Animal-Genome cDNA 20110601C-007409

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007409
         (1494 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase,...   688   0.0  
Alignment   gi|NP_001017933.1| short/branched chain specific acyl-CoA dehyd...   246   4e-65
Alignment   gi|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase...   239   4e-63
Alignment   gi|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial ...   236   5e-62
Alignment   gi|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial ...   229   6e-60
Alignment   gi|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mito...   203   4e-52
Alignment   gi|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase...   185   8e-47
Alignment   gi|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, ...   180   3e-45
Alignment   gi|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial pr...   167   2e-41
Alignment   gi|NP_001179221.1| acyl-CoA dehydrogenase family member 10 [Bos...   122   1e-27

>ref|NP_001029573.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Bos taurus].
          Length = 412

 Score =  688 bits (1775), Expect = 0.0
 Identities = 351/412 (85%), Positives = 363/412 (88%)
 Frame = +2

Query: 71   MAAALLARACGPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQV 250
            MAA LLARACG VRGA WP   RRLHT++QSVELPET+QMLRQTCRDFAEKEL PIAAQV
Sbjct: 1    MAATLLARACGLVRGAPWPWGWRRLHTVYQSVELPETHQMLRQTCRDFAEKELFPIAAQV 60

Query: 251  DKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNN 430
            DKEHRFP AQVKKMGELGLMAM+VPEELSGAGLDYLAY+IAMEEISRGCASTGVIMSVNN
Sbjct: 61   DKEHRFPAAQVKKMGELGLMAMNVPEELSGAGLDYLAYSIAMEEISRGCASTGVIMSVNN 120

Query: 431  SLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLS 610
            SLYLGPILKFG+KEQKQQW+ PFTSGDK+GCFALSEPGNGSD          D DSWVLS
Sbjct: 121  SLYLGPILKFGTKEQKQQWVAPFTSGDKIGCFALSEPGNGSDAGAAATTARADGDSWVLS 180

Query: 611  GTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN 790
            GTKAWITNAWEASA VVFASTDRSL NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN
Sbjct: 181  GTKAWITNAWEASAVVVFASTDRSLHNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN 240

Query: 791  LIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAF 970
            LIFED RIPK++LLGEPG+GFKIAMQTLD GRIGIASQALGIAQAALDCAV YAENR AF
Sbjct: 241  LIFEDRRIPKDSLLGEPGLGFKIAMQTLDTGRIGIASQALGIAQAALDCAVTYAENRSAF 300

Query: 971  GVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXX 1150
            G PLTKLQ IQFKLADMALALESARLLTWRAAMLKDNKKPF KE                
Sbjct: 301  GAPLTKLQAIQFKLADMALALESARLLTWRAAMLKDNKKPFTKEAAMAKLAASEAATAIT 360

Query: 1151 XXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 1306
               MQILGGMGYV EMPAERHYRDARITEIYEGTSEIQRLV+AGHLLKSYRS
Sbjct: 361  HQAMQILGGMGYVKEMPAERHYRDARITEIYEGTSEIQRLVVAGHLLKSYRS 412


>ref|NP_001017933.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
            [Bos taurus].
          Length = 432

 Score =  246 bits (628), Expect = 4e-65
 Identities = 132/371 (35%), Positives = 217/371 (58%)
 Frame = +2

Query: 188  MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 367
            M++   + FA++++ P  +++D++ +  ++ ++ + + GLM +++  +  G G  + +  
Sbjct: 63   MIKSAVKKFAQEQVAPFVSKMDEDSKMEKSVIQGLFQQGLMGIEIDTKYGGTGASFFSSV 122

Query: 368  IAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 547
            + +EE+++  AS  ++  + N+L    I K+G++EQK  ++ P  + +K     +SE G 
Sbjct: 123  LVIEELAKVDASVALVCDIQNTLINRMIGKYGTEEQKATYL-PKLATEKASSICISETGA 181

Query: 548  GSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT 727
            GSD            D ++++G+K WI++A  A   VV A+ D S   KGI+ FLV   T
Sbjct: 182  GSDSFAMKTRADKKGDYYIINGSKMWISSAEIAGLFVVMANADFSAGYKGITCFLVDGDT 241

Query: 728  PGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQA 907
             GL +GK E+KLGIRASST  + FE+ ++PK N+LG+ G G+K A+ +L+ GRIGIA+Q 
Sbjct: 242  EGLHVGKPENKLGIRASSTCPVTFENVKVPKTNILGQVGHGYKYAIGSLNEGRIGIAAQM 301

Query: 908  LGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK 1087
            LG+AQ   D  + Y + R+ FG  +   QG+Q ++A MA  LE+ARLLT+ AA L +  +
Sbjct: 302  LGVAQGCFDYTIPYIKERKQFGRRVFDFQGLQHQVAHMATQLEAARLLTYNAARLLEAGR 361

Query: 1088 PFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQR 1267
            P IKE                   ++ +GG+GY    P E+++RDA+I  IYEGTS IQ 
Sbjct: 362  PMIKEASMAKYHASELAGLITSKCIEWMGGVGYTKSYPVEKYFRDAKIGTIYEGTSNIQL 421

Query: 1268 LVIAGHLLKSY 1300
              IA  +   Y
Sbjct: 422  NTIAKCISAEY 432


>ref|NP_001068703.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Bos taurus].
          Length = 421

 Score =  239 bits (611), Expect = 4e-63
 Identities = 152/421 (36%), Positives = 226/421 (53%), Gaps = 13/421 (3%)
 Frame = +2

Query: 80   ALLARACGPVRGALWPRDCRRLHTIFQ---------SVELPETYQMLRQTCRDFAEKELV 232
            AL  R+CG +R +L   D R  HT            S E  E  +  + T R FA +E++
Sbjct: 3    ALFRRSCGVLR-SLSHFDWRSQHTKTALQREPGSGFSFEFTEQQKEFQATARKFAREEII 61

Query: 233  PIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGV 412
            P+AA+ DK   +P   +K+  ELGLM   +PE   G GL      +  EE++ GC  TGV
Sbjct: 62   PLAAEYDKTGEYPVPLIKRAWELGLMNTHIPESCGGLGLGTFDSCLISEELAYGC--TGV 119

Query: 413  IMSVN-NSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXD 589
              ++  NSL   P++  G+ +Q+++++   T    +  + ++EP  GSD           
Sbjct: 120  QTAIEANSLGQMPVIIAGNDQQQKKYLGRMTEEPLMCAYCVTEPVAGSDVAGIKTKAEKK 179

Query: 590  HDSWVLSGTKAWITNAWEASAAVVFASTD---RSLQNKGISAFLVPMPTPGLTLGKKEDK 760
             D ++++G K WITN  +A+   + A +D   ++  +K  + F+V   TPG+ +G+KE  
Sbjct: 180  GDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKELN 239

Query: 761  LGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCA 940
            +G R S T  ++FED R+PKEN+L   G GFKIAM   D  R  +A+ A+G+AQ ALD A
Sbjct: 240  MGQRCSDTRGIVFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAAAAVGLAQRALDEA 299

Query: 941  VNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXX 1120
              YA  R+ FG  L + QGI F LA+MA+ +E ARL   RAA   D+ +           
Sbjct: 300  TKYALERKTFGKLLIEHQGISFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYYASIAKA 359

Query: 1121 XXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSY 1300
                         +QI GG G+ TE P E+  RDA+I +IYEGT++IQRL+IA   +  Y
Sbjct: 360  YAGDIANQLASDAVQIFGGNGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIGRY 419

Query: 1301 R 1303
            +
Sbjct: 420  K 420


>ref|NP_001029554.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
          Length = 426

 Score =  236 bits (601), Expect = 5e-62
 Identities = 134/373 (35%), Positives = 201/373 (53%), Gaps = 4/373 (1%)
 Frame = +2

Query: 170  LPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGELGLMAMDVPEELSGA 343
            L E  + LRQT   F ++ L P A ++D+ + F   +   K++G LG++ +  P +  G+
Sbjct: 45   LNEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 104

Query: 344  GLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGC 523
            GL +L   + MEEISR   + G+    +++L +  I++ G++ QK++++    SG+ +G 
Sbjct: 105  GLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGA 164

Query: 524  FALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSL--QNKG 697
             A+SEP  GSD            D +VL+G K WITN  +A   VV+A TD +    ++G
Sbjct: 165  LAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRG 224

Query: 698  ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLD 877
            I+AF+V    PG +  KK DKLG+R S+T  L+FEDC +P  N+LG  G G  + M  LD
Sbjct: 225  ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCEVPAANILGHLGKGVYVLMSGLD 284

Query: 878  MGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTW 1057
            + R+ +A   LGI QA LD  + Y   R AFG  +   Q +Q K+ADM   L + R   +
Sbjct: 285  LERLVLAGGPLGIMQAVLDHTIPYLHMREAFGQKIGHFQLMQGKMADMYTRLMACRQYVY 344

Query: 1058 RAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITE 1237
              A   D      K+                   +Q LGG GY+ + P  R  RDA++ E
Sbjct: 345  NVAKACDEGHCTTKDCAGVILYSAECATQVALDGIQCLGGNGYINDFPMGRFLRDAKLYE 404

Query: 1238 IYEGTSEIQRLVI 1276
            I  GTSE++RLVI
Sbjct: 405  IGAGTSEVRRLVI 417


>ref|NP_001069019.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
          Length = 416

 Score =  229 bits (583), Expect = 6e-60
 Identities = 142/406 (34%), Positives = 225/406 (55%), Gaps = 4/406 (0%)
 Frame = +2

Query: 89   ARACGPVRGALWPRDCRR---LHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQVDKE 259
            AR  G  RG   P D  R   +  I  S+ L E  +  ++   +FA +E+ P  A+ D++
Sbjct: 12   ARLRGLRRGPRGPADGARRGVVSCIDPSMGLSEEQKEFQKVAFNFAAREMAPHMAEWDQK 71

Query: 260  HRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLY 439
              FP   ++K  +LG   + V  ++ GAGL  L  +I  E ++ GC ST   MS++N + 
Sbjct: 72   ELFPVDTMRKAAQLGFGGVYVQTDVGGAGLSRLDTSIIFEALATGCTSTTAYMSIHN-MC 130

Query: 440  LGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTK 619
            +  I +FGS+EQ+ +   P  + +K   + L+EPG+GSD           HD ++L+G+K
Sbjct: 131  VWIIDRFGSEEQRHRLCPPLCTMEKFASYCLTEPGSGSDAASLMTSAVRQHDHYILNGSK 190

Query: 620  AWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIF 799
            A+I+   EA   VV   T      +GIS  +V   TPGL+ GKKE K+G  +  T  +IF
Sbjct: 191  AFISGGGEADIYVVMCRTGGP-GPRGISCVVVEKGTPGLSFGKKEKKVGWNSQPTQAVIF 249

Query: 800  EDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVP 979
            EDC +P  N +G+ G GF IAM+ L+ GRI +AS +LG A A++  A +Y + R+ FG P
Sbjct: 250  EDCAVPVANRIGDEGQGFLIAMKGLNGGRINVASCSLGAAHASIVLARDYLKVRKQFGEP 309

Query: 980  LTKLQGIQFKLADMALALESARLLTWRAA-MLKDNKKPFIKEXXXXXXXXXXXXXXXXXX 1156
            L   Q +QF+LADMA  L ++RL+   AA  L++ ++  I                    
Sbjct: 310  LANSQYLQFQLADMAARLVASRLMIRTAATALQEEREDAIVLCSMAKLFATDECFAICNQ 369

Query: 1157 XMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLK 1294
             +Q+ GG GY+ +   +++ RD+R+ +I EG++E+ R++I+  LL+
Sbjct: 370  ALQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISRSLLQ 415


>ref|NP_001071544.1| acyl-CoA dehydrogenase family member 9, mitochondrial [Bos taurus].
          Length = 594

 Score =  203 bits (516), Expect = 4e-52
 Identities = 141/382 (36%), Positives = 201/382 (52%), Gaps = 11/382 (2%)
 Frame = +2

Query: 167  ELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAG 346
            EL E  Q L    + F E+     + ++D+E + P+  ++K+  LGL  M VPEE  G G
Sbjct: 62   ELNEINQFLGPVEKFFTEEV---DSRKIDQEGKIPDETLEKLKSLGLFGMQVPEEYGGLG 118

Query: 347  LDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCF 526
            L    Y    E I    AS  V ++ + S+ L  I+  GSKEQK +++    SG+ V  F
Sbjct: 119  LSNTMYARLAEVIGLD-ASIAVTLAAHQSIGLKGIILAGSKEQKARYLPRLASGEHVAAF 177

Query: 527  ALSEPGNGSDXXXXXXXXXXDHDS--WVLSGTKAWITNAWEASAAVVFAST-----DRSL 685
             L+EP +GSD            D   +VL+G+K W+TN   A+   VFA T     D S+
Sbjct: 178  CLTEPASGSDAASIRTRATLSADKSHYVLNGSKVWVTNGGLANVFTVFAKTEVVDSDGSV 237

Query: 686  QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAM 865
            ++K I+AF+V     G+T GK EDK+GIR S+T  + FE+ R+P EN+LGE G GFK+A+
Sbjct: 238  KDK-ITAFIVERDFGGVTNGKAEDKMGIRGSNTCEVHFENTRVPVENVLGEVGGGFKVAV 296

Query: 866  QTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFK---LADMALALE 1036
              L+ GR  + S   G+ +  ++    YA  R+ F   L++   IQ K   +A  A  +E
Sbjct: 297  NILNSGRFSMGSMVAGMLKKLIEMTAEYACTRKQFNRNLSEFGLIQEKFSLMAQKAYVME 356

Query: 1037 SARLLTWRAAMLKDNKKPFIK-EXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERH 1213
            S   LT  AAML     P    E                   +QILGG+GY+ + P ER 
Sbjct: 357  SMAYLT--AAMLDAPGFPDCSIEAAMVKVFSSEGAWTCVSEALQILGGLGYMRDYPYERL 414

Query: 1214 YRDARITEIYEGTSEIQRLVIA 1279
             RD+RI  I+EGT+EI R+ IA
Sbjct: 415  LRDSRILLIFEGTNEILRMYIA 436


>ref|NP_776919.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            precursor [Bos taurus].
          Length = 655

 Score =  185 bits (470), Expect = 8e-47
 Identities = 122/360 (33%), Positives = 180/360 (50%), Gaps = 8/360 (2%)
 Frame = +2

Query: 224  ELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCAS 403
            E V  AA+ D   R  E  ++ + ELG   + VP EL G GL    Y   +E +      
Sbjct: 114  EEVNDAAKNDMLERVEETTMQGLKELGAFGLQVPNELGGVGLCNTQYARLVEIVGMYDLG 173

