Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007415
(995 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776460.1| cytochrome b-245 heavy chain [Bos taurus]. 458 e-132
Alignment gi|NP_001178262.1| NADPH oxidase 3 [Bos taurus]. 256 3e-68
Alignment gi|XP_002690399.1| PREDICTED: NADPH oxidase 3 [Bos taurus]. 256 3e-68
Alignment gi|NP_001178269.1| NADPH oxidase 1 [Bos taurus]. 230 1e-62
Alignment gi|XP_002699860.1| PREDICTED: NADPH oxidase 1 isoform 1 [Bos ta... 230 1e-62
Alignment gi|XP_002699861.1| PREDICTED: NADPH oxidase 1 isoform 2 [Bos ta... 230 1e-62
Alignment gi|XP_001789635.1| PREDICTED: NADPH oxidase 1 isoform 2 [Bos ta... 230 1e-62
Alignment gi|XP_002699078.1| PREDICTED: NADPH oxidase 4 [Bos taurus]. 140 2e-33
Alignment gi|XP_614713.4| PREDICTED: NADPH oxidase 4 [Bos taurus]. 140 2e-33
Alignment gi|XP_002690988.1| PREDICTED: dual oxidase 2-like [Bos taurus]. 51 1e-06
>ref|NP_776460.1| cytochrome b-245 heavy chain [Bos taurus].
Length = 570
Score = 458 bits (1179), Expect(2) = e-132
Identities = 221/285 (77%), Positives = 233/285 (81%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VNEG+SIFVILVWLG+NVFLFV YY +YD ++ YTRK
Sbjct: 1 MGNWVVNEGISIFVILVWLGMNVFLFVWYYRVYDIPDKFFYTRKLLGSALALARAPAACL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHT IHTIAHL
Sbjct: 61 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTAIHTIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAG
Sbjct: 121 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGITGV 180
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
RRSYFEVFWYTHHLFVIFFIGLAIHGA+RIVR QT +SLL H+
Sbjct: 181 VITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAQRIVRGQTAESLLKHQ 240
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
+ C QNISQWGKI++CPIPEF+GNPPMTWKWI GPMFLYLCERL
Sbjct: 241 PRNCYQNISQWGKIENCPIPEFSGNPPMTWKWIVGPMFLYLCERL 285
Score = 32.0 bits (71), Expect(2) = e-132
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
LVRF +S QK VITKVV PFK
Sbjct: 285 LVRFWRSQQKVVITKVVTHPFK 306
>ref|NP_001178262.1| NADPH oxidase 3 [Bos taurus].
Length = 566
Score = 256 bits (653), Expect = 3e-68
Identities = 131/295 (44%), Positives = 180/295 (61%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MG W +NE LSI ++L WLG+N++LF++ + Y+ + ++YTR
Sbjct: 2 MGCWILNESLSIILVLSWLGVNLYLFINTFYWYEEEESFLYTRVILGSTLAWARASAVCL 61
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLPV RNL+SF+RG+SAC RRQLD+NL FHK+VA+ I ++ TIH AHL
Sbjct: 62 NFNCMLILLPVSRNLISFMRGTSACFRGPWRRQLDKNLKFHKLVAYGIVINATIHVGAHL 121
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FN+E ++ ++ ALS +GD PNETYLN +R N + +T +AG
Sbjct: 122 FNLEHYYWSQSPEAEGLVAALSKLGDTPNETYLNPIRTFHTNT---ITELLTTIAGITGL 178
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
R+ +E+FWYTHH+F+IFFIGLAIHGA RIVR QTP+SLL+H
Sbjct: 179 LISLALILIMTSSTEFIRQVSYELFWYTHHVFIIFFIGLAIHGAGRIVRGQTPESLLLHN 238
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERLGAVFAISPEV 961
C + +W +++ CP+P+F+G P WKW+ GPM LY CER+ + EV
Sbjct: 239 ITLCRDHPEEW-QVR-CPVPQFSGKEPSAWKWVLGPMVLYACERIIRFWRFQQEV 291
>ref|XP_002690399.1| PREDICTED: NADPH oxidase 3 [Bos taurus].
Length = 566
Score = 256 bits (653), Expect = 3e-68
Identities = 131/295 (44%), Positives = 180/295 (61%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MG W +NE LSI ++L WLG+N++LF++ + Y+ + ++YTR
Sbjct: 2 MGCWILNESLSIILVLSWLGVNLYLFINTFYWYEEEESFLYTRVILGSTLAWARASAVCL 61
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLPV RNL+SF+RG+SAC RRQLD+NL FHK+VA+ I ++ TIH AHL
Sbjct: 62 NFNCMLILLPVSRNLISFMRGTSACFRGPWRRQLDKNLKFHKLVAYGIVINATIHVGAHL 121
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FN+E ++ ++ ALS +GD PNETYLN +R N + +T +AG
Sbjct: 122 FNLEHYYWSQSPEAEGLVAALSKLGDTPNETYLNPIRTFHTNT---ITELLTTIAGITGL 178
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
R+ +E+FWYTHH+F+IFFIGLAIHGA RIVR QTP+SLL+H
Sbjct: 179 LISLALILIMTSSTEFIRQVSYELFWYTHHVFIIFFIGLAIHGAGRIVRGQTPESLLLHN 238
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERLGAVFAISPEV 961
C + +W +++ CP+P+F+G P WKW+ GPM LY CER+ + EV
Sbjct: 239 ITLCRDHPEEW-QVR-CPVPQFSGKEPSAWKWVLGPMVLYACERIIRFWRFQQEV 291
>ref|NP_001178269.1| NADPH oxidase 1 [Bos taurus].
