Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007402
(1123 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 429 e-132
Alignment gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru... 197 1e-50
Alignment gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 144 1e-34
Alignment gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ... 136 3e-32
Alignment gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus]. 132 6e-31
Alignment gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre... 125 3e-30
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 123 3e-28
Alignment gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9... 115 7e-26
Alignment gi|NP_001095835.1| estradiol 17-beta-dehydrogenase 1 [Bos tauru... 82 7e-16
Alignment gi|XP_001253408.1| PREDICTED: hydroxysteroid (17-beta) dehydrog... 82 7e-16
>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
Length = 404
Score = 429 bits (1104), Expect(3) = e-132
Identities = 216/289 (74%), Positives = 228/289 (78%)
Frame = +3
Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
MESWPWPSGGAW DWLCQR
Sbjct: 1 MESWPWPSGGAWLLVPARALLQLLRADLRLGRPLLAALALLAALDWLCQRLLPPLAALAV 60
Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
GWI LSRLARPQRLPVATRAVLITGCDSGFG ATAKKLD MGFTVLATVL+L+SPG
Sbjct: 61 LAATGWIVLSRLARPQRLPVATRAVLITGCDSGFGNATAKKLDTMGFTVLATVLDLNSPG 120
Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
A ELRACCS RLKLLQMDLTKP DISRVLEFTKVHT STGLWGLVNNAG NI VADAEL
Sbjct: 121 ALELRACCSSRLKLLQMDLTKPGDISRVLEFTKVHTPSTGLWGLVNNAGQNIFVADAELC 180
Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
PVAT+R+CMEVNFFG LEMTK LLPLLRRSSGRIVTVSSPAGDMPFPCL+AYGTSKAA+A
Sbjct: 181 PVATFRTCMEVNFFGALEMTKGLLPLLRRSSGRIVTVSSPAGDMPFPCLAAYGTSKAALA 240
Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQ 1001
LLM +FSCEL PWGVKVS+IQPACF+TE+VK+V QWEERK+QLLATLPQ
Sbjct: 241 LLMGNFSCELLPWGVKVSIIQPACFKTESVKDVHQWEERKQQLLATLPQ 289
Score = 43.5 bits (101), Expect(3) = e-132
Identities = 22/28 (78%), Positives = 23/28 (82%)
Frame = +1
Query: 1039 LEWAFLHSLSQGLPDLSPGVNAITDALL 1122
L FLHSLSQ LPDLSP V+AITDALL
Sbjct: 303 LNGQFLHSLSQALPDLSPVVDAITDALL 330
Score = 40.0 bits (92), Expect(3) = e-132
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 1001 ELLQAYGEDYIEHLNGHF 1054
ELLQAYGEDYIEHLNG F
Sbjct: 290 ELLQAYGEDYIEHLNGQF 307
>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
Length = 388
Score = 197 bits (501), Expect = 1e-50
Identities = 102/210 (48%), Positives = 131/210 (62%)
Frame = +3
Query: 366 LPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQM 545
LPV +AVLITGCDSGFG AK LD +GFTV A VL+ GA+ELR CS L +LQ+
Sbjct: 79 LPVDQKAVLITGCDSGFGHGLAKYLDELGFTVFAGVLDEQGSGAEELRRTCSKNLSVLQL 138
Query: 546 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725
++T +I K + GLW ++NNAG L D EL P+ Y+ CM VNFFG +
Sbjct: 139 NITNTQEIKAAYSKVKEKLQNKGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFFGAV 198
Query: 726 EMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKV 905
E+TK LPLLR+S GR+V +SS AG +P ++AYG+SKAA+ + EL WGVKV
Sbjct: 199 EVTKVFLPLLRKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKV 258
Query: 906 SVIQPACFRTEAVKNVDQWEERKRQLLATL 995
SVIQP F+T WE+ +R +L L
Sbjct: 259 SVIQPGGFKTNISGTSQMWEKLERTVLDNL 288
>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 344
Score = 144 bits (363), Expect = 1e-34
Identities = 88/215 (40%), Positives = 121/215 (56%), Gaps = 15/215 (6%)
Frame = +3
Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELD--SPGAQELRACCSPRLKLLQ 542
PV ++AVLITGCDSGFG + AK L + GF V A L D S G +EL + S RL+ +Q
Sbjct: 52 PVGSKAVLITGCDSGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRTVQ 111
Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
+++ K ++ + E + + GLWGLVNNAG + D E + + TY+ EVN +
Sbjct: 112 LNVCKSEEVDKAAEVIRSSLEDPEKGLWGLVNNAGISTF-GDVEFTSMETYKEVAEVNLW 170
Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
GT+ +TKA LPL+RR+ GR+V +SS G M S Y +K V D E+ P G
Sbjct: 171 GTVRVTKAFLPLIRRAKGRVVNISSMMGRMANVARSPYCITKFGVEAFSDCLRYEMHPLG 230
Query: 897 VKVSVIQPACF-----------RTEAVKNVDQWEE 968
VKVSV++P F R +A+ N WEE
Sbjct: 231 VKVSVVEPGNFIAATSLYGGTERIQAIAN-KMWEE 264
>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
Length = 317
Score = 136 bits (343), Expect = 3e-32
Identities = 85/204 (41%), Positives = 116/204 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNQLARQLDLRGLRVLAGCLT--EQGAEQLRNQTSDRLQTVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I+ E+ K GLWGLVNNAG AE + TYR + VN G +E+T ++L
Sbjct: 90 IAAATEWVKECVGDRGLWGLVNNAGIFHSHGYAEWIKIETYRDTLRVNLIGVIEVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL+R++ GRIV VSS G + F + Y SK V D ELQ +GVKVS+++P
Sbjct: 150 PLVRKAQGRIVNVSSILGRIAF-FGAVYSCSKYGVEAFSDILRRELQHFGVKVSMVEPGY 208
Query: 927 FRTEAVKNVDQWEERKRQLLATLP 998
FRT A+ + ++ E +Q+ P
Sbjct: 209 FRT-AMTDWQKFSEIMKQIWKETP 231
>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
Length = 318
Score = 132 bits (332), Expect = 6e-31
Identities = 79/223 (35%), Positives = 121/223 (54%)
Frame = +3
Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
W AL L Q LP + + ITGCDSGFG+ A +LD GF VLA+ L GA++L+
Sbjct: 12 WAALWLLRDRQCLPASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLT--PSGAEDLQ 69
Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
S RL +D+T P I + +++ + H GL+GLVNNAG ++ +
Sbjct: 70 RVASSRLHTTLLDVTDPQSIRQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDF 129
Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
+ + VN G + +T ALLPLL ++ GR++ ++S G + Y SK + DS
Sbjct: 130 QRVLNVNTLGPIGVTLALLPLLLQARGRVINITSVLGRLAANG-GGYCVSKFGLEAFSDS 188
Query: 870 FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLP 998
++ P+GV+VS+++P FRT V N++ E+ + A LP
Sbjct: 189 LRRDVAPFGVRVSIVEPGFFRT-PVTNLETLEDTLQACWARLP 230
>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
Length = 319
Score = 125 bits (314), Expect(2) = 3e-30
Identities = 70/188 (37%), Positives = 106/188 (56%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCD+GFG A+ D GF V+A L G+ L+A S RL + +D+
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLHTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + V YR +EVN FG + +
Sbjct: 85 TDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVEVNLFGLISV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GRI+ VSS G + F Y SK AV DS +++ +GV V+
Sbjct: 145 TLNMLPLVKKARGRIINVSSIGGRLAFGG-GGYSPSKYAVEGFNDSLRRDMKAFGVHVAC 203
Query: 912 IQPACFRT 935
I+P F+T
Sbjct: 204 IEPGLFKT 211
Score = 25.4 bits (54), Expect(2) = 3e-30
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 989 HSAPELLQAYGEDYIE 1036
H +P++ Q YGE YIE
Sbjct: 229 HLSPDIKQQYGESYIE 244
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 123 bits (308), Expect(2) = 3e-28
Identities = 73/183 (39%), Positives = 102/183 (55%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAEQLRNQTSDRLQTVILDVTKTDS 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
++ E+ K GLWGLVNNAG + A E + ++VN G +++T ++L
Sbjct: 90 VAAATEWVKERVGDRGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVNLLGVIDVTLSVL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL+R++ GR+V VSS G + Y SK V DS EL +GVKV +I+P
Sbjct: 150 PLVRKARGRVVNVSSIMGRVAL-LGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGY 208
Query: 927 FRT 935
F+T
Sbjct: 209 FKT 211
Score = 21.2 bits (43), Expect(2) = 3e-28
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 992 SAPELLQAYGEDYIEHLNGHFCTL*ARGCQ 1081
++PE+ + YGE ++ +L L CQ
Sbjct: 230 ASPEIKELYGEKFMANLMKSVDLLETTSCQ 259
>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos
taurus].
