Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007404
(1128 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095454.1| fatty aldehyde dehydrogenase [Bos taurus]. 449 e-141
Alignment gi|NP_001159985.1| aldehyde dehydrogenase, dimeric NADP-preferr... 365 e-112
Alignment gi|XP_002699413.1| PREDICTED: similar to aldehyde dehydrogenase... 263 1e-79
Alignment gi|XP_585724.2| PREDICTED: similar to aldehyde dehydrogenase 3B... 263 1e-79
Alignment gi|NP_001068986.1| aldehyde dehydrogenase family 3 member B1 [B... 263 2e-79
Alignment gi|XP_001252548.2| PREDICTED: aldehyde dehydrogenase family 3 m... 127 1e-29
Alignment gi|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 s... 94 2e-24
Alignment gi|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subf... 94 2e-24
Alignment gi|NP_776664.1| retinal dehydrogenase 1 [Bos taurus]. 92 5e-23
Alignment gi|NP_001178320.1| aldehyde dehydrogenase 1 family, member L2 [... 94 4e-22
>ref|NP_001095454.1| fatty aldehyde dehydrogenase [Bos taurus].
Length = 485
Score = 449 bits (1155), Expect(2) = e-141
Identities = 221/304 (72%), Positives = 248/304 (81%)
Frame = +3
Query: 45 MEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQE 224
MEREVQR+RAAF +GRS ERE+ NAYSQE
Sbjct: 1 MEREVQRVRAAFGSGRSRPLTFRRRQLEALRVMVQEREKDILAAIGADLSKSEFNAYSQE 60
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 404
V+T+LGEIDL LEKLPEWAAA+PA++NLLTMLDEAY+QPEPLGV+LIIGAWNYP L+IQ
Sbjct: 61 VITVLGEIDLMLEKLPEWAAAKPAQRNLLTMLDEAYIQPEPLGVVLIIGAWNYPFALTIQ 120
Query: 405 PLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 584
PL KPSE+SENTAK+LAKLLPQYLDQDLYAV+ GGVEETT+LL+QRFDH
Sbjct: 121 PLIGAIAAGNAVIIKPSEVSENTAKLLAKLLPQYLDQDLYAVVTGGVEETTELLKQRFDH 180
Query: 585 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
ILYTG+T VGKIVM+AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MNCGQT
Sbjct: 181 ILYTGNTTVGKIVMQAAAKHLTPVTLELGGKSPCYVDRDCDLDVACRRIAWGKFMNCGQT 240
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
CIAPDYVLCEPSLQD +VQK++EAVK FYG+N+K+SPDYERIVNLRHF+RIQSLLEGQKI
Sbjct: 241 CIAPDYVLCEPSLQDLIVQKVQEAVKGFYGENVKESPDYERIVNLRHFKRIQSLLEGQKI 300
Query: 945 PFVG 956
F G
Sbjct: 301 AFGG 304
Score = 72.0 bits (175), Expect(2) = e-141
Identities = 32/49 (65%), Positives = 41/49 (83%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PTILTDVDP KVM+EEIFGP+LPI+P KNA++ + IN+RE+P FY
Sbjct: 314 APTILTDVDPGTKVMQEEIFGPILPIVPVKNADEAIQFINEREKPLAFY 362
>ref|NP_001159985.1| aldehyde dehydrogenase, dimeric NADP-preferring [Bos taurus].
Length = 453
Score = 365 bits (936), Expect(2) = e-112
Identities = 175/305 (57%), Positives = 218/305 (71%)
Frame = +3
Query: 42 AMEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQ 221
A+ VQR RAAF +GR+ ERE+ AY +
Sbjct: 3 AISEVVQRARAAFNSGRTRPLQFRVQQLEGLRRLIREREKDLVGALAADLHKNEWTAYYE 62
Query: 222 EVLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSI 401
E++ +L EID + KLPEWAA P EK T DEAY+ EPLGV+LIIG+WNYP L+I
Sbjct: 63 EIVYVLEEIDYMIRKLPEWAADEPVEKTPHTQQDEAYIHSEPLGVVLIIGSWNYPFNLTI 122
Query: 402 QPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFD 581
QP+ KPSE+SENTA +LA +LPQYLDQDLY VINGGV ETT++L++RFD
Sbjct: 123 QPMVGAIAAGNAVVLKPSELSENTASLLATILPQYLDQDLYPVINGGVAETTEVLKERFD 182
Query: 582 HILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQ 761
HIL+TGST VG++VM AAAKHLTPVTLELGGK+PCY+D DCDLD+ACRRIAWGK+MN GQ
Sbjct: 183 HILFTGSTGVGRVVMMAAAKHLTPVTLELGGKNPCYVDKDCDLDIACRRIAWGKFMNSGQ 242
Query: 762 TCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
TC+APDY+LC+PS+Q QVV+K+K+++KEFYG++ K S DY RI+N RHFQR+ LLEGQK
Sbjct: 243 TCVAPDYILCDPSIQSQVVEKLKKSLKEFYGEDAKKSRDYGRIINSRHFQRVMGLLEGQK 302
Query: 942 IPFVG 956
+ + G
Sbjct: 303 VTYGG 307
Score = 61.6 bits (148), Expect(2) = e-112
Identities = 30/62 (48%), Positives = 41/62 (66%)
Frame = +1
Query: 943 YPSWGDGRSHSLHSPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPG 1122
Y GD + + +PTILTDVDPE VM+EE+FGP+LPIM ++ + + I QRE+P
Sbjct: 305 YGGTGDATTRYI-APTILTDVDPESPVMQEEVFGPVLPIMCVRSLEEAIQFITQREKPLA 363
Query: 1123 FY 1128
Y
Sbjct: 364 LY 365
>ref|XP_002699413.1| PREDICTED: similar to aldehyde dehydrogenase 3B1 [Bos taurus].
Length = 486
Score = 263 bits (673), Expect(2) = 1e-79
Identities = 130/301 (43%), Positives = 184/301 (61%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF +GR+ E ++ ++ E++
Sbjct: 28 LQRLREAFVSGRTRPAKFRAAQLKGLSLFLQENKQLLQEALAQDLYKTAFHSEVSELILC 87
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
++D AL L W P KNL+T LD +++ EP G++LI+ WNYPL LS+ PL
Sbjct: 88 QNQVDFALRNLHTWMKDEPGAKNLMTQLDSVFIRKEPFGLVLILSPWNYPLNLSLGPLVG 147
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS++T K+LAK+LP+YLDQ +AV+ GG EET +LLE +FD+I +T
Sbjct: 148 ALAAGNCVVLKPSEISKSTMKVLAKVLPRYLDQSCFAVVLGGPEETGRLLEHKFDYIFFT 207
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+A+ + N GQTC+AP
Sbjct: 208 GSPRVGKIVMAAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFNTGQTCVAP 267
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DYVLC P +Q ++V ++ A+ FYG++ + SPD RI++ +HFQR++ LL ++ G
Sbjct: 268 DYVLCSPEMQAKLVPALQSAITRFYGNDPQRSPDLGRIISQKHFQRLRGLLSCGRVVIGG 327
Query: 957 R 959
+
Sbjct: 328 Q 328
Score = 52.4 bits (124), Expect(2) = 1e-79
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ +Q ++ IN+RE+P Y
Sbjct: 337 APTVLVDVKETEPVMQEEIFGPILPIVNVRSLDQAIDFINRREKPLALY 385
>ref|XP_585724.2| PREDICTED: similar to aldehyde dehydrogenase 3B1 isoform 1 [Bos
taurus].
Length = 486
Score = 263 bits (673), Expect(2) = 1e-79
Identities = 130/301 (43%), Positives = 184/301 (61%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF +GR+ E ++ ++ E++
Sbjct: 28 LQRLREAFVSGRTRPAKFRAAQLKGLSLFLQENKQLLQEALAQDLYKTAFHSEVSELILC 87
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
++D AL L W P KNL+T LD +++ EP G++LI+ WNYPL LS+ PL
Sbjct: 88 QNQVDFALRNLHTWMKDEPGAKNLMTQLDSVFIRKEPFGLVLILSPWNYPLNLSLGPLVG 147
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS++T K+LAK+LP+YLDQ +AV+ GG EET +LLE +FD+I +T
Sbjct: 148 ALAAGNCVVLKPSEISKSTMKVLAKVLPRYLDQSCFAVVLGGPEETGRLLEHKFDYIFFT 207
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+A+ + N GQTC+AP
Sbjct: 208 GSPRVGKIVMAAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFNTGQTCVAP 267
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DYVLC P +Q ++V ++ A+ FYG++ + SPD RI++ +HFQR++ LL ++ G
Sbjct: 268 DYVLCSPEMQAKLVPALQSAITRFYGNDPQRSPDLGRIISQKHFQRLRGLLSCGRVVIGG 327
Query: 957 R 959
+
Sbjct: 328 Q 328
Score = 52.4 bits (124), Expect(2) = 1e-79
Identities = 23/49 (46%), Positives = 35/49 (71%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ +Q ++ IN+RE+P Y
Sbjct: 337 APTVLVDVKETEPVMQEEIFGPILPIVNVRSLDQAIDFINRREKPLALY 385
>ref|NP_001068986.1| aldehyde dehydrogenase family 3 member B1 [Bos taurus].
Length = 468
Score = 263 bits (671), Expect(2) = 2e-79
Identities = 132/301 (43%), Positives = 182/301 (60%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF +GR+ E ++ A E+
Sbjct: 8 LQRLREAFVSGRTRPAEFRDAQLKGLSRFLRENKQLLQEALAQDLHKSAFEAEVSEISIS 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
EI+LAL L W KNL T LD A+++ EP G++LI+ WNYPL LS+ PL
Sbjct: 68 QNEINLALRNLRTWMKDEKVSKNLATQLDSAFIRKEPFGLVLILSPWNYPLNLSLGPLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS+NT K+LA++LP+YLDQ +AV+ GG +ET +LLE +FD+I +T
Sbjct: 128 ALAAGNCVVLKPSEISKNTEKVLAEVLPRYLDQSCFAVVLGGPQETGRLLEHKFDYIFFT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
G+ VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+A+ + N GQTC+AP
Sbjct: 188 GNPQVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAFFRCFNAGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DYVLC P +Q Q+V ++ A+ FYGD+ + SP+ RI++ +HFQR++ LL ++ G
Sbjct: 248 DYVLCSPEMQAQLVPALQSAITRFYGDDPQSSPNLGRIISQKHFQRLRGLLSCGRVVIGG 307
Query: 957 R 959
+
Sbjct: 308 Q 308
Score = 52.4 bits (124), Expect(2) = 2e-79
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ Q ++ IN+RE+P Y
Sbjct: 317 APTVLVDVQETDPVMQEEIFGPILPIVNVRSLGQAIDFINRREKPLALY 365
>ref|XP_001252548.2| PREDICTED: aldehyde dehydrogenase family 3 member B1-like [Bos
taurus].
Length = 198
Score = 127 bits (320), Expect = 1e-29
Identities = 71/191 (37%), Positives = 98/191 (51%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF +GR+ E ++ A E+
Sbjct: 8 LQRLREAFVSGRTRPAEFRDAQLKGLSRFLRENKQLLQEALAQDLHKSAFEAEVSEISIS 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
EI+LAL L W KNL T LD A+++ EP G++LI+ WNYPL LS+ PL
Sbjct: 68 QNEINLALRNLRTWMKDEKVSKNLATQLDSAFIRKEPFGLVLILSPWNYPLNLSLGPLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS+NT K+LA++LP+YLDQ +AV+ GG +ET +LLE +FD+I +T
Sbjct: 128 ALAAGNCVVLKPSEISKNTEKVLAEVLPRYLDQSCFAVVLGGPQETGRLLEHKFDYIFFT 187
Query: 597 GSTAVGKIVME 629
S + E
Sbjct: 188 VSHVTASALAE 198
>ref|XP_002696563.1| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 94.0 bits (232), Expect(2) = 2e-24
Identities = 71/211 (33%), Positives = 99/211 (46%), Gaps = 7/211 (3%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYL 509
+ + EP+GV I WN+PL++ + L KP+E + TA L L+ +
Sbjct: 190 FTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPAEQTPLTALYLGSLIKEVG 249
Query: 510 DQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
I G T HI +TGST VGK+V EAA+ +L VTLELGGK
Sbjct: 250 FPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGKLVKEAASHSNLKRVTLELGGK 309
Query: 678 SPCYI--DPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEF 848
+PC + D DCDL V C G + N GQ C A V E + D+ V++ E A K
Sbjct: 310 NPCIVCADADCDLAVECAH--QGVFFNQGQCCTAASRVFVEEQVYDEFVRRSVEYAKKRP 367
Query: 849 YGDNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
GD + ++ + F +I L+E K
Sbjct: 368 VGDPFDVRTEQGPQIDQKQFDKILDLIESGK 398
Score = 37.4 bits (85), Expect(2) = 2e-24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRE 1110
PT+ ++V ++ +EEIFGP+ PI+ KN + + N E
Sbjct: 420 PTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLE 461
>ref|XP_583647.3| PREDICTED: aldehyde dehydrogenase family 1 subfamily A3-like [Bos
taurus].