Length = 561
Score = 230 bits (587), Expect(2) = 1e-62
Identities = 123/287 (42%), Positives = 164/287 (57%), Gaps = 2/287 (0%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ ++ WLGLNVFLFVH +L ++ + +Y YTR+
Sbjct: 1 MGNWVVNHWFSVLFLVAWLGLNVFLFVHAFLSFEKATKYYYTRQILGSALAWARASARCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN MLILLP+CRNLLSFLRG+ + + +R+QLD NL FHK+V +MI LHT IH IAHL
Sbjct: 61 NFNRMLILLPMCRNLLSFLRGTCSFYRSTLRKQLDHNLAFHKLVGYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGG-LYVAVTRLAGXXX 613
FN+E +R + LS++ + N ++LN I++P +YV T +AG
Sbjct: 121 FNLERYSRSRQATDGSLASILSNLPHQENYSWLN----PIQSPNTTVVYVTFTSIAGLTG 176
Query: 614 XXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVH 793
RRSYFEVFWYTHH+F+I+FIGL IHG IV QT +S+ +
Sbjct: 177 VIITVALVLMVTSAMEFIRRSYFEVFWYTHHIFIIYFIGLGIHGLGGIVWGQTEESMAEN 236
Query: 794 ESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
CA+ +W C P+F G P +WKWI P LY+ ER+
Sbjct: 237 HPHKCAEFFDKWDDPASYCKPPQFEGLPAESWKWILAPGILYIFERI 283
Score = 28.5 bits (62), Expect(2) = 1e-62
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
++RF +S QK VITKVV+ P K
Sbjct: 283 ILRFYRSQQKVVITKVVMHPSK 304
>ref|XP_002699860.1| PREDICTED: NADPH oxidase 1 isoform 1 [Bos taurus].
Length = 561
Score = 230 bits (587), Expect(2) = 1e-62
Identities = 123/287 (42%), Positives = 164/287 (57%), Gaps = 2/287 (0%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ ++ WLGLNVFLFVH +L ++ + +Y YTR+
Sbjct: 1 MGNWVVNHWFSVLFLVAWLGLNVFLFVHAFLSFEKATKYYYTRQILGSALAWARASARCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN MLILLP+CRNLLSFLRG+ + + +R+QLD NL FHK+V +MI LHT IH IAHL
Sbjct: 61 NFNRMLILLPMCRNLLSFLRGTCSFYRSTLRKQLDHNLAFHKLVGYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGG-LYVAVTRLAGXXX 613
FN+E +R + LS++ + N ++LN I++P +YV T +AG
Sbjct: 121 FNLERYSRSRQATDGSLASILSNLPHQENYSWLN----PIQSPNTTVVYVTFTSIAGLTG 176
Query: 614 XXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVH 793
RRSYFEVFWYTHH+F+I+FIGL IHG IV QT +S+ +
Sbjct: 177 VIITVALVLMVTSAMEFIRRSYFEVFWYTHHIFIIYFIGLGIHGLGGIVWGQTEESMAEN 236
Query: 794 ESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
CA+ +W C P+F G P +WKWI P LY+ ER+
Sbjct: 237 HPHKCAEFFDKWDDPASYCKPPQFEGLPAESWKWILAPGILYIFERI 283
Score = 28.5 bits (62), Expect(2) = 1e-62
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
++RF +S QK VITKVV+ P K
Sbjct: 283 ILRFYRSQQKVVITKVVMHPSK 304
>ref|XP_002699861.1| PREDICTED: NADPH oxidase 1 isoform 2 [Bos taurus].
Length = 512
Score = 230 bits (587), Expect(2) = 1e-62
Identities = 123/287 (42%), Positives = 164/287 (57%), Gaps = 2/287 (0%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ ++ WLGLNVFLFVH +L ++ + +Y YTR+
Sbjct: 1 MGNWVVNHWFSVLFLVAWLGLNVFLFVHAFLSFEKATKYYYTRQILGSALAWARASARCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN MLILLP+CRNLLSFLRG+ + + +R+QLD NL FHK+V +MI LHT IH IAHL
Sbjct: 61 NFNRMLILLPMCRNLLSFLRGTCSFYRSTLRKQLDHNLAFHKLVGYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGG-LYVAVTRLAGXXX 613
FN+E +R + LS++ + N ++LN I++P +YV T +AG
Sbjct: 121 FNLERYSRSRQATDGSLASILSNLPHQENYSWLN----PIQSPNTTVVYVTFTSIAGLTG 176
Query: 614 XXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVH 793
RRSYFEVFWYTHH+F+I+FIGL IHG IV QT +S+ +
Sbjct: 177 VIITVALVLMVTSAMEFIRRSYFEVFWYTHHIFIIYFIGLGIHGLGGIVWGQTEESMAEN 236
Query: 794 ESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
CA+ +W C P+F G P +WKWI P LY+ ER+
Sbjct: 237 HPHKCAEFFDKWDDPASYCKPPQFEGLPAESWKWILAPGILYIFERI 283
Score = 28.5 bits (62), Expect(2) = 1e-62
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
++RF +S QK VITKVV+ P K
Sbjct: 283 ILRFYRSQQKVVITKVVMHPSK 304
>ref|XP_001789635.1| PREDICTED: NADPH oxidase 1 isoform 2 [Bos taurus].