Length = 313
Score = 115 bits (288), Expect = 7e-26
Identities = 74/209 (35%), Positives = 110/209 (52%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
++ + V ITGCDSGFG A++L G VLA + GAQ+L+ S +L+ + +D+
Sbjct: 23 LSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKE--GAQKLQQDTSYQLQTILLDV 80
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
TK I ++ + GLW LVNNAG + E + + VN G +E+
Sbjct: 81 TKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVNLVGLIEV 140
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LP+++++ GR+V +SS G + Y SK V DS EL +GVKVS+
Sbjct: 141 TLHMLPMVKKARGRVVNMSSSGGRVAV-IGGGYCISKFGVEAFSDSIRRELHYFGVKVSI 199
Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLP 998
I+P FRT A+ D E+ R+L LP
Sbjct: 200 IEPGNFRT-AILGKDGLEKHMRKLWERLP 227
>ref|NP_001095835.1| estradiol 17-beta-dehydrogenase 1 [Bos taurus].
Length = 317
Score = 82.4 bits (202), Expect = 7e-16
Identities = 66/185 (35%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKL---DAMGFTVLATVLELDSPG----AQELRACCSPRLKLLQM 545
VLITGC SG G A +L + F V AT+ +L S G A + R C L+ LQ+
Sbjct: 6 VLITGCSSGIGLHLALRLASDPSQSFKVYATLRDLASQGPLLEAAQSRGCLPGSLETLQL 65
Query: 546 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725
D+ I+ + + LV NAG LV E + + ++VN GT+
Sbjct: 66 DVRDADSIAAA----QARVTEGRVDVLVCNAGRG-LVGPLEAHKEGSVDAVLDVNLTGTV 120
Query: 726 EMTKALLP-LLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVK 902
M +A LP + RR SGRI+ S G M P + Y SK A+ L +S + LQP+GV
Sbjct: 121 RMLQAFLPDMKRRRSGRILVTGSIGGLMALPFNAVYCASKFALEGLCESLAILLQPFGVH 180
Query: 903 VSVIQ 917
VS+I+
Sbjct: 181 VSLIE 185
>ref|XP_001253408.1| PREDICTED: hydroxysteroid (17-beta) dehydrogenase 1-like [Bos
taurus].
Length = 317
Score = 82.4 bits (202), Expect = 7e-16
Identities = 66/185 (35%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKL---DAMGFTVLATVLELDSPG----AQELRACCSPRLKLLQM 545
VLITGC SG G A +L + F V AT+ +L S G A + R C L+ LQ+
Sbjct: 6 VLITGCSSGIGLHLALRLASDPSQSFKVYATLRDLASQGPLLEAAQSRGCLPGSLETLQL 65
Query: 546 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725
D+ I+ + + LV NAG LV E + + ++VN GT+
Sbjct: 66 DVRDADSIAAA----QARVTEGRVDVLVCNAGRG-LVGPLEAHKEGSVDAVLDVNLTGTV 120
Query: 726 EMTKALLP-LLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVK 902
M +A LP + RR SGRI+ S G M P + Y SK A+ L +S + LQP+GV
Sbjct: 121 RMLQAFLPDMKRRRSGRILVTGSIGGLMALPFNAVYCASKFALEGLCESLAILLQPFGVH 180
Query: 903 VSVIQ 917
VS+I+
Sbjct: 181 VSLIE 185
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,399,142
Number of extensions: 1323644
Number of successful extensions: 5328
Number of sequences better than 1.0e-05: 32
Number of HSP's gapped: 5266
Number of HSP's successfully gapped: 36
Length of query: 374
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,240,222
Effective search space: 3844859940
Effective search space used: 3844859940
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007402
(1123 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 348 e-106
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 192 6e-49
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 145 9e-35
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 135 7e-32
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 130 2e-30
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 130 2e-30
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 123 2e-29
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 127 2e-29
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 127 3e-29
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 113 3e-25
>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2
(11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
(11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 323
Score = 348 bits (894), Expect(3) = e-106
Identities = 168/200 (84%), Positives = 184/200 (92%)
Frame = +3
Query: 402 CDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVL 581
CDSGFGK TAKKLDAMGFTVLATVLELD PGA ELRACCSPRL+LLQMDLTKPADISR L
Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67
Query: 582 EFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRR 761
EFTK HT+STGLWGLVNNAGHN +VAD ELSPVAT+RSCMEVNFFG LE+TK LLPLLRR
Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127
Query: 762 SSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFRTEA 941
S GRIVTV SPAGDMP+PCL+AYGTSKAA+ALLMD+FSCEL PWGVKVSVIQP CF+TE+
Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKTES 187
Query: 942 VKNVDQWEERKRQLLATLPQ 1001
V+NV WE+RK+ LLA+LP+
Sbjct: 188 VRNVGHWEQRKQLLLASLPR 207
Score = 38.9 bits (89), Expect(3) = e-106
Identities = 20/28 (71%), Positives = 21/28 (75%)
Frame = +1
Query: 1039 LEWAFLHSLSQGLPDLSPGVNAITDALL 1122
L FLHSL LPDLSP V+AITDALL
Sbjct: 221 LHGQFLHSLRLALPDLSPVVDAITDALL 248
Score = 38.1 bits (87), Expect(3) = e-106
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +2
Query: 1001 ELLQAYGEDYIEHLNGHF 1054
ELLQAYGEDYIEHL+G F
Sbjct: 208 ELLQAYGEDYIEHLHGQF 225
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
[Canis familiaris].
Length = 382
Score = 192 bits (487), Expect = 6e-49
Identities = 103/213 (48%), Positives = 130/213 (61%)
Frame = +3
Query: 348 LARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPR 527
L+ + LPV +AVLITG DSGFG A +K LD +GFTV VL+ GA+ELR CS R
Sbjct: 73 LSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVLDEKGSGAEELRRTCSKR 132
Query: 528 LKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEV 707
L +LQMD+T I GLW +VNNAG L AD EL P+ Y+ CM V
Sbjct: 133 LSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICLPADGELIPMTDYKKCMAV 192
Query: 708 NFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 887
NFFG +E+TKA LPLLR+S GR+V +SS A +P L+AY +SKAA+ + EL
Sbjct: 193 NFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELS 252
Query: 888 PWGVKVSVIQPACFRTEAVKNVDQWEERKRQLL 986
WGVKVSVIQP FRT + W + ++ +L
Sbjct: 253 KWGVKVSVIQPGGFRTNIAGTSEMWSKLEKNIL 285
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris].