Query: 404  TGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXX 583
             G+++  + S+    IL FG+K QK++++    SG+ +  F L+EP +GSD         
Sbjct: 174  VGIVLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETIAAFCLTEPSSGSDAASIRSSAV 233

Query: 584  XDHDS--WVLSGTKAWITNAWEASAAVVFASTDRSLQNKG-----ISAFLVPMPTPGLTL 742
                   + L+G+K WI+N   A    VFA T  +    G     I+AF+V     G+T 
Sbjct: 234  PSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPVTDTATGAVKEKITAFVVERSFGGVTH 293

Query: 743  GKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQ 922
            G  E K+GI+AS+TA + F+  R+P EN+LGE G GFK+AM  L+ GR G+A+   G  +
Sbjct: 294  GPPEKKMGIKASNTAEVYFDGVRVPAENVLGEVGGGFKVAMHILNNGRFGMAAALAGTMK 353

Query: 923  AALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR-AAMLKDNKKPFIK 1099
              +  AV++A NR  FG  +     IQ KLA MA+       + +  +A +      F  
Sbjct: 354  GIIAKAVDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQGSTDFQI 413

Query: 1100 EXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
            E                   +QI+GGMG++ E   ER  RD RI  I+EGT++I RL +A
Sbjct: 414  EAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 473


>ref|NP_001070404.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial [Bos
            taurus].
          Length = 430

 Score =  180 bits (456), Expect = 3e-45
 Identities = 108/372 (29%), Positives = 183/372 (49%), Gaps = 2/372 (0%)
 Frame = +2

Query: 182  YQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLA 361
            + + R++ R F ++E++P  A+ +K         +K G+ GL+ + + +   G G D  +
Sbjct: 57   HDIFRESVRKFFQEEVIPYHAEWEKAGEVSRELWEKAGKQGLLGISIADHHGGIGGDLYS 116

Query: 362  YTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEP 541
              I  EE +     TG    +++ + +  I  +GS+EQ +++I    +G  +G  A++EP
Sbjct: 117  SAIVWEEQAYSNC-TGPGFGLHSDIVMPYITNYGSEEQIKRFIPEMVAGKCIGAIAMTEP 175

Query: 542  GNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNK--GISAFLV 715
            G GSD          D   W+L+G+K ++TN W     ++ A T+R   +   GIS FLV
Sbjct: 176  GAGSDLQGIRTNAKKDGSDWILNGSKVFVTNGWLCDIVIIVAITNREAHSPAHGISLFLV 235

Query: 716  PMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGI 895
                 G   G+K DK+G++A  TA   FED R+P   LLGE   G+   MQ L   R+ I
Sbjct: 236  ENGMKGFIKGRKLDKIGLKAQDTAEFFFEDVRLPAGALLGEENKGYYYLMQELPQERLLI 295

Query: 896  ASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLK 1075
            +  A+  ++   +   +Y + R+AFG  +  LQ ++ KLA++  ++   R        L 
Sbjct: 296  SEIAVSASEFMFEETRDYVKQRKAFGKTVADLQTVKHKLAELKTSICVTRAFVDSCLQLH 355

Query: 1076 DNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTS 1255
              K+  +                     +Q+ GG GY+ E P  + Y DAR+  IY GT+
Sbjct: 356  RVKRLDVATAAMAKYWASDLQNRVAYDCLQLHGGWGYMFECPIAKAYVDARVQTIYGGTN 415

Query: 1256 EIQRLVIAGHLL 1291
            EI + +IA  ++
Sbjct: 416  EIMKELIAREII 427


>ref|NP_001039404.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Bos taurus].
          Length = 438

 Score =  167 bits (424), Expect = 2e-41
 Identities = 117/366 (31%), Positives = 176/366 (48%), Gaps = 3/366 (0%)
 Frame = +2

Query: 188  MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 367
            ++R T R + ++ L+P     ++   F    + +MGELG++   + +  S AG+  +AY 
Sbjct: 66   LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGMLGPTI-QGYSCAGVSSVAYG 124

Query: 368  IAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 547
            +   E+ R  +     MSV +SL + PI  +GS+EQKQ+++     G+ +GCF L+EP +
Sbjct: 125  LLARELERVDSGYRSAMSVQSSLVMYPIYAYGSEEQKQKYLPRLAKGELLGCFGLTEPNH 184

Query: 548  GSDXXXXXXXXXXDHD--SWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPM 721
            GSD          +    S++LSG+K WITN+  A   +V+A  + S     I  FL+  
Sbjct: 185  GSDPSGMETRARHNPSSRSYILSGSKTWITNSPVADLLIVWARCEDSC----IRGFLLEK 240

Query: 722  PTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGM-GFKIAMQTLDMGRIGIA 898
               GL+  + E K  +RASST  +I +D  +P+EN+L  PG+ G       L+  R GI 
Sbjct: 241  GMRGLSTPRIEGKFSLRASSTGMIIMDDVEVPEENVL--PGVSGLAGPFGCLNNARYGIT 298

Query: 899  SQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKD 1078
               LG A+  L  A  Y  +R  FGVPL K Q IQ KLADM   +        +   LKD
Sbjct: 299  WGVLGAAEFCLHTARQYTLDRIQFGVPLAKNQLIQKKLADMLTEITLGLHACLQLGRLKD 358

Query: 1079 NKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSE 1258
              K   +                      +LGG G   E    RH  +      YEGT +
Sbjct: 359  QDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHVMNLESVNTYEGTHD 418

Query: 1259 IQRLVI 1276
            I  L++
Sbjct: 419  IHALIL 424


>ref|NP_001179221.1| acyl-CoA dehydrogenase family member 10 [Bos taurus].
          Length = 1055

 Score =  122 bits (305), Expect = 1e-27
 Identities = 111/409 (27%), Positives = 178/409 (43%), Gaps = 26/409 (6%)
 Frame = +2

Query: 152  IFQSVELPETYQMLRQTCRDFAEKELVPIAA-----QVDKEHRFPEAQVKKMGE------ 298
            IF    LP   + L Q  ++F E+ + P        QV  E   P   V+ + E      
Sbjct: 649  IFSPEGLPHRVRELYQKLKEFMERHVYPAEPELQRHQVSAERWTPSPLVEDLKEKAKAEG 708

Query: 299  ---LGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVI-MSVNNSLYLGPILKFGS 466
               L L     PE+  GAGL  + Y    E +     +  +   S  ++  +  ++++G+
Sbjct: 709  LWNLFLPLETDPEKKYGAGLTNMEYAHLCEVMGTSLYAPEIFNCSAPDTGNMELLVRYGT 768

Query: 467  KEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS-WVLSGTKAWITNAWE 643
            +EQK +W+ P   G    CFA++EP   S           + D  +V++G K WIT   +
Sbjct: 769  EEQKARWLIPLLEGKARSCFAMTEPQVASSDATNIESSIREEDGFYVINGHKWWITGILD 828

Query: 644  --ASAAVVFASTD-RSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN--LIFEDC 808
                  V    TD  + +++  S  LVPM TPG+ + +     G+  +   +  ++FE  
Sbjct: 829  PRCQLCVFMGKTDPHAPRHQQQSILLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVLFEQV 888

Query: 809  RIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTK 988
             +PKEN++  PG GF+IA   L  GRI    + +G ++ AL       ++R AFG PL +
Sbjct: 889  CVPKENIILGPGRGFEIAQGRLGPGRIHHCMRLIGCSERALALMKARVKSRVAFGKPLVE 948

Query: 989  LQGIQFKLADMALA---LESARLLTWRAAMLKD--NKKPFIKEXXXXXXXXXXXXXXXXX 1153
             QG    LAD+AL+   +E ARLL  +AA + D    K    +                 
Sbjct: 949  -QGT--VLADIALSRVEIEQARLLVLKAAHVMDVVGNKAAALDIAMIKMVAPSMASRVID 1005

Query: 1154 XXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSY 1300
              +Q  G  G  +  P  + +  AR     +G  E+ R  +A   LK +
Sbjct: 1006 RAIQAFGAAGLSSNYPLAQFFAGARALRFADGPDEVHRAAVAKMELKHH 1054


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,325,721
Number of extensions: 1862818
Number of successful extensions: 8358
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 8289
Number of HSP's successfully gapped: 18
Length of query: 498
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 392
Effective length of database: 14,174,046
Effective search space: 5556226032
Effective search space used: 5556226032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007409
         (1494 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534712.2| PREDICTED: similar to Acyl-CoA dehydrogenase, s...   671   0.0  
Alignment   gi|XP_535048.2| PREDICTED: similar to Acyl-CoA dehydrogenase, s...   243   3e-64
Alignment   gi|XP_547328.2| PREDICTED: similar to Acyl-CoA dehydrogenase, m...   233   4e-61
Alignment   gi|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogen...   231   2e-60
Alignment   gi|XP_857956.1| PREDICTED: similar to Isovaleryl-CoA dehydrogen...   224   2e-58
Alignment   gi|XP_536524.2| PREDICTED: similar to Acyl-CoA dehydrogenase fa...   211   2e-54
Alignment   gi|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydroge...   191   2e-48
Alignment   gi|XP_536053.2| PREDICTED: similar to acyl-Coenzyme A dehydroge...   184   2e-46
Alignment   gi|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v...   184   3e-46
Alignment   gi|XP_857195.1| PREDICTED: similar to Acyl-CoA dehydrogenase, v...   184   3e-46

>ref|XP_534712.2| PREDICTED: similar to Acyl-CoA dehydrogenase, short-chain specific,
            mitochondrial precursor (SCAD) (Butyryl-CoA
            dehydrogenase) [Canis familiaris].
          Length = 404

 Score =  671 bits (1731), Expect = 0.0
 Identities = 340/402 (84%), Positives = 359/402 (89%)
 Frame = +2

Query: 101  GPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQ 280
            GP+   L PRD R+ HT++QSVELPET+QMLRQTCR+FAEKELVPIAAQVDKEHRFP+AQ
Sbjct: 5    GPL--TLRPRDWRQFHTVYQSVELPETHQMLRQTCREFAEKELVPIAAQVDKEHRFPKAQ 62

Query: 281  VKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKF 460
            VKKMGELGL+AMDVPEE SGAGLDYLAY IAMEEISRGCASTGVIMSVNNSLYLGPILKF
Sbjct: 63   VKKMGELGLLAMDVPEEFSGAGLDYLAYAIAMEEISRGCASTGVIMSVNNSLYLGPILKF 122

Query: 461  GSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAW 640
            GSKEQKQQWITPFTSGDK+GCFALSEPGNGSD          D D+W+L+GTKAWITN+W
Sbjct: 123  GSKEQKQQWITPFTSGDKIGCFALSEPGNGSDAGAASTTAQADGDAWILNGTKAWITNSW 182

Query: 641  EASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPK 820
            EASAAVVFASTDRSLQNKGISAFLVPMPT GLTLGKKEDKLGIRASSTANLIFEDCRIPK
Sbjct: 183  EASAAVVFASTDRSLQNKGISAFLVPMPTSGLTLGKKEDKLGIRASSTANLIFEDCRIPK 242

Query: 821  ENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGI 1000
            ++LLGEPGMGFKIAMQTLDMGRIGIA+QALGIAQAALDCAVNYAENRRAFG PLTKLQ I
Sbjct: 243  DSLLGEPGMGFKIAMQTLDMGRIGIAAQALGIAQAALDCAVNYAENRRAFGAPLTKLQSI 302

Query: 1001 QFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGM 1180
            QFKLADMALALESARLLTWRAAMLKD K+PF KE                   +QILGGM
Sbjct: 303  QFKLADMALALESARLLTWRAAMLKDKKQPFTKEAAMAKLAASEAATAISHQAIQILGGM 362

Query: 1181 GYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 1306
            GYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYR+
Sbjct: 363  GYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRN 404


>ref|XP_535048.2| PREDICTED: similar to Acyl-CoA dehydrogenase, short/branched chain
            specific, mitochondrial precursor (SBCAD) (2-methyl
            branched chain acyl-CoA dehydrogenase) (2-MEBCAD)
            (2-methylbutyryl-coenzyme A dehydrogenase)
            (2-methylbutyryl-CoA dehydrogenase)... [Canis
            familiaris].
          Length = 521

 Score =  243 bits (621), Expect = 3e-64
 Identities = 129/364 (35%), Positives = 212/364 (58%)
 Frame = +2

Query: 188  MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 367
            M++ T + FA++ + P+ + +D+  +   + ++ + + GLM +++  +  G G  + +  
Sbjct: 152  MIKNTVKKFAQERVAPLVSTMDENSKMDPSIIEGLFQQGLMGIEIETKYGGTGASFFSSI 211

Query: 368  IAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 547
            + +EE+++  AS  ++  + N++    + K+G++EQK  ++T  T+ +KVG   LSE G 
Sbjct: 212  LVIEELAKVDASVALVCDIQNTVINNLMRKYGTEEQKATYLTKLTT-EKVGSICLSEAGA 270

Query: 548  GSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT 727
            GSD            + +V++G+K WI+NA  A   +V  + +  L  KG++ F+V   T
Sbjct: 271  GSDLFALKTRADKKGNYYVINGSKMWISNAEYAGLFLVMVNVNPDLGYKGLTCFVVDRDT 330

Query: 728  PGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQA 907
             GL +GK E K+GIRASST  L FE+ ++P+ N+LG+ G G+K A+  L+ GRIGIA+Q 
Sbjct: 331  EGLHIGKSEKKMGIRASSTCALTFENVKVPESNILGQIGHGYKHAIGILNEGRIGIAAQM 390

Query: 908  LGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK 1087
            LG+AQ   D  V Y + R  FG  +   QG+Q ++A +A  LE+ARLLT+  A L +  K
Sbjct: 391  LGLAQGCFDYTVPYMKERMQFGKRIFDFQGLQHQVAHVATQLEAARLLTYNTARLLETGK 450

Query: 1088 PFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQR 1267
            P IKE                   ++ +GG+GY  + P E+++RDA+I  IYEGTS IQ 
Sbjct: 451  PIIKEASMAKYYAAEVAGLTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGTSNIQL 510

Query: 1268 LVIA 1279
              IA
Sbjct: 511  NTIA 514


>ref|XP_547328.2| PREDICTED: similar to Acyl-CoA dehydrogenase, medium-chain specific,
            mitochondrial precursor (MCAD) [Canis familiaris].
          Length = 444

 Score =  233 bits (594), Expect = 4e-61
 Identities = 137/383 (35%), Positives = 209/383 (54%), Gaps = 4/383 (1%)
 Frame = +2

Query: 167  ELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAG 346
            E  E  +  + T R FA +E++P+AA+ DK   +P   +K+  ELGLM   +PE   G G
Sbjct: 63   EFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIKRAWELGLMNTHIPESCGGLG 122