Length = 512
Score = 230 bits (587), Expect(2) = 1e-62
Identities = 123/287 (42%), Positives = 164/287 (57%), Gaps = 2/287 (0%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ ++ WLGLNVFLFVH +L ++ + +Y YTR+
Sbjct: 1 MGNWVVNHWFSVLFLVAWLGLNVFLFVHAFLSFEKATKYYYTRQILGSALAWARASARCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN MLILLP+CRNLLSFLRG+ + + +R+QLD NL FHK+V +MI LHT IH IAHL
Sbjct: 61 NFNRMLILLPMCRNLLSFLRGTCSFYRSTLRKQLDHNLAFHKLVGYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGG-LYVAVTRLAGXXX 613
FN+E +R + LS++ + N ++LN I++P +YV T +AG
Sbjct: 121 FNLERYSRSRQATDGSLASILSNLPHQENYSWLN----PIQSPNTTVVYVTFTSIAGLTG 176
Query: 614 XXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVH 793
RRSYFEVFWYTHH+F+I+FIGL IHG IV QT +S+ +
Sbjct: 177 VIITVALVLMVTSAMEFIRRSYFEVFWYTHHIFIIYFIGLGIHGLGGIVWGQTEESMAEN 236
Query: 794 ESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
CA+ +W C P+F G P +WKWI P LY+ ER+
Sbjct: 237 HPHKCAEFFDKWDDPASYCKPPQFEGLPAESWKWILAPGILYIFERI 283
Score = 28.5 bits (62), Expect(2) = 1e-62
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
++RF +S QK VITKVV+ P K
Sbjct: 283 ILRFYRSQQKVVITKVVMHPSK 304
>ref|XP_002699078.1| PREDICTED: NADPH oxidase 4 [Bos taurus].
Length = 578
Score = 140 bits (352), Expect = 2e-33
Identities = 97/312 (31%), Positives = 136/312 (43%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ +L+WL LNV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLLIWLSLNVLLFWKTFLLYNQGPEYHYLHEMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR LL+FLRGS S R RR LD++ TFH I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTLLAFLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN + + LN R R ++P L+ V L G
Sbjct: 127 ---ALNFSVNYREDF-------------VELNAARYREEDPRKLLFTTVPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQT---------- 772
R S +++FWYTH+LF +F++ L +H + +++ QT
Sbjct: 168 VLVLFLMFTASTYAIRVSNYDIFWYTHNLFFVFYMLLMLHVSGGLLKYQTNLDTHPPGCI 227
Query: 773 ------------PKSLLVHESKAC------AQNISQWGKIKDC-PIPEFAGNPPMTWKWI 895
P+ L H ++ ++Q +K C P F N P TW WI
Sbjct: 228 NLNGTHYQNTHLPEHLSEHFHESFPGGFSKPDELTQNTFVKICMEEPRFQANFPQTWLWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|XP_614713.4| PREDICTED: NADPH oxidase 4 [Bos taurus].
Length = 578
Score = 140 bits (352), Expect = 2e-33
Identities = 97/312 (31%), Positives = 136/312 (43%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ +L+WL LNV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLLIWLSLNVLLFWKTFLLYNQGPEYHYLHEMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR LL+FLRGS S R RR LD++ TFH I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTLLAFLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN + + LN R R ++P L+ V L G
Sbjct: 127 ---ALNFSVNYREDF-------------VELNAARYREEDPRKLLFTTVPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQT---------- 772
R S +++FWYTH+LF +F++ L +H + +++ QT
Sbjct: 168 VLVLFLMFTASTYAIRVSNYDIFWYTHNLFFVFYMLLMLHVSGGLLKYQTNLDTHPPGCI 227
Query: 773 ------------PKSLLVHESKAC------AQNISQWGKIKDC-PIPEFAGNPPMTWKWI 895
P+ L H ++ ++Q +K C P F N P TW WI
Sbjct: 228 NLNGTHYQNTHLPEHLSEHFHESFPGGFSKPDELTQNTFVKICMEEPRFQANFPQTWLWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|XP_002690988.1| PREDICTED: dual oxidase 2-like [Bos taurus].
