment gi|XP_003132567.1| PREDICTED: serpin I2 [Sus scrofa]. 80 2e-15
>ref|NP_001104726.1| serpin B9 [Sus scrofa].
Length = 375
Score = 93.2 bits (230), Expect = 3e-19
Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 8/312 (2%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L+E + A L + + +D N+ K TA+Q VLS
Sbjct: 4 LSEANGTFALRLLKILCQDDPSHNVFYSPVSISSALAMVLLGAKGDTAAQLAQVLSLNTE 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
+D +H LL L+ + R + + ++L+G S F F S + Y+ E +++
Sbjct: 64 KD--IHQDFQALLAELNKPSTRYLL-RTANKLFGEKSREFLSTFKESCLRFYDAELEQLS 120
Query: 720 FRDKRSALQS-INEWAAQTTDGKLPEVT--KDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F A + IN W ++ T+GK+PEV ++ +LVNA++FK WD++F K
Sbjct: 121 FASAAEASRKQINAWVSKKTEGKIPEVLPWNSIDEQTRLVLVNAVYFKGRWDQQFDKKYT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLE 1070
F V + V MM + + E+ Q++E+P + S+++++P L
Sbjct: 181 REMPFRVNQKEQRPVQMMFQEATFRLGRVEEVPAQVLELPYEDRELSMVVLLPDDHVALS 240
Query: 1071 RLEKLLTKSS*RSGWGRCKKGR-----CHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKA 1235
+E+ LT W + ++ + P + L LG G + QQ KA
Sbjct: 241 EVERQLTFEK-LLAWTKPERMQSLDVEVFLPRFKLDASYD-LELLLGHLGVVDAFQQGKA 298
Query: 1236 DLSRMSGKKNLT 1271
D S M+ +++L+
Sbjct: 299 DFSAMAPERDLS 310
>ref|XP_001928604.1| PREDICTED: plasma serine protease inhibitor-like [Sus scrofa].
Length = 408
Score = 90.1 bits (222), Expect = 2e-18
Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 2/256 (0%)
Frame = +3
Query: 345 PKAATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL 524
P AT+A F LY+ +A +N+ +++T +Q L
Sbjct: 36 PAVATVAPGIRDFTFDLYRTLAAASPEQNVFFSPLSISMSLAMLSLGAQSSTKAQILEGL 95
Query: 525 --SAEQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYN 698
+ ++ +EE+H+ LLR L ++ LG+ L+ ++S E F+ + + Y
Sbjct: 96 GLNPQEGPEEELHSASQRLLRELGQPR-EDLQLSLGNALFTKPTLSIQEAFLGTLRTRYL 154
Query: 699 CEHSKINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFH 878
+ +F D A + IN + + T GK+ ++ K ++ T+ ++VN +FFK W+ F+
Sbjct: 155 ADVFPTDFEDPEGAQKQINNYVVKQTKGKIVDLVKGLDGTEVMVMVNYIFFKAKWETSFN 214
Query: 879 HKMVDNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHV 1058
HK+ + F VT V V MM R + Y D ++V +P ++ ++
Sbjct: 215 HKITHEQDFHVTSETVVRVPMMKREDQFYYLLDRNLSCKVVGVPYQGNATAFFVLPQE-- 272
Query: 1059 EPLERLEKLLTKSS*R 1106
+E++EK L + + R
Sbjct: 273 GGMEQVEKGLKEKTLR 288
>ref|XP_003128752.2| PREDICTED: serpin A12-like [Sus scrofa].