Length = 537
Score = 94.0 bits (232), Expect(2) = 2e-24
Identities = 71/211 (33%), Positives = 99/211 (46%), Gaps = 7/211 (3%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYL 509
+ + EP+GV I WN+PL++ + L KP+E + TA L L+ +
Sbjct: 190 FTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVLKPAEQTPLTALYLGSLIKEVG 249
Query: 510 DQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
I G T HI +TGST VGK+V EAA+ +L VTLELGGK
Sbjct: 250 FPPGVVNIVPGFGPTVGAAISSHPHINKIAFTGSTEVGKLVKEAASHSNLKRVTLELGGK 309
Query: 678 SPCYI--DPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEF 848
+PC + D DCDL V C G + N GQ C A V E + D+ V++ E A K
Sbjct: 310 NPCIVCADADCDLAVECAH--QGVFFNQGQCCTAASRVFVEEQVYDEFVRRSVEYAKKRP 367
Query: 849 YGDNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
GD + ++ + F +I L+E K
Sbjct: 368 VGDPFDVRTEQGPQIDQKQFDKILDLIESGK 398
Score = 37.4 bits (85), Expect(2) = 2e-24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRE 1110
PT+ ++V ++ +EEIFGP+ PI+ KN + + N E
Sbjct: 420 PTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLE 461
>ref|NP_776664.1| retinal dehydrogenase 1 [Bos taurus].
Length = 501
Score = 92.0 bits (227), Expect(2) = 5e-23
Identities = 65/222 (29%), Positives = 106/222 (47%), Gaps = 5/222 (2%)
Frame = +3
Query: 291 PAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISEN 470
P + N T Y + EP+GV I WN+PL++ + + KP+E +
Sbjct: 146 PMDGNFFT-----YTRSEPVGVCGQIIPWNFPLLMFLWKIGPALSCGNTVVVKPAEQTPL 200
Query: 471 TAKILAKLLPQY-LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAAK 641
TA + L+ + + ++ G + D + +TGST VGK++ EAA K
Sbjct: 201 TALHMGSLIKEAGFPPGVVNIVPGYGPTAGAAISSHMDVDKVAFTGSTEVGKLIKEAAGK 260
Query: 642 -HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVV 818
+L V+LELGGKSPC + D DLD A G + + GQ CIA + E S+ D+ V
Sbjct: 261 SNLKRVSLELGGKSPCIVFADADLDNAVEFAHQGVFYHQGQCCIAASRLFVEESIYDEFV 320
Query: 819 QKMKEAVKEF-YGDNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
++ E K++ G+ + ++ +++I L+E K
Sbjct: 321 RRSVERAKKYVLGNPLTPGVSQGPQIDKEQYEKILDLIESGK 362
Score = 34.7 bits (78), Expect(2) = 5e-23
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT+ +DV + ++ +EEIFGP+ IM K+ + + N
Sbjct: 384 PTVFSDVTDDMRIAKEEIFGPVQQIMKFKSLDDVIKRAN 422
>ref|NP_001178320.1| aldehyde dehydrogenase 1 family, member L2 [Bos taurus].
Length = 923
Score = 94.0 bits (232), Expect(2) = 4e-22
Identities = 68/223 (30%), Positives = 111/223 (49%), Gaps = 10/223 (4%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKL-LPQY 506
+ + EPLGV II WNYPL++ KP++++ TA A+L +
Sbjct: 579 FTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPLTALKFAELSVKAG 638
Query: 507 LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
+ + +I G + L + D + +TGST +GK +M++ A +L V+LELGGK
Sbjct: 639 FPKGVINIIPGSGGVVGQHLSEHPDIRKLGFTGSTLIGKQIMKSCAMSNLKKVSLELGGK 698
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YG 854
SP I DC+LD A R + N G+ CIA + E S+ D+ V +M E +K+ G
Sbjct: 699 SPLIIFSDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHDEFVTRMVEEIKKMKIG 758
Query: 855 DNIKDSPDYERIVNLRHFQRI-----QSLLEGQKIPFVGRRTK 968
D + S D+ + H +++ + EG + + GR+ +
Sbjct: 759 DPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATLVYGGRQVQ 801
Score = 29.6 bits (65), Expect(2) = 4e-22
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNAN 1080
PT+ TDV+ + +EE FGP++ I +N +
Sbjct: 809 PTVFTDVEDHMYLAKEESFGPIMVISKFQNGD 840
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,394,656
Number of extensions: 1124887
Number of successful extensions: 4320
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4292
Number of HSP's successfully gapped: 45
Length of query: 376
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,240,222
Effective search space: 3873340384
Effective search space used: 3873340384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007404
(1128 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536656.2| PREDICTED: similar to Fatty aldehyde dehydrogen... 443 e-141
Alignment gi|NP_001075889.1| aldehyde dehydrogenase, dimeric NADP-preferr... 358 e-109
Alignment gi|XP_533211.2| PREDICTED: similar to Aldehyde dehydrogenase 3B... 263 6e-79
Alignment gi|XP_864177.1| PREDICTED: similar to Aldehyde dehydrogenase 3B... 257 3e-77
Alignment gi|XP_864201.1| PREDICTED: similar to aldehyde dehydrogenase 3B... 239 6e-72
Alignment gi|XP_854611.1| PREDICTED: similar to Aldehyde dehydrogenase 3B... 232 4e-61
Alignment gi|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinas... 94 3e-24
Alignment gi|XP_531763.2| PREDICTED: similar to aldehyde dehydrogenase 1 ... 95 2e-22
Alignment gi|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (... 88 1e-21
Alignment gi|XP_533713.2| PREDICTED: similar to 10-formyltetrahydrofolate... 89 4e-20
>ref|XP_536656.2| PREDICTED: similar to Fatty aldehyde dehydrogenase (Aldehyde
dehydrogenase, microsomal) (Aldehyde dehydrogenase
family 3 member A2) [Canis familiaris].
Length = 485
Score = 443 bits (1140), Expect(3) = e-141
Identities = 218/304 (71%), Positives = 244/304 (80%)
Frame = +3
Query: 45 MEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQE 224
ME +QR+RAAF +GRS ERE+ NAYSQE
Sbjct: 1 MESRIQRVRAAFASGRSRPVRFRLQQLEALRRMVQEREKDILEAIAGDLCKSELNAYSQE 60
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 404
V+T+LGE+DL LE LPEW AA+PA+KNLLTMLDEAYVQPEPLGV+LIIGAWNYP VL+IQ
Sbjct: 61 VITVLGELDLVLENLPEWVAAKPAKKNLLTMLDEAYVQPEPLGVVLIIGAWNYPFVLTIQ 120
Query: 405 PLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 584
PL KPSE+SE TAKILA+LLP+YLDQDLY VINGGVEETT+LL+QRFDH
Sbjct: 121 PLIGAIAAGNAVIIKPSELSEKTAKILAELLPRYLDQDLYVVINGGVEETTELLKQRFDH 180
Query: 585 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
ILYTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCY+D DCDLD+ACRRI WGKYMNCGQT
Sbjct: 181 ILYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYVDKDCDLDIACRRITWGKYMNCGQT 240
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
CIAPDYVLCEPSLQ+Q+VQK+KE VKEFYG+NIK+SPDYERI+NLRHF+RI SLLEGQKI
Sbjct: 241 CIAPDYVLCEPSLQNQIVQKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLEGQKI 300
Query: 945 PFVG 956
F G
Sbjct: 301 AFGG 304
Score = 71.2 bits (173), Expect(3) = e-141
Identities = 31/49 (63%), Positives = 41/49 (83%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PTIL+DVDPE +VM+EEIFGP+LPI+P KNA++ + IN RE+P FY
Sbjct: 314 APTILSDVDPESRVMQEEIFGPILPIVPVKNADEAIKFINSREKPLAFY 362
Score = 30.0 bits (66), Expect(3) = e-141
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 932 GTEDTLRGETDEATRYIAPQYL 997
G + GETDEATRYIAP L
Sbjct: 297 GQKIAFGGETDEATRYIAPTIL 318
>ref|NP_001075889.1| aldehyde dehydrogenase, dimeric NADP-preferring [Canis lupus
familiaris].
Length = 453
Score = 358 bits (918), Expect(2) = e-109
Identities = 167/300 (55%), Positives = 216/300 (72%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
VQR RAAF +G++ E E+ NAY +EV+ +
Sbjct: 8 VQRARAAFNSGKTRPLQFRIQQLEALRRMIKEHEKDLAGALTADLHKNEWNAYYEEVVYV 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
L EI+ ++KLPEWAA P EK T DE Y+ EPLGV+LIIG WNYP ++IQP+
Sbjct: 68 LEEIEYMIKKLPEWAADEPVEKTPQTQQDECYIHSEPLGVVLIIGTWNYPFTVTIQPMVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+SEN A +LA ++PQYLD+DLY VI+GG+ ETT+LL++RFDHILYT
Sbjct: 128 AIAAGNAVVIKPSELSENMANLLATIIPQYLDRDLYPVISGGIPETTELLKERFDHILYT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
G+TAVGK++M AAAKHLTPVTLELGGK+PCY+D DCDLD+ACRRIAWGK+MN GQTC+AP
Sbjct: 188 GNTAVGKVIMMAAAKHLTPVTLELGGKNPCYVDKDCDLDIACRRIAWGKFMNSGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC+PS+Q+Q+V+K+K+A+KEFYG++ K S DY RI+N RHFQR+ L+EGQK+ + G
Sbjct: 248 DYILCDPSIQNQIVEKLKKALKEFYGEDAKKSRDYGRIINSRHFQRVMGLMEGQKVAYGG 307
Score = 56.2 bits (134), Expect(2) = e-109
Identities = 27/62 (43%), Positives = 41/62 (66%)
Frame = +1
Query: 943 YPSWGDGRSHSLHSPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPG 1122
Y GD + + +PTIL DVD + +VM+EEIFGP++PI+ ++ + + INQRE+P
Sbjct: 305 YGGTGDAATRYI-APTILIDVDTQSQVMQEEIFGPVMPIVCVRSLEEAIQFINQREKPLA 363
Query: 1123 FY 1128
Y
Sbjct: 364 LY 365
>ref|XP_533211.2| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
dehydrogenase 7) isoform 1 [Canis familiaris].
Length = 468
Score = 263 bits (671), Expect(3) = 6e-79
Identities = 129/301 (42%), Positives = 180/301 (59%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF GR+ E ++ + E+
Sbjct: 8 LQRLREAFSAGRTRSPEFRAAQLKGLGRFLQENKQLLQEALAQDLHKSTFESEVSEIHIS 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
EIDLAL L W KNL T LD A+++ EP G++LII WNYP+ L++ PL
Sbjct: 68 QSEIDLALRNLRSWMKDEKVPKNLATQLDSAFIRKEPFGLVLIIAPWNYPVNLTLVPLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE S +T K+LA++LP+YLDQ +AV+ GG +ET +LLE +FD+I +T
Sbjct: 128 ALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEHKFDYIFFT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD R+AW +Y NCGQTC+AP
Sbjct: 188 GSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFNCGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DYVLC P +++++ ++ A+ FYGD+ + SP R+V+ +HF+R++ LL ++ G
Sbjct: 248 DYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLRGLLGCGRVAIGG 307
Query: 957 R 959
+
Sbjct: 308 Q 308
Score = 50.1 bits (118), Expect(3) = 6e-79
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ + ++ ++ IN+RE+P Y
Sbjct: 317 APTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRREKPLALY 365
Score = 22.3 bits (46), Expect(3) = 6e-79
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE RYIAP L
Sbjct: 307 GQSDEDERYIAPTVL 321
>ref|XP_864177.1| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
dehydrogenase 7) isoform 2 [Canis familiaris].