Length = 1545
Score = 51.2 bits (121), Expect = 1e-06
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 2/171 (1%)
Frame = +2
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQL--DRNLTFHKMVAWMIALHTTIHTIA 430
+F ILL +CRNL++FLR T + R + D + FH+ +A + +H+
Sbjct: 1088 SFMFSYILLTMCRNLITFLR------ETFLNRYVPFDAAVDFHRWIAMAAVVLAILHSAG 1141
Query: 431 HLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
H+ NV Y ++S + FV K P+ + + G
Sbjct: 1142 HVVNV-------------YIFSVSPLSLLACIFPSVFVNDGSKLPQKFYWWFFQTVPGMT 1188
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVR 763
RR F FW THHL+++ ++ L IHG+ +++
Sbjct: 1189 GVLLLLVLAIMYVFASHHFRRRSFRGFWLTHHLYILLYVLLIIHGSFALIQ 1239
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,631,704
Number of extensions: 1126983
Number of successful extensions: 3314
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3281
Number of HSP's successfully gapped: 16
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007415
(995 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093761.1| cytochrome b-245, beta polypeptide [Canis lu... 436 e-125
Alignment gi|NP_001095303.1| NADPH oxidase 3 [Canis lupus familiaris]. 256 3e-68
Alignment gi|XP_549136.2| PREDICTED: similar to NADPH oxidase homolog 1 (... 239 2e-65
Alignment gi|XP_542262.2| PREDICTED: similar to NADPH oxidase 4 [Canis fa... 110 2e-24
>ref|NP_001093761.1| cytochrome b-245, beta polypeptide [Canis lupus familiaris].
Length = 570
Score = 436 bits (1121), Expect(2) = e-125
Identities = 211/285 (74%), Positives = 224/285 (78%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW NEGLSIFVILVWLGLNVFLF+ +Y +Y+ +E+ YTRK
Sbjct: 1 MGNWIENEGLSIFVILVWLGLNVFLFIWFYGVYNNGEEFFYTRKLLGFALPLARAPAACL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHK+VAWMIALHT IHTIAHL
Sbjct: 61 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKLVAWMIALHTAIHTIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FNVEWCVNARVNNSD YSIALS++GD P E+YLNF R+RIKNPEGGLYVAVT LAG
Sbjct: 121 FNVEWCVNARVNNSDVYSIALSNLGDNPGESYLNFARRRIKNPEGGLYVAVTLLAGITGI 180
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
RRSYFEVFWYTHHLFVIFFIGLAIHGAERIVR QT S L H
Sbjct: 181 VITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRGQTAASRLEHN 240
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
K CA NISQWGKI DCPIP+F+GNPPMTWKWI GPMFLYLCERL
Sbjct: 241 YKVCADNISQWGKIPDCPIPQFSGNPPMTWKWIVGPMFLYLCERL 285
Score = 32.0 bits (71), Expect(2) = e-125
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
LVRF +S QK VITKVV PFK
Sbjct: 285 LVRFWRSQQKVVITKVVTHPFK 306
>ref|NP_001095303.1| NADPH oxidase 3 [Canis lupus familiaris].
Length = 567
Score = 256 bits (653), Expect = 3e-68
Identities = 129/298 (43%), Positives = 178/298 (59%), Gaps = 3/298 (1%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MG W +NE LS+ ++L WLG+N++LF+ + Y+ + ++YTR
Sbjct: 2 MGCWILNESLSVILVLSWLGVNLYLFIDTFCWYEEEESFLYTRVILGSTLAWARASAVCL 61
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLP+ RNL+SF+RG+S CC RRQLD+NL FHK+VA+ IA++ TIH +AHL
Sbjct: 62 NFNCMLILLPISRNLISFMRGTSTCCRGLWRRQLDKNLKFHKLVAYGIAVNATIHIVAHL 121
Query: 437 FNVE---WCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGX 607
N++ W +A V LS +G+ PNE+YLN +R N L +T +AG
Sbjct: 122 CNLQRYHWSQSAEVQG---LPATLSKLGNAPNESYLNPIRTFHTNTITEL---LTTIAGV 175
Query: 608 XXXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLL 787
R+ +E+FWYTHH+F+IFFIGLAIHGA RIVR QTP+S L
Sbjct: 176 TGLIISLALVLIMTSSTESIRQVSYELFWYTHHVFIIFFIGLAIHGAGRIVRGQTPESQL 235
Query: 788 VHESKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERLGAVFAISPEV 961
+H C + +QW K+ CP+P+F+G P WKW+ GP+ LY CER+ + EV
Sbjct: 236 LHNVTFCRDHHAQWQKMAQCPMPQFSGKEPSAWKWVLGPVVLYACERIIRFWRFQQEV 293
>ref|XP_549136.2| PREDICTED: similar to NADPH oxidase homolog 1 (NOX-1) (NOH-1)
(NADH/NADPH mitogenic oxidase subunit P65-MOX)
(Mitogenic oxidase 1) (MOX1) [Canis familiaris].
Length = 564
Score = 239 bits (611), Expect(2) = 2e-65
Identities = 130/288 (45%), Positives = 161/288 (55%), Gaps = 3/288 (1%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ + WLGLNVFLFVH +L Y+ + +Y YTR+
Sbjct: 1 MGNWVVNHWFSVLFLATWLGLNVFLFVHAFLSYEKADKYYYTREILGSTLAWARASARCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN MLILLPVCRNLLSFLRG+ + C +R+QLD NLTFHK+VA+MI LHT IH IAHL
Sbjct: 61 NFNSMLILLPVCRNLLSFLRGTCSFCRRTLRKQLDHNLTFHKLVAYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIG--DKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
FN E +R + LS + K +++LN ++ E YV T +AG
Sbjct: 121 FNFERYSRSRQATDGSLASILSTLSHQGKEEDSWLNPMQSPNMTVE---YVTFTSIAGLT 177
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLV 790
RRSYFEVFWYTHH+F+I+FIGL IHG IVR QT +SL
Sbjct: 178 GVIITIALVLMVTSAMEFIRRSYFEVFWYTHHIFIIYFIGLGIHGIGGIVRGQTEESLNE 237
Query: 791 HESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
CA++ QW C P F G P +WKWI P LY+ ER+
Sbjct: 238 SHPHRCAESFKQWDDHDSHCKHPRFEGLPAESWKWILAPGVLYILERI 285
Score = 28.5 bits (62), Expect(2) = 2e-65
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
++RF +S QK VITKVV+ P K
Sbjct: 285 ILRFYRSQQKVVITKVVMHPSK 306
>ref|XP_542262.2| PREDICTED: similar to NADPH oxidase 4 [Canis familiaris].