Length = 414
Score = 89.7 bits (221), Expect = 3e-18
Identities = 57/231 (24%), Positives = 106/231 (45%)
Frame = +3
Query: 351 AATLAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSA 530
A LA+R+ F LY+ ++ + + +NI + +T ++ K +
Sbjct: 45 AQELAKRNTDFGFRLYKKLSCNNSNKNIFFSPWSISVAFSMLTLGAQDSTLAEIKQGFNF 104
Query: 531 EQLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHS 710
+ ++++H G L+ L N LG+ L+ + + F+ K Y +
Sbjct: 105 RNMPEKDLHEGFHYLINRL-NQRNHGHDLGLGNALFIDKKLKPQKKFLTDVKNLYKADTI 163
Query: 711 KINFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
INFR+ +A + IN++ Q T GK+ + K ++ + LL+N +FF+ W F +
Sbjct: 164 PINFRNLENAQRQINDYVNQKTQGKISNLVKKIDPSTLILLINYVFFQARWKHEFDPQAT 223
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
F++ + TV V MM + +Y DE+ ++EMP LS+L I+
Sbjct: 224 KEEDFILEGNRTVKVPMMIHSSVYAVGHDEQLSCTVLEMPFKGNLSALFIL 274
>ref|NP_999560.1| alpha-1-antitrypsin precursor [Sus scrofa].
Length = 421
Score = 87.8 bits (216), Expect(2) = 9e-18
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 2/247 (0%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVL--SAE 533
+A A AFSLY+ +A+ NI K AT ++ L +
Sbjct: 53 IAPNLADFAFSLYRQVARQSNTSNIFLSPVTIARAFAMLSLGTKGATHAEILEGLQFNLT 112
Query: 534 QLRDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSK 713
+ + E+H G LL +L N + G+ L+ F+ K Y+ E
Sbjct: 113 EKAEAEIHEGFQHLLHTL-NQPDNQLQLTTGNGLFIDEKAKLVPKFLEDVKNLYHSEAFS 171
Query: 714 INFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMVD 893
INFRD A + IN++ + + GK+ ++ ++++ LVN +FFK W++ F +
Sbjct: 172 INFRDTEEAKKCINDYVEKGSQGKIVDLVDELDKDTVFALVNYIFFKGKWEKPFEVEQTT 231
Query: 894 NRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLER 1073
F V TV V MM+R G+++ + +K ++ M ++ I+ L +
Sbjct: 232 EEDFHVDEETTVKVPMMNRLGMFDLHHCDKLSSWVLLMDYVATATAFFILPDQ--GKLHQ 289
Query: 1074 LEKLLTK 1094
LE +LTK
Sbjct: 290 LEDMLTK 296
Score = 20.8 bits (42), Expect(2) = 9e-18
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 1141 ISLAKGVVELTHDLQKHLAGLGLTEAIN 1224
+ L K + T+DL+ L LG+T+ +
Sbjct: 313 LHLPKLTISGTYDLKSLLGNLGITKVFS 340
>ref|XP_001924824.3| PREDICTED: serpin B10 [Sus scrofa].
Length = 397
Score = 87.4 bits (215), Expect = 2e-17
Identities = 63/249 (25%), Positives = 116/249 (46%), Gaps = 8/249 (3%)
Frame = +3
Query: 546 EEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFR 725
EE+H+ L+ ++NS+ + K +R+YG + F ++ K ++ E +NF
Sbjct: 86 EEIHSDFQALISEINNSSNACIL-KTANRIYGEKTYPFCNKYLEDMKTYFGAEPQSVNFM 144
Query: 726 DKRSALQS-INEWAAQTTDGKLPEVTKD--VERTDGALLVNAMFFKPHWDERFHHKMVDN 896
+ ++ IN W T+GK+ + D V+ +LVNA++FK W+ +F +
Sbjct: 145 EASGQIRKEINSWVESQTEGKILNLLPDDAVDSATRMVLVNALYFKGTWEHQFSVQNTTE 204
Query: 897 RGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLERL 1076
+ F + ++ + V MM + EK + +++ + SL+I++P + L++L
Sbjct: 205 KPFRINKTTSKPVQMMSMKEKLEVFHIEKPEAIGLQLFYESRDLSLLILLPEDISGLDQL 264
Query: 1077 EKLLTKSS*RSGWGRCK-----KGRCHFPGQRCGGIDP*LAKTLGRPGSD*SHQQNKADL 1241
EK +T + S W + H P + L TL G + Q+KAD
Sbjct: 265 EKAITYEN-LSEWTSADMMELYEVELHLPKFKLEETYD-LKSTLSSMGMSDAFSQSKADF 322
Query: 1242 SRMSGKKNL 1268
S MS ++NL
Sbjct: 323 SGMSLERNL 331
>ref|XP_001928637.3| PREDICTED: serpin A3-5 [Sus scrofa].