Length = 299
Score = 145 bits (365), Expect = 9e-35
Identities = 82/190 (43%), Positives = 114/190 (60%), Gaps = 4/190 (2%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQM 545
V ++AVL+TGCDSGFG + AK L + GF V A L D G +EL S RL+ +Q+
Sbjct: 9 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRTIQL 68
Query: 546 DLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFG 719
++ K ++ RV+E + + G+WGLVNNAG + + E + + TY+ EVN +G
Sbjct: 69 NVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWG 127
Query: 720 TLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGV 899
T++MTKA LPL+RR+ GRIV +SS G M P S Y +K V D E+ P GV
Sbjct: 128 TVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 187
Query: 900 KVSVIQPACF 929
KVSV++P F
Sbjct: 188 KVSVVEPGNF 197
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris].
Length = 339
Score = 135 bits (340), Expect = 7e-32
Identities = 82/225 (36%), Positives = 120/225 (53%)
Frame = +3
Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
W L L Q LP + V ITGCDSGFG+ A +LD GF VLA+ L GA++L+
Sbjct: 33 WAVLWWLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQRGFRVLASC--LTPAGAEDLQ 90
Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
S RL +D+T+P + R ++ + H GL+GLVNNAG ++ +
Sbjct: 91 RVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWLTQDDF 150
Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
+ VN G + +T ALLPLL++S GR+V +SS G + Y SK + DS
Sbjct: 151 HRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAANG-GGYCVSKFGLEAFSDS 209
Query: 870 FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQS 1004
++ +GV+VS+++P FRT V N++ E ++ A LP S
Sbjct: 210 LRRDVAHFGVRVSIVEPGFFRT-PVTNLEHLENTLQECWARLPPS 253
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris].
Length = 317
Score = 130 bits (327), Expect = 2e-30
Identities = 83/204 (40%), Positives = 114/204 (55%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ + GLWGLVNNAG +E + Y +VN G +E+T ++L
Sbjct: 90 ILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVNLTGLIEVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PLLRR+ GRIV VSS G + F AY +SK V D+ EL+ +GVK+S+++P
Sbjct: 150 PLLRRARGRIVNVSSILGRLAF-FGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGY 208
Query: 927 FRTEAVKNVDQWEERKRQLLATLP 998
FRT + +V ER +Q +P
Sbjct: 209 FRT-GMTHVAWCLERLKQAWEEVP 231
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris].
Length = 323
Score = 130 bits (327), Expect = 2e-30
Identities = 83/204 (40%), Positives = 114/204 (55%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ + GLWGLVNNAG +E + Y +VN G +E+T ++L
Sbjct: 90 ILAATQWVEERVGDRGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVNLTGLIEVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PLLRR+ GRIV VSS G + F AY +SK V D+ EL+ +GVK+S+++P
Sbjct: 150 PLLRRARGRIVNVSSILGRLAF-FGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGY 208
Query: 927 FRTEAVKNVDQWEERKRQLLATLP 998
FRT + +V ER +Q +P
Sbjct: 209 FRT-GMTHVAWCLERLKQAWEEVP 231
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
[Canis familiaris].
Length = 753
Score = 123 bits (308), Expect(2) = 2e-29
Identities = 71/188 (37%), Positives = 104/188 (55%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCD+GFG A+ D GF V+A L A L+A S RL + +D+
Sbjct: 461 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESESTA--LKAETSERLHTVLLDV 518
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + V YR +EVN FG + +
Sbjct: 519 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISV 578
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T LLPL++++ GRI+ VSS G + Y SK AV DS +++ +GV VS
Sbjct: 579 TLNLLPLVKKARGRIINVSSIGGRLAISG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 637
Query: 912 IQPACFRT 935
I+P F+T
Sbjct: 638 IEPGLFKT 645
Score = 25.4 bits (54), Expect(2) = 2e-29
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 989 HSAPELLQAYGEDYIE 1036
H +P++ Q YGE YIE
Sbjct: 663 HLSPDIKQQYGESYIE 678
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 1 [Canis familiaris].
Length = 317
Score = 127 bits (318), Expect(2) = 2e-29
Identities = 77/183 (42%), Positives = 102/183 (55%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ + H GLWGLVNNAG + A E + ++VN G +E+T +LL
Sbjct: 90 ILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVNLLGLVEVTLSLL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
L+R++ GR+V VSS G + C Y SK V DS EL +GVKV+VI+P
Sbjct: 150 SLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGY 208
Query: 927 FRT 935
F T
Sbjct: 209 FST 211
Score = 21.2 bits (43), Expect(2) = 2e-29
Identities = 6/13 (46%), Positives = 12/13 (92%)
Frame = +2
Query: 995 APELLQAYGEDYI 1033
+PE+ +AYGE+++
Sbjct: 231 SPEVREAYGEEFL 243
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 2 [Canis familiaris].
Length = 319
Score = 127 bits (318), Expect = 3e-29
Identities = 77/183 (42%), Positives = 102/183 (55%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR+ S RL + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EKGAQQLRSQTSDRLDTVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ + H GLWGLVNNAG + A E + ++VN G +E+T +LL
Sbjct: 90 ILAATQWVEEHVGDRGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVNLLGLVEVTLSLL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
L+R++ GR+V VSS G + C Y SK V DS EL +GVKV+VI+P
Sbjct: 150 SLVRKARGRVVNVSSIMGRLSL-CGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGY 208
Query: 927 FRT 935
F T
Sbjct: 209 FST 211
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris].
Length = 313
Score = 113 bits (283), Expect = 3e-25
Identities = 73/210 (34%), Positives = 108/210 (51%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
++ + V ITGCDSGFG A++L G VLA + GAQ+L+ S RL+ +D+
Sbjct: 23 LSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEE--GAQKLQRDTSYRLQTTLLDV 80
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T+ I ++ + GLW LVNNAG + E + + VN G +E+
Sbjct: 81 TRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIEV 140
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LP+++++ GR+V +SS G + Y SK V DS EL +GVKVS+
Sbjct: 141 TLHMLPMVKKARGRVVNMSSSGGRVAL-IGGGYCVSKFGVEAFSDSIRRELHYFGVKVSI 199
Query: 912 IQPACFRTEAVKNVDQWEERKRQLLATLPQ 1001
I+P +RT + D R R+L LPQ
Sbjct: 200 IEPGNYRTSILGKEDM-VSRMRKLWERLPQ 228
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,886,295
Number of extensions: 1343166
Number of successful extensions: 5158
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 5068
Number of HSP's successfully gapped: 38
Length of query: 374
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 270
Effective length of database: 15,407,560
Effective search space: 4160041200
Effective search space used: 4160041200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007402
(1123 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000187.3| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 422 e-126
Alignment gi|NP_002144.1| estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. 198 9e-51
Alignment gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 143 3e-34
Alignment gi|NP_976059.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 143 3e-34
Alignment gi|NP_004042.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 143 3e-34
Alignment gi|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 pre... 137 1e-32
Alignment gi|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens]. 133 2e-31
Alignment gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ... 127 7e-30
Alignment gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 pre... 127 7e-30
Alignment gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ... 127 7e-30
>ref|NP_000187.3| corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens].