Query: 347  LDYLAYTIAMEEISRGCASTGVIMSVN-NSLYLGPILKFGSKEQKQQWITPFTSGDKVGC 523
            L      +  EE++ GC  TGV  ++  NSL   P++  G+ +Q+++++   T    +  
Sbjct: 123  LGTFDACLITEELAYGC--TGVQTAIEANSLGQMPLIIAGNDQQQKKYLGRLTEEPLMCA 180

Query: 524  FALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTD---RSLQNK 694
            + ++EPG GSD            D ++++G K WITN  +A+   + A +D   ++   K
Sbjct: 181  YCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKTPAGK 240

Query: 695  GISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTL 874
              + F+V   TPG+ +G+KE  +G R S T  ++FED ++PKEN+L   G GFKIAM   
Sbjct: 241  AFTGFIVEADTPGVQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGEGAGFKIAMGAF 300

Query: 875  DMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLT 1054
            D  R  +A+ A+G+ Q ALD A  YA  R+ FG  L + QGI F LA+MA+ +E AR+  
Sbjct: 301  DKTRPPVAAGAVGLGQRALDEATKYALERKTFGKLLVEHQGISFLLAEMAMKVELARMSY 360

Query: 1055 WRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARIT 1234
             RAA   D  +                        +Q+ GG G+ TE P E+  RDA+I 
Sbjct: 361  QRAAWEVDTGRRNTYFASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAKIY 420

Query: 1235 EIYEGTSEIQRLVIAGHLLKSYR 1303
            +IYEGT++IQRL+IA   +  Y+
Sbjct: 421  QIYEGTAQIQRLIIAREHIGRYK 443


>ref|XP_535433.2| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
            precursor (IVD) isoform 1 [Canis familiaris].
          Length = 423

 Score =  231 bits (588), Expect = 2e-60
 Identities = 134/398 (33%), Positives = 208/398 (52%), Gaps = 8/398 (2%)
 Frame = +2

Query: 107  VRGALWPRDCRRLHTIFQSVE----LPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPE 274
            +R  L     RR H++    +    L    + LRQT   F ++ L P A ++D  + F  
Sbjct: 17   LRAPLGSLTSRRAHSLLPVDDAINGLSAEQKQLRQTMAKFLQEHLAPQAQEIDHFNEFKN 76

Query: 275  AQV--KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGP 448
             +   K++G LG++ +  P +  G+GL YL   + MEEISR  A+ G+    +++L L  
Sbjct: 77   LREFWKQLGNLGVLGITAPAQYGGSGLGYLEQVLVMEEISRVSAAVGLSYGAHSNLCLNQ 136

Query: 449  ILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWI 628
            I++ G++ QK++++    SG+ +G  A+SEP  GSD            D ++L+G K WI
Sbjct: 137  IVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDYYILNGNKFWI 196

Query: 629  TNAWEASAAVVFASTDRSL--QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFE 802
            TN  +A   +++A TD ++   ++GI+AF+V    PG +  KK DKLG+R S+T  LIFE
Sbjct: 197  TNGPDADILIIYAKTDLAVVPASRGITAFIVEKNMPGFSTSKKLDKLGMRGSNTCELIFE 256

Query: 803  DCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPL 982
            DC++P  N+LG    G  + M  LD+ R+ ++   LG+ QA LD  + Y   R AFG  +
Sbjct: 257  DCKVPAANILGHLSKGVYVLMSGLDLERLVLSGGPLGLMQAVLDHTIPYLHTREAFGQKI 316

Query: 983  TKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXM 1162
               Q +Q K+ADM   L + R   +  A   D      K+                   +
Sbjct: 317  GHFQLMQGKMADMYTRLMACRQYVYNVAKACDQGHCTAKDCAGVILYSAECATRVALDGI 376

Query: 1163 QILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVI 1276
            Q  G  GY+ + P  R  RDA++ EI  GTSE++RLVI
Sbjct: 377  QCFGANGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI 414


>ref|XP_857956.1| PREDICTED: similar to Isovaleryl-CoA dehydrogenase, mitochondrial
            precursor (IVD) isoform 2 [Canis familiaris].
          Length = 429

 Score =  224 bits (571), Expect = 2e-58
 Identities = 134/404 (33%), Positives = 208/404 (51%), Gaps = 14/404 (3%)
 Frame = +2

Query: 107  VRGALWPRDCRRLHTIFQSVE----LPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPE 274
            +R  L     RR H++    +    L    + LRQT   F ++ L P A ++D  + F  
Sbjct: 17   LRAPLGSLTSRRAHSLLPVDDAINGLSAEQKQLRQTMAKFLQEHLAPQAQEIDHFNEFKN 76

Query: 275  AQV--KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGP 448
             +   K++G LG++ +  P +  G+GL YL   + MEEISR  A+ G+    +++L L  
Sbjct: 77   LREFWKQLGNLGVLGITAPAQYGGSGLGYLEQVLVMEEISRVSAAVGLSYGAHSNLCLNQ 136

Query: 449  ILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDH------DSWVLS 610
            I++ G++ QK++++    SG+ +G  A+SEP  GSD                  D ++L+
Sbjct: 137  IVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKANFLSLGDYYILN 196

Query: 611  GTKAWITNAWEASAAVVFASTDRSL--QNKGISAFLVPMPTPGLTLGKKEDKLGIRASST 784
            G K WITN  +A   +++A TD ++   ++GI+AF+V    PG +  KK DKLG+R S+T
Sbjct: 197  GNKFWITNGPDADILIIYAKTDLAVVPASRGITAFIVEKNMPGFSTSKKLDKLGMRGSNT 256

Query: 785  ANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRR 964
              LIFEDC++P  N+LG    G  + M  LD+ R+ ++   LG+ QA LD  + Y   R 
Sbjct: 257  CELIFEDCKVPAANILGHLSKGVYVLMSGLDLERLVLSGGPLGLMQAVLDHTIPYLHTRE 316

Query: 965  AFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXX 1144
            AFG  +   Q +Q K+ADM   L + R   +  A   D      K+              
Sbjct: 317  AFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDQGHCTAKDCAGVILYSAECATR 376

Query: 1145 XXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVI 1276
                 +Q  G  GY+ + P  R  RDA++ EI  GTSE++RLVI
Sbjct: 377  VALDGIQCFGANGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI 420


>ref|XP_536524.2| PREDICTED: similar to Acyl-CoA dehydrogenase family member 8,
            mitochondrial precursor (ACAD-8) (Isobutyryl-CoA
            dehydrogenase) (Activator-recruited cofactor 42 kDa
            component) (ARC42) [Canis familiaris].
          Length = 473

 Score =  211 bits (536), Expect = 2e-54
 Identities = 128/387 (33%), Positives = 211/387 (54%), Gaps = 9/387 (2%)
 Frame = +2

Query: 161  SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSG 340
            SV L E  +  ++   DFA +E+ P  A+ D++  FP   ++K  +LG   + V  ++ G
Sbjct: 88   SVGLNEDQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDAMRKAAQLGFGGVYVRTDVGG 147

Query: 341  AGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVG 520
            +GL  L  ++  E ++ GC ST   +S++N + +  I  FG++EQ+ ++  P  + +K  
Sbjct: 148  SGLSRLDTSVIFEALATGCTSTTAYISIHN-MCVWMIDTFGNEEQRHRFCPPLCTMEKFA 206

Query: 521  CFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGI 700
             + L+EPG+GSD            D ++L+G+KA+I+   E+   VV   T      KGI
Sbjct: 207  SYCLTEPGSGSDAASLLTSAKRQGDHYILNGSKAFISGGGESDIYVVMCRTGGP-GPKGI 265

Query: 701  SAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDM 880
            S  +V   TPGL+ GKKE K+G  +  T  +IFEDC +P  N +G  G GF IAM+ L+ 
Sbjct: 266  SCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGNEGQGFIIAMKGLNG 325

Query: 881  GRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR 1060
            GRI +AS +LG A A++    +Y   R+ FG PL   Q +QFKLADMA  L ++RL+   
Sbjct: 326  GRINVASCSLGAAHASVVLTRDYLSVRKQFGEPLANNQYLQFKLADMATRLVASRLIIRN 385

Query: 1061 AAM-LKDNKKPFIK--------EXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERH 1213
            AA+ L++ ++  +                             +Q+ GG GY+ +   +++
Sbjct: 386  AAVALQEEREDAVALCSMAKLFATDECFAMRHYLWKKICNQALQMHGGYGYLKDYAVQQY 445

Query: 1214 YRDARITEIYEGTSEIQRLVIAGHLLK 1294
             RD+R+ +I EG++E+ R++I+  L +
Sbjct: 446  VRDSRVHQILEGSNEVMRMLISRSLFE 472


>ref|XP_533725.2| PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member 9
            isoform 1 [Canis familiaris].
          Length = 621

 Score =  191 bits (485), Expect = 2e-48
 Identities = 129/356 (36%), Positives = 187/356 (52%), Gaps = 11/356 (3%)
 Frame = +2

Query: 245  QVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSV 424
            ++D+E + P   ++K+  LGL  M VPEE  G GL    Y   + EI     S  V ++ 
Sbjct: 86   RIDREGKIPNETLEKLKNLGLFGMQVPEEYGGLGLSNTMYA-RLGEIIGLDGSIAVTLAA 144

Query: 425  NNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS-- 598
            + ++ L  I+  G+KEQK +++    SG+ +  F L+EP +GSD            D   
Sbjct: 145  HQAIGLKGIILAGNKEQKAKYLPRLASGEHIAAFCLTEPTSGSDAASIKTRATLSEDKKH 204

Query: 599  WVLSGTKAWITNAWEASAAVVFAST-----DRSLQNKGISAFLVPMPTPGLTLGKKEDKL 763
            ++L+G+K WITN   A+   VFA T     D S+++K I+A +V     G+T GK EDKL
Sbjct: 205  YILNGSKIWITNGGIANVFTVFAKTQVVDSDGSVKDK-ITALIVERDFGGVTNGKPEDKL 263

Query: 764  GIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAV 943
            GIR S+T  + FE+ ++P EN+LGE G GFK+AM  L+ GR  + S   G+ +  ++   
Sbjct: 264  GIRGSNTCEVHFENTKVPIENVLGEVGGGFKVAMNILNSGRFSMGSLVAGMLKKLIEMTA 323

Query: 944  NYAENRRAFGVPLTKLQGIQFKLADMA---LALESARLLTWRAAMLKDNKKPFIK-EXXX 1111
             YA  R+ F   L++   IQ K A MA     +ES   LT  A ML     P    E   
Sbjct: 324  AYACTRKQFNKNLSEFGLIQEKFALMAQKTYVMESMAYLT--AGMLDQPGFPDCSIEAAM 381

Query: 1112 XXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                            +Q+LGG GY+ + P ER  RD+RI  I+EGT+EI R+ IA
Sbjct: 382  VKVFSSEGAWQCVSEALQVLGGSGYMRDYPYERLLRDSRILLIFEGTNEILRMYIA 437


>ref|XP_536053.2| PREDICTED: similar to acyl-Coenzyme A dehydrogenase, long chain
            precursor [Canis familiaris].
          Length = 441

 Score =  184 bits (467), Expect = 2e-46
 Identities = 114/369 (30%), Positives = 180/369 (48%), Gaps = 3/369 (0%)
 Frame = +2

Query: 182  YQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLA 361
            + + R++ R F ++E+VP  A+ +K         +K G++GL+ +++ E   G G D  +
Sbjct: 68   HDIFRESVRKFFQEEVVPYHAEWEKAGEVSRELWEKAGKVGLLGVNIAEHHGGIGGDLYS 127

Query: 362  YTIAMEEIS-RGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSE 538
              I  EE +   C+  G   S+++ + +  I K+GS+EQ + +I    SG  +G  A++E
Sbjct: 128  TAIIWEEQAYSNCSGPG--FSLHSDIVMPYITKYGSEEQIKHFIPQMVSGKCIGAIAMTE 185

Query: 539  PGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQN--KGISAFL 712
            PG GSD          D   W+L+G+K +I+N W     +V A T+R   +   GIS FL
Sbjct: 186  PGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGWLCDVVIVVAVTNREAHSLAHGISLFL 245

Query: 713  VPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIG 892
            V     G   GKK  K+G++A  T+ L FED R+P   LLGE   GF   MQ L   R+ 
Sbjct: 246  VENGMKGFIKGKKLQKMGLKAQDTSELFFEDVRLPASALLGEENRGFYYLMQELPQERLL 305

Query: 893  IASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAML 1072
            IA   +  ++   +   NY + R  FG  +  +Q +Q KLA++   +   R        L
Sbjct: 306  IAELGISGSEFMFEETRNYVKERNVFGKKVAHIQTVQHKLAELKTQICVTRAFVDSCLQL 365

Query: 1073 KDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGT 1252
             + K+                        +Q+ GG GY+ + P  + Y DAR   IY GT
Sbjct: 366  HEKKRLDSTTASMAKYWTSELQNRIAYDCVQLHGGWGYMWDYPVAKAYVDARAQPIYGGT 425

Query: 1253 SEIQRLVIA 1279
            +EI + +IA
Sbjct: 426  NEIMKELIA 434


>ref|XP_857243.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
            specific, mitochondrial precursor (VLCAD) isoform 7
            [Canis familiaris].
          Length = 522

 Score =  184 bits (466), Expect = 3e-46
 Identities = 119/354 (33%), Positives = 176/354 (49%), Gaps = 8/354 (2%)
 Frame = +2

Query: 242  AQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMS 421
            A+ D   +  E  ++ + ELG   + VP EL G GL    Y   +E +       G+ + 
Sbjct: 115  AKNDTLEKVEETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLG 174

Query: 422  VNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS- 598
             + S+    IL FG+K QK++++    SG+ +  F L+EP +GSD               
Sbjct: 175  AHQSIGFKGILLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAASIRSSAVPSPCGK 234

Query: 599  -WVLSGTKAWITNAWEASAAVVFASTDRSLQNKG-----ISAFLVPMPTPGLTLGKKEDK 760
             + L+G+K WI+N   A    VFA T  +    G     I+AF+V     G+T G  E K
Sbjct: 235  YYTLNGSKIWISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKK 294

Query: 761  LGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCA 940
            +GI+AS+TA + F+  R+P EN+LGE G GFK+AM  L+ GR G+A+   G  +  +  A
Sbjct: 295  MGIKASNTAEVYFDSVRVPAENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKA 354

Query: 941  VNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR-AAMLKDNKKPFIKEXXXXX 1117
            V++A NR  FG  +     IQ KLA MA+       + +  +A +      F  E     
Sbjct: 355  VDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQGSTDFQIEAAISK 414

Query: 1118 XXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                          +QILGGMG++ E   ER  RD RI  I+EGT++I RL +A
Sbjct: 415  IFGSEAAWKVTDECIQILGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 468