Length = 472
Score = 257 bits (656), Expect(3) = 3e-77
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 4/305 (1%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF GR+ E ++ + E+
Sbjct: 8 LQRLREAFSAGRTRSPEFRAAQLKGLGRFLQENKQLLQEALAQDLHKSTFESEVSEIHIS 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
EIDLAL L W KNL T LD A+++ EP G++LII WNYP+ L++ PL
Sbjct: 68 QSEIDLALRNLRSWMKDEKVPKNLATQLDSAFIRKEPFGLVLIIAPWNYPVNLTLVPLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE S +T K+LA++LP+YLDQ +AV+ GG +ET +LLE +FD+I +T
Sbjct: 128 ALAAGNCVVLKPSEFSRSTEKVLAEVLPRYLDQSCFAVVLGGPQETGQLLEHKFDYIFFT 187
Query: 597 G----STAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
G S VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD R+AW +Y NCGQT
Sbjct: 188 GKHLGSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFNCGQT 247
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
C+APDYVLC P +++++ ++ A+ FYGD+ + SP R+V+ +HF+R++ LL ++
Sbjct: 248 CVAPDYVLCSPHTRERLLPALQSAITRFYGDDPRRSPSLGRVVSDKHFRRLRGLLGCGRV 307
Query: 945 PFVGR 959
G+
Sbjct: 308 AIGGQ 312
Score = 50.1 bits (118), Expect(3) = 3e-77
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ + ++ ++ IN+RE+P Y
Sbjct: 321 APTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRREKPLALY 369
Score = 22.3 bits (46), Expect(3) = 3e-77
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE RYIAP L
Sbjct: 311 GQSDEDERYIAPTVL 325
>ref|XP_864201.1| PREDICTED: similar to aldehyde dehydrogenase 3B1 isoform b isoform
3 [Canis familiaris].
Length = 431
Score = 239 bits (610), Expect(3) = 6e-72
Identities = 108/216 (50%), Positives = 153/216 (70%)
Frame = +3
Query: 312 TMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAK 491
T LD A+++ EP G++LII WNYP+ L++ PL KPSE S +T K+LA+
Sbjct: 56 TQLDSAFIRKEPFGLVLIIAPWNYPVNLTLVPLVGALAAGNCVVLKPSEFSRSTEKVLAE 115
Query: 492 LLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVMEAAAKHLTPVTLELG 671
+LP+YLDQ +AV+ GG +ET +LLE +FD+I +TGS VG+IVM AAAKHLTPVTLELG
Sbjct: 116 VLPRYLDQSCFAVVLGGPQETGQLLEHKFDYIFFTGSPRVGRIVMTAAAKHLTPVTLELG 175
Query: 672 GKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFY 851
GK+PCY+D DCD R+AW +Y NCGQTC+APDYVLC P +++++ ++ A+ FY
Sbjct: 176 GKNPCYVDDDCDPQTVANRVAWFRYFNCGQTCVAPDYVLCSPHTRERLLPALQSAITRFY 235
Query: 852 GDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVGR 959
GD+ + SP R+V+ +HF+R++ LL ++ G+
Sbjct: 236 GDDPRRSPSLGRVVSDKHFRRLRGLLGCGRVAIGGQ 271
Score = 50.1 bits (118), Expect(3) = 6e-72
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ + ++ ++ IN+RE+P Y
Sbjct: 280 APTVLVDVQETEPVMQEEIFGPILPIVNVGSLDEAIDFINRREKPLALY 328
Score = 22.3 bits (46), Expect(3) = 6e-72
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE RYIAP L
Sbjct: 270 GQSDEDERYIAPTVL 284
>ref|XP_854611.1| PREDICTED: similar to Aldehyde dehydrogenase 3B1 (Aldehyde
dehydrogenase 7) [Canis familiaris].
Length = 626
Score = 232 bits (592), Expect = 4e-61
Identities = 113/247 (45%), Positives = 147/247 (59%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
++RLR AF GR+ E ++ A + E+L
Sbjct: 8 LRRLREAFSAGRTRSPEFRAAQLKGLGRFLQENKQLLQEALAQDLHKSVFEAETSELLMC 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
E+DLAL+ L W P KNL T LD A++Q EP G++LII WNYP+ L + L
Sbjct: 68 QNEVDLALKNLHNWMKDEPVAKNLFTQLDSAFIQKEPFGLVLIIAPWNYPMNLPLVSLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+S++T K+LA++LPQYLDQ +AV+ GG +ET +LLE +FD+I +
Sbjct: 128 ALATGNCVVLKPSELSKSTEKVLAEVLPQYLDQSCFAVVLGGPQETRQLLEHKFDYIFFP 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VG+IVM AAAKHLTPVTLELGGK+PCY+D DCD R+AW +Y NCGQTC+ P
Sbjct: 188 GSPRVGRIVMTAAAKHLTPVTLELGGKNPCYVDDDCDPQTVANRVAWFRYFNCGQTCVVP 247
Query: 777 DYVLCEP 797
DY LC P
Sbjct: 248 DYALCSP 254
>ref|XP_545823.2| PREDICTED: similar to leucine-rich repeat kinase 1 [Canis
familiaris].
Length = 2787
Score = 93.6 bits (231), Expect(2) = 3e-24
Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 5/209 (2%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYL 509
+ + EP+GV I WN+PL++ + L KP+E + TA L L+ +
Sbjct: 405 FTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTIVVKPAEQTPLTALYLGSLIKEVG 464
Query: 510 DQDLYAVINGGVEETTKLLEQRFDHI---LYTGSTAVGKIVMEAAAK-HLTPVTLELGGK 677
I G T HI +TGST VGK+V EAA++ +L VTLELGGK
Sbjct: 465 FPPGVVNIVPGFGPTVGAAISSHPHISKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGK 524
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEFYG 854
+PC + D DLD+A G + N GQ C A V E + + V++ E A K G
Sbjct: 525 NPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQIYPEFVRRSVEYAKKRPIG 584
Query: 855 DNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
D + ++ + F +I L+E K
Sbjct: 585 DPFDIRTEQGPQIDQKQFDKILDLIESGK 613
Score = 37.4 bits (85), Expect(2) = 3e-24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRE 1110
PT+ ++V ++ +EEIFGP+ PI+ KN + + N E
Sbjct: 635 PTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLE 676
>ref|XP_531763.2| PREDICTED: similar to aldehyde dehydrogenase 1 family, member L2
[Canis familiaris].
Length = 923
Score = 95.1 bits (235), Expect(2) = 2e-22
Identities = 69/221 (31%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
+ + EPLGV II WNYPL++ KP++++ TA A+L +
Sbjct: 579 FTKKEPLGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPLTALKFAELSSKAG 638
Query: 507 LDQDLYAVI--NGGVEETTKLLEQRFDHILYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
+ + +I +GGV + +TGSTA+GK +M++ A +L V+LELGGK
Sbjct: 639 FPKGVINIIPGSGGVAGQRLSEHPHIRKLGFTGSTAIGKQIMKSCAVSNLKKVSLELGGK 698
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YG 854
SP I DC+LD A R + N G+ CIA + E S+ D+ V K+ E +K+ G
Sbjct: 699 SPLIIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHDEFVTKVVEEIKKMKIG 758
Query: 855 DNIKDSPDYERIVNLRHFQRI-----QSLLEGQKIPFVGRR 962
D + S D+ + H +++ + EG + + GR+
Sbjct: 759 DPLDRSTDHGPQNHQAHLEKLLQYCEAGVKEGATLVYGGRQ 799
Score = 30.0 bits (66), Expect(2) = 2e-22
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQR 1107
PT+ TDV+ + +EE FGP++ I K N ++ + QR
Sbjct: 809 PTVFTDVEDHMYLAKEESFGPIMVI--SKFQNGDIDGVLQR 847
>ref|XP_533525.1| PREDICTED: similar to Retinal dehydrogenase 1 (RalDH1) (RALDH 1)
(Aldehyde dehydrogenase family 1 member A1) (Aldehyde
dehydrogenase, cytosolic) (ALHDII) (ALDH-E1) isoform 1
[Canis familiaris].
Length = 501
Score = 88.2 bits (217), Expect(2) = 1e-21
Identities = 63/209 (30%), Positives = 101/209 (48%), Gaps = 5/209 (2%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
Y + EP+GV I WN+PL + I + KP+E + TA +A L+ +
Sbjct: 154 YTRHEPIGVCGQIIPWNFPLFMFIWKIGPALCCGNTVVVKPAEQTPLTALHVASLIQEAG 213
Query: 507 LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAAK-HLTPVTLELGGK 677
+ ++ G + D + +TGST VGK++ EAA K +L VTLELGGK
Sbjct: 214 FPPGVVNIVPGYGPTAGAAISSHMDIDKVAFTGSTEVGKMIKEAAGKSNLKRVTLELGGK 273
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YG 854
SP + D DLD A + + GQ CIA + E S+ D+ V++ E K++ G
Sbjct: 274 SPFIVFADSDLDSAVEVAHQALFYHQGQCCIAASRLFVEESIYDEFVRRSVERAKKYVLG 333
Query: 855 DNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
+ + ++ + +++I L+E K
Sbjct: 334 NPLTPGVSQGPQIDKKQYEKILDLIESGK 362
Score = 33.9 bits (76), Expect(2) = 1e-21
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT+ ++V E ++ +EEIFGP+ IM K+ + + N
Sbjct: 384 PTVFSNVTDEMRIAKEEIFGPVQQIMKFKSLDDVIKRAN 422
>ref|XP_533713.2| PREDICTED: similar to 10-formyltetrahydrofolate dehydrogenase
(10-FTHFDH) (Aldehyde dehydrogenase 1 family member L1)
[Canis familiaris].
Length = 902
Score = 88.6 bits (218), Expect(2) = 4e-20
Identities = 72/220 (32%), Positives = 104/220 (47%), Gaps = 4/220 (1%)
Frame = +3
Query: 285 ARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEIS 464
ARP LT + EP+GV I+ WNYPL++ KP++++
Sbjct: 550 ARPNRNLTLT-------KKEPIGVCGIVIPWNYPLMMLSWKTAACLAAGNTVVIKPAQVT 602
Query: 465 ENTAKILAKL-LPQYLDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAA 635
TA A+L L + + + ++ G + L D I +TGST VGK +M++
Sbjct: 603 PLTALKFAELTLKAGIPKGVVNILPGSGSLVGQRLSDHPDVRKIGFTGSTEVGKHIMKSC 662
Query: 636 A-KHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQ 812
A ++ V+LELGGKSP I DCDL A + + N G+ CIA + E S+ DQ
Sbjct: 663 ALSNVKKVSLELGGKSPLIIFADCDLSKAVQMGMSSVFFNKGENCIAAGRLFVEDSIHDQ 722
Query: 813 VVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLE 932
VQK+ E VK+ N D N H +Q L+E
Sbjct: 723 FVQKVVEEVKKMKIGNPLDRDTNHGPQN--HQAHLQKLVE 760
Score = 28.5 bits (62), Expect(2) = 4e-20
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPI 1059
PT+ TDV+ + +EE FGP++ I
Sbjct: 788 PTVFTDVEDHMFIAKEESFGPIMII 812
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,420,113
Number of extensions: 1168839
Number of successful extensions: 4312
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 4276
Number of HSP's successfully gapped: 51
Length of query: 376
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 272
Effective length of database: 15,407,560
Effective search space: 4190856320
Effective search space used: 4190856320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007404
(1128 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001026976.1| fatty aldehyde dehydrogenase isoform 1 [Homo... 429 e-137
Alignment gi|NP_000373.1| fatty aldehyde dehydrogenase isoform 2 [Homo sa... 429 e-137
Alignment gi|NP_001128640.1| aldehyde dehydrogenase, dimeric NADP-preferr... 357 e-110
Alignment gi|NP_001128639.1| aldehyde dehydrogenase, dimeric NADP-preferr... 357 e-110
Alignment gi|NP_000682.3| aldehyde dehydrogenase, dimeric NADP-preferring... 357 e-110
Alignment gi|NP_001154945.1| aldehyde dehydrogenase family 3 member B1 is... 265 3e-80
Alignment gi|NP_000685.1| aldehyde dehydrogenase family 3 member B1 isofo... 265 3e-80
Alignment gi|NP_001025181.1| aldehyde dehydrogenase family 3 member B1 is... 244 9e-74
Alignment gi|NP_001026786.1| aldehyde dehydrogenase family 3 member B2 [H... 234 5e-70
Alignment gi|NP_000686.2| aldehyde dehydrogenase family 3 member B2 [Homo... 234 5e-70
>ref|NP_001026976.1| fatty aldehyde dehydrogenase isoform 1 [Homo sapiens].