Length = 405
Score = 422 bits (1084), Expect(3) = e-126
Identities = 210/289 (72%), Positives = 224/289 (77%)
Frame = +3
Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
ME WPWPSGGAW DWLCQR
Sbjct: 1 MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCQRLLPPPAALAV 60
Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
GWIALSRLARPQRLPVATRAVLITGCDSGFGK TAKKLD+MGFTVLATVLEL+SPG
Sbjct: 61 LAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKETAKKLDSMGFTVLATVLELNSPG 120
Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
A ELR CCSPRL+LLQMDLTKP DISRVLEFTK HT STGLWGLVNNAGHN +VADAELS
Sbjct: 121 AIELRTCCSPRLRLLQMDLTKPGDISRVLEFTKAHTTSTGLWGLVNNAGHNEVVADAELS 180
Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
PVAT+RSCMEVNFFG LE+TK LLPLLR S GRIVTV SPAGDMP+PCL AYGTSKAAVA
Sbjct: 181 PVATFRSCMEVNFFGALELTKGLLPLLRSSRGRIVTVGSPAGDMPYPCLGAYGTSKAAVA 240
Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQ 1001
LLMD+FSCEL PWGVKVS+IQP CF+TE+V+NV QWE+RK+ LLA LPQ
Sbjct: 241 LLMDTFSCELLPWGVKVSIIQPGCFKTESVRNVGQWEKRKQLLLANLPQ 289
Score = 36.6 bits (83), Expect(3) = e-126
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 1001 ELLQAYGEDYIEHLNGHF 1054
ELLQAYG+DYIEHL+G F
Sbjct: 290 ELLQAYGKDYIEHLHGQF 307
Score = 33.9 bits (76), Expect(3) = e-126
Identities = 17/28 (60%), Positives = 20/28 (71%)
Frame = +1
Query: 1039 LEWAFLHSLSQGLPDLSPGVNAITDALL 1122
L FLHSL + DL+P V+AITDALL
Sbjct: 303 LHGQFLHSLRLAMSDLTPVVDAITDALL 330
>ref|NP_002144.1| estradiol 17-beta-dehydrogenase 2 [Homo sapiens].
Length = 387
Score = 198 bits (503), Expect = 9e-51
Identities = 103/217 (47%), Positives = 131/217 (60%)
Frame = +3
Query: 348 LARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPR 527
L+ + LPV +AVL+TG D G G A K LD +GFTV A VL + PGA+ELR CSPR
Sbjct: 72 LSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVLNENGPGAEELRRTCSPR 131
Query: 528 LKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEV 707
L +LQMD+TKP I GLW ++NNAG D EL + Y+ CM V
Sbjct: 132 LSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFPTDGELLLMTDYKQCMAV 191
Query: 708 NFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQ 887
NFFGT+E+TK LPLLR+S GR+V VSS G P L++YG+SKAAV + EL
Sbjct: 192 NFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLELS 251
Query: 888 PWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLP 998
WG+KV+ IQP F T D+WE+ ++ +L LP
Sbjct: 252 KWGIKVASIQPGGFLTNIAGTSDKWEKLEKDILDHLP 288
>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 143 bits (360), Expect = 3e-34
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +3
Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542
PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q
Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111
Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
+++ ++ +V+E + + G+WGLVNNAG + + E + + TY+ EVN +
Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170
Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
GT+ MTK+ LPL+RR+ GR+V +SS G M P S Y +K V D E+ P G
Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230
Query: 897 VKVSVIQPACF 929
VKVSV++P F
Sbjct: 231 VKVSVVEPGNF 241
>ref|NP_976059.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 143 bits (360), Expect = 3e-34
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +3
Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542
PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q
Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111
Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
+++ ++ +V+E + + G+WGLVNNAG + + E + + TY+ EVN +
Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170
Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
GT+ MTK+ LPL+RR+ GR+V +SS G M P S Y +K V D E+ P G
Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230
Query: 897 VKVSVIQPACF 929
VKVSV++P F
Sbjct: 231 VKVSVVEPGNF 241
>ref|NP_004042.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 143 bits (360), Expect = 3e-34
Identities = 79/191 (41%), Positives = 114/191 (59%), Gaps = 4/191 (2%)
Frame = +3
Query: 369 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 542
PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q
Sbjct: 52 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQ 111
Query: 543 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 716
+++ ++ +V+E + + G+WGLVNNAG + + E + + TY+ EVN +
Sbjct: 112 LNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTF-GEVEFTSLETYKQVAEVNLW 170
Query: 717 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWG 896
GT+ MTK+ LPL+RR+ GR+V +SS G M P S Y +K V D E+ P G
Sbjct: 171 GTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLG 230
Query: 897 VKVSVIQPACF 929
VKVSV++P F
Sbjct: 231 VKVSVVEPGNF 241
>ref|NP_003716.2| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Homo sapiens].
Length = 317
Score = 137 bits (346), Expect = 1e-32
Identities = 82/205 (40%), Positives = 116/205 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LDA G VLA L GA++LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDARGLRVLAACLT--EKGAEQLRGQTSDRLETVTLDVTKMES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I+ ++ K H GLWGLVNNAG + E + ++VN G +++T ++L
Sbjct: 90 IAAATQWVKEHVGDRGLWGLVNNAGILTPITLCEWLNTEDSMNMLKVNLIGVIQVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL+RR+ GRIV VSS G + F + Y SK V D E+Q +GVK+S+++P
Sbjct: 150 PLVRRARGRIVNVSSILGRVAF-FVGGYCVSKYGVEAFSDILRREIQHFGVKISIVEPGY 208
Query: 927 FRTEAVKNVDQWEERKRQLLATLPQ 1001
FRT + N+ Q ER +Q P+
Sbjct: 209 FRT-GMTNMTQSLERMKQSWKEAPK 232
>ref|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].
Length = 317
Score = 133 bits (334), Expect(2) = 2e-31
Identities = 78/187 (41%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFGK A++LDA G VLA L GA++LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGKLLARQLDARGLRVLAACLT--EKGAEQLRGQTSDRLETVTLDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
++ ++ K GLWGLVNNAG ++ A EL + + ++VN G +++T +LL
Sbjct: 90 VAAAAQWVKECVRDKGLWGLVNNAGISLPTAPNELLTKQDFVTILDVNLLGVIDVTLSLL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
PL+RR+ GR+V VSS G + C+S YG V DS EL +GVKV++I
Sbjct: 150 PLVRRARGRVVNVSSVMGRVSLFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAMI 204
Query: 915 QPACFRT 935
+P F+T
Sbjct: 205 EPGYFKT 211
Score = 21.9 bits (45), Expect(2) = 2e-31
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = +2
Query: 992 SAPELLQAYGEDYI 1033
S+PE+ +AYGE ++
Sbjct: 230 SSPEVKEAYGEKFV 243
>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 127 bits (318), Expect(2) = 7e-30
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCDSGFG A+ D GF V+A L G+ L+A S RL+ + +D+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + + YR +EVN FG + +
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GR++ VSS G + Y SK AV DS +++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 912 IQPACFRT---EAVKNVDQ----WEE 968
I+P F+T + VK +++ WE+
Sbjct: 204 IEPGLFKTNLADPVKVIEKKLAIWEQ 229
Score = 22.7 bits (47), Expect(2) = 7e-30
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 995 APELLQAYGEDYIE 1036
+P++ Q YGE YIE
Sbjct: 231 SPDIKQQYGEGYIE 244
>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 127 bits (318), Expect(2) = 7e-30
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCDSGFG A+ D GF V+A L G+ L+A S RL+ + +D+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + + YR +EVN FG + +
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GR++ VSS G + Y SK AV DS +++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 912 IQPACFRT---EAVKNVDQ----WEE 968
I+P F+T + VK +++ WE+
Sbjct: 204 IEPGLFKTNLADPVKVIEKKLAIWEQ 229
Score = 22.7 bits (47), Expect(2) = 7e-30
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 995 APELLQAYGEDYIE 1036
+P++ Q YGE YIE
Sbjct: 231 SPDIKQQYGEGYIE 244
>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 precursor [Homo
sapiens].