Length = 584
Score = 110 bits (276), Expect = 2e-24
Identities = 70/215 (32%), Positives = 101/215 (46%)
Frame = +2
Query: 125 VWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNFNCMLILLPVCRNLL 304
+WL LNV LF +LLY+ EY Y + N NC LILLP+CR LL
Sbjct: 25 IWLSLNVLLFWKAFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNLNCSLILLPMCRTLL 84
Query: 305 SFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFNVEWCVNARVNNSDP 484
++LRGS S R RR LD++ TFH I + + +H AHL N +N VN ++
Sbjct: 85 AYLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN---ALNFSVNYNED 141
Query: 485 YSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXXXXXXXXXXXXXXXX 664
+ T LN R R ++P L+ V L G
Sbjct: 142 F-------------TELNAARYRDEDPRKLLFTTVPGLTG---VGMVLVLFLMITASTYA 185
Query: 665 XRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQ 769
R S +++FWYTH+LF +F++ L +H + +++ Q
Sbjct: 186 IRVSNYDIFWYTHNLFFVFYMLLMLHVSGGLLKYQ 220
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,383,911
Number of extensions: 1161234
Number of successful extensions: 3112
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3099
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007415
(995 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000388.2| cytochrome b-245 heavy chain [Homo sapiens]. 443 e-127
Alignment gi|NP_008983.2| NADPH oxidase 1 isoform long [Homo sapiens]. 248 4e-68
Alignment gi|NP_039249.1| NADPH oxidase 1 isoform long variant [Homo sapi... 248 4e-68
Alignment gi|NP_056533.1| NADPH oxidase 3 [Homo sapiens]. 246 2e-65
Alignment gi|NP_001137308.1| NADPH oxidase 4 isoform b [Homo sapiens]. 140 2e-33
Alignment gi|NP_058627.1| NADPH oxidase 4 isoform a [Homo sapiens]. 140 2e-33
Alignment gi|NP_001137309.1| NADPH oxidase 4 isoform c [Homo sapiens]. 123 3e-28
Alignment gi|NP_054799.4| dual oxidase 2 precursor [Homo sapiens]. 52 8e-07
>ref|NP_000388.2| cytochrome b-245 heavy chain [Homo sapiens].
Length = 570
Score = 443 bits (1139), Expect(2) = e-127
Identities = 212/285 (74%), Positives = 228/285 (80%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNWAVNEGLSIFVILVWLGLNVFLFV YY +YD ++ YTRK
Sbjct: 1 MGNWAVNEGLSIFVILVWLGLNVFLFVWYYRVYDIPPKFFYTRKLLGSALALARAPAACL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLPVCRNLLSFLRGSSACCSTR+RRQLDRNLTFHKMVAWMIALH+ IHTIAHL
Sbjct: 61 NFNCMLILLPVCRNLLSFLRGSSACCSTRVRRQLDRNLTFHKMVAWMIALHSAIHTIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FNVEWCVNARVNNSDPYS+ALS++GD+ NE+YLNF R+RIKNPEGGLY+AVT LAG
Sbjct: 121 FNVEWCVNARVNNSDPYSVALSELGDRQNESYLNFARKRIKNPEGGLYLAVTLLAGITGV 180
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
RRSYFEVFWYTHHLFVIFFIGLAIHGAERIVR QT +SL VH
Sbjct: 181 VITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRGQTAESLAVHN 240
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
C Q IS+WGKIK+CPIP+FAGNPPMTWKWI GPMFLYLCERL
Sbjct: 241 ITVCEQKISEWGKIKECPIPQFAGNPPMTWKWIVGPMFLYLCERL 285
Score = 32.0 bits (71), Expect(2) = e-127
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
LVRF +S QK VITKVV PFK
Sbjct: 285 LVRFWRSQQKVVITKVVTHPFK 306
>ref|NP_008983.2| NADPH oxidase 1 isoform long [Homo sapiens].