Length = 508
Score = 429 bits (1103), Expect(3) = e-137
Identities = 211/304 (69%), Positives = 237/304 (77%)
Frame = +3
Query: 45 MEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQE 224
ME EV+R+R AF +GRS ERE+ N YSQE
Sbjct: 1 MELEVRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILTAIAADLCKSEFNVYSQE 60
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 404
V+T+LGEID LE LPEW A+P +KN+LTMLDEAY+QP+PLGV+LIIGAWNYP VL+IQ
Sbjct: 61 VITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYIQPQPLGVVLIIGAWNYPFVLTIQ 120
Query: 405 PLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 584
PL KPSE+SENTAKILAKLLPQYLDQDLY VINGGVEETT+LL+QRFDH
Sbjct: 121 PLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQRFDH 180
Query: 585 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
I YTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLD+ CRRI WGKYMNCGQT
Sbjct: 181 IFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMNCGQT 240
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
CIAPDY+LCE SLQ+Q+V K+KE VKEFYG+NIK+SPDYERI+NLRHF+RI SLLEGQKI
Sbjct: 241 CIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLEGQKI 300
Query: 945 PFVG 956
F G
Sbjct: 301 AFGG 304
Score = 71.2 bits (173), Expect(3) = e-137
Identities = 30/49 (61%), Positives = 41/49 (83%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+LTDVDP+ KVM+EEIFGP+LPI+P KN ++ +N IN+RE+P Y
Sbjct: 314 APTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINEREKPLALY 362
Score = 30.0 bits (66), Expect(3) = e-137
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 932 GTEDTLRGETDEATRYIAPQYL 997
G + GETDEATRYIAP L
Sbjct: 297 GQKIAFGGETDEATRYIAPTVL 318
>ref|NP_000373.1| fatty aldehyde dehydrogenase isoform 2 [Homo sapiens].
Length = 485
Score = 429 bits (1103), Expect(3) = e-137
Identities = 211/304 (69%), Positives = 237/304 (77%)
Frame = +3
Query: 45 MEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQE 224
ME EV+R+R AF +GRS ERE+ N YSQE
Sbjct: 1 MELEVRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILTAIAADLCKSEFNVYSQE 60
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 404
V+T+LGEID LE LPEW A+P +KN+LTMLDEAY+QP+PLGV+LIIGAWNYP VL+IQ
Sbjct: 61 VITVLGEIDFMLENLPEWVTAKPVKKNVLTMLDEAYIQPQPLGVVLIIGAWNYPFVLTIQ 120
Query: 405 PLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 584
PL KPSE+SENTAKILAKLLPQYLDQDLY VINGGVEETT+LL+QRFDH
Sbjct: 121 PLIGAIAAGNAVIIKPSELSENTAKILAKLLPQYLDQDLYIVINGGVEETTELLKQRFDH 180
Query: 585 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
I YTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLD+ CRRI WGKYMNCGQT
Sbjct: 181 IFYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDKDCDLDIVCRRITWGKYMNCGQT 240
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
CIAPDY+LCE SLQ+Q+V K+KE VKEFYG+NIK+SPDYERI+NLRHF+RI SLLEGQKI
Sbjct: 241 CIAPDYILCEASLQNQIVWKIKETVKEFYGENIKESPDYERIINLRHFKRILSLLEGQKI 300
Query: 945 PFVG 956
F G
Sbjct: 301 AFGG 304
Score = 71.2 bits (173), Expect(3) = e-137
Identities = 30/49 (61%), Positives = 41/49 (83%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+LTDVDP+ KVM+EEIFGP+LPI+P KN ++ +N IN+RE+P Y
Sbjct: 314 APTVLTDVDPKTKVMQEEIFGPILPIVPVKNVDEAINFINEREKPLALY 362
Score = 30.0 bits (66), Expect(3) = e-137
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = +2
Query: 932 GTEDTLRGETDEATRYIAPQYL 997
G + GETDEATRYIAP L
Sbjct: 297 GQKIAFGGETDEATRYIAPTVL 318
>ref|NP_001128640.1| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
Length = 453
Score = 357 bits (917), Expect(2) = e-110
Identities = 169/300 (56%), Positives = 216/300 (72%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
V+R RAAF +GR+ E+E+ NAY +EV+ +
Sbjct: 8 VKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYV 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
L EI+ ++KLPEWAA P EK T DE Y+ EPLGV+L+IG WNYP L+IQP+
Sbjct: 68 LEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++RFDHILYT
Sbjct: 128 AIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKERFDHILYT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN GQTC+AP
Sbjct: 188 GSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHFQR+ L+EGQK+ + G
Sbjct: 248 DYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVAYGG 307
Score = 61.6 bits (148), Expect(2) = e-110
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +1
Query: 943 YPSWGDGRSHSLHSPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPG 1122
Y GD + + +PTILTDVDP+ VM+EEIFGP+LPI+ ++ + + INQRE+P
Sbjct: 305 YGGTGDAATRYI-APTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLA 363
Query: 1123 FY 1128
Y
Sbjct: 364 LY 365
>ref|NP_001128639.1| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
Length = 453
Score = 357 bits (917), Expect(2) = e-110
Identities = 169/300 (56%), Positives = 216/300 (72%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
V+R RAAF +GR+ E+E+ NAY +EV+ +
Sbjct: 8 VKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYV 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
L EI+ ++KLPEWAA P EK T DE Y+ EPLGV+L+IG WNYP L+IQP+
Sbjct: 68 LEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++RFDHILYT
Sbjct: 128 AIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKERFDHILYT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN GQTC+AP
Sbjct: 188 GSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHFQR+ L+EGQK+ + G
Sbjct: 248 DYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVAYGG 307
Score = 61.6 bits (148), Expect(2) = e-110
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +1
Query: 943 YPSWGDGRSHSLHSPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPG 1122
Y GD + + +PTILTDVDP+ VM+EEIFGP+LPI+ ++ + + INQRE+P
Sbjct: 305 YGGTGDAATRYI-APTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLA 363
Query: 1123 FY 1128
Y
Sbjct: 364 LY 365
>ref|NP_000682.3| aldehyde dehydrogenase, dimeric NADP-preferring [Homo sapiens].
Length = 453
Score = 357 bits (917), Expect(2) = e-110
Identities = 169/300 (56%), Positives = 216/300 (72%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
V+R RAAF +GR+ E+E+ NAY +EV+ +
Sbjct: 8 VKRARAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYV 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
L EI+ ++KLPEWAA P EK T DE Y+ EPLGV+L+IG WNYP L+IQP+
Sbjct: 68 LEEIEYMIQKLPEWAADEPVEKTPQTQQDELYIHSEPLGVVLVIGTWNYPFNLTIQPMVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+SEN A +LA ++PQYLD+DLY VINGGV ETT+LL++RFDHILYT
Sbjct: 128 AIAAGNSVVLKPSELSENMASLLATIIPQYLDKDLYPVINGGVPETTELLKERFDHILYT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GST VGKI+M AAAKHLTPVTLELGGKSPCY+D +CDLDVACRRIAWGK+MN GQTC+AP
Sbjct: 188 GSTGVGKIIMTAAAKHLTPVTLELGGKSPCYVDKNCDLDVACRRIAWGKFMNSGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC+PS+Q+Q+V+K+K+++KEFYG++ K S DY RI++ RHFQR+ L+EGQK+ + G
Sbjct: 248 DYILCDPSIQNQIVEKLKKSLKEFYGEDAKKSRDYGRIISARHFQRVMGLIEGQKVAYGG 307
Score = 61.6 bits (148), Expect(2) = e-110
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +1
Query: 943 YPSWGDGRSHSLHSPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPG 1122
Y GD + + +PTILTDVDP+ VM+EEIFGP+LPI+ ++ + + INQRE+P
Sbjct: 305 YGGTGDAATRYI-APTILTDVDPQSPVMQEEIFGPVLPIVCVRSLEEAIQFINQREKPLA 363
Query: 1123 FY 1128
Y
Sbjct: 364 LY 365
>ref|NP_001154945.1| aldehyde dehydrogenase family 3 member B1 isoform a [Homo sapiens].
Length = 468
Score = 265 bits (678), Expect(3) = 3e-80
Identities = 132/301 (43%), Positives = 181/301 (60%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
++RLR AF GR+ E ++ + EV
Sbjct: 8 LRRLREAFHAGRTRPAEFRAAQLQGLGRFLQENKQLLHDALAQDLHKSAFESEVSEVAIS 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
GE+ LAL L W KNL T LD A+++ EP G++LII WNYPL L++ PL
Sbjct: 68 QGEVTLALRNLRAWMKDERVPKNLATQLDSAFIRKEPFGLVLIIAPWNYPLNLTLVPLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS+N KILA++LPQY+DQ +AV+ GG +ET +LLE RFD+I +T
Sbjct: 128 ALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEHRFDYIFFT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+AW +Y N GQTC+AP
Sbjct: 188 GSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFNAGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DYVLC P +Q++++ ++ + FYGD+ + SP+ RI+N + FQR+++LL ++ G
Sbjct: 248 DYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGG 307
Query: 957 R 959
+
Sbjct: 308 Q 308
Score = 50.4 bits (119), Expect(3) = 3e-80
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ ++ + IN+RE+P Y
Sbjct: 317 APTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRREKPLALY 365
Score = 23.5 bits (49), Expect(3) = 3e-80
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE+ RYIAP L
Sbjct: 307 GQSDESDRYIAPTVL 321
>ref|NP_000685.1| aldehyde dehydrogenase family 3 member B1 isoform a [Homo sapiens].
Length = 468
Score = 265 bits (678), Expect(3) = 3e-80
Identities = 132/301 (43%), Positives = 181/301 (60%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
++RLR AF GR+ E ++ + EV
Sbjct: 8 LRRLREAFHAGRTRPAEFRAAQLQGLGRFLQENKQLLHDALAQDLHKSAFESEVSEVAIS 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
GE+ LAL L W KNL T LD A+++ EP G++LII WNYPL L++ PL
Sbjct: 68 QGEVTLALRNLRAWMKDERVPKNLATQLDSAFIRKEPFGLVLIIAPWNYPLNLTLVPLVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS+N KILA++LPQY+DQ +AV+ GG +ET +LLE RFD+I +T
Sbjct: 128 ALAAGNCVVLKPSEISKNVEKILAEVLPQYVDQSCFAVVLGGPQETGQLLEHRFDYIFFT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VGKIVM AAAKHLTPVTLELGGK+PCY+D +CD R+AW +Y N GQTC+AP
Sbjct: 188 GSPRVGKIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVAWFRYFNAGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DYVLC P +Q++++ ++ + FYGD+ + SP+ RI+N + FQR+++LL ++ G
Sbjct: 248 DYVLCSPEMQERLLPALQSTITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGG 307
Query: 957 R 959
+
Sbjct: 308 Q 308
Score = 50.4 bits (119), Expect(3) = 3e-80
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ ++ + IN+RE+P Y
Sbjct: 317 APTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRREKPLALY 365
Score = 23.5 bits (49), Expect(3) = 3e-80
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE+ RYIAP L
Sbjct: 307 GQSDESDRYIAPTVL 321
>ref|NP_001025181.1| aldehyde dehydrogenase family 3 member B1 isoform b [Homo sapiens].