Length = 393
Score = 83.2 bits (204), Expect = 3e-16
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 3/223 (1%)
Frame = +3
Query: 384 AFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQLR--DEEVH 557
AFSLY+ +A EN+ + T ++ L + + E+H
Sbjct: 91 AFSLYKQLALTNPHENVIFSPLSVSMALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIH 150
Query: 558 AGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRS 737
G LL +L S+ + +LG+ ++ + + FV+ + + Y+ E NF+D +
Sbjct: 151 QGFQHLLSTLDRSS-NLLQLRLGNAMFIDEQLELLDKFVQDAHELYHSEAFPTNFQDLEA 209
Query: 738 ALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMVDNRGFMVTR 917
A + IN++ T+GK+ ++ K ++ +LVN ++FK W F + F V++
Sbjct: 210 ARRLINDYVKNKTEGKIVDLFKKLDPLTKVVLVNYIYFKAKWKTPFDPEHTIESTFHVSK 269
Query: 918 SYTVGVTMMHRTGLYN-YYDDEKEKLQIVEMPLAHKLSSLIII 1043
+ TV V MM GL Y+ DE+ +VE+P S+L I+
Sbjct: 270 NRTVKVPMMSLRGLETPYFRDEELACTVVELPYTSNDSALFIL 312
>ref|XP_001925217.2| PREDICTED: serpin B11-like [Sus scrofa].
Length = 392
Score = 82.8 bits (203), Expect = 4e-16
Identities = 46/186 (24%), Positives = 95/186 (51%), Gaps = 3/186 (1%)
Frame = +3
Query: 552 VHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFR-D 728
+H+ G L + N N T + +RLYG +++F + ++ S++ Y ++F
Sbjct: 83 IHSQFGVLFSQI-NQPDSNYTLSIANRLYGTKAMAFHKQYLNCSEKLYQASLQTVDFEWS 141
Query: 729 KRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMVDNRG 902
++IN W T+GK+ + ++ + +LVNA++FK W +F K
Sbjct: 142 AEETRKTINAWVESKTNGKVTNLFGKGTIDSSCVMVLVNAIYFKGQWQNKFQEKETVKTP 201
Query: 903 FMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLERLEK 1082
F +++ +V V MM +TG + ++ ++Q++E+P + S+II++P L+++E+
Sbjct: 202 FQLSKGKSVIVEMMCQTGKFKLATIKEPQMQVLELPYVNHELSMIILLPVGTNDLDQVER 261
Query: 1083 LLTKSS 1100
L +
Sbjct: 262 QLNSKT 267
>ref|NP_998952.1| alpha-1-antichymotrypsin 2 [Sus scrofa].
Length = 415
Score = 82.8 bits (203), Expect = 4e-16
Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 3/223 (1%)
Frame = +3
Query: 384 AFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQLR--DEEVH 557
AFSLY+ +A EN+ + T ++ L + + E+H
Sbjct: 55 AFSLYKQLALTNPHENVIFSPLSVSMALAFLSLGARGPTLTELLEGLKFNLTKTPEAEIH 114
Query: 558 AGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINFRDKRS 737
G LL +L S+ + +LG+ ++ + + FV+ + + Y+ E NF+D +
Sbjct: 115 QGFQHLLSTLDRSS-NLLQLRLGNAMFIDEQLELLDKFVQDAHELYHSEAFPTNFQDLEA 173
Query: 738 ALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDERFHHKMVDNRGFMVTR 917
A + IN++ T+GK+ ++ K ++ +LVN ++FK W F+ + F V++
Sbjct: 174 ARRLINDYVKNKTEGKIVDLFKKLDPLTKVVLVNYIYFKAKWKTPFNPNLTTEADFHVSK 233
Query: 918 SYTVGVTMMH-RTGLYNYYDDEKEKLQIVEMPLAHKLSSLIII 1043
+ TV V MM R Y+ DE+ +VE+P S+L I+
Sbjct: 234 NRTVRVPMMGIRALTVPYFRDEELACTVVELPYTSNDSALFIL 276
>ref|XP_003353495.1| PREDICTED: serpin B8 [Sus scrofa].