Length = 319
Score = 127 bits (318), Expect(2) = 7e-30
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 7/206 (3%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCDSGFG A+ D GF V+A L G+ L+A S RL+ + +D+
Sbjct: 27 ITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLRTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + + YR +EVN FG + +
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVNLFGLISV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GR++ VSS G + Y SK AV DS +++ +GV VS
Sbjct: 145 TLNMLPLVKKAQGRVINVSSVGGRLAI-VGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 912 IQPACFRT---EAVKNVDQ----WEE 968
I+P F+T + VK +++ WE+
Sbjct: 204 IEPGLFKTNLADPVKVIEKKLAIWEQ 229
Score = 22.7 bits (47), Expect(2) = 7e-30
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 995 APELLQAYGEDYIE 1036
+P++ Q YGE YIE
Sbjct: 231 SPDIKQQYGEGYIE 244
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,196,395
Number of extensions: 1326176
Number of successful extensions: 5492
Number of sequences better than 1.0e-05: 42
Number of HSP's gapped: 5408
Number of HSP's successfully gapped: 49
Length of query: 374
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 270
Effective length of database: 14,868,908
Effective search space: 4014605160
Effective search space used: 4014605160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007402
(1123 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032315.2| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 398 e-119
Alignment gi|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus]. 199 2e-51
Alignment gi|NP_780721.1| dehydrogenase/reductase SDR family member 9 pre... 134 1e-32
Alignment gi|NP_001116155.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 134 1e-31
Alignment gi|NP_780386.3| D-beta-hydroxybutyrate dehydrogenase, mitochond... 134 1e-31
Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]. 132 5e-31
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 129 5e-30
Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]. 128 7e-30
Alignment gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul... 127 1e-29
Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]. 127 2e-29
>ref|NP_032315.2| corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus].
Length = 386
Score = 398 bits (1022), Expect(3) = e-119
Identities = 198/289 (68%), Positives = 218/289 (75%)
Frame = +3
Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
ME WPWPSGGAW DWLCQR
Sbjct: 1 MERWPWPSGGAWLLVAARALLQLLRSDLRLGRPLLAALALLAALDWLCQRLLPPPAALVV 60
Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
GWIALSRLARP RLPVATRAVLITGCD+GFGK TAKKLDAMGFTVLATVL+L+SPG
Sbjct: 61 LAGAGWIALSRLARPPRLPVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVLDLNSPG 120
Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
A ELR CSPRLKLLQMDLTK DISRVLE TK HTASTGLWGLVNNAG NI+VAD ELS
Sbjct: 121 ALELRDLCSPRLKLLQMDLTKAEDISRVLEITKAHTASTGLWGLVNNAGLNIVVADVELS 180
Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
PVAT+R CMEVNFFG LE+TK LLPLLR S GRIVTV SPAGDMP+PCL+AYGTSKAA+A
Sbjct: 181 PVATFRKCMEVNFFGALELTKGLLPLLRHSRGRIVTVGSPAGDMPYPCLAAYGTSKAAIA 240
Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQ 1001
LLMD+F CEL PWG+KVS+I+P CF+T+AV NV+ WE+RK+ LLA +P+
Sbjct: 241 LLMDTFGCELLPWGIKVSIIKPGCFKTDAVTNVNLWEKRKQLLLANIPR 289
Score = 37.0 bits (84), Expect(3) = e-119
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +2
Query: 1001 ELLQAYGEDYIEHLNGHF 1054
ELLQAYGEDYIEH++G F
Sbjct: 290 ELLQAYGEDYIEHVHGQF 307
Score = 34.3 bits (77), Expect(3) = e-119
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = +1
Query: 1051 FLHSLSQGLPDLSPGVNAITDALL 1122
FL+SL LPDLSP V+AI DALL
Sbjct: 307 FLNSLRMALPDLSPVVDAIIDALL 330
>ref|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus].
Length = 381
Score = 199 bits (507), Expect = 2e-51
Identities = 103/207 (49%), Positives = 131/207 (63%)
Frame = +3
Query: 366 LPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQM 545
LPV +AVL+TG DSGFG AK LD +GFTV A VL+ + PGA+ELR CS RL +LQM
Sbjct: 79 LPVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVLDKEGPGAEELRKHCSERLSVLQM 138
Query: 546 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725
D+TKP I GLW +VNNAG L D EL P++ YR CM VNFFGT+
Sbjct: 139 DVTKPEQIKDAHSKVTEKIQDKGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFFGTV 198
Query: 726 EMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKV 905
E+TKA LPLLR+S GR+V VSS G +P SAY +KAA+ + EL WGVKV
Sbjct: 199 EVTKAFLPLLRKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKV 258
Query: 906 SVIQPACFRTEAVKNVDQWEERKRQLL 986
I+P F+T + D W++ ++++L
Sbjct: 259 VTIKPGGFKTNITGSQDIWDKMEKEIL 285
>ref|NP_780721.1| dehydrogenase/reductase SDR family member 9 precursor [Mus
musculus].
Length = 319
Score = 134 bits (336), Expect(2) = 1e-32
Identities = 74/200 (37%), Positives = 113/200 (56%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+A + V ITGCD+GFG A+ D GF V+A L G+ L+A S RL + +D+
Sbjct: 27 IADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLT--ESGSAALKAKTSERLHTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ + ++ K H GLWGL+NNAG ++A + V YR +EVN FG + +
Sbjct: 85 TDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVNLFGLINV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GR++ VSS G + F Y SK AV DS +++ +GV VS
Sbjct: 145 TLNMLPLVKKARGRVINVSSIGGRLAFGG-GGYTPSKYAVEGFNDSLRRDMKAFGVHVSC 203
Query: 912 IQPACFRTEAVKNVDQWEER 971
I+P F+TE + E++
Sbjct: 204 IEPGLFKTELADPIKTTEKK 223
Score = 25.0 bits (53), Expect(2) = 1e-32
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 989 HSAPELLQAYGEDYIE 1036
H +P++ Q YGE YIE
Sbjct: 229 HLSPDIKQQYGEGYIE 244
>ref|NP_001116155.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 343
Score = 134 bits (338), Expect = 1e-31
Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Frame = +3
Query: 381 RAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQMDLT 554
+A+LITGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q+++
Sbjct: 56 KAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVC 115
Query: 555 KPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLE 728
++ + +E + + G+WGLVNNAG + + E + + TY+ EVN +GT+
Sbjct: 116 NSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWGTVR 174
Query: 729 MTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVS 908
TK+ LPLLRR+ GR+V +SS G M P S Y +K + D E+ P GVKVS
Sbjct: 175 TTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVS 234
Query: 909 VIQPACF 929
V++P F
Sbjct: 235 VVEPGNF 241
>ref|NP_780386.3| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 343
Score = 134 bits (338), Expect = 1e-31
Identities = 75/187 (40%), Positives = 109/187 (58%), Gaps = 4/187 (2%)
Frame = +3
Query: 381 RAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQMDLT 554
+A+LITGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q+++
Sbjct: 56 KAILITGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVC 115
Query: 555 KPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLE 728
++ + +E + + G+WGLVNNAG + + E + + TY+ EVN +GT+
Sbjct: 116 NSEEVEKAVETIRSGLKDPEKGMWGLVNNAGISTF-GEVEFTSMETYKEVAEVNLWGTVR 174
Query: 729 MTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVS 908
TK+ LPLLRR+ GR+V +SS G M P S Y +K + D E+ P GVKVS
Sbjct: 175 TTKSFLPLLRRAKGRVVNISSMLGRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVS 234
Query: 909 VIQPACF 929
V++P F
Sbjct: 235 VVEPGNF 241
>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus].