Length = 431
Score = 244 bits (622), Expect(3) = 9e-74
Identities = 112/216 (51%), Positives = 154/216 (71%)
Frame = +3
Query: 312 TMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAK 491
T LD A+++ EP G++LII WNYPL L++ PL KPSEIS+N KILA+
Sbjct: 56 TQLDSAFIRKEPFGLVLIIAPWNYPLNLTLVPLVGALAAGNCVVLKPSEISKNVEKILAE 115
Query: 492 LLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVMEAAAKHLTPVTLELG 671
+LPQY+DQ +AV+ GG +ET +LLE RFD+I +TGS VGKIVM AAAKHLTPVTLELG
Sbjct: 116 VLPQYVDQSCFAVVLGGPQETGQLLEHRFDYIFFTGSPRVGKIVMTAAAKHLTPVTLELG 175
Query: 672 GKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFY 851
GK+PCY+D +CD R+AW +Y N GQTC+APDYVLC P +Q++++ ++ + FY
Sbjct: 176 GKNPCYVDDNCDPQTVANRVAWFRYFNAGQTCVAPDYVLCSPEMQERLLPALQSTITRFY 235
Query: 852 GDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVGR 959
GD+ + SP+ RI+N + FQR+++LL ++ G+
Sbjct: 236 GDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQ 271
Score = 50.4 bits (119), Expect(3) = 9e-74
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ ++ + IN+RE+P Y
Sbjct: 280 APTVLVDVQEMEPVMQEEIFGPILPIVNVQSLDEAIEFINRREKPLALY 328
Score = 23.5 bits (49), Expect(3) = 9e-74
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE+ RYIAP L
Sbjct: 270 GQSDESDRYIAPTVL 284
>ref|NP_001026786.1| aldehyde dehydrogenase family 3 member B2 [Homo sapiens].
Length = 385
Score = 234 bits (597), Expect(2) = 5e-70
Identities = 109/223 (48%), Positives = 150/223 (67%)
Frame = +3
Query: 291 PAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISEN 470
P NL LD ++ EP G++LII WNYPL L++ L KPSEIS+
Sbjct: 5 PRSTNLFMKLDSVFIWKEPFGLVLIIAPWNYPLNLTLVLLVGALAAGSCVVLKPSEISQG 64
Query: 471 TAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVMEAAAKHLT 650
T K+LA++LPQYLDQ +AV+ GG +ET +LLE + D+I +TGS VGKIVM AA KHLT
Sbjct: 65 TEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVMTAATKHLT 124
Query: 651 PVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMK 830
PVTLELGGK+PCY+D +CD R+AW Y N GQTC+APDYVLC P +Q++++ ++
Sbjct: 125 PVTLELGGKNPCYVDDNCDPQTVANRVAWFCYFNAGQTCVAPDYVLCSPEMQERLLPALQ 184
Query: 831 EAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVGR 959
+ FYGD+ + SP+ RI+N + FQR+++LL ++ G+
Sbjct: 185 STITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQ 227
Score = 49.7 bits (117), Expect(2) = 5e-70
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ ++ + IN++E+P Y
Sbjct: 236 APTVLVDVQETEPVMQEEIFGPILPIVNVQSVDEAIKFINRQEKPLALY 284
>ref|NP_000686.2| aldehyde dehydrogenase family 3 member B2 [Homo sapiens].
Length = 385
Score = 234 bits (597), Expect(2) = 5e-70
Identities = 109/223 (48%), Positives = 150/223 (67%)
Frame = +3
Query: 291 PAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISEN 470
P NL LD ++ EP G++LII WNYPL L++ L KPSEIS+
Sbjct: 5 PRSTNLFMKLDSVFIWKEPFGLVLIIAPWNYPLNLTLVLLVGALAAGSCVVLKPSEISQG 64
Query: 471 TAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYTGSTAVGKIVMEAAAKHLT 650
T K+LA++LPQYLDQ +AV+ GG +ET +LLE + D+I +TGS VGKIVM AA KHLT
Sbjct: 65 TEKVLAEVLPQYLDQSCFAVVLGGPQETGQLLEHKLDYIFFTGSPRVGKIVMTAATKHLT 124
Query: 651 PVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMK 830
PVTLELGGK+PCY+D +CD R+AW Y N GQTC+APDYVLC P +Q++++ ++
Sbjct: 125 PVTLELGGKNPCYVDDNCDPQTVANRVAWFCYFNAGQTCVAPDYVLCSPEMQERLLPALQ 184
Query: 831 EAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVGR 959
+ FYGD+ + SP+ RI+N + FQR+++LL ++ G+
Sbjct: 185 STITRFYGDDPQSSPNLGRIINQKQFQRLRALLGCGRVAIGGQ 227
Score = 49.7 bits (117), Expect(2) = 5e-70
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ ++ ++ + IN++E+P Y
Sbjct: 236 APTVLVDVQETEPVMQEEIFGPILPIVNVQSVDEAIKFINRQEKPLALY 284
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,412,430
Number of extensions: 1142198
Number of successful extensions: 4274
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 4238
Number of HSP's successfully gapped: 57
Length of query: 376
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 272
Effective length of database: 14,868,908
Effective search space: 4044342976
Effective search space used: 4044342976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007404
(1128 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031463.2| fatty aldehyde dehydrogenase [Mus musculus]. 431 e-134
Alignment gi|NP_001106196.1| aldehyde dehydrogenase, dimeric NADP-preferr... 325 e-100
Alignment gi|NP_031462.2| aldehyde dehydrogenase, dimeric NADP-preferring... 325 e-100
Alignment gi|NP_082821.2| aldehyde dehydrogenase 3 family, member B2-like... 276 2e-83
Alignment gi|NP_001170909.1| aldehyde dehydrogenase 3 family, member B2 [... 275 4e-83
Alignment gi|NP_080592.2| aldehyde dehydrogenase family 3 member B1 [Mus ... 265 8e-80
Alignment gi|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus ... 93 2e-24
Alignment gi|NP_038495.2| retinal dehydrogenase 1 [Mus musculus]. 97 2e-24
Alignment gi|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus muscul... 93 5e-23
Alignment gi|NP_064377.2| 4-trimethylaminobutyraldehyde dehydrogenase [Mu... 95 6e-22
>ref|NP_031463.2| fatty aldehyde dehydrogenase [Mus musculus].
Length = 484
Score = 431 bits (1109), Expect(2) = e-134
Identities = 214/304 (70%), Positives = 243/304 (79%)
Frame = +3
Query: 45 MEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQE 224
MER+V RLR AF++GRS ERE+ NAYS E
Sbjct: 1 MERQVLRLRQAFRSGRSRPLRFRLQQLEALRRMVQEREKEILAAIAADLSKSELNAYSHE 60
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 404
V+TILGEID L LPE A+ARPA+KNLLTM+DEAYVQPEPLGV+LIIGAWNYP VL++Q
Sbjct: 61 VITILGEIDFMLGNLPELASARPAKKNLLTMMDEAYVQPEPLGVVLIIGAWNYPFVLTMQ 120
Query: 405 PLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 584
PL KPSE+SENTAKILA+LLPQYLDQDLYA++NGG+ ETT+LL+QRFDH
Sbjct: 121 PLVGAIAAGNAAIVKPSELSENTAKILAELLPQYLDQDLYAIVNGGIPETTELLKQRFDH 180
Query: 585 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
ILYTG+TAVGKIVMEAAAKHLTPVTLELGGKSPCYID DCDLDVACRRIAWGKYMNCGQT
Sbjct: 181 ILYTGNTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDRDCDLDVACRRIAWGKYMNCGQT 240
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
CIAPDY+LCE SLQ+Q+VQK+KE VK+FYG+NIK SPDYERI+NLRHF+R+QSLL+GQKI
Sbjct: 241 CIAPDYILCEASLQNQIVQKIKETVKDFYGENIKASPDYERIINLRHFKRLQSLLKGQKI 300
Query: 945 PFVG 956
F G
Sbjct: 301 AFGG 304
Score = 67.4 bits (163), Expect(2) = e-134
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PTILTDVDP KVM+EEIFGP+LPI+ KN ++ +N IN RE+P Y
Sbjct: 314 APTILTDVDPNSKVMQEEIFGPILPIVSVKNVDEAINFINDREKPLALY 362
>ref|NP_001106196.1| aldehyde dehydrogenase, dimeric NADP-preferring [Mus musculus].
Length = 453
Score = 325 bits (833), Expect(2) = e-100
Identities = 154/305 (50%), Positives = 208/305 (68%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
V R R AF +G++ E + +Y +EV +
Sbjct: 8 VNRARDAFNSGKTRPLQFRVEQLEALQRMINENLKGISKALASNLRKNEWTSYYEEVAHV 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
L EID ++ L +WA P K T D+ Y+ EPLGV+L+IGAWNYP L+IQP+
Sbjct: 68 LDEIDFTIKGLSDWAEDEPVAKTRQTQEDDLYIHSEPLGVVLVIGAWNYPFNLTIQPMVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+S++ A +L+ L+PQY+D+DLY VI GGV ETT+LL+++FDHI+YT
Sbjct: 128 AIAAGNAVVLKPSEVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKEKFDHIMYT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GSTAVGKIVM AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN GQTC+AP
Sbjct: 188 GSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC+PS+Q+++V+K+K+++K+FYG++ K S DY RI+N RHFQR+ +L++ +K+ G
Sbjct: 248 DYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSHDYGRIINDRHFQRVINLIDSKKVAHGG 307
Query: 957 RRTKP 971
+P
Sbjct: 308 TWDQP 312
Score = 58.2 bits (139), Expect(2) = e-100
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PTIL DVDP+ VM+EEIFGP++PI+ ++ ++ + INQRE+P Y
Sbjct: 317 APTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDEAIKFINQREKPLALY 365
>ref|NP_031462.2| aldehyde dehydrogenase, dimeric NADP-preferring [Mus musculus].
Length = 453
Score = 325 bits (833), Expect(2) = e-100
Identities = 154/305 (50%), Positives = 208/305 (68%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
V R R AF +G++ E + +Y +EV +
Sbjct: 8 VNRARDAFNSGKTRPLQFRVEQLEALQRMINENLKGISKALASNLRKNEWTSYYEEVAHV 67
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
L EID ++ L +WA P K T D+ Y+ EPLGV+L+IGAWNYP L+IQP+
Sbjct: 68 LDEIDFTIKGLSDWAEDEPVAKTRQTQEDDLYIHSEPLGVVLVIGAWNYPFNLTIQPMVG 127
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSE+S++ A +L+ L+PQY+D+DLY VI GGV ETT+LL+++FDHI+YT
Sbjct: 128 AIAAGNAVVLKPSEVSDHMADLLSTLIPQYMDKDLYPVIKGGVPETTELLKEKFDHIMYT 187
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GSTAVGKIVM AAAKHLTPVTLELGGKSPCY+D DCDLDVACRRIAWGK+MN GQTC+AP
Sbjct: 188 GSTAVGKIVMAAAAKHLTPVTLELGGKSPCYVDKDCDLDVACRRIAWGKFMNSGQTCVAP 247
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC+PS+Q+++V+K+K+++K+FYG++ K S DY RI+N RHFQR+ +L++ +K+ G
Sbjct: 248 DYILCDPSIQNEIVEKLKKSLKDFYGEDAKQSHDYGRIINDRHFQRVINLIDSKKVAHGG 307
Query: 957 RRTKP 971
+P
Sbjct: 308 TWDQP 312
Score = 58.2 bits (139), Expect(2) = e-100
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PTIL DVDP+ VM+EEIFGP++PI+ ++ ++ + INQRE+P Y
Sbjct: 317 APTILVDVDPQSPVMQEEIFGPVMPIVCVRSLDEAIKFINQREKPLALY 365
>ref|NP_082821.2| aldehyde dehydrogenase 3 family, member B2-like [Mus musculus].