Length = 564
Score = 248 bits (634), Expect(2) = 4e-68
Identities = 129/288 (44%), Positives = 167/288 (57%), Gaps = 3/288 (1%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ ++VWLGLNVFLFV +L Y+ + +Y YTRK
Sbjct: 1 MGNWVVNHWFSVLFLVVWLGLNVFLFVDAFLKYEKADKYYYTRKILGSTLACARASALCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN LILLPVCRNLLSFLRG+ + CS +R+QLD NLTFHK+VA+MI LHT IH IAHL
Sbjct: 61 NFNSTLILLPVCRNLLSFLRGTCSFCSRTLRKQLDHNLTFHKLVAYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIG--DKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
FN + +R + LS + +K ++LN ++ R E YV T +AG
Sbjct: 121 FNFDCYSRSRQATDGSLASILSSLSHDEKKGGSWLNPIQSRNTTVE---YVTFTSIAGLT 177
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLV 790
RRSYFEVFWYTHHLF+ + +GL IHG IVR QT +S+
Sbjct: 178 GVIMTIALILMVTSATEFIRRSYFEVFWYTHHLFIFYILGLGIHGIGGIVRGQTEESMNE 237
Query: 791 HESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
+ CA++ W + C P+F G+PP +WKWI P+ LY+CER+
Sbjct: 238 SHPRKCAESFEMWDDRDSHCRRPKFEGHPPESWKWILAPVILYICERI 285
Score = 28.9 bits (63), Expect(2) = 4e-68
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 915 ICVKGLVRFLQSHQKWVITKVVLSPFK 995
IC + ++RF +S QK VITKVV+ P K
Sbjct: 281 ICER-ILRFYRSQQKVVITKVVMHPSK 306
>ref|NP_039249.1| NADPH oxidase 1 isoform long variant [Homo sapiens].
Length = 515
Score = 248 bits (634), Expect(2) = 4e-68
Identities = 129/288 (44%), Positives = 167/288 (57%), Gaps = 3/288 (1%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN S+ ++VWLGLNVFLFV +L Y+ + +Y YTRK
Sbjct: 1 MGNWVVNHWFSVLFLVVWLGLNVFLFVDAFLKYEKADKYYYTRKILGSTLACARASALCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN LILLPVCRNLLSFLRG+ + CS +R+QLD NLTFHK+VA+MI LHT IH IAHL
Sbjct: 61 NFNSTLILLPVCRNLLSFLRGTCSFCSRTLRKQLDHNLTFHKLVAYMICLHTAIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIG--DKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
FN + +R + LS + +K ++LN ++ R E YV T +AG
Sbjct: 121 FNFDCYSRSRQATDGSLASILSSLSHDEKKGGSWLNPIQSRNTTVE---YVTFTSIAGLT 177
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLV 790
RRSYFEVFWYTHHLF+ + +GL IHG IVR QT +S+
Sbjct: 178 GVIMTIALILMVTSATEFIRRSYFEVFWYTHHLFIFYILGLGIHGIGGIVRGQTEESMNE 237
Query: 791 HESKACAQNISQW-GKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
+ CA++ W + C P+F G+PP +WKWI P+ LY+CER+
Sbjct: 238 SHPRKCAESFEMWDDRDSHCRRPKFEGHPPESWKWILAPVILYICERI 285
Score = 28.9 bits (63), Expect(2) = 4e-68
Identities = 15/27 (55%), Positives = 20/27 (74%)
Frame = +3
Query: 915 ICVKGLVRFLQSHQKWVITKVVLSPFK 995
IC + ++RF +S QK VITKVV+ P K
Sbjct: 281 ICER-ILRFYRSQQKVVITKVVMHPSK 306
>ref|NP_056533.1| NADPH oxidase 3 [Homo sapiens].
Length = 568
Score = 246 bits (629), Expect = 2e-65
Identities = 123/295 (41%), Positives = 170/295 (57%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MG W +NEGLS ++L WLG+N +LF+ + Y+ + + YTR
Sbjct: 2 MGCWILNEGLSTILVLSWLGINFYLFIDTFYWYEEEESFHYTRVILGSTLAWARASALCL 61
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLIL+PV RNL+SF+RG+S CC RRQLD+NL FHK+VA+ IA++ TIH +AH
Sbjct: 62 NFNCMLILIPVSRNLISFIRGTSICCRGPWRRQLDKNLRFHKLVAYGIAVNATIHIVAHF 121
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FN+E ++ + ALS +G+ PNE+YLN VR N L + +AG
Sbjct: 122 FNLERYHWSQSEEAQGLLAALSKLGNTPNESYLNPVRTFPTNTTTEL---LRTIAGVTGL 178
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
R++ +E+FWYTHH+F++FF+ LAIHG RIVR QT SL +H
Sbjct: 179 VISLALVLIMTSSTEFIRQASYELFWYTHHVFIVFFLSLAIHGTGRIVRGQTQDSLSLHN 238
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERLGAVFAISPEV 961
C ++W + CP+P+F+G P WKWI GP+ LY CER+ + EV
Sbjct: 239 ITFCRDRYAEWQTVAQCPVPQFSGKEPSAWKWILGPVVLYACERIIRFWRFQQEV 293
>ref|NP_001137308.1| NADPH oxidase 4 isoform b [Homo sapiens].
Length = 538
Score = 140 bits (353), Expect = 2e-33
Identities = 96/312 (30%), Positives = 136/312 (43%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ + +WL +NV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR LL++LRGS S R RR LD++ TFH I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTLLAYLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN S+ + LN R R ++P L+ V L G
Sbjct: 127 ---ALNFSVNYSEDF-------------VELNAARYRDEDPRKLLFTTVPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSL----LV 790
R S +++FWYTH+LF +F++ L +H + +++ QT +
Sbjct: 168 VVVLFLMITASTYAIRVSNYDIFWYTHNLFFVFYMLLTLHVSGGLLKYQTNLDTHPPGCI 227
Query: 791 HESKACAQNIS------------------------QWGKIKDC-PIPEFAGNPPMTWKWI 895
++ +QNIS Q +K C P F N P TW WI
Sbjct: 228 SLNRTSSQNISLPEYFSEHFHEPFPEGFSKPAEFTQHKFVKICMEEPRFQANFPQTWLWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|NP_058627.1| NADPH oxidase 4 isoform a [Homo sapiens].