>ref|XP_857195.1| PREDICTED: similar to Acyl-CoA dehydrogenase, very-long-chain
            specific, mitochondrial precursor (VLCAD) isoform 6
            [Canis familiaris].
          Length = 487

 Score =  184 bits (466), Expect = 3e-46
 Identities = 119/354 (33%), Positives = 176/354 (49%), Gaps = 8/354 (2%)
 Frame = +2

Query: 242  AQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMS 421
            A+ D   +  E  ++ + ELG   + VP EL G GL    Y   +E +       G+ + 
Sbjct: 115  AKNDTLEKVEETTLQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGTHDLGVGITLG 174

Query: 422  VNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS- 598
             + S+    IL FG+K QK++++    SG+ +  F L+EP +GSD               
Sbjct: 175  AHQSIGFKGILLFGTKAQKEKYLPKLASGESIAAFCLTEPSSGSDAASIRSSAVPSPCGK 234

Query: 599  -WVLSGTKAWITNAWEASAAVVFASTDRSLQNKG-----ISAFLVPMPTPGLTLGKKEDK 760
             + L+G+K WI+N   A    VFA T  +    G     I+AF+V     G+T G  E K
Sbjct: 235  YYTLNGSKIWISNGGLADVFTVFAKTPVTDAATGAVKEKITAFVVERSFGGVTHGPPEKK 294

Query: 761  LGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCA 940
            +GI+AS+TA + F+  R+P EN+LGE G GFK+AM  L+ GR G+A+   G  +  +  A
Sbjct: 295  MGIKASNTAEVYFDSVRVPAENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKA 354

Query: 941  VNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR-AAMLKDNKKPFIKEXXXXX 1117
            V++A NR  FG  +     IQ KLA MA+       + +  +A +      F  E     
Sbjct: 355  VDHAANRTQFGEKIHNFGLIQEKLARMAMLQYVTESMAYMVSANMDQGSTDFQIEAAISK 414

Query: 1118 XXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                          +QILGGMG++ E   ER  RD RI  I+EGT++I RL +A
Sbjct: 415  IFGSEAAWKVTDECIQILGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 468


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 63,821,196
Number of extensions: 1908950
Number of successful extensions: 8407
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 8307
Number of HSP's successfully gapped: 23
Length of query: 498
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 391
Effective length of database: 15,307,552
Effective search space: 5985252832
Effective search space used: 5985252832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007409
         (1494 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mi...   682   0.0  
Alignment   gi|NP_001600.1| short/branched chain specific acyl-CoA dehydrog...   265   6e-71
Alignment   gi|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase...   241   1e-63
Alignment   gi|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, m...   241   1e-63
Alignment   gi|NP_002216.2| isovaleryl-CoA dehydrogenase, mitochondrial iso...   235   9e-62
Alignment   gi|NP_001152980.1| isovaleryl-CoA dehydrogenase, mitochondrial ...   217   2e-56
Alignment   gi|NP_055199.1| isobutyryl-CoA dehydrogenase, mitochondrial pre...   217   3e-56
Alignment   gi|NP_054768.2| acyl-CoA dehydrogenase family member 9, mitocho...   196   5e-50
Alignment   gi|NP_001599.1| long-chain specific acyl-CoA dehydrogenase, mit...   181   2e-45
Alignment   gi|NP_000009.1| very long-chain specific acyl-CoA dehydrogenase...   178   1e-44

>ref|NP_000008.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Homo sapiens].
          Length = 412

 Score =  682 bits (1761), Expect = 0.0
 Identities = 349/412 (84%), Positives = 363/412 (88%)
 Frame = +2

Query: 71   MAAALLARACGPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQV 250
            MAAALLARA GP R AL PR  R+LHTI+QSVELPET+QML QTCRDFAEKEL PIAAQV
Sbjct: 1    MAAALLARASGPARRALCPRAWRQLHTIYQSVELPETHQMLLQTCRDFAEKELFPIAAQV 60

Query: 251  DKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNN 430
            DKEH FP AQVKKMG LGL+AMDVPEEL GAGLDYLAY IAMEEISRGCASTGVIMSVNN
Sbjct: 61   DKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVNN 120

Query: 431  SLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLS 610
            SLYLGPILKFGSKEQKQ W+TPFTSGDK+GCFALSEPGNGSD          + DSWVL+
Sbjct: 121  SLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLN 180

Query: 611  GTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN 790
            GTKAWITNAWEASAAVVFASTDR+LQNKGISAFLVPMPTPGLTLGKKEDKLGIR SSTAN
Sbjct: 181  GTKAWITNAWEASAAVVFASTDRALQNKGISAFLVPMPTPGLTLGKKEDKLGIRGSSTAN 240

Query: 791  LIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAF 970
            LIFEDCRIPK+++LGEPGMGFKIAMQTLDMGRIGIASQALGIAQ ALDCAVNYAENR AF
Sbjct: 241  LIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALGIAQTALDCAVNYAENRMAF 300

Query: 971  GVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXX 1150
            G PLTKLQ IQFKLADMALALESARLLTWRAAMLKDNKKPFIKE                
Sbjct: 301  GAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAIS 360

Query: 1151 XXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 1306
               +QILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLL+SYRS
Sbjct: 361  HQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 412


>ref|NP_001600.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
            precursor [Homo sapiens].
          Length = 432

 Score =  265 bits (678), Expect = 6e-71
 Identities = 142/371 (38%), Positives = 224/371 (60%)
 Frame = +2

Query: 188  MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 367
            M++ + + FA++++ P+ + +D+  +  ++ ++ + + GLM ++V  E  G G  +L+  
Sbjct: 63   MIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTV 122

Query: 368  IAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 547
            + +EE+++  AS  V   + N+L    I K G++EQK  ++   T+ +KVG F LSE G 
Sbjct: 123  LVIEELAKVDASVAVFCEIQNTLINTLIRKHGTEEQKATYLPQLTT-EKVGSFCLSEAGA 181

Query: 548  GSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT 727
            GSD          + D +VL+G+K WI++A  A   +V A+ D ++  KGI++FLV   T
Sbjct: 182  GSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDT 241

Query: 728  PGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQA 907
            PGL +GK E+KLG+RASST  L FE+ ++P+ N+LG+ G G+K A+ +L+ GRIGIA+Q 
Sbjct: 242  PGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQM 301

Query: 908  LGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK 1087
            LG+AQ   D  + Y + R  FG  L   QG+Q ++A +A  LE+ARLLT+ AA L +  K
Sbjct: 302  LGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGK 361

Query: 1088 PFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQR 1267
            PFIKE                   ++ +GG+GY  + P E+++RDA+I  IYEG S IQ 
Sbjct: 362  PFIKEASMAKYYASEIAGQTTSKCIEWMGGVGYTKDYPVEKYFRDAKIGTIYEGASNIQL 421

Query: 1268 LVIAGHLLKSY 1300
              IA H+   Y
Sbjct: 422  NTIAKHIDAEY 432


>ref|NP_001120800.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform b
            precursor [Homo sapiens].
          Length = 425

 Score =  241 bits (616), Expect = 1e-63
 Identities = 141/386 (36%), Positives = 214/386 (55%), Gaps = 4/386 (1%)
 Frame = +2

Query: 161  SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSG 340
            S E  E  +  + T R FA +E++P+AA+ DK   +P   +++  ELGLM   +PE   G
Sbjct: 42   SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGG 101

Query: 341  AGLDYLAYTIAMEEISRGCASTGVIMSVN-NSLYLGPILKFGSKEQKQQWITPFTSGDKV 517
             GL      +  EE++ GC  TGV  ++  NSL   PI+  G+ +QK++++   T    +
Sbjct: 102  LGLGTFDACLISEELAYGC--TGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 159

Query: 518  GCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTD---RSLQ 688
              + ++EPG GSD            D ++++G K WITN  +A+   + A +D   ++  
Sbjct: 160  CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 219

Query: 689  NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQ 868
            NK  + F+V   TPG+ +G+KE  +G R S T  ++FED ++PKEN+L   G GFK+AM 
Sbjct: 220  NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 279

Query: 869  TLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARL 1048
              D  R  +A+ A+G+AQ ALD A  YA  R+ FG  L + Q I F LA+MA+ +E AR+
Sbjct: 280  AFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARM 339

Query: 1049 LTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDAR 1228
               RAA   D+ +                        +QILGG G+ TE P E+  RDA+
Sbjct: 340  SYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAK 399

Query: 1229 ITEIYEGTSEIQRLVIAGHLLKSYRS 1306
            I +IYEGTS+IQRL++A   +  Y++
Sbjct: 400  IYQIYEGTSQIQRLIVAREHIDKYKN 425


>ref|NP_000007.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform a
            precursor [Homo sapiens].
          Length = 421

 Score =  241 bits (616), Expect = 1e-63
 Identities = 141/386 (36%), Positives = 214/386 (55%), Gaps = 4/386 (1%)
 Frame = +2

Query: 161  SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSG 340
            S E  E  +  + T R FA +E++P+AA+ DK   +P   +++  ELGLM   +PE   G
Sbjct: 38   SFEFTEQQKEFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGG 97

Query: 341  AGLDYLAYTIAMEEISRGCASTGVIMSVN-NSLYLGPILKFGSKEQKQQWITPFTSGDKV 517
             GL      +  EE++ GC  TGV  ++  NSL   PI+  G+ +QK++++   T    +
Sbjct: 98   LGLGTFDACLISEELAYGC--TGVQTAIEGNSLGQMPIIIAGNDQQKKKYLGRMTEEPLM 155

Query: 518  GCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTD---RSLQ 688
              + ++EPG GSD            D ++++G K WITN  +A+   + A +D   ++  
Sbjct: 156  CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 215

Query: 689  NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQ 868
            NK  + F+V   TPG+ +G+KE  +G R S T  ++FED ++PKEN+L   G GFK+AM 
Sbjct: 216  NKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMG 275

Query: 869  TLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARL 1048
              D  R  +A+ A+G+AQ ALD A  YA  R+ FG  L + Q I F LA+MA+ +E AR+
Sbjct: 276  AFDKTRPVVAAGAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARM 335

Query: 1049 LTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDAR 1228
               RAA   D+ +                        +QILGG G+ TE P E+  RDA+
Sbjct: 336  SYQRAAWEVDSGRRNTYYASIAKAFAGDIANQLATDAVQILGGNGFNTEYPVEKLMRDAK 395

Query: 1229 ITEIYEGTSEIQRLVIAGHLLKSYRS 1306
            I +IYEGTS+IQRL++A   +  Y++
Sbjct: 396  IYQIYEGTSQIQRLIVAREHIDKYKN 421


>ref|NP_002216.2| isovaleryl-CoA dehydrogenase, mitochondrial isoform 1 precursor [Homo
            sapiens].
          Length = 426

 Score =  235 bits (599), Expect = 9e-62
 Identities = 130/373 (34%), Positives = 201/373 (53%), Gaps = 4/373 (1%)
 Frame = +2

Query: 170  LPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGELGLMAMDVPEELSGA 343
            L E  + LRQT   F ++ L P A ++D+ + F   +   K++G LG++ +  P +  G+
Sbjct: 45   LSEEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 104

Query: 344  GLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGC 523
            GL YL + + MEEISR   + G+    +++L +  +++ G++ QK++++    SG+ +G 
Sbjct: 105  GLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGA 164

Query: 524  FALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSL--QNKG 697
             A+SEP  GSD            + ++L+G K WITN  +A   +V+A TD +    ++G
Sbjct: 165  LAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRG 224

Query: 698  ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLD 877
            I+AF+V    PG +  KK DKLG+R S+T  LIFEDC+IP  N+LG    G  + M  LD
Sbjct: 225  ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLD 284

Query: 878  MGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTW 1057
            + R+ +A   LG+ QA LD  + Y   R AFG  +   Q +Q K+ADM   L + R   +
Sbjct: 285  LERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVY 344

Query: 1058 RAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITE 1237
              A   D      K+                   +Q  GG GY+ + P  R  RDA++ E
Sbjct: 345  NVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGYINDFPMGRFLRDAKLYE 404

Query: 1238 IYEGTSEIQRLVI 1276
            I  GTSE++RLVI
Sbjct: 405  IGAGTSEVRRLVI 417


>ref|NP_001152980.1| isovaleryl-CoA dehydrogenase, mitochondrial isoform 2 precursor [Homo
            sapiens].
          Length = 396

 Score =  217 bits (553), Expect = 2e-56
 Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 2/333 (0%)
 Frame = +2

Query: 284  KKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFG 463
            K++G LG++ +  P +  G+GL YL + + MEEISR   + G+    +++L +  +++ G
Sbjct: 55   KQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNG 114

Query: 464  SKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWE 643
            ++ QK++++    SG+ +G  A+SEP  GSD            + ++L+G K WITN  +
Sbjct: 115  NEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPD 174

Query: 644  ASAAVVFASTDRSL--QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIP 817
            A   +V+A TD +    ++GI+AF+V    PG +  KK DKLG+R S+T  LIFEDC+IP
Sbjct: 175  ADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIP 234

Query: 818  KENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQG 997
              N+LG    G  + M  LD+ R+ +A   LG+ QA LD  + Y   R AFG  +   Q 
Sbjct: 235  AANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQL 294

Query: 998  IQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGG 1177
            +Q K+ADM   L + R   +  A   D      K+                   +Q  GG
Sbjct: 295  MQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGG 354

Query: 1178 MGYVTEMPAERHYRDARITEIYEGTSEIQRLVI 1276
             GY+ + P  R  RDA++ EI  GTSE++RLVI
Sbjct: 355  NGYINDFPMGRFLRDAKLYEIGAGTSEVRRLVI 387


>ref|NP_055199.1| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Homo sapiens].
          Length = 415

 Score =  217 bits (552), Expect = 3e-56
 Identities = 128/379 (33%), Positives = 211/379 (55%), Gaps = 1/379 (0%)
 Frame = +2

Query: 161  SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSG 340
            S+ L E  +  ++   DFA +E+ P  A+ D++  FP   ++K  +LG   + +  ++ G
Sbjct: 38   SMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGG 97

Query: 341  AGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVG 520
            +GL  L  ++  E ++ GC ST   +S++N +    I  FG++EQ+ ++  P  + +K  
Sbjct: 98   SGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFA 156

Query: 521  CFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGI 700
             + L+EPG+GSD            D ++L+G+KA+I+ A E+   VV   T      KGI
Sbjct: 157  SYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGP-GPKGI 215

Query: 701  SAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDM 880
            S  +V   TPGL+ GKKE K+G  +  T  +IFEDC +P  N +G  G GF IA++ L+ 
Sbjct: 216  SCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNG 275