Length = 374
Score = 78.6 bits (192), Expect(2) = 1e-15
Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 3/247 (1%)
Frame = +3
Query: 360 LAERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQL 539
L E + A +L + ++++ + N+ K T +Q L ++
Sbjct: 4 LREANGTFAINLLKMLSEEDNLRNVFLSPLSLSSALAMVLLGAKGNTEAQMSQALCLNRV 63
Query: 540 RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKIN 719
D VH LL+ ++ ST + + + +RL+G + F F S + Y + +++
Sbjct: 64 GD--VHQSFQSLLKEMNKSTTQCLL-RTANRLFGEKTCDFLPAFKESCQNFYEADLEELS 120
Query: 720 F-RDKRSALQSINEWAAQTTDGKLPEV--TKDVERTDGALLVNAMFFKPHWDERFHHKMV 890
F D + IN+W + T+GK+ E+ V +LVNA++FK W+++F K
Sbjct: 121 FAEDTEECRKHINDWVKEKTEGKISEILGAGTVGPLTKLVLVNAIYFKGKWNKQFDRKYT 180
Query: 891 DNRGFMVTRSYTVGVTMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPLE 1070
F T V MM + + ++ Q++E+P + S++I++P L
Sbjct: 181 RGMPFK-TNQEKKTVQMMFKQAKFKMGYVDEVHAQVLELPYVGEELSMVILLPDDNTDLA 239
Query: 1071 RLEKLLT 1091
+EK LT
Sbjct: 240 VVEKALT 246
Score = 22.7 bits (47), Expect(2) = 1e-15
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 1135 VAISLAKGVVELTHDLQKHLAGLGLTEAINKTKPTCLACRAKRT*PGQRV 1284
V + L + +E ++DL+ L LG+ +A + K ++ P +V
Sbjct: 264 VQVFLPRLKLEESYDLEAFLRSLGMIDAFEEAKADFSGMSVRKNVPVSKV 313
>ref|XP_003132567.1| PREDICTED: serpin I2 [Sus scrofa].
Length = 405
Score = 80.5 bits (197), Expect = 2e-15
Identities = 61/248 (24%), Positives = 104/248 (41%), Gaps = 5/248 (2%)
Frame = +3
Query: 363 AERSAGLAFSLYQAMAKDQAVENIXXXXXXXXXXXXXXXXXXKAATASQAKAVLSAEQLR 542
A+R+ A LYQA NI K Q + L ++
Sbjct: 23 AQRNTEFAMDLYQATCLSHK-NNIIISPLGTTLALGMIHLGAKGKAQQQIRQTLKFQETA 81
Query: 543 DEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFAEDFVRSSKQHYNCEHSKINF 722
E + L ++S + T+ L + LY + E ++ +K+ + ++F
Sbjct: 82 TGEEFSVLKSFFSAISEKK-QEFTFSLANALYLQEGFTVKEQYLHGNKEFFQSAIKLVDF 140
Query: 723 RDKRSALQSINEWAAQTTDGKLPEVTKDVE--RTDGALLVNAMFFKPHWDERFHHKMVDN 896
++ ++ ++I+ W TDGK+ ++ E +LVNA++FK W +RF +
Sbjct: 141 QNAKACAETISTWVESKTDGKIKDMFSGEEFGPLTRLVLVNAIYFKGDWKQRFRKEDTQL 200
Query: 897 RGFMVTRSYTVGVTMMH---RTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIIMPHHVEPL 1067
F V V MM RT Y Y+ + Q++E+P SLIII+P +
Sbjct: 201 MNFTQKDGVAVKVPMMKALLRTK-YGYFSESSMNCQVLELPYKDDEFSLIIILPAEDVNI 259
Query: 1068 ERLEKLLT 1091
E +EKL+T
Sbjct: 260 EEMEKLIT 267
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,612,892
Number of extensions: 615157
Number of successful extensions: 2592
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2559
Number of HSP's successfully gapped: 37
Length of query: 430
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 328
Effective length of database: 8,804,438
Effective search space: 2887855664
Effective search space used: 2887855664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007401
(1291 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 402 e-109
>Sscrofa_Chr09
|| Length = 153670197
Score = 402 bits (203), Expect = e-109
Identities = 229/235 (97%), Gaps = 2/235 (0%)
Strand = Plus / Plus
Query: 952 caggcctctacaactactatgacgacgagaaggagaagctgcaaattgtggagatgcccc 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10972331 caggcctctacaactactatgacgacgagaaggagaagctgcaaattgtggagatgcccc 10972390