Length = 578
Score = 140 bits (353), Expect = 2e-33
Identities = 96/312 (30%), Positives = 136/312 (43%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ + +WL +NV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR LL++LRGS S R RR LD++ TFH I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTLLAYLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN S+ + LN R R ++P L+ V L G
Sbjct: 127 ---ALNFSVNYSEDF-------------VELNAARYRDEDPRKLLFTTVPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSL----LV 790
R S +++FWYTH+LF +F++ L +H + +++ QT +
Sbjct: 168 VVVLFLMITASTYAIRVSNYDIFWYTHNLFFVFYMLLTLHVSGGLLKYQTNLDTHPPGCI 227
Query: 791 HESKACAQNIS------------------------QWGKIKDC-PIPEFAGNPPMTWKWI 895
++ +QNIS Q +K C P F N P TW WI
Sbjct: 228 SLNRTSSQNISLPEYFSEHFHEPFPEGFSKPAEFTQHKFVKICMEEPRFQANFPQTWLWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|NP_001137309.1| NADPH oxidase 4 isoform c [Homo sapiens].
Length = 554
Score = 123 bits (308), Expect = 3e-28
Identities = 90/294 (30%), Positives = 126/294 (42%), Gaps = 29/294 (9%)
Frame = +2
Query: 137 LNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNFNCMLILLPVCRNLLSFLR 316
+NV LF +LLY+ EY Y + N NC LILLP+CR LL++LR
Sbjct: 1 MNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNLNCSLILLPMCRTLLAYLR 60
Query: 317 GSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFNVEWCVNARVNNSDPYSIA 496
GS S R RR LD++ TFH I + + +H AHL N +N VN S+ +
Sbjct: 61 GSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN---ALNFSVNYSEDF--- 114
Query: 497 LSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXXXXXXXXXXXXXXXXXRRS 676
LN R R ++P L+ V L G R S
Sbjct: 115 ----------VELNAARYRDEDPRKLLFTTVPGLTG---VCMVVVLFLMITASTYAIRVS 161
Query: 677 YFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSL----LVHESKACAQNIS------- 823
+++FWYTH+LF +F++ L +H + +++ QT + ++ +QNIS
Sbjct: 162 NYDIFWYTHNLFFVFYMLLTLHVSGGLLKYQTNLDTHPPGCISLNRTSSQNISLPEYFSE 221
Query: 824 -----------------QWGKIKDC-PIPEFAGNPPMTWKWIGGPMFLYLCERL 931
Q +K C P F N P TW WI GP+ LY ERL
Sbjct: 222 HFHEPFPEGFSKPAEFTQHKFVKICMEEPRFQANFPQTWLWISGPLCLYCAERL 275
>ref|NP_054799.4| dual oxidase 2 precursor [Homo sapiens].
Length = 1548
Score = 52.0 bits (123), Expect = 8e-07
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 2/174 (1%)
Frame = +2
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQL--DRNLTFHKMVAWMIALHTTIHTIA 430
+F ILL +CRNL++FLR T + R + D + FH+ +A + +H+
Sbjct: 1091 SFMFSYILLTMCRNLITFLR------ETFLNRYVPFDAAVDFHRWIAMAAVVLAILHSAG 1144
Query: 431 HLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
H VN + + P S+ PN FV K P+ + + G
Sbjct: 1145 H------AVNVYIFSVSPLSLLACIF---PNV----FVNDGSKLPQKFYWWFFQTVPGMT 1191
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQT 772
RR F FW THHL+++ + L IHG+ +++ T
Sbjct: 1192 GVLLLLVLAIMYVFASHHFRRRSFRGFWLTHHLYILLYALLIIHGSYALIQLPT 1245
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,735,826
Number of extensions: 1150061
Number of successful extensions: 3307
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3279
Number of HSP's successfully gapped: 11
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007415
(995 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_031833.3| cytochrome b-245 heavy chain [Mus musculus]. 436 e-125
Alignment gi|NP_945196.1| NADPH oxidase 3 [Mus musculus]. 238 1e-64
Alignment gi|NP_757340.1| NADPH oxidase 1 [Mus musculus]. 224 6e-59
Alignment gi|NP_056575.1| NADPH oxidase 4 [Mus musculus]. 134 1e-31
Alignment gi|NP_808278.2| dual oxidase 2 [Mus musculus]. 52 5e-07
>ref|NP_031833.3| cytochrome b-245 heavy chain [Mus musculus].