Query: 881  GRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR 1060
            GRI IAS +LG A A++    ++   R+ FG PL   Q +QF LADMA  L +ARL+   
Sbjct: 276  GRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRN 335

Query: 1061 AAM-LKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITE 1237
            AA+ L++ +K  +                     +Q+ GG GY+ +   +++ RD+R+ +
Sbjct: 336  AAVALQEERKDAVALCSMAKLFATDECFAICNQALQMHGGYGYLKDYAVQQYVRDSRVHQ 395

Query: 1238 IYEGTSEIQRLVIAGHLLK 1294
            I EG++E+ R++I+  LL+
Sbjct: 396  ILEGSNEVMRILISRSLLQ 414


>ref|NP_054768.2| acyl-CoA dehydrogenase family member 9, mitochondrial precursor [Homo
            sapiens].
          Length = 621

 Score =  196 bits (498), Expect = 5e-50
 Identities = 136/382 (35%), Positives = 199/382 (52%), Gaps = 11/382 (2%)
 Frame = +2

Query: 167  ELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAG 346
            EL E  Q L    + F E+     + ++D+E + P+  ++K+  LGL  + VPEE  G G
Sbjct: 63   ELNEINQFLGPVEKFFTEEV---DSRKIDQEGKIPDETLEKLKSLGLFGLQVPEEYGGLG 119

Query: 347  LDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCF 526
                 Y+   E IS   + T V ++ + ++ L  I+  G++EQK +++    SG+ +  F
Sbjct: 120  FSNTMYSRLGEIISMDGSIT-VTLAAHQAIGLKGIILAGTEEQKAKYLPKLASGEHIAAF 178

Query: 527  ALSEPGNGSDXXXXXXXXXXDHDS--WVLSGTKAWITNAWEASAAVVFAST-----DRSL 685
             L+EP +GSD            D   ++L+G+K WITN   A+   VFA T     D S+
Sbjct: 179  CLTEPASGSDAASIRSRATLSEDKKHYILNGSKVWITNGGLANIFTVFAKTEVVDSDGSV 238

Query: 686  QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAM 865
            ++K I+AF+V     G+T GK EDKLGIR S+T  + FE+ +IP EN+LGE G GFK+AM
Sbjct: 239  KDK-ITAFIVERDFGGVTNGKPEDKLGIRGSNTCEVHFENTKIPVENILGEVGDGFKVAM 297

Query: 866  QTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFK---LADMALALE 1036
              L+ GR  + S   G+ +  ++    YA  R+ F   L++   IQ K   +A  A  +E
Sbjct: 298  NILNSGRFSMGSVVAGLLKRLIEMTAEYACTRKQFNKRLSEFGLIQEKFALMAQKAYVME 357

Query: 1037 SARLLTWRAAMLKDNKKPFIK-EXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERH 1213
            S   LT  A ML     P    E                   +QILGG+GY  + P ER 
Sbjct: 358  SMTYLT--AGMLDQPGFPDCSIEAAMVKVFSSEAAWQCVSEALQILGGLGYTRDYPYERI 415

Query: 1214 YRDARITEIYEGTSEIQRLVIA 1279
             RD RI  I+EGT+EI R+ IA
Sbjct: 416  LRDTRILLIFEGTNEILRMYIA 437


>ref|NP_001599.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Homo sapiens].
          Length = 430

 Score =  181 bits (458), Expect = 2e-45
 Identities = 113/373 (30%), Positives = 184/373 (49%), Gaps = 3/373 (0%)
 Frame = +2

Query: 182  YQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLA 361
            + + R++ R F ++E++P  ++ +K         +K G+ GL+ +++ E L G G D  +
Sbjct: 57   HDIFRKSVRKFFQEEVIPHHSEWEKAGEVSREVWEKAGKQGLLGVNIAEHLGGIGGDLYS 116

Query: 362  YTIAMEEIS-RGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSE 538
              I  EE +   C+  G   S+++ + +  I   GS+EQ + +I   T+G  +G  A++E
Sbjct: 117  AAIVWEEQAYSNCSGPG--FSIHSGIVMSYITNHGSEEQIKHFIPQMTAGKCIGAIAMTE 174

Query: 539  PGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNK--GISAFL 712
            PG GSD          D   W+L+G+K +I+N   +   +V A T+    +   GIS FL
Sbjct: 175  PGAGSDLQGIKTNAKKDGSDWILNGSKVFISNGSLSDVVIVVAVTNHEAPSPAHGISLFL 234

Query: 713  VPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIG 892
            V     G   G+K  K+G++A  TA L FED R+P   LLGE   GF   M+ L   R+ 
Sbjct: 235  VENGMKGFIKGRKLHKMGLKAQDTAELFFEDIRLPASALLGEENKGFYYIMKELPQERLL 294

Query: 893  IASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAML 1072
            IA  A+  ++   +   NY + R+AFG  +  LQ +Q KLA++   +   R        L
Sbjct: 295  IADVAISASEFMFEETRNYVKQRKAFGKTVAHLQTVQHKLAELKTHICVTRAFVDNCLQL 354

Query: 1073 KDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGT 1252
             + K+                        +Q+ GG GY+ E P  + Y DAR+  IY GT
Sbjct: 355  HEAKRLDSATACMAKYWASELQNSVAYDCVQLHGGWGYMWEYPIAKAYVDARVQPIYGGT 414

Query: 1253 SEIQRLVIAGHLL 1291
            +EI + +IA  ++
Sbjct: 415  NEIMKELIAREIV 427


>ref|NP_000009.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            isoform 1 precursor [Homo sapiens].
          Length = 655

 Score =  178 bits (452), Expect = 1e-44
 Identities = 118/354 (33%), Positives = 173/354 (48%), Gaps = 8/354 (2%)
 Frame = +2

Query: 242  AQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMS 421
            A+ D      E   + + ELG   + VP EL G GL    Y   +E +       G+ + 
Sbjct: 120  AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLG 179

Query: 422  VNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS- 598
             + S+    IL FG+K QK++++    SG+ V  F L+EP +GSD               
Sbjct: 180  AHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGK 239

Query: 599  -WVLSGTKAWITNAWEASAAVVFASTDRSLQNKG-----ISAFLVPMPTPGLTLGKKEDK 760
             + L+G+K WI+N   A    VFA T  +    G     I+AF+V     G+T G  E K
Sbjct: 240  YYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKK 299

Query: 761  LGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCA 940
            +GI+AS+TA + F+  R+P EN+LGE G GFK+AM  L+ GR G+A+   G  +  +  A
Sbjct: 300  MGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKA 359

Query: 941  VNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR-AAMLKDNKKPFIKEXXXXX 1117
            V++A NR  FG  +     IQ KLA M +       + +  +A +      F  E     
Sbjct: 360  VDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISK 419

Query: 1118 XXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                          +QI+GGMG++ E   ER  RD RI  I+EGT++I RL +A
Sbjct: 420  IFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 473


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,449,538
Number of extensions: 1857288
Number of successful extensions: 7844
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 7758
Number of HSP's successfully gapped: 20
Length of query: 498
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 391
Effective length of database: 14,770,016
Effective search space: 5775076256
Effective search space used: 5775076256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007409
         (1494 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mi...   681   0.0  
Alignment   gi|NP_080102.1| short/branched chain specific acyl-CoA dehydrog...   247   2e-65
Alignment   gi|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, m...   238   1e-62
Alignment   gi|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial pre...   235   6e-62
Alignment   gi|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial pre...   219   6e-57
Alignment   gi|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitocho...   193   3e-49
Alignment   gi|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mit...   188   1e-47
Alignment   gi|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase...   169   7e-42
Alignment   gi|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial pr...   156   5e-38
Alignment   gi|NP_032123.2| glutaryl-CoA dehydrogenase, mitochondrial precu...   156   5e-38

>ref|NP_031409.2| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Mus musculus].
          Length = 412

 Score =  681 bits (1758), Expect = 0.0
 Identities = 347/412 (84%), Positives = 366/412 (88%)
 Frame = +2

Query: 71   MAAALLARACGPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQV 250
            MAAALLARA GP+R AL  RD RRLHT++QSVELPET+QMLRQTCRDFAEKELVPIAAQ+
Sbjct: 1    MAAALLARARGPLRRALGVRDWRRLHTVYQSVELPETHQMLRQTCRDFAEKELVPIAAQL 60

Query: 251  DKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNN 430
            D+EH FP AQVKKMGELGL+AMDVPEELSGAGLDYLAY+IA+EEISR CASTGVIMSVNN
Sbjct: 61   DREHLFPTAQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRACASTGVIMSVNN 120

Query: 431  SLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLS 610
            SLYLGPILKFGS +QKQQWITPFT+GDK+GCFALSEPGNGSD          + DSWVL+
Sbjct: 121  SLYLGPILKFGSAQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLN 180

Query: 611  GTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN 790
            GTKAWITN+WEASA VVFASTDRS QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN
Sbjct: 181  GTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN 240

Query: 791  LIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAF 970
            LIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQA+LDCAV YAENR AF
Sbjct: 241  LIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRNAF 300

Query: 971  GVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXX 1150
            G PLTKLQ IQFKLADMALALESARLLTWRAAMLKDNKKPF KE                
Sbjct: 301  GAPLTKLQNIQFKLADMALALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAIS 360

Query: 1151 XXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 1306
               +QILGGMGYVTEMPAER+YRDARITEIYEGTSEIQRLVIAGHLL+SYRS
Sbjct: 361  HQAIQILGGMGYVTEMPAERYYRDARITEIYEGTSEIQRLVIAGHLLRSYRS 412


>ref|NP_080102.1| short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
            [Mus musculus].
          Length = 432

 Score =  247 bits (631), Expect = 2e-65
 Identities = 131/371 (35%), Positives = 214/371 (57%)
 Frame = +2

Query: 188  MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 367
            M++QT + FA++ + P+ + +D+  +  ++ ++ + + GLM ++V  +  G    +    
Sbjct: 63   MMKQTVKKFAQEHVAPLVSSMDENSKMEKSVIQGLFQQGLMGIEVEAQYGGTEASFFCSV 122

Query: 368  IAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 547
            + +EE+++  AS  ++  + N++      K  S+EQK  ++    + +K+G F LSE G 
Sbjct: 123  LVIEELAKVDASVALLCDIQNTIINNLFRKHASEEQKATYLPKLVT-EKLGSFCLSEAGA 181

Query: 548  GSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT 727
            GSD            + +VL+G+K WI++A  A   +VFA+ D S   +GI+ FLV   T
Sbjct: 182  GSDSFAMKTRADKSGNYYVLNGSKMWISHAEHAELFLVFANVDPSSGYRGITCFLVDRDT 241

Query: 728  PGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQA 907
             G  +GK+E+K+GIRASST  L FE+ ++P+ N+LG+ G G+K A+ +L+ GRIGIA+Q 
Sbjct: 242  EGFQIGKRENKMGIRASSTCQLTFENVKVPETNILGKIGHGYKYAIGSLNEGRIGIAAQM 301

Query: 908  LGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK 1087
            LG+AQ   D  + Y + R  FG  +   QG+Q ++A +A  LE+ RLLT+ AA L +  +
Sbjct: 302  LGLAQGCFDYTIPYIKERMQFGKRIFDFQGLQHQVAQVATQLEATRLLTYNAARLVEAGR 361

Query: 1088 PFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQR 1267
            PFIKE                   ++ +GG+GY  + P E+ +RDA+I  IYEG S IQ 
Sbjct: 362  PFIKEASMAKYYASEVAGLTTSKCIEWMGGVGYTKDYPVEKFFRDAKIGTIYEGASNIQL 421

Query: 1268 LVIAGHLLKSY 1300
              IA H+   Y
Sbjct: 422  NTIAKHIDAEY 432


>ref|NP_031408.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Mus musculus].
          Length = 421

 Score =  238 bits (606), Expect = 1e-62
 Identities = 149/423 (35%), Positives = 227/423 (53%), Gaps = 13/423 (3%)
 Frame = +2

Query: 77   AALLARACGPVRGALWPRDCRRLHT---------IFQSVELPETYQMLRQTCRDFAEKEL 229
            AA   R C  +R ++   +CR  H+         +  S EL E  +  + T R FA +E+
Sbjct: 2    AAAFRRGCRVLR-SVSHFECRTQHSKAAHKQEPGLGFSFELTEQQKEFQATARKFAREEI 60

Query: 230  VPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTG 409
            +P+A + DK   +P   +K+  ELGL+   +PE   G GL      +  EE++ GC  TG
Sbjct: 61   IPVAPEYDKSGEYPFPLIKRAWELGLINAHIPESCGGLGLGTFDACLITEELAYGC--TG 118

Query: 410  VIMSVN-NSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXX 586
            V  ++  NSL   P++  G+ +QK++++   T    +  + ++EP  GSD          
Sbjct: 119  VQTAIEANSLGQMPVILAGNDQQKKKYLGRMTEQPMMCAYCVTEPSAGSDVAAIKTKAEK 178

Query: 587  DHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQ---NKGISAFLVPMPTPGLTLGKKED 757
              D +V++G K WITN  +A+   + A ++   +   +K  + F+V   TPG+ +GKKE 
Sbjct: 179  KGDEYVINGQKMWITNGGKANWYFLLARSNPDPKVPASKAFTGFIVEADTPGIHIGKKEL 238

Query: 758  KLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDC 937
             +G R S T  + FED R+PKEN+L   G GFKIAM   D  R  +A+ A+G+AQ ALD 
Sbjct: 239  NMGQRCSDTRGIAFEDVRVPKENVLIGEGAGFKIAMGAFDRTRPTVAAGAVGLAQRALDE 298

Query: 938  AVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXX 1117
            A  YA +R+ FG  L + QG+ F LA+MA+ +E ARL   RAA   D+ +          
Sbjct: 299  ATKYALDRKTFGKLLVEHQGVSFLLAEMAMKVELARLSYQRAAWEVDSGRRNTYYASIAK 358

Query: 1118 XXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKS 1297
                          +QI GG G+ TE P E+  RDA+I +IYEGT++IQRL+IA   ++ 
Sbjct: 359  AFAGDIANQLATDAVQIFGGYGFNTEYPVEKLMRDAKIYQIYEGTAQIQRLIIAREHIEK 418

Query: 1298 YRS 1306
            Y++
Sbjct: 419  YKN 421


>ref|NP_062800.1| isovaleryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 424

 Score =  235 bits (600), Expect = 6e-62
 Identities = 136/388 (35%), Positives = 209/388 (53%), Gaps = 8/388 (2%)
 Frame = +2

Query: 137  RRLHTIFQSVE----LPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGE 298
            RR H+I    +    L E  + LR T   F ++ L P A ++D+ + F   +   K++G 
Sbjct: 28   RRAHSILPVDDDINGLNEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGS 87