Query: 1012 tggcccacaagctctccagcctcatcatcatcatgccccatcacgtggagcccctcgagc 1071
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 10972391 tggcccacaagctctccagcctcatcatcatcatgcctcatcacgtggagcccctcgagc 10972450
Query: 1072 gccttgaaaagctcctgacc-aagagcagctgaagatctggatggggaagatgca-aaaa 1129
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 10972451 gccttgaaaagctcctgaccaaagagcagctgaagatctggatggggaagatgcagaaaa 10972510
Query: 1130 aggccgttgccatttccctggccaaaggtgtggtggaattgacccatgacttgca 1184
|||||||||||||||||||| |||| |||||||||||| ||||||||||||||||
Sbjct: 10972511 aggccgttgccatttccctgcccaagggtgtggtggaagtgacccatgacttgca 10972565
Score = 365 bits (184), Expect = 4e-98
Identities = 187/188 (99%)
Strand = Plus / Plus
Query: 8 ggcggagccggggcgccctccggaagcttttccaactttccagaagtttctcgggacggg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10966769 ggcggagccggggcgccctccggaagcttttccaactttccagaagtttctcgggacggg 10966828
Query: 68 agggaggtggggtgggggaacgccatatatagatctggacggcgggggcgcggtggagag 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10966829 agggaggtggggtgggggaacgccatatatagatctggacggcgggggcgcggtggagag 10966888
Query: 128 tggaatccgttctcggctcgagtgtgacactgtgactgtgtcccggcgcccacccagccc 187
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10966889 tggaatccattctcggctcgagtgtgacactgtgactgtgtcccggcgcccacccagccc 10966948
Query: 188 ggccaggt 195
||||||||
Sbjct: 10966949 ggccaggt 10966956
Score = 198 bits (100), Expect = 5e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 856 cgcactgggatgagcgattccaccacaagatggtggacaaccgaggtttcatggtgaccc 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10972133 cgcactgggatgagcgattccaccacaagatggtggacaaccgaggtttcatggtgaccc 10972192
Query: 916 gttcctataccgtgggtgtcactatgatgcaccggacagg 955
||||||||||||||||||||||||||||||||||||||||
Sbjct: 10972193 gttcctataccgtgggtgtcactatgatgcaccggacagg 10972232
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 190 ccaggtcctccgtggtgctccgagcccgcctcccagccgccatgcgtgccctcctgctcc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10971200 ccaggtcctccgtggtgctccgagcccgcctcccagccgccatgcgtgccctcctgctcc 10971259
Query: 250 tcagcaccttctgcctcctg 269
||||||||||||||||||||
Sbjct: 10971260 tcagcaccttctgcctcctg 10971279
Score = 113 bits (57), Expect = 2e-22
Identities = 101/113 (89%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 1181 tgcaaaaacacttggccggcctgggtctgactgaagccatcaacaa-aacaaagccgacc 1239
|||| |||||| ||||||| |||||||||||||| |||||| |||| ||||| || ||||
Sbjct: 10976225 tgcagaaacacctggccgggctgggtctgactgaggccatcgacaagaacaaggcggacc 10976284
Query: 1240 tgtctcgcatgtcgggcaaaaagaacctg-acctggccagcgggttccacgcc 1291
||||||||||||||||||| ||| ||||| |||||||||||| ||||||||||
Sbjct: 10976285 tgtctcgcatgtcgggcaagaaggacctgtacctggccagcgtgttccacgcc 10976337
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,971,809
Number of extensions: 276
Number of successful extensions: 276
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 272
Number of HSP's successfully gapped: 5
Length of query: 1291
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1270
Effective length of database: 2,808,413,156
Effective search space: 3566684708120
Effective search space used: 3566684708120
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)