Length = 479
Score = 276 bits (705), Expect(3) = 2e-83
Identities = 137/313 (43%), Positives = 187/313 (59%)
Frame = +3
Query: 21 RARDRGPAMEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXX 200
RA E ++QRL+ AF TG++ + +
Sbjct: 9 RADQGTDPFEEKLQRLKEAFNTGKTKTAKFRAEQLQSLGRFLQDNSKQLHDALDGDLGKS 68
Query: 201 XXNAYSQEVLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWN 380
+ E++ E+DLAL+ L W P NLLT L A+++ EP G++LII WN
Sbjct: 69 GFESDMSEIILCENEVDLALKNLQTWMKDEPVSTNLLTKLSTAFIRKEPFGLVLIIAPWN 128
Query: 381 YPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTK 560
YP+ L I PL KPSEIS+NT K+LA+LLPQYLDQ +AV+ GG EET +
Sbjct: 129 YPVNLMIIPLVGAIAAGNCVVLKPSEISKNTEKVLAELLPQYLDQSCFAVMLGGPEETGQ 188
Query: 561 LLEQRFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWG 740
LLE +FD+I +TGS VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD R+AW
Sbjct: 189 LLEHKFDYIFFTGSPRVGKIVMTAAAKHLTPITLELGGKNPCYVDDNCDPQTVANRVAWF 248
Query: 741 KYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQ 920
+Y N GQTC+APDY+LC +Q+Q+V ++ A+ FYGDN + SP+ RI+N +HF+R+Q
Sbjct: 249 RYFNAGQTCVAPDYILCSQEMQEQLVPALQNAITRFYGDNPQTSPNLGRIINQKHFKRLQ 308
Query: 921 SLLEGQKIPFVGR 959
LL ++ G+
Sbjct: 309 GLLGCGRVAIGGQ 321
Score = 51.2 bits (121), Expect(3) = 2e-83
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LP++ ++ ++ + +NQRE+P Y
Sbjct: 330 APTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNQREKPLALY 378
Score = 23.1 bits (48), Expect(3) = 2e-83
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE RYIAP L
Sbjct: 320 GQSDEGERYIAPTVL 334
>ref|NP_001170909.1| aldehyde dehydrogenase 3 family, member B2 [Mus musculus].
Length = 479
Score = 275 bits (703), Expect(3) = 4e-83
Identities = 138/315 (43%), Positives = 189/315 (60%)
Frame = +3
Query: 15 SERARDRGPAMEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXX 194
SE ++ GP+ E + LR AF GR+ E +E
Sbjct: 8 SEPSQGAGPS-EATLHSLREAFNAGRTRPTEFRTAQLRSLGRFLQENKELLQDALAKDVG 66
Query: 195 XXXXNAYSQEVLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGA 374
+ E++ E+DLAL+ L W P NLLT L A+++ EP G++LII
Sbjct: 67 KSGFESDMSEIILCENEVDLALKNLQTWMKDEPVSTNLLTKLSSAFIRKEPFGLVLIIAP 126
Query: 375 WNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEET 554
WNYP+ L I PL KPSEIS+NT K+LA+LLPQYLDQ +AV+ GG EET
Sbjct: 127 WNYPVNLMIIPLVGAIAAGNCVVLKPSEISKNTEKVLAELLPQYLDQSCFAVMLGGPEET 186
Query: 555 TKLLEQRFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIA 734
+LLE +FD+I +TGS VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD R+A
Sbjct: 187 RQLLEHKFDYIFFTGSPRVGKIVMTAAAKHLTPITLELGGKNPCYVDDNCDPQTVANRVA 246
Query: 735 WGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQR 914
W +Y N GQTC+APDY+LC +Q+++V ++ ++ FYGDN + SP+ RI+N +HF+R
Sbjct: 247 WFRYFNAGQTCVAPDYILCSQEMQERLVPALQNSITRFYGDNPQTSPNLGRIINQKHFKR 306
Query: 915 IQSLLEGQKIPFVGR 959
+Q LL ++ G+
Sbjct: 307 LQGLLGCGRVAIGGQ 321
Score = 50.8 bits (120), Expect(3) = 4e-83
Identities = 21/49 (42%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LP++ ++ ++ + IN+RE+P Y
Sbjct: 330 APTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFINRREKPLALY 378
Score = 23.1 bits (48), Expect(3) = 4e-83
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE RYIAP L
Sbjct: 320 GQSDEGERYIAPTVL 334
>ref|NP_080592.2| aldehyde dehydrogenase family 3 member B1 [Mus musculus].
Length = 468
Score = 265 bits (677), Expect(3) = 8e-80
Identities = 129/306 (42%), Positives = 185/306 (60%)
Frame = +3
Query: 42 AMEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQ 221
+ E ++Q+LR AF+ GR+ + ++ A
Sbjct: 3 SFEDKLQQLREAFKEGRTRSAEFRAAQLQGLSHFLRDNKQQLQEALAQDLHKSAFEAEVS 62
Query: 222 EVLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSI 401
E+ E+DLAL L W KNL T LD A+++ EP G++LII WNYP+ L++
Sbjct: 63 EIAISQAEVDLALRNLRSWMKDEKVSKNLATQLDSAFIRKEPFGLVLIIVPWNYPINLTL 122
Query: 402 QPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFD 581
PL KPSEIS+ T KILA++LP+YLDQ + V+ GG +ET +LLE +FD
Sbjct: 123 VPLVGAIAAGNCVVLKPSEISKATEKILAEVLPRYLDQSCFTVVLGGRQETGQLLEHKFD 182
Query: 582 HILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQ 761
+I +TG+ VGKIVM AAAKHLTP+TLELGGK+PCY+D +CD + R+AW +Y N GQ
Sbjct: 183 YIFFTGNAYVGKIVMAAAAKHLTPITLELGGKNPCYVDDNCDPQIVANRVAWFRYFNAGQ 242
Query: 762 TCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
TC+APDY+LC +Q+++V ++ A+ FYGDN + SP+ RI+N +HF+R+Q LL +
Sbjct: 243 TCVAPDYILCSQEMQERLVPALQNAITRFYGDNPQTSPNLGRIINQKHFKRLQGLLGCGR 302
Query: 942 IPFVGR 959
+ G+
Sbjct: 303 VAIGGQ 308
Score = 49.7 bits (117), Expect(3) = 8e-80
Identities = 20/49 (40%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LP++ ++ ++ + +N+RE+P Y
Sbjct: 317 APTVLVDVQETEPVMQEEIFGPILPLVTVRSLDEAIEFMNRREKPLALY 365
Score = 23.1 bits (48), Expect(3) = 8e-80
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 953 GETDEATRYIAPQYL 997
G++DE RYIAP L
Sbjct: 307 GQSDEGERYIAPTVL 321
>ref|NP_444310.3| aldehyde dehydrogenase family 1 member A3 [Mus musculus].
Length = 512
Score = 93.2 bits (230), Expect(2) = 2e-24
Identities = 68/209 (32%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYL 509
+ + EP+GV I WN+PL++ L KP+E + TA LA L+ +
Sbjct: 165 FTRHEPIGVCGAITPWNFPLLMLAWKLAPALCCGNTVVLKPAEQTPLTALYLASLIKEVG 224
Query: 510 DQDLYAVINGGVEETTKLL---EQRFDHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGK 677
I G T + + I +TGST VGK+V EAA++ +L VTLELGGK
Sbjct: 225 FPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGKLVREAASRSNLKRVTLELGGK 284
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEFYG 854
+PC + D DLD+A G + N GQ C A V E + + V++ E A K G
Sbjct: 285 NPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYGEFVRRSVEFAKKRPVG 344
Query: 855 DNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
D + ++ + F +I L+E K
Sbjct: 345 DPFDAKTEQGPQIDQKQFDKILELIESGK 373
Score = 38.5 bits (88), Expect(2) = 2e-24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRE 1110
PT+ +DV ++ +EEIFGP+ PI+ KN + + N +
Sbjct: 395 PTVFSDVTDNMRIAKEEIFGPVQPILKFKNLEEVIKRANSTD 436
>ref|NP_038495.2| retinal dehydrogenase 1 [Mus musculus].
Length = 501
Score = 97.1 bits (240), Expect(2) = 2e-24
Identities = 73/253 (28%), Positives = 120/253 (47%), Gaps = 10/253 (3%)
Frame = +3
Query: 213 YSQEVLTILGEIDLALEKLPEWA-----AARPAEKNLLTMLDEAYVQPEPLGVMLIIGAW 377
++ L+ LG AL+ WA P++ ++ T Y + EP+GV I W
Sbjct: 115 FANAYLSDLGGCIKALKYCAGWADKIHGQTIPSDGDIFT-----YTRREPIGVCGQIIPW 169
Query: 378 NYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY-LDQDLYAVINGGVEET 554
N+P+++ I + KP+E + TA LA L+ + + ++ G
Sbjct: 170 NFPMLMFIWKIGPALSCGNTVVVKPAEQTPLTALHLASLIKEAGFPPGVVNIVPGYGPTA 229
Query: 555 TKLLEQRFD--HILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACR 725
+ D + +TGST VGK++ EAA K +L VTLELGGKSPC + D DLD+A
Sbjct: 230 GAAISSHMDVDKVAFTGSTQVGKLIKEAAGKSNLKRVTLELGGKSPCIVFADADLDIAVE 289
Query: 726 RIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YGDNIKDSPDYERIVNLR 902
G + + GQ C+A + E S+ D+ V++ E K++ G+ + + ++
Sbjct: 290 FAHHGVFYHQGQCCVAASRIFVEESVYDEFVKRSVERAKKYVLGNPLTPGINQGPQIDKE 349
Query: 903 HFQRIQSLLEGQK 941
+I L+E K
Sbjct: 350 QHDKILDLIESGK 362
Score = 34.3 bits (77), Expect(2) = 2e-24
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT+ ++V E ++ +EEIFGP+ IM K+ + + N
Sbjct: 384 PTVFSNVTDEMRIAKEEIFGPVQQIMKFKSVDDVIKRAN 422
>ref|NP_036051.1| aldehyde dehydrogenase, cytosolic 1 [Mus musculus].
Length = 501
Score = 92.8 bits (229), Expect(2) = 5e-23
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 5/222 (2%)
Frame = +3
Query: 291 PAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISEN 470
P++ N+ T Y + EP+GV I WN PL++ L KP+E +
Sbjct: 146 PSDGNIFT-----YTRREPIGVCGQIIPWNGPLIIFTWKLGPALSCGNTVVVKPAEQTPL 200
Query: 471 TAKILAKLLPQY-LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAAK 641
TA +A L+ + + ++ G + D + +TGST VGK++ EAA K
Sbjct: 201 TALHMASLIKEAGFPPGVVNIVPGYGPTAGGAISSHMDIDKVSFTGSTEVGKLIKEAAGK 260
Query: 642 -HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVV 818
+L VTLELGGKSPC + D DLD A G + + GQ C+A + E S+ D+ V
Sbjct: 261 SNLKRVTLELGGKSPCIVFADADLDSAVEFAHQGVFFHQGQICVAASRLFVEESIYDEFV 320
Query: 819 QKMKEAVKEF-YGDNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
++ E K++ G+ + + ++ +I L+E K
Sbjct: 321 RRSVERAKKYILGNPLNSGINQGPQIDKEQHNKILGLIESGK 362
Score = 33.9 bits (76), Expect(2) = 5e-23
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT+ ++V E ++ +EEIFGP+ IM K+ + + N
Sbjct: 384 PTVFSNVTDEMRIAKEEIFGPVQQIMKFKSMDDVIKRAN 422
>ref|NP_064377.2| 4-trimethylaminobutyraldehyde dehydrogenase [Mus musculus].
Length = 518
Score = 95.1 bits (235), Expect(2) = 6e-22
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 3/199 (1%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
Y + EPLGV + IGAWNYP ++ KPS + +A +LA++ +
Sbjct: 165 YTRREPLGVCVGIGAWNYPFQIACWKSAPALACGNAMIFKPSPFTPVSALLLAEIYTKAG 224
Query: 507 LDQDLYAVINGGVEETTKLLEQR-FDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSP 683
L+ V+ GG L R I +TGS G +ME +AK + P+TLELGGKSP
Sbjct: 225 APPGLFNVVQGGAATGQFLCHHREVAKISFTGSVPTGVKIMEMSAKGVKPITLELGGKSP 284
Query: 684 CYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGDN 860
I DC+++ A + ++ GQ C V + + D+ + + +K+ K GD
Sbjct: 285 LIIFSDCNMENAVKGALMANFLTQGQVCCNGTRVFVQKEIADKFINEVVKQTQKIKLGDP 344
Query: 861 IKDSPDYERIVNLRHFQRI 917
+ + ++N H +R+
Sbjct: 345 LLEDTRMGPLINAPHLERV 363
Score = 27.7 bits (60), Expect(2) = 6e-22
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
+P ILT+ + ++EEIFGP++ I+ + L N
Sbjct: 398 TPCILTNCRDDMTCVKEEIFGPVMSILTFGTEAEVLERAN 437
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,805,167
Number of extensions: 947153
Number of successful extensions: 3695
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3668
Number of HSP's successfully gapped: 40
Length of query: 376
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 273
Effective length of database: 12,523,851
Effective search space: 3419011323
Effective search space used: 3419011323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007404
(1128 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132080.1| PREDICTED: fatty aldehyde dehydrogenase-like... 497 e-157
Alignment gi|XP_003132084.2| PREDICTED: aldehyde dehydrogenase, dimeric N... 346 e-107
Alignment gi|XP_003353786.1| PREDICTED: LOW QUALITY PROTEIN: aldehyde deh... 270 2e-81
Alignment gi|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 m... 92 7e-24
Alignment gi|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde deh... 96 5e-22
Alignment gi|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 m... 91 1e-21
Alignment gi|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 78 3e-18
Alignment gi|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitocho... 78 3e-18
Alignment gi|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 m... 66 6e-16
Alignment gi|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochond... 73 3e-13
>ref|XP_003132080.1| PREDICTED: fatty aldehyde dehydrogenase-like [Sus scrofa].