Query: 299  LGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQK 478
            LG++ +  P +  G+GL YL + + MEEISR   + G+    +++L +  I++ G++ QK
Sbjct: 88   LGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQK 147

Query: 479  QQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAV 658
            ++++    SG+ +G  A+SEP  GSD            D +VL+G K WITN  +A   V
Sbjct: 148  EKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILV 207

Query: 659  VFASTDRSL--QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLL 832
            V+A TD +    ++GI+AF+V    PG +  KK DKLG+R S+T  L+FEDC++P  N+L
Sbjct: 208  VYAKTDLTAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELVFEDCKVPAANVL 267

Query: 833  GEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKL 1012
             +   G  + M  LD+ R+ +A   LGI QA LD  + Y   R AFG  + + Q +Q K+
Sbjct: 268  SQESKGVYVLMSGLDLERLVLAGGPLGIMQAVLDHTIPYLHVREAFGQKIGQFQLMQGKM 327

Query: 1013 ADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVT 1192
            ADM   L ++R   +  A   D      K+                   +Q LGG GY+ 
Sbjct: 328  ADMYTRLMASRQYVYNVAKACDEGHIIPKDCAGVILYAAECATQVALDGIQCLGGNGYIN 387

Query: 1193 EMPAERHYRDARITEIYEGTSEIQRLVI 1276
            + P  R  RDA++ EI  GTSE++RLVI
Sbjct: 388  DFPMGRFLRDAKLYEIGAGTSEVRRLVI 415


>ref|NP_080138.2| isobutyryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 413

 Score =  219 bits (557), Expect = 6e-57
 Identities = 127/379 (33%), Positives = 214/379 (56%), Gaps = 1/379 (0%)
 Frame = +2

Query: 161  SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSG 340
            S+ L E  +  ++   DFA +E+ P  A+ D++  FP   ++K  +LG   + V  ++ G
Sbjct: 36   SLGLNEEQKGFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYVRTDVGG 95

Query: 341  AGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVG 520
            +GL  L  ++  E ++ GC ST   +S++N +    I  FG++EQ+ ++  P  + +K  
Sbjct: 96   SGLSRLDTSVIFEALATGCTSTTAYISIHN-MCAWMIDSFGNEEQRHKFCPPLCTMEKFA 154

Query: 521  CFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGI 700
             + L+EPG+GSD            D ++L+G+KA+I+   E+   VV   T  S   KGI
Sbjct: 155  SYCLTEPGSGSDAASLLTSAKQQGDHYILNGSKAFISGGGESDIYVVMCRTGES-GAKGI 213

Query: 701  SAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDM 880
            S  +V   TPGL+ GKKE K+G  +  T  +IFEDC +P  N +G  G GF IAM+ L+ 
Sbjct: 214  SCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGTEGQGFLIAMKGLNG 273

Query: 881  GRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR 1060
            GRI +AS +LG A A++     + + R+ FG PL + Q +QF+LADMA  L ++RL+   
Sbjct: 274  GRINVASCSLGAAHASVILTQEHLKVRKQFGAPLARSQYLQFQLADMATKLVASRLMIRT 333

Query: 1061 AAM-LKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITE 1237
            AA+ L++ ++  +                     +Q+ GG GY+ +   +++ RD+R+ +
Sbjct: 334  AAVALQEEREDAVALCSMAKLFATEECFAICNQALQMHGGYGYLKDYAVQQYMRDSRVHQ 393

Query: 1238 IYEGTSEIQRLVIAGHLLK 1294
            I EG++E+ R++I+ +LL+
Sbjct: 394  ILEGSNEVMRMLISRNLLQ 412


>ref|NP_766266.3| acyl-CoA dehydrogenase family member 9, mitochondrial precursor [Mus
            musculus].
          Length = 625

 Score =  193 bits (491), Expect = 3e-49
 Identities = 131/356 (36%), Positives = 188/356 (52%), Gaps = 11/356 (3%)
 Frame = +2

Query: 245  QVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSV 424
            ++D+E + P   ++K+  LGL  + VPEE  G GL    Y    E IS   AS  V ++ 
Sbjct: 90   KIDQEGKIPVDTLEKLKSLGLFGIQVPEEYGGLGLSNTMYARLGEIISLD-ASITVTLAA 148

Query: 425  NNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS-- 598
            + ++ L  I+  G++EQK +++   +SG+ +  F L+EP +GSD            D   
Sbjct: 149  HQAIGLKGIILVGNEEQKAKYLPKLSSGEHIAAFCLTEPASGSDAASIQTRATLSEDKKY 208

Query: 599  WVLSGTKAWITNAWEASAAVVFAST-----DRSLQNKGISAFLVPMPTPGLTLGKKEDKL 763
            ++L+G+K WITN   A+   VFA T     D S  +K ++AF+V     G+T GK EDKL
Sbjct: 209  FILNGSKVWITNGGLANIFTVFAKTEVVDSDGSKTDK-MTAFIVERDFGGITNGKPEDKL 267

Query: 764  GIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAV 943
            GIR S+T  + FE+ R+P EN+LGE G GFK+AM  L+ GR  + S   G+ +  ++   
Sbjct: 268  GIRGSNTCEVHFENTRVPVENVLGEVGGGFKVAMNILNSGRFSMGSAVAGMLKKLIELTA 327

Query: 944  NYAENRRAFGVPLTKLQGIQFK---LADMALALESARLLTWRAAMLKDNKKPFIK-EXXX 1111
             YA  R+ F   L++   IQ K   +A  A  +ES   LT  + ML     P    E   
Sbjct: 328  EYACTRKQFNRNLSEFGLIQEKFALMAQKAYVMESMAYLT--SGMLDQPGFPDCSIEAAM 385

Query: 1112 XXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                            +QILGG GY+ + P ER  RDARI  I+EGT+EI RL IA
Sbjct: 386  VKVFSSEAAWQCVSEALQILGGSGYMKDYPYERMLRDARILLIFEGTNEILRLFIA 441


>ref|NP_031407.2| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Mus musculus].
          Length = 430

 Score =  188 bits (477), Expect = 1e-47
 Identities = 114/372 (30%), Positives = 186/372 (50%), Gaps = 2/372 (0%)
 Frame = +2

Query: 182  YQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLA 361
            + + R++ R F ++E++P   + +K         +K G+ GL+ +++ E+  G G D L+
Sbjct: 57   HDIFRESVRKFFQEEVIPHHTEWEKAGEVSREVWEKAGKQGLLGINIAEKHGGIGGDLLS 116

Query: 362  YTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEP 541
              +  EE +     TG   S+++ + +  I  +G+KEQ +++I   T+G  +G  A++EP
Sbjct: 117  TAVTWEEQAYSNC-TGPGFSLHSDIVMPYIANYGTKEQIEKFIPQMTAGKCIGAIAMTEP 175

Query: 542  GNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNK--GISAFLV 715
            G GSD              W+L+G+K +ITN W +   +V A T+R  ++   GIS FLV
Sbjct: 176  GAGSDLQGVRTNAKRSGSDWILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLV 235

Query: 716  PMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGI 895
                 G   G+K  K+G++A  TA L FED R+P   LLGE   GF   MQ L   R+ I
Sbjct: 236  ENGMKGFIKGRKLHKMGMKAQDTAELFFEDVRLPANALLGEENKGFYYLMQELPQERLLI 295

Query: 896  ASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLK 1075
            A  A+   +   +   NY + R+AFG  +  +Q +Q KLA++   +   R        L 
Sbjct: 296  AELAISACEFMFEETRNYVKQRKAFGKTVAHIQTVQHKLAELKTHICVTRAFVDSCLQLH 355

Query: 1076 DNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTS 1255
            + K+                        +Q+ GG GY+ E P  + Y DAR+  IY GT+
Sbjct: 356  ETKRLDSGSASMAKYWASELQNSVAYECVQLHGGWGYMWEYPIAKAYVDARVQPIYGGTN 415

Query: 1256 EIQRLVIAGHLL 1291
            EI + +IA  ++
Sbjct: 416  EIMKELIARQIV 427


>ref|NP_059062.1| very long-chain specific acyl-CoA dehydrogenase, mitochondrial
            precursor [Mus musculus].
          Length = 656

 Score =  169 bits (427), Expect = 7e-42
 Identities = 120/384 (31%), Positives = 184/384 (47%), Gaps = 9/384 (2%)
 Frame = +2

Query: 155  FQSVELPETYQMLRQTCRDFAEK-ELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEE 331
            + SV   E  Q L++     A   E V   A+ D   +  +  ++ + ELG   + VP E
Sbjct: 91   YPSVLSEEQAQFLKELVGPVARFFEEVNDPAKNDALEKVEDDTLQGLKELGAFGLQVPSE 150

Query: 332  LSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGD 511
            L G GL    Y    E +        V +  + S+    IL +G+K Q+++++    SG 
Sbjct: 151  LGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQSIGFKGILLYGTKAQREKYLPRVASGQ 210

Query: 512  KVGCFALSEPGNGSDXXXXXXXXXXDHDS--WVLSGTKAWITNAWEASAAVVFASTDRSL 685
             +  F L+EP +GSD                + L+G+K WI+N   A    VFA T    
Sbjct: 211  ALAAFCLTEPSSGSDVASIRSSAIPSPCGKYYTLNGSKIWISNGGLADIFTVFAKTPIKD 270

Query: 686  QNKG-----ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMG 850
               G     I+AF+V     G+T G  E K+GI+AS+T+ + F+  ++P EN+LGE G G
Sbjct: 271  AATGAVKEKITAFVVERSFGGVTHGLPEKKMGIKASNTSEVYFDGVKVPSENVLGEVGDG 330

Query: 851  FKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALA 1030
            FK+A+  L+ GR G+A+   G  ++ +  AV++A NR  FG  +     IQ KLA MA+ 
Sbjct: 331  FKVAVNILNNGRFGMAATLAGTMKSLIAKAVDHATNRTQFGDKIHNFGVIQEKLARMAIL 390

Query: 1031 LESARLLTWR-AAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAE 1207
                  + +  +A +    K F  E                   +QI+GGMG++ E   E
Sbjct: 391  QYVTESMAYMLSANMDQGFKDFQIEAAISKIFCSEAAWKVADECIQIMGGMGFMKEPGVE 450

Query: 1208 RHYRDARITEIYEGTSEIQRLVIA 1279
            R  RD RI  I+EG ++I RL +A
Sbjct: 451  RVLRDIRIFRIFEGANDILRLFVA 474


>ref|NP_001038209.1| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 438

 Score =  156 bits (394), Expect = 5e-38
 Identities = 110/372 (29%), Positives = 175/372 (47%), Gaps = 2/372 (0%)
 Frame = +2

Query: 167  ELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAG 346
            +L    +++R T R++ ++ L+      ++   F    V +MGELG++   + +    AG
Sbjct: 59   QLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAG 117

Query: 347  LDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCF 526
            +  +AY +   E+ R  +    +MSV +SL + PI  +GS+EQ+Q+++     G+ +GCF
Sbjct: 118  VSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCF 177

Query: 527  ALSEPGNGSDXXXXXXXXXXD--HDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGI 700
             L+EP +GSD          +  + S+ LSGTK WITN+  A   +V+A      ++  I
Sbjct: 178  GLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWA----RCEDNCI 233

Query: 701  SAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDM 880
              F++     GL+  + E K  +RAS+T  +I +   +P+EN+L             L+ 
Sbjct: 234  RGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNT 292

Query: 881  GRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR 1060
             R GI    LG A+  L  A  YA +R  FGVPL + Q +Q KLADM   +        +
Sbjct: 293  ARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQ 352

Query: 1061 AAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEI 1240
               LKD  K   +                      ILGG G   E    RH  +      
Sbjct: 353  LGRLKDQDKATPEMVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNT 412

Query: 1241 YEGTSEIQRLVI 1276
            YEGT +I  L++
Sbjct: 413  YEGTHDIHALIL 424


>ref|NP_032123.2| glutaryl-CoA dehydrogenase, mitochondrial precursor [Mus musculus].
          Length = 438

 Score =  156 bits (394), Expect = 5e-38
 Identities = 110/372 (29%), Positives = 175/372 (47%), Gaps = 2/372 (0%)
 Frame = +2

Query: 167  ELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAG 346
            +L    +++R T R++ ++ L+      ++   F    V +MGELG++   + +    AG
Sbjct: 59   QLTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTI-KGYGCAG 117

Query: 347  LDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCF 526
            +  +AY +   E+ R  +    +MSV +SL + PI  +GS+EQ+Q+++     G+ +GCF
Sbjct: 118  VSSVAYGLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPGLAKGELLGCF 177

Query: 527  ALSEPGNGSDXXXXXXXXXXD--HDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGI 700
             L+EP +GSD          +  + S+ LSGTK WITN+  A   +V+A      ++  I
Sbjct: 178  GLTEPNHGSDPGGMETRARHNPSNQSYTLSGTKTWITNSPVADLFIVWA----RCEDNCI 233

Query: 701  SAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDM 880
              F++     GL+  + E K  +RAS+T  +I +   +P+EN+L             L+ 
Sbjct: 234  RGFILEKGMRGLSAPRIEGKFSLRASATGMIIMDSVEVPEENVLPNVS-SLAGPFGCLNT 292

Query: 881  GRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR 1060
             R GI    LG A+  L  A  YA +R  FGVPL + Q +Q KLADM   +        +
Sbjct: 293  ARYGITWGVLGAAEFCLHTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQ 352

Query: 1061 AAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEI 1240
               LKD  K   +                      ILGG G   E    RH  +      
Sbjct: 353  LGRLKDQDKATPEMVSMLKRNNCGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNT 412

Query: 1241 YEGTSEIQRLVI 1276
            YEGT +I  L++
Sbjct: 413  YEGTHDIHALIL 424


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,425,424
Number of extensions: 1524168
Number of successful extensions: 6131
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 6058
Number of HSP's successfully gapped: 16
Length of query: 498
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 392
Effective length of database: 12,433,743
Effective search space: 4874027256
Effective search space used: 4874027256
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007409
         (1494 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mi...   737   0.0  
Alignment   gi|XP_001926332.2| PREDICTED: short/branched chain specific acy...   255   4e-68
Alignment   gi|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, m...   240   2e-63
Alignment   gi|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial ...   234   7e-62
Alignment   gi|NP_001230503.1| acyl-CoA dehydrogenase family, member 8 [Sus...   218   5e-57
Alignment   gi|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mit...   208   7e-54
Alignment   gi|NP_999062.1| long-chain specific acyl-CoA dehydrogenase, mit...   191   9e-49
Alignment   gi|XP_003354989.1| PREDICTED: very long-chain specific acyl-CoA...   186   3e-47
Alignment   gi|XP_003131991.2| PREDICTED: very long-chain specific acyl-CoA...   186   3e-47
Alignment   gi|XP_003356478.1| PREDICTED: acyl-CoA dehydrogenase-like [Sus ...   182   4e-46