Length = 318
Score = 132 bits (332), Expect = 5e-31
Identities = 80/223 (35%), Positives = 120/223 (53%)
Frame = +3
Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
W L L Q LP + + ITGCDSGFG+ A +LD GF VLA L GA++L+
Sbjct: 12 WAVLWLLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCLT--PSGAEDLQ 69
Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
S RL +D+T P ++ +V ++ K TGL+GLVNNAG ++ +
Sbjct: 70 QMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGPTPWLTQDDF 129
Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
+ + VN G + +T ALLPLL+++ GR+V ++S G + Y SK + DS
Sbjct: 130 QRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANG-GGYCVSKFGLEAFSDS 188
Query: 870 FSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLP 998
++ P+GV+VS+++P FRT V N++ E + A LP
Sbjct: 189 LRRDMAPFGVQVSIVEPGFFRT-PVTNLESLESTLKACWARLP 230
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 129 bits (323), Expect = 5e-30
Identities = 74/183 (40%), Positives = 104/183 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ K + GLWGLVNNAG ++ + ++ + S ++VN G +E+T +L
Sbjct: 90 IVAATQWVKERVGNRGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVNLLGMIEVTLTML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL+R++ GR+V VSS G + Y SK V DS EL +GVKV++I+P
Sbjct: 150 PLVRKARGRVVNVSSIMGRVSLHGNGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGF 209
Query: 927 FRT 935
F T
Sbjct: 210 FLT 212
>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].
Length = 317
Score = 128 bits (322), Expect = 7e-30
Identities = 75/183 (40%), Positives = 104/183 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ K + GLWGLVNNAG +I E + ++VN G +E+T ++L
Sbjct: 90 IVTATQWVKERVGNRGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVNLLGLIEVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL+R++ GR++ V+S G + C AY SK V DS EL +GVKV++I+P
Sbjct: 150 PLVRKARGRVINVASVLGRVSL-CGGAYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGF 208
Query: 927 FRT 935
F T
Sbjct: 209 FLT 211
>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
Length = 317
Score = 127 bits (320), Expect = 1e-29
Identities = 77/187 (41%), Positives = 105/187 (56%), Gaps = 4/187 (2%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GA+ELR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEELRNKTSDRLETVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ K + GLWGLVNNAG + E + ++VN G +E+T ++L
Sbjct: 90 IVAATQWVKERVGNRGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVNLLGMIEVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
PL+R++ GR+V VSS G M F C+S YG V DS EL +GVKV++I
Sbjct: 150 PLVRKARGRVVNVSSVMGRMSFFGGGYCISKYG-----VEAFSDSLRRELSYFGVKVAII 204
Query: 915 QPACFRT 935
+P F+T
Sbjct: 205 EPGGFKT 211
>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus].
Length = 316
Score = 127 bits (318), Expect = 2e-29
Identities = 76/193 (39%), Positives = 109/193 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GA++LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDRRGMRVLAACLT--EKGAEQLRNKTSDRLETVILDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I ++ K + GLWGLVNNAG + + L + + ++VN G +E+T ++L
Sbjct: 90 IVAATQWVKERVGNRGLWGLVNNAGICVFAINEWLKK-EDFANILDVNLLGMIEVTLSML 148
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL+R++ GR+V +SS G + C Y SK V DS E+ +GVKV++I+P
Sbjct: 149 PLVRKARGRVVNISSSMGRVSL-CGGGYCISKYGVEAFSDSLRREISYFGVKVAIIEPGG 207
Query: 927 FRTEAVKNVDQWE 965
FRT NV +E
Sbjct: 208 FRT----NVSNYE 216
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,222,881
Number of extensions: 1110722
Number of successful extensions: 4355
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 4265
Number of HSP's successfully gapped: 42
Length of query: 374
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 271
Effective length of database: 12,523,851
Effective search space: 3393963621
Effective search space used: 3393963621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007402
(1123 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999078.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 477 e-147
Alignment gi|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrof... 182 2e-46
Alignment gi|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 138 6e-33
Alignment gi|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogen... 138 6e-33
Alignment gi|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like... 132 3e-31
Alignment gi|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus sc... 130 1e-30
Alignment gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil... 126 2e-30
Alignment gi|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR famil... 126 2e-30
Alignment gi|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Su... 126 2e-29
Alignment gi|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like iso... 125 6e-29
>ref|NP_999078.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa].
Length = 400
Score = 477 bits (1228), Expect(3) = e-147
Identities = 243/289 (84%), Positives = 243/289 (84%)
Frame = +3
Query: 135 MESWPWPSGGAWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDWLCQRXXXXXXXXXX 314
MESWPWPSGGAW DWLCQR
Sbjct: 1 MESWPWPSGGAWLLVAARALLQLLRADLRLGRPLLAALALLAALDWLCQRLLPPLAALVV 60
Query: 315 XXXXGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 494
GWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG
Sbjct: 61 LAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPG 120
Query: 495 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 674
AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS
Sbjct: 121 AQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELS 180
Query: 675 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 854
PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA
Sbjct: 181 PVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVA 240
Query: 855 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQ 1001
LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQ
Sbjct: 241 LLMDSFSCELQPWGVKVSVIQPACFRTEAVKNVDQWEERKRQLLATLPQ 289
Score = 45.8 bits (107), Expect(3) = e-147
Identities = 23/28 (82%), Positives = 24/28 (85%)
Frame = +1
Query: 1039 LEWAFLHSLSQGLPDLSPGVNAITDALL 1122
L FLHSLSQGLPDLSP V+AITDALL
Sbjct: 303 LNGQFLHSLSQGLPDLSPVVDAITDALL 330
Score = 40.0 bits (92), Expect(3) = e-147
Identities = 17/18 (94%), Positives = 17/18 (94%)
Frame = +2
Query: 1001 ELLQAYGEDYIEHLNGHF 1054
ELLQAYGEDYIEHLNG F
Sbjct: 290 ELLQAYGEDYIEHLNGQF 307
>ref|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrofa].