Length = 485
Score = 497 bits (1280), Expect(2) = e-157
Identities = 256/304 (84%), Positives = 257/304 (84%)
Frame = +3
Query: 45 MEREVQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQE 224
MEREVQRLRAAFQTGRS EREE NAYSQE
Sbjct: 1 MEREVQRLRAAFQTGRSRPLAFRLQQLQALRRMVQEREEDLLAAIAADLSKSKLNAYSQE 60
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 404
VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ
Sbjct: 61 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQ 120
Query: 405 PLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 584
PL KPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH
Sbjct: 121 PLIGAIAAGNAVIIKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDH 180
Query: 585 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 764
ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT
Sbjct: 181 ILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQT 240
Query: 765 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHF+RIQSLLEGQKI
Sbjct: 241 CIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFKRIQSLLEGQKI 300
Query: 945 PFVG 956
F G
Sbjct: 301 AFGG 304
Score = 75.9 bits (185), Expect(2) = e-157
Identities = 34/49 (69%), Positives = 42/49 (85%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PTILTDVDPE KVMREEIFGP+LPI+P KNA++ + IN+RE+P FY
Sbjct: 314 APTILTDVDPEAKVMREEIFGPILPIVPVKNADEAVKFINEREKPLAFY 362
>ref|XP_003132084.2| PREDICTED: aldehyde dehydrogenase, dimeric NADP-preferring, partial
[Sus scrofa].
Length = 566
Score = 346 bits (887), Expect(2) = e-107
Identities = 157/250 (62%), Positives = 200/250 (80%)
Frame = +3
Query: 207 NAYSQEVLTILGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYP 386
NAY +E++ +L EI+ ++KLPEWAA P EK T DE Y+ EPLGV+LIIGAWNYP
Sbjct: 39 NAYYEEMVYVLEEIEHVIKKLPEWAADEPVEKTPQTQQDEPYIHSEPLGVVLIIGAWNYP 98
Query: 387 LVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLL 566
L+IQP+ KPSE+SENT ++LA L+PQYLD+DLY V+ GGV ETT+LL
Sbjct: 99 FNLTIQPMVGAIAAGNAVVIKPSELSENTERLLATLIPQYLDKDLYHVVTGGVPETTELL 158
Query: 567 EQRFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKY 746
++RFDHILYTGS +GK+VM AAAKHLTPVTLELGGK+PCY+D DCDLDVACRRIAWGK+
Sbjct: 159 KERFDHILYTGSPGIGKVVMTAAAKHLTPVTLELGGKNPCYVDKDCDLDVACRRIAWGKF 218
Query: 747 MNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSL 926
MN GQTC+ PDY+LC+PS+Q+Q+V+K+K+++KEFYG++ + S DY RI+N RHFQR+ L
Sbjct: 219 MNSGQTCVGPDYILCDPSIQNQIVEKLKKSLKEFYGEDARKSRDYGRIINSRHFQRVMGL 278
Query: 927 LEGQKIPFVG 956
LEGQK+ + G
Sbjct: 279 LEGQKVAYGG 288
Score = 61.2 bits (147), Expect(2) = e-107
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +1
Query: 943 YPSWGDGRSHSLHSPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPG 1122
Y GD + + +PTILTDVDP+ +VM+EEIFGPL+PI+ + + + INQRE+P
Sbjct: 286 YGGTGDAATRYI-APTILTDVDPQSQVMQEEIFGPLMPIVCVGSLEEAIRFINQREKPLA 344
Query: 1123 FY 1128
Y
Sbjct: 345 LY 346
>ref|XP_003353786.1| PREDICTED: LOW QUALITY PROTEIN: aldehyde dehydrogenase family 3
member B1-like [Sus scrofa].
Length = 486
Score = 270 bits (690), Expect(2) = 2e-81
Identities = 133/301 (44%), Positives = 184/301 (61%)
Frame = +3
Query: 57 VQRLRAAFQTGRSXXXXXXXXXXXXXXXXXXEREEXXXXXXXXXXXXXXXNAYSQEVLTI 236
+QRLR AF +GR+ E ++ E+L
Sbjct: 28 LQRLREAFSSGRTRPVEFRATQLKGLGRFLQENKQLLQEALAQDLRKSAFEGDMCEILLC 87
Query: 237 LGEIDLALEKLPEWAAARPAEKNLLTMLDEAYVQPEPLGVMLIIGAWNYPLVLSIQPLXX 416
E+DLAL+ L W +P KNL T LD A+++ EP G++LII WNYP+ L++ PL
Sbjct: 88 QNEVDLALKNLHTWTKDKPVAKNLFTQLDSAFIRKEPFGLVLIIAPWNYPVNLTLMPLVG 147
Query: 417 XXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLLEQRFDHILYT 596
KPSEIS++T K+LA++LP+YLDQ +AV+ GG EET +LLE +FD+I +T
Sbjct: 148 ALAAGNCVVLKPSEISKSTEKVLAEVLPRYLDQSCFAVVLGGPEETGQLLEHKFDYIFFT 207
Query: 597 GSTAVGKIVMEAAAKHLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAP 776
GS VG IVM AAAKHLTPVTLELGGK+PCY+D +CD R+A +Y+N GQTC+AP
Sbjct: 208 GSPRVGXIVMTAAAKHLTPVTLELGGKNPCYVDDNCDPQTVANRVALFRYLNTGQTCVAP 267
Query: 777 DYVLCEPSLQDQVVQKMKEAVKEFYGDNIKDSPDYERIVNLRHFQRIQSLLEGQKIPFVG 956
DY+LC P Q +++ ++ A+ FYGD+ + SPD RI+N +HFQR+Q LL ++ G
Sbjct: 268 DYILCSPETQARLLPALQSAITRFYGDDPRASPDLGRIINHKHFQRLQGLLSCGRVAIGG 327
Query: 957 R 959
+
Sbjct: 328 Q 328
Score = 51.6 bits (122), Expect(2) = 2e-81
Identities = 22/49 (44%), Positives = 34/49 (69%)
Frame = +1
Query: 982 SPTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRERPPGFY 1128
+PT+L DV VM+EEIFGP+LPI+ + ++ ++ IN+RE+P Y
Sbjct: 337 APTVLVDVQETEPVMQEEIFGPILPILNVRGLDEAIDFINRREKPLALY 385
>ref|XP_001925921.3| PREDICTED: aldehyde dehydrogenase family 1 member A3, partial [Sus
scrofa].
Length = 655
Score = 91.7 bits (226), Expect(2) = 7e-24
Identities = 67/209 (32%), Positives = 99/209 (47%), Gaps = 5/209 (2%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYL 509
+ + EP+GV I WN+PL++ + L KP+E + TA L L+ +
Sbjct: 308 FTRHEPIGVCGAITPWNFPLLMLVWKLAPALCCGNTVVVKPAEQTPLTALHLGSLIREVG 367
Query: 510 DQDLYAVINGGVEETTKLL---EQRFDHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGK 677
I G T + + I +TGST VGK+V EAA++ +L VTLELGGK
Sbjct: 368 FPPGVVNIVPGFGPTVGAAISSHPQINKIAFTGSTEVGKLVKEAASRSNLKRVTLELGGK 427
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKE-AVKEFYG 854
+PC + D DLD+A G + N GQ C A V E + + V++ E A K G
Sbjct: 428 NPCIVCADADLDLAVECAHQGVFFNQGQCCTAASRVFVEEQVYSEFVKRSVEYAKKRPVG 487
Query: 855 DNIKDSPDYERIVNLRHFQRIQSLLEGQK 941
D + ++ + F +I L+E K
Sbjct: 488 DPFDVRTEQGPQIDQKQFNKILDLIESGK 516
Score = 37.4 bits (85), Expect(2) = 7e-24
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSINQRE 1110
PT+ ++V ++ +EEIFGP+ PI+ KN + + N E
Sbjct: 538 PTVFSEVTDTMRIAKEEIFGPVQPILKFKNIEEVIKRANSLE 579
>ref|XP_001924895.1| PREDICTED: 4-trimethylaminobutyraldehyde dehydrogenase [Sus
scrofa].
Length = 596
Score = 96.3 bits (238), Expect(2) = 5e-22
Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
Y + EPLGV + IGAWNYP ++ KPS + + +LA++ +
Sbjct: 243 YTRREPLGVCVGIGAWNYPFQIACWKSAPALACGNAMIFKPSPFTPLSVLLLAEIYTEAG 302
Query: 507 LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAAKHLTPVTLELGGKS 680
+ L+ V+ GG T +LL Q D I +TGS G +ME +AK + PVTLELGGKS
Sbjct: 303 VPPGLFNVVQGGAT-TGQLLCQHRDVAKISFTGSVPTGSKIMEMSAKGIKPVTLELGGKS 361
Query: 681 PCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYGD 857
P I DCD+ A + ++ G+ C V + + D+ ++ +K+ + GD
Sbjct: 362 PLIIFSDCDMGNAVKGALMANFLTQGEVCCNGTRVFVQKEILDKFTEEVVKQTQRIKIGD 421
Query: 858 NIKDSPDYERIVNLRHFQRIQSLLEGQK 941
+ + ++N H +RI ++ K
Sbjct: 422 PLLEDTRMGPLINRPHLERILGFVKVAK 449
Score = 26.6 bits (57), Expect(2) = 5e-22
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIM 1062
P +LT+ + ++EEIFGP++ I+
Sbjct: 477 PCVLTNCRDDMTCVKEEIFGPVMSIL 502
>ref|XP_001926622.3| PREDICTED: aldehyde dehydrogenase family 1 member L2, mitochondrial
[Sus scrofa].
Length = 923
Score = 91.3 bits (225), Expect(2) = 1e-21
Identities = 66/223 (29%), Positives = 111/223 (49%), Gaps = 10/223 (4%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKL-LPQY 506
+ + EP+GV II WNYPL++ KP++++ TA A+L +
Sbjct: 579 FTKKEPIGVCAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPLTALKFAELSVKAG 638
Query: 507 LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
+ + +I G + L + D + +TGST +GK +M++ A +L V+LELGGK
Sbjct: 639 FPKGVINIIPGSGGIAGQRLSEHPDIRKLGFTGSTPIGKQIMKSCAVSNLKKVSLELGGK 698
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YG 854
SP I DC+LD A R + N G+ CIA + E S+ D+ V ++ E +K+ G
Sbjct: 699 SPLLIFNDCELDKAVRMGMGAVFFNKGENCIAAGRLFVEESIHDEFVTRVVEEIKKMKIG 758
Query: 855 DNIKDSPDYERIVNLRHFQRI-----QSLLEGQKIPFVGRRTK 968
D + S D+ + H +++ + EG + + GR+ +
Sbjct: 759 DPLDRSTDHGPQNHKAHLEKLLQYCEAGVKEGATLVYGGRQVQ 801
Score = 30.0 bits (66), Expect(2) = 1e-21
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNAN 1080
PT+ TDV+ + +EE FGP++ I +N +
Sbjct: 809 PTVFTDVEDHMYLAKEESFGPIMVISKFRNGD 840
>ref|XP_003353634.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial [Sus scrofa].