>ref|NP_999063.1| short-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Sus scrofa].
          Length = 413

 Score =  737 bits (1902), Expect = 0.0
 Identities = 377/413 (91%), Positives = 381/413 (92%), Gaps = 1/413 (0%)
 Frame = +2

Query: 71   MAAALLARACGPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQV 250
            MAAALLARACGPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQV
Sbjct: 1    MAAALLARACGPVRGALWPRDCRRLHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQV 60

Query: 251  DKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNN 430
            DKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNN
Sbjct: 61   DKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNN 120

Query: 431  SLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLS 610
             LYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSD          DHDSWVLS
Sbjct: 121  FLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDAGAAATTAQADHDSWVLS 180

Query: 611  GTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTAN 790
            GTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT GLTLGKKEDKLGIRASSTAN
Sbjct: 181  GTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTAGLTLGKKEDKLGIRASSTAN 240

Query: 791  LIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAF 970
            LIFEDCRIPKENLLGEPGMGFKIAM+TLDMGRIGIAS+ALGI+QAALDCAVNYAENRRAF
Sbjct: 241  LIFEDCRIPKENLLGEPGMGFKIAMKTLDMGRIGIASKALGISQAALDCAVNYAENRRAF 300

Query: 971  GVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK-PFIKEXXXXXXXXXXXXXXX 1147
            GVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK PFIKE               
Sbjct: 301  GVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKKNPFIKEPAMAKLAASEAATAI 360

Query: 1148 XXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 1306
                +QILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS
Sbjct: 361  THQAIQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 413


>ref|XP_001926332.2| PREDICTED: short/branched chain specific acyl-CoA dehydrogenase,
            mitochondrial [Sus scrofa].
          Length = 431

 Score =  255 bits (652), Expect = 4e-68
 Identities = 133/371 (35%), Positives = 223/371 (60%)
 Frame = +2

Query: 188  MLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYT 367
            M++ T + FA++++ P+ +++D+  +  ++ ++ + + GLM ++   +  G G  + +  
Sbjct: 62   MIKNTVKKFAQEQIAPLVSKMDENSKMEKSVIEGLFQQGLMGIETEPKYGGTGASFFSSV 121

Query: 368  IAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGN 547
            + +EE+++  AS  ++  + N++    I +FG++ QK  ++T   + +++G F LSEP  
Sbjct: 122  LVIEELAKVDASVALVCDLQNTVINDLIGRFGTEAQKATYLTKLAT-EQLGSFCLSEPSA 180

Query: 548  GSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNKGISAFLVPMPT 727
            GSD          D D +V++G+K WIT+A +A   +V A+ D +L  KGI+ FLV   T
Sbjct: 181  GSDSFSLKTRADKDGDYYVINGSKMWITSAEDAGLFLVMANVDPALGYKGITCFLVDRDT 240

Query: 728  PGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQA 907
             GL +GK E+KLGIRASST  +  E+ ++P+ N++G+ G G+K A+Q+L+ GRIGIA+Q 
Sbjct: 241  EGLRVGKPENKLGIRASSTCPVTLENAKVPEANIVGQIGHGYKYAIQSLNKGRIGIAAQM 300

Query: 908  LGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLKDNKK 1087
            LG+AQ   D  + Y + R  FG  +   QG+Q ++A  A  LE+ARLLT+ AA L +  +
Sbjct: 301  LGLAQGCFDLTIPYLKERVQFGKRIFDFQGLQHQVAHTATQLEAARLLTYNAARLLEAGR 360

Query: 1088 PFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQR 1267
            PFIKE                   ++ +G +GY  + P E+++RDA+I  IYEGTS IQ 
Sbjct: 361  PFIKEASMAKYYASEVAIQTTNKCIEWMGAVGYTKDYPMEKYFRDAKIGTIYEGTSNIQL 420

Query: 1268 LVIAGHLLKSY 1300
              IA ++ K Y
Sbjct: 421  NTIAKNVSKEY 431


>ref|NP_999204.1| medium-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Sus scrofa].
          Length = 421

 Score =  240 bits (612), Expect = 2e-63
 Identities = 139/386 (36%), Positives = 217/386 (56%), Gaps = 4/386 (1%)
 Frame = +2

Query: 161  SVELPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSG 340
            S +L E  +  + T R FA +E++P+AA+ D+   +P   +K+  ELGLM   +PE   G
Sbjct: 38   SFKLTEQQKEFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGG 97

Query: 341  AGLDYLAYTIAMEEISRGCASTGVIMSVN-NSLYLGPILKFGSKEQKQQWITPFTSGDKV 517
             GL  +   +  EE++ GC  TGV  ++  N+L   P++  G+ +Q+++++   T    +
Sbjct: 98   LGLGIIDSCLITEELAYGC--TGVQTAIEANTLGQVPLIIGGNYQQQKKYLGRMTEEPLM 155

Query: 518  GCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTD---RSLQ 688
              + ++EPG GSD            D ++++G K WITN  +A+   + A +D   ++  
Sbjct: 156  CAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPA 215

Query: 689  NKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQ 868
            +K  + F+V   TPG+ +G+KE  +G R S T  ++FED R+PKEN+L   G GFKIAM 
Sbjct: 216  SKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTGEGAGFKIAMG 275

Query: 869  TLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARL 1048
            T D  R  +A+ A+G+AQ ALD A  YA  R+ FG  L + QGI F LADMA+ ++ ARL
Sbjct: 276  TFDKTRPSVAAGAVGLAQRALDEATKYALGRKTFGKLLAEHQGISFLLADMAMKVDLARL 335

Query: 1049 LTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDAR 1228
               RAA   D+ +                        +Q+ GG G+ TE P E+  RDA+
Sbjct: 336  SYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKLMRDAK 395

Query: 1229 ITEIYEGTSEIQRLVIAGHLLKSYRS 1306
            I +IYEGT++IQR++IA   +  Y++
Sbjct: 396  IYQIYEGTAQIQRIIIAREHIGRYKN 421


>ref|NP_001161107.1| isovaleryl-CoA dehydrogenase, mitochondrial [Sus scrofa].
          Length = 426

 Score =  234 bits (598), Expect = 7e-62
 Identities = 132/373 (35%), Positives = 201/373 (53%), Gaps = 4/373 (1%)
 Frame = +2

Query: 170  LPETYQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQV--KKMGELGLMAMDVPEELSGA 343
            L E  + LRQT   F ++ L P A ++D+ + F   +   K++G LG++ +  P +  G 
Sbjct: 45   LSEEQKQLRQTMTKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITTPVQYGGT 104

Query: 344  GLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGC 523
            GL YL + + MEEISR   + G+    +++L +  I++ G++ QK++++    SG+ +G 
Sbjct: 105  GLGYLEHVVVMEEISRASGAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEYIGA 164

Query: 524  FALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSL--QNKG 697
             A+SE   GSD            D +VL+G K WITN  +A   VV+A TD +    ++G
Sbjct: 165  LAMSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLVVYAKTDLAAVPPSRG 224

Query: 698  ISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLD 877
            I+AF+V    PG +  KK DKLG+R S+T  LIFEDC++P  N+LG+   G  + M  LD
Sbjct: 225  ITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAVNILGQLSKGVYVLMSGLD 284

Query: 878  MGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTW 1057
            + R+ +A   LG+ QA LD  + Y   R AFG  +   Q +Q K+ADM   L + R   +
Sbjct: 285  LERLVLAGGPLGLMQAVLDHTIPYLHMREAFGQKIGHFQLMQGKMADMYTRLMACRQYVY 344

Query: 1058 RAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITE 1237
              A   D      K+                   +Q LGG GY+ + P  R  RDA++ E
Sbjct: 345  NVAKACDEGHCTPKDCAGVVLYSAECATKVALDGIQCLGGNGYINDFPMGRFLRDAKLYE 404

Query: 1238 IYEGTSEIQRLVI 1276
            I  GTSE++RL+I
Sbjct: 405  IGAGTSEVRRLII 417


>ref|NP_001230503.1| acyl-CoA dehydrogenase family, member 8 [Sus scrofa].
          Length = 415

 Score =  218 bits (556), Expect = 5e-57
 Identities = 136/405 (33%), Positives = 224/405 (55%), Gaps = 4/405 (0%)
 Frame = +2

Query: 92   RACGPVRGALWP-RDCRR--LHTIFQSVELPETYQMLRQTCRDFAEKELVPIAAQVDKEH 262
            R C   RG   P ++ RR  +  I  S  L E  +  ++    FA +E++P  A+ D++ 
Sbjct: 12   RLCDLRRGLWAPAKNGRRSVVSCIDPSTGLNEEQKEFQRVAFSFAAQEMMPNMAEWDQKE 71

Query: 263  RFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYL 442
             FP   ++K   LG   + V  ++ G+GL  L  ++  E ++ GC ST   MS++N + +
Sbjct: 72   LFPVDMMRKAARLGFGGVYVRTDVGGSGLSRLDTSVIFEALATGCTSTTAYMSIHN-MCV 130

Query: 443  GPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKA 622
              I  FG++EQ+ ++  P  + +K   + L+EPG+GSD            D ++L+G+KA
Sbjct: 131  WIIDAFGNEEQRHRFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAEQQGDHYILNGSKA 190

Query: 623  WITNAWEASAAVVFASTDRSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFE 802
            +I+   EA   VV   T     +KGIS  +V   TPGL+ GKKE K+G  +  T  +IFE
Sbjct: 191  FISGGGEADIYVVMCRTGGP-GHKGISCVVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFE 249

Query: 803  DCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPL 982
            DC +P  N +G+ G GF IAM+ L+ GRI +AS +LG A A++    ++ + R+ FG PL
Sbjct: 250  DCAVPVANRIGDEGQGFLIAMRGLNGGRINVASCSLGAAHASIILTRDHLKVRKQFGEPL 309

Query: 983  TKLQGIQFKLADMALALESARLLTWRAAM-LKDNKKPFIKEXXXXXXXXXXXXXXXXXXX 1159
               Q +QFKLADMA  L ++RL+   AA+ L++ ++  +                     
Sbjct: 310  ANNQYLQFKLADMATKLVASRLMIRSAAVALQEEREDAVALCSMAKLFATDECFEICNQA 369

Query: 1160 MQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLK 1294
            +Q+ GG GY+ +   +++ RD+R+ +I EG++E+ R++I+  LL+
Sbjct: 370  LQMHGGYGYLKDYAVQQYVRDSRVHQILEGSNEVMRMLISKSLLQ 414


>ref|XP_003121646.2| PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Sus
            scrofa].
          Length = 349

 Score =  208 bits (529), Expect = 7e-54
 Identities = 117/321 (36%), Positives = 173/321 (53%), Gaps = 2/321 (0%)
 Frame = +2

Query: 320  VPEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPF 499
            +P +  G GL YL + + MEEISR   + G+    +++L L  I++ G++ QK++++   
Sbjct: 20   LPVQYGGTGLGYLEHVVVMEEISRASGAVGLSYGAHSNLCLNQIVRNGNEAQKEKYLPKL 79

Query: 500  TSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDR 679
             SG+ +G  A+SE   GSD            D +VL+G K WITN  +A   VV+A TD 
Sbjct: 80   ISGEYIGALAMSETNAGSDVVSMKLKADKKGDYYVLNGNKFWITNGPDADVLVVYAKTDL 139

Query: 680  SL--QNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGF 853
            +    ++GI+AF+V    PG +  KK DKLG+R S+T  LIFEDC++P  N+LG+   G 
Sbjct: 140  AAVPPSRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKVPAVNILGQLSKGV 199

Query: 854  KIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALAL 1033
             + M  LD+ R+ +A   LG+ QA LD  + Y   R AFG  +   Q +Q K+ADM   L
Sbjct: 200  YVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHMREAFGQKIGHFQLMQGKMADMYTRL 259

Query: 1034 ESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERH 1213
             + R   +  A   D      K+                   +Q LGG GY+ + P  R 
Sbjct: 260  MACRQYVYNVAKACDEGHCTPKDCAGVVLYSAECATKVALDGIQCLGGNGYINDFPMGRF 319

Query: 1214 YRDARITEIYEGTSEIQRLVI 1276
             RDA++ EI  GTSE++RL+I
Sbjct: 320  LRDAKLYEIGAGTSEVRRLII 340


>ref|NP_999062.1| long-chain specific acyl-CoA dehydrogenase, mitochondrial precursor
            [Sus scrofa].
          Length = 430

 Score =  191 bits (485), Expect = 9e-49
 Identities = 117/372 (31%), Positives = 186/372 (50%), Gaps = 2/372 (0%)
 Frame = +2

Query: 182  YQMLRQTCRDFAEKELVPIAAQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLA 361
            + + R++ R F ++E++P  A+ +K         +K G+ GL+ +++ E   G G D  +
Sbjct: 57   HDIFRESVRKFFQEEVIPHHAEWEKAGEVSRELWEKAGKQGLLGINIAERHGGIGGDLYS 116

Query: 362  YTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEP 541
              I  EE +     TG   S+++ + +  I  +GS+EQ + +I   T+G  +G  A++EP
Sbjct: 117  AAIVWEEQAYSNC-TGPGFSLHSDIVMPYIANYGSEEQIKHFIPQMTAGKCIGAIAMTEP 175

Query: 542  GNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEASAAVVFASTDRSLQNK--GISAFLV 715
            G GSD          D   W+L+G+K +ITN W +   +V A T+R  ++   GIS FLV
Sbjct: 176  GAGSDLQGVRTNAKKDGSDWILNGSKVFITNGWLSDVVIVVAVTNREARSPAHGISLFLV 235

Query: 716  PMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGI 895
                 G   G+K  K+G++A  TA L FED R+P   LLGE   GF   MQ L   R+ I
Sbjct: 236  ENGMKGFVKGRKLHKIGLKAQDTAELFFEDVRLPASALLGEENKGFYYLMQELPQERLLI 295

Query: 896  ASQALGIAQAALDCAVNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWRAAMLK 1075
            A  A+  ++   +   NY + R+AFG  +  +Q +Q KLA++   +   R        L 
Sbjct: 296  AELAVSASEFMFEETRNYVKQRKAFGKTVAHIQTVQHKLAELKTHICVTRAFVDSCLQLH 355

Query: 1076 DNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTS 1255
            + K+                        +Q+ GG GY+ E P  R Y DAR+  IY GT+
Sbjct: 356  ETKRLESAAASMAKYWASELQNSVAYDCVQLHGGWGYMWEYPIARAYVDARVQPIYGGTN 415

Query: 1256 EIQRLVIAGHLL 1291
            EI + +IA  ++
Sbjct: 416  EIMKELIAREIV 427