Length = 388
Score = 182 bits (463), Expect = 2e-46
Identities = 97/210 (46%), Positives = 127/210 (60%)
Frame = +3
Query: 366 LPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQM 545
LPV +AVLITG DSG G A +K LD +GF V A VL+ GA+ELR CS L +LQ+
Sbjct: 79 LPVDQKAVLITGGDSGIGHALSKYLDKLGFIVFAGVLDEKGSGAEELRRTCSKHLSVLQL 138
Query: 546 DLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTL 725
D+T I + GLW +VNNAG D EL P+ Y+ CM VNFFG +
Sbjct: 139 DITNSQQIRDAHSKVMEKVQNRGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFFGAV 198
Query: 726 EMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKV 905
E+TKA LPLLR+S GR+V +SS AG +P ++AY ++KAA+ + EL WGVKV
Sbjct: 199 EVTKAFLPLLRKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKV 258
Query: 906 SVIQPACFRTEAVKNVDQWEERKRQLLATL 995
SVIQP F+T D W++ ++ +L L
Sbjct: 259 SVIQPGSFQTNIAGTSDLWDKLEKNILDDL 288
>ref|XP_003355508.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform
2 [Sus scrofa].
Length = 337
Score = 138 bits (347), Expect = 6e-33
Identities = 82/204 (40%), Positives = 116/204 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK
Sbjct: 52 VFITGCDSGFGNLLARQLDVRGLRVLAACLT--EQGAQQLRKQTSDRLETVLLDVTKTES 109
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I+ ++ K GLWGLVNNAG + E T+ ++VN G E+T ++L
Sbjct: 110 IAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSML 169
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL++++ GRIV VSS G + F + Y +SK V D CELQ +GVKVS+++P
Sbjct: 170 PLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGY 228
Query: 927 FRTEAVKNVDQWEERKRQLLATLP 998
FRT + +V + E +Q+ +P
Sbjct: 229 FRT-GMTDVQKSSEAMKQVWKEVP 251
>ref|XP_003355507.1| PREDICTED: 17-beta-hydroxysteroid dehydrogenase type 6-like isoform
1 [Sus scrofa].
Length = 317
Score = 138 bits (347), Expect = 6e-33
Identities = 82/204 (40%), Positives = 116/204 (56%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDVRGLRVLAACLT--EQGAQQLRKQTSDRLETVLLDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
I+ ++ K GLWGLVNNAG + E T+ ++VN G E+T ++L
Sbjct: 90 IAAATQWVKERVGDRGLWGLVNNAGTFHPLCITEWLKTETWIHTLKVNLIGVTEVTLSML 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPAC 926
PL++++ GRIV VSS G + F + Y +SK V D CELQ +GVKVS+++P
Sbjct: 150 PLVKKAQGRIVNVSSILGRVAF-FGAVYSSSKHGVEAFSDVLRCELQHFGVKVSIVEPGY 208
Query: 927 FRTEAVKNVDQWEERKRQLLATLP 998
FRT + +V + E +Q+ +P
Sbjct: 209 FRT-GMTDVQKSSEAMKQVWKEVP 231
>ref|XP_003126302.1| PREDICTED: 11-cis retinol dehydrogenase-like [Sus scrofa].
Length = 318
Score = 132 bits (333), Expect = 3e-31
Identities = 77/202 (38%), Positives = 110/202 (54%)
Frame = +3
Query: 330 WIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELR 509
W L L Q LP + V ITGCDSGFG+ A +LD GF VLA+ L GA++L+
Sbjct: 12 WALLWLLRDRQSLPTSDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLT--PSGAEDLQ 69
Query: 510 ACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATY 689
S RL +D+T P I R ++ + H GL+GLVNNAG ++ +
Sbjct: 70 RVASSRLHTTLLDVTDPQSIQRAAKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDF 129
Query: 690 RSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDS 869
+ + VN G + +T ALLPLLR++ GR+V VSS G + Y SK V DS
Sbjct: 130 QQVLNVNTLGPIGVTLALLPLLRQARGRVVNVSSVLGRLAANG-GGYCVSKFGVEAFSDS 188
Query: 870 FSCELQPWGVKVSVIQPACFRT 935
++ P+G++VS+++P F+T
Sbjct: 189 LRRDVAPFGIRVSIVEPGFFQT 210
>ref|NP_001230795.1| retinol dehydrogenase 16 (all-trans) [Sus scrofa].
Length = 317
Score = 130 bits (328), Expect = 1e-30
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 4/191 (2%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EQGAQQLRKQTSDRLETVLLDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
++ E+ K GLWGLVNNAG +++ A E + ++VN G +++T LL
Sbjct: 90 VAAAKEWVKERVGDRGLWGLVNNAGISVISAPNEWLTKQDFVKILDVNLLGMVDVTLQLL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
PL+R++ GR+V VSS G + CLS YG V DS EL +GVKV++I
Sbjct: 150 PLVRKTRGRVVNVSSVMGRVSLFGGGYCLSKYG-----VEAFSDSLRRELSYFGVKVAMI 204
Query: 915 QPACFRTEAVK 947
+P F+T K
Sbjct: 205 EPGFFKTNVTK 215
>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform
1 [Sus scrofa].
Length = 319
Score = 126 bits (316), Expect(2) = 2e-30
Identities = 71/200 (35%), Positives = 110/200 (55%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCD+GFG A+ D GF V+A L G+ L+A S RL + +D+
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLHTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + V YR +EVN FG + +
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GR++ VSS G + F Y SK AV DS +++ +GV V+
Sbjct: 145 TLNMLPLVKKARGRVINVSSIGGRLAFGG-GGYAPSKYAVEGFNDSLRRDMKAFGVHVAC 203
Query: 912 IQPACFRTEAVKNVDQWEER 971
I+P F+T V E++
Sbjct: 204 IEPGLFKTGLADPVKTAEKK 223
Score = 25.0 bits (53), Expect(2) = 2e-30
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 989 HSAPELLQAYGEDYIE 1036
H +P++ Q YGE YIE
Sbjct: 229 HLSPDIRQQYGEGYIE 244
>ref|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like,
partial [Sus scrofa].
Length = 245
Score = 126 bits (316), Expect(2) = 2e-30
Identities = 71/200 (35%), Positives = 110/200 (55%)
Frame = +3
Query: 372 VATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDL 551
+ + + ITGCD+GFG A+ D GF V+A L G+ L+A S RL + +D+
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLT--ESGSTALKAETSERLHTVLLDV 84
Query: 552 TKPADISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEM 731
T P ++ R ++ K GLWGL+NNAG ++A + V YR +EVN FG + +
Sbjct: 85 TDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINV 144
Query: 732 TKALLPLLRRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSV 911
T +LPL++++ GR++ VSS G + F Y SK AV DS +++ +GV V+
Sbjct: 145 TLNMLPLVKKARGRVINVSSIGGRLAFGG-GGYAPSKYAVEGFNDSLRRDMKAFGVHVAC 203
Query: 912 IQPACFRTEAVKNVDQWEER 971
I+P F+T V E++
Sbjct: 204 IEPGLFKTGLADPVKTAEKK 223
Score = 25.0 bits (53), Expect(2) = 2e-30
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 989 HSAPELLQAYGEDYIE 1036
H +P++ Q YGE YIE
Sbjct: 229 HLSPDIRQQYGEGYIE 244
>ref|XP_003355529.1| PREDICTED: retinol dehydrogenase 16-like [Sus scrofa].