Length = 517
Score = 78.2 bits (191), Expect(2) = 3e-18
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 6/210 (2%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
+ + EP+GV I WN+PLV+ L K +E + +A LA L+ +
Sbjct: 170 FTRHEPVGVCGQIIPWNFPLVMQAWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEVG 229
Query: 507 LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
+ ++ G + D + +TGST VG ++ +AA +L VTLELGGK
Sbjct: 230 FPPGVVNILTGYGPTAGTAIAHHMDVNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGK 289
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYG 854
SP + D D+D A + + N GQ C A E S+ D+ +++ +++A + G
Sbjct: 290 SPSIVLADADMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKRRKVG 349
Query: 855 DNIKDSPDYERIVNLRHFQRIQSLLE-GQK 941
+ + VN F+RI ++ GQK
Sbjct: 350 NPFELDTQQGPQVNKEQFERILGYIQLGQK 379
Score = 31.6 bits (70), Expect(2) = 3e-18
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT+ V + ++ +EEIFGP+ P+ K + + N
Sbjct: 400 PTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERAN 438
>ref|XP_003353633.1| PREDICTED: aldehyde dehydrogenase X, mitochondrial-like [Sus
scrofa].
Length = 517
Score = 78.2 bits (191), Expect(2) = 3e-18
Identities = 60/210 (28%), Positives = 98/210 (46%), Gaps = 6/210 (2%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
+ + EP+GV I WN+PLV+ L K +E + +A LA L+ +
Sbjct: 170 FTRHEPVGVCGQIIPWNFPLVMQAWKLAPALATGNTVVMKVAEQTPLSALYLASLIKEVG 229
Query: 507 LDQDLYAVINGGVEETTKLLEQRFD--HILYTGSTAVGKIVMEAAA-KHLTPVTLELGGK 677
+ ++ G + D + +TGST VG ++ +AA +L VTLELGGK
Sbjct: 230 FPPGVVNILTGYGPTAGTAIAHHMDVNKVAFTGSTEVGHLIQKAAGDSNLKRVTLELGGK 289
Query: 678 SPCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQK-MKEAVKEFYG 854
SP + D D+D A + + N GQ C A E S+ D+ +++ +++A + G
Sbjct: 290 SPSIVLADADMDHAVEQCHEALFFNMGQCCCAGSRTFVEESIYDEFLERTVEKAKRRKVG 349
Query: 855 DNIKDSPDYERIVNLRHFQRIQSLLE-GQK 941
+ + VN F+RI ++ GQK
Sbjct: 350 NPFELDTQQGPQVNKEQFERILGYIQLGQK 379
Score = 31.6 bits (70), Expect(2) = 3e-18
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT+ V + ++ +EEIFGP+ P+ K + + N
Sbjct: 400 PTVFGGVQDDMRIAKEEIFGPVQPLFKFKRIEEVIERAN 438
>ref|XP_003121238.2| PREDICTED: aldehyde dehydrogenase family 8 member A1-like [Sus
scrofa].
Length = 483
Score = 66.2 bits (160), Expect(2) = 6e-16
Identities = 45/209 (21%), Positives = 93/209 (44%), Gaps = 4/209 (1%)
Frame = +3
Query: 330 YVQPEPLGVMLIIGAWNYPLVLSIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQY- 506
Y P+G+ +I WN PL L + KPSE++ TA ++ KLL +
Sbjct: 135 YTVRTPVGIAGLISPWNLPLYLLTWKIAPAIAAGNTVIAKPSELTSVTAWMMCKLLEKAG 194
Query: 507 LDQDLYAVINGGVEETTKLL--EQRFDHILYTGSTAVGKIVMEAAAKHLTPVTLELGGKS 680
+ + ++ G + L I +TGS + + + +A H ++LELGGK+
Sbjct: 195 VPPGVVNIVFGTGPRAGEALVSHPEVPLISFTGSQPTAERITQLSAPHCKKLSLELGGKN 254
Query: 681 PCYIDPDCDLDVACRRIAWGKYMNCGQTCIAPDYVLCEPSLQDQVVQKMKEAVKEF-YGD 857
P I D +L+ + N G+ C+ + + S+ + +++ +A + + G
Sbjct: 255 PAIIFEDANLEECVPTTVRSSFANQGEICLCTSRIFVQRSIYSEFLKRFVDATRMWKVGI 314
Query: 858 NIKDSPDYERIVNLRHFQRIQSLLEGQKI 944
S +++ H ++++S ++ ++
Sbjct: 315 PSDPSASMGALISKAHLEKVRSYIKKARL 343
Score = 35.8 bits (81), Expect(2) = 6e-16
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 985 PTILTDVDPEPKVMREEIFGPLLPIMPGKNANQTLNSIN 1101
PT++TD+ E M+EEIFGP+ ++P + + + N
Sbjct: 371 PTVITDIKDESCCMKEEIFGPVTCVVPFDSEEEVIQRAN 409
>ref|XP_003359162.1| PREDICTED: aldehyde dehydrogenase, mitochondrial-like isoform 2
[Sus scrofa].
Length = 474
Score = 73.2 bits (178), Expect = 3e-13
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 7/207 (3%)
Frame = +3
Query: 225 VLTILGEIDLALEKLPEWAAARPAEKNLLTMLDE---AYVQPEPLGVMLIIGAWNYPLVL 395
V++ L ++D+ L+ L +A +D +Y + EP+GV I WN+PL++
Sbjct: 89 VISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLM 148
Query: 396 SIQPLXXXXXXXXXXXXKPSEISENTAKILAKLLPQYLDQDLYAVINGGVEETTKLL--- 566
L K SE + TA +A L+ + I G T
Sbjct: 149 QAWKLGPALATGNVVVMKVSEQTPLTALYVANLIKEAGFPPGVVNIVPGYGPTAGAAIAS 208
Query: 567 EQRFDHILYTGSTAVGKIVMEAAAK-HLTPVTLELGGKSPCYIDPDCDLDVACRRIAWGK 743
+ D + +TGST VG ++ AA K +L VTLELGGKSP I D D+D A + +
Sbjct: 209 HEDVDKVAFTGSTEVGHLIQVAAGKSNLKRVTLELGGKSPNIIMSDADMDWAVEQAHFAL 268
Query: 744 YMNCGQTCIAPDYVLCEPSLQDQVVQK 824
+ N GQ C A + + + V++
Sbjct: 269 FFNQGQCCCAGSRTFVQEDIYAEFVER 295
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,722,610
Number of extensions: 722720
Number of successful extensions: 2801
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2783
Number of HSP's successfully gapped: 22
Length of query: 376
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 275
Effective length of database: 8,829,335
Effective search space: 2428067125
Effective search space used: 2428067125
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007404
(1128 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 458 e-126
>Sscrofa_Chr12
|| Length = 63588571
Score = 458 bits (231), Expect = e-126
Identities = 234/235 (99%)
Strand = Plus / Plus
Query: 196 agagcaaactcaatgcctacagtcaagaagtccttacgattcttggggaaattgatctgg 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62593998 agagcaaactcaatgcctacagtcaagaagtccttacgattcttggggaaattgatctgg 62594057
Query: 256 cgctggagaagcttcccgaatgggctgcagctcggccagcggagaagaacctgctaacca 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62594058 cgctggagaagcttcccgaatgggctgcagctcggccagcggagaagaacctgctaacca 62594117
Query: 316 tgcttgacgaggcctatgtccagccagagcccctgggtgtcatgctgatcattggcgcgt 375
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62594118 tgcttgacgaggcgtatgtccagccagagcccctgggtgtcatgctgatcattggcgcgt 62594177
Query: 376 ggaactaccccttggttctctccatccagcctctgataggagccatcgctgcagg 430
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62594178 ggaactaccccttggttctctccatccagcctctgataggagccatcgctgcagg 62594232
Score = 369 bits (186), Expect = 2e-99
Identities = 203/211 (96%)
Strand = Plus / Plus
Query: 514 aggacctgtacgctgtcatcaatggcggcgtcgaggaaaccacgaagctgctggagcagc 573
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 62596294 aggacctgtacgctgtcatcaatggcggcgttgaggaaaccacgaagctgctggagcagc 62596353
Query: 574 gatttgaccacattctctacacgggaagcaccgcggtggggaagattgtcatggaagccg 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62596354 gatttgaccacattctctacacgggaagcaccgcggtggggaagattgtcatggaagccg 62596413
Query: 634 ctgccaagcatttgacccctgtgacccttgaactnnnnnnnaagagcccgtgttacattg 693
|||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 62596414 ctgccaagcatttgacccctgtgacccttgaactgggggggaagagcccgtgttacattg 62596473
Query: 694 acccagactgtgacctggacgtcgcctgcag 724
|||||||||||||||||||||||||||||||
Sbjct: 62596474 acccagactgtgacctggacgtcgcctgcag 62596504
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 35 aggaccggccatggagcgcgaagtccagcgattgcgcgccgcgttccagacgggccgatc 94
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62592167 aggaccggccatggagcgcgaagtccagcgattgcgcgccgcgttccagacgggccgatc 62592226
Query: 95 gcgccctctggccttccggctgcagcagctccaggccctgcgcaggatggtgcaggagcg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62592227 gcgccctctggccttccggctgcagcagctccaggccctgcgcaggatggtgcaggagcg 62592286
Query: 155 cgaggaggacctgctggcggccatcgccgcggatctgagcaag 197
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62592287 cgaggaggacctgctggcggccatcgccgcggatctgagcaag 62592329
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Plus
Query: 722 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62597511 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 62597570
Query: 782 cgtcctctgcgagccgtccctccaggaccaggtcgtgcagaagatgaaggaagccgtgaa 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62597571 cgtcctctgcgagccgtccctccaggaccaggtcgtgcagaagatgaaggaagccgtgaa 62597630
Query: 842 gg 843
||
Sbjct: 62597631 gg 62597632
Score = 238 bits (120), Expect = 5e-60
Identities = 139/144 (96%), Gaps = 1/144 (0%)
Strand = Plus / Plus
Query: 841 aggaattttatggagataatataaaagactctccggactatgaaaggatcgtcaatctcc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62599386 aggaattttatggagataatataaaagactctccggactatgaaaggatcgtcaatctcc 62599445
Query: 901 gtcattttcagaggatacagagtctgctcgagggacagaagatacccttc-gtggggaga 959
||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 62599446 gtcatttcaagaggatacagagtctgctcgagggacagaagatagccttcggtggggaga 62599505
Query: 960 cggacgaagccactcgctacatag 983
||||||| ||||||||||||||||
Sbjct: 62599506 cggacgaggccactcgctacatag 62599529
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 428 aggaaacgcggtgattatcaaaccttccgaaatcagcgaaaatacagccaagatcttggc 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62594875 aggaaacgcggtgattatcaaaccttccgaaatcagcgaaaatacagccaagatcttggc 62594934
Query: 488 gaagctcctcccccagtatttagaccagg 516
|||||||||||||||||||||||||||||
Sbjct: 62594935 gaagctcctcccccagtatttagaccagg 62594963
Score = 145 bits (73), Expect = 6e-32
Identities = 124/141 (87%)
Strand = Plus / Plus
Query: 988 acaatacttaccgatgttgatcctgaacccaaggtgatgcgagaagagatttttggaccc 1047
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 62600531 acaatacttaccgatgttgatcctgaagccaaggtgatgcgagaagagatttttggaccc 62600590
Query: 1048 cttcttccaataatgcctggtaagaatgccaaccaaaccctaaattccataaaccaacgt 1107
||||||||||| |||||| |||||||| || || || |||| | ||||||| |||||
Sbjct: 62600591 attcttccaatagtgcctgtgaagaatgcagacgaagccgtaaaattcataaacgaacgt 62600650
Query: 1108 gaaagacccccgggtttctac 1128
|||| |||| || |||||||
Sbjct: 62600651 gaaaagcccctggctttctac 62600671
Score = 73.8 bits (37), Expect = 2e-10
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 1 gttggtggcggcggagcgagcgcgctcgggaccgagg 37
|||||||||||||||||||||||||||||||||||||
Sbjct: 62591997 gttggtggcggcggagcgagcgcgctcgggaccgagg 62592033
Score = 73.8 bits (37), Expect = 2e-10
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 722 cagacgcatcgcctgggggaagtacatgaactgcgggcagacctgcatcgcccccgacta 781
|||||||||||||||||| |||| ||||||| |||| ||||||||| | | |||||||||
Sbjct: 62642203 cagacgcatcgcctggggcaagttcatgaacagcggccagacctgcgtgggccccgacta 62642144
Query: 782 cgtcctctg 790
| |||||||
Sbjct: 62642143 catcctctg 62642135
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,568,360
Number of extensions: 140
Number of successful extensions: 140
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 9
Length of query: 1128
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1107
Effective length of database: 2,808,413,156
Effective search space: 3108913363692
Effective search space used: 3108913363692
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)