>ref|XP_003354989.1| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
            mitochondrial-like isoform 2 [Sus scrofa].
          Length = 633

 Score =  186 bits (472), Expect = 3e-47
 Identities = 120/354 (33%), Positives = 179/354 (50%), Gaps = 8/354 (2%)
 Frame = +2

Query: 242  AQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMS 421
            A+ D   R  E  ++ + ELG   + VP EL G GL    Y   +E +       G+++ 
Sbjct: 98   AKNDMLERVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGIVLG 157

Query: 422  VNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS- 598
             + S+    IL FG+K QK++++    SG+ +  F L+EP +GSD               
Sbjct: 158  AHQSIGFKGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAASIRSSAVPSPCGK 217

Query: 599  -WVLSGTKAWITNAWEASAAVVFASTDRSLQNKG-----ISAFLVPMPTPGLTLGKKEDK 760
             + L+G+K WI+N   A    VFA T  +    G     I+AFLV     G+T G  E K
Sbjct: 218  YYTLNGSKIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVERGFGGVTHGPPEKK 277

Query: 761  LGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCA 940
            +GI+AS+TA + F++ ++P EN+LGE G GFK+AM  L+ GR G+A+   G  +A +  A
Sbjct: 278  MGIKASNTAEVYFDEVQVPTENVLGEVGGGFKVAMHILNNGRFGMAAAMAGTMKAIIAKA 337

Query: 941  VNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR-AAMLKDNKKPFIKEXXXXX 1117
            VN+A NR  FG  +     IQ KLA MA+       + +  +A +      F  E     
Sbjct: 338  VNHAANRTQFGEKIHNFGVIQEKLARMAMLQYVTESMAYMVSANMDQGSTDFQIEAAISK 397

Query: 1118 XXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                          +Q++GGMG++ E   ER  RD RI  I+EGT++I RL +A
Sbjct: 398  IFGSEAAWKVTDECIQVMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 451


>ref|XP_003131991.2| PREDICTED: very long-chain specific acyl-CoA dehydrogenase,
            mitochondrial-like isoform 1 [Sus scrofa].
          Length = 652

 Score =  186 bits (472), Expect = 3e-47
 Identities = 120/354 (33%), Positives = 179/354 (50%), Gaps = 8/354 (2%)
 Frame = +2

Query: 242  AQVDKEHRFPEAQVKKMGELGLMAMDVPEELSGAGLDYLAYTIAMEEISRGCASTGVIMS 421
            A+ D   R  E  ++ + ELG   + VP EL G GL    Y   +E +       G+++ 
Sbjct: 117  AKNDMLERVEETTMQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGIVLG 176

Query: 422  VNNSLYLGPILKFGSKEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDS- 598
             + S+    IL FG+K QK++++    SG+ +  F L+EP +GSD               
Sbjct: 177  AHQSIGFKGILLFGTKAQKEKYLPKVASGEVMAAFCLTEPSSGSDAASIRSSAVPSPCGK 236

Query: 599  -WVLSGTKAWITNAWEASAAVVFASTDRSLQNKG-----ISAFLVPMPTPGLTLGKKEDK 760
             + L+G+K WI+N   A    VFA T  +    G     I+AFLV     G+T G  E K
Sbjct: 237  YYTLNGSKIWISNGGLADLFTVFAKTPVTDPATGAVKEKITAFLVERGFGGVTHGPPEKK 296

Query: 761  LGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCA 940
            +GI+AS+TA + F++ ++P EN+LGE G GFK+AM  L+ GR G+A+   G  +A +  A
Sbjct: 297  MGIKASNTAEVYFDEVQVPTENVLGEVGGGFKVAMHILNNGRFGMAAAMAGTMKAIIAKA 356

Query: 941  VNYAENRRAFGVPLTKLQGIQFKLADMALALESARLLTWR-AAMLKDNKKPFIKEXXXXX 1117
            VN+A NR  FG  +     IQ KLA MA+       + +  +A +      F  E     
Sbjct: 357  VNHAANRTQFGEKIHNFGVIQEKLARMAMLQYVTESMAYMVSANMDQGSTDFQIEAAISK 416

Query: 1118 XXXXXXXXXXXXXXMQILGGMGYVTEMPAERHYRDARITEIYEGTSEIQRLVIA 1279
                          +Q++GGMG++ E   ER  RD RI  I+EGT++I RL +A
Sbjct: 417  IFGSEAAWKVTDECIQVMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVA 470


>ref|XP_003356478.1| PREDICTED: acyl-CoA dehydrogenase-like [Sus scrofa].
          Length = 553

 Score =  182 bits (462), Expect = 4e-46
 Identities = 120/343 (34%), Positives = 181/343 (52%), Gaps = 5/343 (1%)
 Frame = +2

Query: 293  GELGLMAMDV--PEELSGAGLDYLAYTIAMEEISRGCASTGVIMSVNNSLYLGPILKFGS 466
            GE+G+ ++D+  P+ +     D   Y   + ++ +  +   +IMS N +  +G   K   
Sbjct: 224  GEIGMASIDLKSPQIILSQFADNTTYAKVITKL-KILSPLEIIMS-NTACVVGNSTKL-- 279

Query: 467  KEQKQQWITPFTSGDKVGCFALSEPGNGSDXXXXXXXXXXDHDSWVLSGTKAWITNAWEA 646
                    T  T   K  C  ++EPG GSD            D ++++G K WITN  +A
Sbjct: 280  -------FTLITENFKAYC--VTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKA 330

Query: 647  SAAVVFASTD---RSLQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIP 817
            +   + A +D   ++  +K  + F+V   TPG+ +G+KE  +G R S T  ++FED R+P
Sbjct: 331  NWYFLLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVP 390

Query: 818  KENLLGEPGMGFKIAMQTLDMGRIGIASQALGIAQAALDCAVNYAENRRAFGVPLTKLQG 997
            KEN+L   G GFKIAM T D  R  +A+ A+G+AQ ALD A  YA  R+ FG  L + QG
Sbjct: 391  KENVLTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQG 450

Query: 998  IQFKLADMALALESARLLTWRAAMLKDNKKPFIKEXXXXXXXXXXXXXXXXXXXMQILGG 1177
            I F LADMA+ +E ARL   RAA   D+ +                        +Q+ GG
Sbjct: 451  ISFLLADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGG 510

Query: 1178 MGYVTEMPAERHYRDARITEIYEGTSEIQRLVIAGHLLKSYRS 1306
             G+ TE P E+  RDA+I +IYEGT++IQR++IA   +  Y++
Sbjct: 511  NGFNTEYPVEKLMRDAKIYQIYEGTAQIQRIIIAREHIGRYKN 553


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,698,761
Number of extensions: 1206835
Number of successful extensions: 5397
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 5331
Number of HSP's successfully gapped: 19
Length of query: 498
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 395
Effective length of database: 8,779,541
Effective search space: 3467918695
Effective search space used: 3467918695
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007409
         (1494 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                         509   e-141

>Sscrofa_Chr14 
||          Length = 153851969

 Score =  509 bits (257), Expect = e-141
 Identities = 323/342 (94%), Gaps = 3/342 (0%)
 Strand = Plus / Plus

                                                                            
Query: 1155     aggccatgcagatcttgggtggcatgggctatgtgacagagatgcctgctgagcggcact 1214
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43123854 aggccatgcagatcttgggtggcatgggctatgtgacagagatgcctgctgagcggcact 43123913

                                                                            
Query: 1215     accgtgacgcccgcatcactgagatttacgaaggcaccagtgagatccagaggctggtga 1274
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43123914 accgtgacgcccgcatcactgagatttacgaaggcaccagtgagatccagaggctggtga 43123973

                                                                            
Query: 1275     tcgccgggcacctgctcaagagctacaggagctgagccctctgtagggcccaacagtgcc 1334
                |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 43123974 tcgccgggcacctgctcaagagctacaggagctgagccctctgtagggccaaccagtgcc 43124033

                                                                            
Query: 1335     ctccggaggcagggctggcctgaggntcacgggagaaggcgcngaaccatgtgcctttac 1394
                ||||||||||||||||||||||||| |||||||||| |  || || ||||||||||||||
Sbjct: 43124034 ctccggaggcagggctggcctgagggtcacgggagaggcggcggagccatgtgcctttac 43124093

                                                                            
Query: 1395     cctgactccnagtcagggggccacgccctctctttggca-gactcccccagaaccagccc 1453
                ||||||||| |||||||||||||||||  ||| ||| || |||||||||||||||   ||
Sbjct: 43124094 cctgactccaagtcagggggccacgcctcctc-ttgccaggactcccccagaacccagcc 43124152

                                                          
Query: 1454     cttctgggtggacctg-cactctcaccttcatccacccggga 1494
                |||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 43124153 cttctgggtggacctgccactctcaccctcatccacccggga 43124194



 Score =  343 bits (173), Expect = 2e-91
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                            
Query: 693      agggcatcagcgccttcctggttcccatgccgacgcctgggctcacgctagggaagaaag 752
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43122759 agggcatcagcgccttcctggttcccatgccgacgcctgggctcacgctagggaagaaag 43122818

                                                                            
Query: 753      aggacaagctgggcatccgggcctcatccaccgccaacctcatctttgaggactgtcgca 812
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43122819 aggacaagctgggcatccgggcctcatccaccgccaacctcatctttgaggactgtcgca 43122878

                                                                     
Query: 813      tccccaaggagaacctgctgggggagcctggcatgggcttcaagatcgccatg 865
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43122879 tccccaaggagaacctgctgggggagcctggcatgggcttcaagatcgccatg 43122931



 Score =  337 bits (170), Expect = 1e-89
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                            
Query: 115      agctctctggcctcgggactgtcgtcgcttgcataccatcttccagtctgtggaactgcc 174
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43112036 agctctctggcctcgggactgtcgtcgcttgcataccatcttccagtctgtggaactgcc 43112095

                                                                            
Query: 175      tgagacataccagatgctgcgtcagacatgccgggattttgccgagaaggagctggttcc 234
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43112096 tgagacataccagatgctgcgtcagacatgccgggattttgccgagaaggagctggttcc 43112155

                                                                  
Query: 235      cattgcagcccaggtggacaaggaacatcgcttcccggaggctcaggtga 284
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43112156 cattgcagcccaggtggacaaggaacatcgcttcccggaggctcaggtga 43112205



 Score =  309 bits (156), Expect = 2e-81
 Identities = 156/156 (100%)
 Strand = Plus / Plus

                                                                            
Query: 540      cagggaacggcagcgacgcgggggctgctgccaccaccgcccaggcagaccatgactcgt 599
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43122332 cagggaacggcagcgacgcgggggctgctgccaccaccgcccaggcagaccatgactcgt 43122391

                                                                            
Query: 600      gggtcctgagtggcaccaaagcctggatcaccaacgcctgggaggcctcggccgccgtgg 659
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43122392 gggtcctgagtggcaccaaagcctggatcaccaacgcctgggaggcctcggccgccgtgg 43122451

                                                    
Query: 660      tcttcgccagcacggacagatccttgcagaacaagg 695
                ||||||||||||||||||||||||||||||||||||
Sbjct: 43122452 tcttcgccagcacggacagatccttgcagaacaagg 43122487



 Score =  303 bits (153), Expect = 1e-79
 Identities = 153/153 (100%)
 Strand = Plus / Plus

                                                                            
Query: 278      caggtgaagaagatgggcgagctggggctcatggccatggatgtgcccgaggagttaagt 337
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43121450 caggtgaagaagatgggcgagctggggctcatggccatggatgtgcccgaggagttaagt 43121509

                                                                            
Query: 338      ggtgccggcctggattacctggcctacaccatcgccatggaggagatcagccggggctgc 397
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43121510 ggtgccggcctggattacctggcctacaccatcgccatggaggagatcagccggggctgc 43121569

                                                 
Query: 398      gcctccaccggagtcatcatgagtgtcaacaat 430
                |||||||||||||||||||||||||||||||||
Sbjct: 43121570 gcctccaccggagtcatcatgagtgtcaacaat 43121602



 Score =  276 bits (139), Expect = 3e-71
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                            
Query: 865      gcaaaccctggacatgggccgcatcggcattgcctctcaggccctgggcattgcccaggc 924
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43123013 gcaaaccctggacatgggccgcatcggcattgcctctcaggccctgggcattgcccaggc 43123072

                                                                            
Query: 925      cgccctggactgtgctgtgaactatgctgaaaaccgcagggcctttggggtgccgctcac 984
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43123073 cgccctggactgtgctgtgaactatgctgaaaaccgcagggcctttggggtgccgctcac 43123132

                                   
Query: 985      caagctccagggcatccag 1003
                |||||||||||||||||||
Sbjct: 43123133 caagctccagggcatccag 43123151



 Score =  230 bits (116), Expect = 2e-57
 Identities = 116/116 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        ccttgctcactgttgagaggtctccgggtagcagtgcagtattgtcacctgactccggtc 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43110598 ccttgctcactgttgagaggtctccgggtagcagtgcagtattgtcacctgactccggtc 43110657

                                                                        
Query: 61       tcagtccttcatggctgccgcgctgctcgcccgagcctgcggccctgtccgcggag 116
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43110658 tcagtccttcatggctgccgcgctgctcgcccgagcctgcggccctgtccgcggag 43110713



 Score =  224 bits (113), Expect = 1e-55
 Identities = 113/113 (100%)
 Strand = Plus / Plus

                                                                            
Query: 431      tctctctacttgggacctatcctgaagtttggctccaaggagcagaaacagcagtggatc 490
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43121869 tctctctacttgggacctatcctgaagtttggctccaaggagcagaaacagcagtggatc 43121928

                                                                     
Query: 491      actcctttcaccagtggtgacaaagttggctgctttgccctcagtgaaccagg 543
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43121929 actcctttcaccagtggtgacaaagttggctgctttgccctcagtgaaccagg 43121981



 Score =  196 bits (99), Expect = 2e-47
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1002     agttcaagttggcggacatggccttggccctggagagtgcccggctgctgacctggcgcg 1061
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43123326 agttcaagttggcggacatggccttggccctggagagtgcccggctgctgacctggcgcg 43123385

                                                       
Query: 1062     ctgctatgctgaaggataataagaagccattcatcaagg 1100
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 43123386 ctgctatgctgaaggataataagaagccattcatcaagg 43123424



 Score =  119 bits (60), Expect = 5e-24
 Identities = 60/60 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1098     aggaggcggcaatggccaagctggctgcatcggaggctgcaactgccatcacccaccagg 1157
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43123623 aggaggcggcaatggccaagctggctgcatcggaggctgcaactgccatcacccaccagg 43123682


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,677,651
Number of extensions: 268
Number of successful extensions: 268
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 10
Length of query: 1494
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1473
Effective length of database: 2,808,413,156
Effective search space: 4136792578788
Effective search space used: 4136792578788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)