Length = 317
Score = 126 bits (317), Expect = 2e-29
Identities = 78/187 (41%), Positives = 104/187 (55%), Gaps = 4/187 (2%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EQGAQQLRKQTSDRLETVLLDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
++ E+ K GLWGLVNNAG +A +E + ++VN G +++T LL
Sbjct: 90 VAAAKEWVKERVGDRGLWGLVNNAGICTPLAPSEWLTKQDFMVMLDVNLLGMVDVTLQLL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
PL+R++ GR+V VSS G + CLS YG V DS EL +GVKV+VI
Sbjct: 150 PLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYG-----VEAFSDSLRRELSYFGVKVAVI 204
Query: 915 QPACFRT 935
+P F T
Sbjct: 205 EPGFFMT 211
>ref|XP_003355528.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
Length = 317
Score = 125 bits (313), Expect = 6e-29
Identities = 77/187 (41%), Positives = 104/187 (55%), Gaps = 4/187 (2%)
Frame = +3
Query: 387 VLITGCDSGFGKATAKKLDAMGFTVLATVLELDSPGAQELRACCSPRLKLLQMDLTKPAD 566
V ITGCDSGFG A++LD G VLA L GAQ+LR S RL+ + +D+TK
Sbjct: 32 VFITGCDSGFGNLLARQLDLRGLRVLAACLT--EQGAQQLRKQTSDRLETVLLDVTKTES 89
Query: 567 ISRVLEFTKVHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFFGTLEMTKALL 746
++ E+ K GLWGLVNNAG + +A E + ++VN G +++T LL
Sbjct: 90 VAAAKEWVKERVGDRGLWGLVNNAGICMPLAPNEWLTKQDFMVMLDVNLLGMVDVTLQLL 149
Query: 747 PLLRRSSGRIVTVSSPAGDMPF----PCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVI 914
PL+R++ GR+V VSS G + CLS YG V DS EL +GVKV++I
Sbjct: 150 PLVRKTKGRVVNVSSVMGRVSLFGGGYCLSKYG-----VEAFSDSLRRELSYFGVKVAMI 204
Query: 915 QPACFRT 935
+P F T
Sbjct: 205 EPGFFMT 211
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,655,116
Number of extensions: 856296
Number of successful extensions: 3439
Number of sequences better than 1.0e-05: 31
Number of HSP's gapped: 3384
Number of HSP's successfully gapped: 35
Length of query: 374
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,854,232
Effective search space: 2426059568
Effective search space used: 2426059568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007402
(1123 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 422 e-115
>Sscrofa_Chr06
|| Length = 157765593
Score = 422 bits (213), Expect = e-115
Identities = 216/217 (99%)
Strand = Plus / Plus
Query: 399 ggctgtgactccggttttggcaaagcgactgccaagaagctggacgccatgggcttcaca 458
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 25354868 ggctgtgactccggttttggcaaagcgactgccaagaagctggatgccatgggcttcaca 25354927
Query: 459 gtgctggccaccgtgttggagttggatagccctggtgcccaagagctgcgtgcttgctgt 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25354928 gtgctggccaccgtgttggagttggatagccctggtgcccaagagctgcgtgcttgctgt 25354987
Query: 519 tcccctcgtctgaagttgctgcagatggacctgaccaagccagcagacattagccgcgtg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25354988 tcccctcgtctgaagttgctgcagatggacctgaccaagccagcagacattagccgcgtg 25355047
Query: 579 ctggagttcaccaaggtccacactgccagcacaggtc 615
|||||||||||||||||||||||||||||||||||||
Sbjct: 25355048 ctggagttcaccaaggtccacactgccagcacaggtc 25355084
Score = 335 bits (169), Expect = 3e-89
Identities = 183/190 (96%)
Strand = Plus / Plus
Query: 610 caggtctgtggggcctggtcaacaatgcaggccacaacatccttgtggcagatgcagagc 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25355194 caggtctgtggggcctggtcaacaatgcaggccacaacatccttgtggcagatgcagagc 25355253
Query: 670 tgtctccagtggccacgtaccgcagctgcatggaggtgaannnnnnnggtacccttgaga 729
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25355254 tgtctccagtggccacgtaccgcagctgcatggaggtgaatttttttggtacccttgaga 25355313
Query: 730 tgaccaaagccctcttgccactgctgcgccggtcgagcggtcgcattgtgactgtgagca 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25355314 tgaccaaagccctcttgccactgctgcgccggtcgagcggtcgcattgtgactgtgagca 25355373
Query: 790 gtccagcagg 799
||||||||||
Sbjct: 25355374 gtccagcagg 25355383
Score = 323 bits (163), Expect = 1e-85
Identities = 183/187 (97%), Gaps = 2/187 (1%)
Strand = Plus / Plus
Query: 939 gcagtgaaaaacgtggaccagtgggaagagcgcaagcggcagctgctggccactctgccc 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25355830 gcagtgaaaaacgtggaccagtgggaagagcgcaagcggcagctgctggccactctgccc 25355889
Query: 999 ca-gagctgctacaggcctatggtgaggactacatcgagcacttgaatgggca-tttctg 1056
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 25355890 caagagctgctacaggcctatggtgaggactacatcgagcacttgaatgggcaatttctg 25355949
Query: 1057 cactctctgagccaggggctgccagacctcagcccgggtgtaaatgccatcactgacgca 1116
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 25355950 cactctctgagccaggggctgccagacctcagcccggttgtagatgccatcactgacgca 25356009
Query: 1117 ctgctgg 1123
|||||||
Sbjct: 25356010 ctgctgg 25356016
Score = 291 bits (147), Expect = 4e-76
Identities = 147/147 (100%)
Strand = Plus / Plus
Query: 254 tctggccgcgctcgactggctgtgccagcgcctgctgcccccgctggccgcacttgtcgt 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25351361 tctggccgcgctcgactggctgtgccagcgcctgctgcccccgctggccgcacttgtcgt 25351420
Query: 314 gctggctgccgcgggttggatcgcgttgtcccgcttggcgcggccgcaacgcctgccggt 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25351421 gctggctgccgcgggttggatcgcgttgtcccgcttggcgcggccgcaacgcctgccggt 25351480
Query: 374 ggcgactcgcgcggtgctcatcaccgg 400
|||||||||||||||||||||||||||
Sbjct: 25351481 ggcgactcgcgcggtgctcatcaccgg 25351507
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Plus
Query: 796 caggagatatgccatttccgtgcttgtctgcctacgggacctccaaagcggctgtggcat 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25355487 caggagatatgccatttccgtgcttgtctgcctacgggacctccaaagcggctgtggcat 25355546
Query: 856 tgctcatggactctttcagctgtgaacttcagccctggggggtcaaggtcagcgtcatcc 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25355547 tgctcatggactctttcagctgtgaacttcagccctggggggtcaaggtcagcgtcatcc 25355606
Query: 916 agcctgcctgcttcaggacgg 936
|||||||||||||||||||||
Sbjct: 25355607 agcctgcctgcttcaggacgg 25355627
Score = 149 bits (75), Expect = 4e-33
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 113 gacccaaaccggcccagacgccatggagagctggccctggccgtcgggcggcgcctggct 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25351220 gacccaaaccggcccagacgccatggagagctggccctggccgtcgggcggcgcctggct 25351279
Query: 173 gctcgtggcggcccg 187
|||||||||||||||
Sbjct: 25351280 gctcgtggcggcccg 25351294
Score = 67.9 bits (34), Expect = 1e-08
Identities = 41/42 (97%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 4 aaagccagtatccttttcgcccctggatcgtgttctgctgca 45
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 25351113 aaagccagtatc-ttttcgcccctggatcgtgttctgctgca 25351153
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,596,304
Number of extensions: 145
Number of successful extensions: 145
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 7
Length of query: 1123
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1102
Effective length of database: 2,808,413,156
Effective search space: 3094871297912
Effective search space used: 3094871297912
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)