Length = 570
Score = 436 bits (1120), Expect(2) = e-125
Identities = 212/285 (74%), Positives = 223/285 (78%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNWAVNEGLSIFVILVWLGLNVFLF++YY +YD +Y YTRK
Sbjct: 1 MGNWAVNEGLSIFVILVWLGLNVFLFINYYKVYDDGPKYNYTRKLLGSALALARAPAACL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHT IHTIAHL
Sbjct: 61 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTAIHTIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXX 616
FNVEWCVNARV SD YSIALSDIGD NE YLNF R++IKNPEGGLYVAVTRLAG
Sbjct: 121 FNVEWCVNARVGISDRYSIALSDIGDNENEEYLNFAREKIKNPEGGLYVAVTRLAGITGI 180
Query: 617 XXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHE 796
RRSYFEVFWYTHHLFVIFFIGLAIHGAERIVR QT +SL H
Sbjct: 181 VITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRGQTAESLEEHN 240
Query: 797 SKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
CA I +WGKIK+CP+P+FAGNPPMTWKWI GPMFLYLCERL
Sbjct: 241 LDICADKIEEWGKIKECPVPKFAGNPPMTWKWIVGPMFLYLCERL 285
Score = 32.0 bits (71), Expect(2) = e-125
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
LVRF +S QK VITKVV PFK
Sbjct: 285 LVRFWRSQQKVVITKVVTHPFK 306
>ref|NP_945196.1| NADPH oxidase 3 [Mus musculus].
Length = 588
Score = 238 bits (606), Expect(2) = 1e-64
Identities = 119/282 (42%), Positives = 161/282 (57%)
Frame = +2
Query: 86 WAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNFN 265
W +NE S V L+WL +N +LF+ + Y + + YTR NFN
Sbjct: 25 WILNESGSFVVALLWLAVNAYLFIDTFFWYTEEEAFFYTRVILGSALAWARASAVCLNFN 84
Query: 266 CMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFNV 445
CMLILLPV RN +S +RG+S CC RRQLD+NL FHK+VA+ IA+++ IH +AHLFN+
Sbjct: 85 CMLILLPVSRNFISLVRGTSVCCRGPWRRQLDKNLNFHKLVAYGIAVNSVIHIVAHLFNL 144
Query: 446 EWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXXX 625
E + +++ ALS +GD PNE+YLN VR L + V+ + G
Sbjct: 145 ERYHLGQAKDAEGLLAALSKLGDAPNESYLNPVRTFDMGTTTELLMTVSGITGLGISLAL 204
Query: 626 XXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLVHESKA 805
RRS +E+FWYTHH+FV FFI LAIHG RI+R QTP+SL +H
Sbjct: 205 VFIMTSSTEFI---RRSSYELFWYTHHIFVFFFISLAIHGGGRIIRGQTPESLRLHNVTY 261
Query: 806 CAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
C + ++W CP+P+F+G P WKW GP+ LY CER+
Sbjct: 262 CRDHYAEWQAAALCPVPQFSGKEPSAWKWALGPVVLYACERI 303
Score = 27.7 bits (60), Expect(2) = 1e-64
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSP 989
++RF +SHQ+ VITKVV P
Sbjct: 303 IIRFWRSHQEVVITKVVSHP 322
>ref|NP_757340.1| NADPH oxidase 1 [Mus musculus].
Length = 563
Score = 224 bits (572), Expect = 6e-59
Identities = 121/288 (42%), Positives = 164/288 (56%), Gaps = 3/288 (1%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MGNW VN LS+ ++ WLGLN+FLFV+ +L Y+ S +Y YTR+
Sbjct: 1 MGNWLVNHWLSVLFLVSWLGLNIFLFVYAFLNYEKSDKYYYTREILGTALALARASALCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHL 436
NFN M+IL+PVCRNLLSFLRG+ + C+ +R+ LD NLTFHK+VA+MI + T IH IAHL
Sbjct: 61 NFNSMMILIPVCRNLLSFLRGTCSFCNRTLRKPLDHNLTFHKLVAYMICIFTVIHIIAHL 120
Query: 437 FNVEWCVNARVNNSDPYSIALSDIGDKPNE-TYLNFVRQRIKNPE-GGLYVAVTRLAGXX 610
FN E ++ + LS + E ++LN I++P +Y A T +AG
Sbjct: 121 FNFERYRRSQQAMDGSLASVLSSLSHPEKEDSWLN----PIQSPNMTVMYAAFTSIAGLT 176
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQTPKSLLV 790
RR+YFE+FWYTHHLF+++ I L IHG IVR QT +SL
Sbjct: 177 GVIATVALVLMVTSAMEFIRRNYFELFWYTHHLFIVYIICLGIHGLGGIVRGQTEESLGE 236
Query: 791 HESKACAQNISQWGKIK-DCPIPEFAGNPPMTWKWIGGPMFLYLCERL 931
C+ + +W K C P FAG+PP +WKWI P+ Y+ ER+
Sbjct: 237 SHPHNCSHSFHEWDDHKGSCRHPHFAGHPPESWKWILAPIAFYIFERI 284
>ref|NP_056575.1| NADPH oxidase 4 [Mus musculus].
Length = 578
Score = 134 bits (337), Expect = 1e-31
Identities = 90/312 (28%), Positives = 139/312 (44%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ +L+WL LNV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLLIWLSLNVLLFWKTFLLYNQGPEYYYIHQMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR +L++LRGS S R RR LD++ T H I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTVLAYLRGSQKVPSRRTRRLLDKSKTLHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN S+ + LN R + ++P L+ + L G
Sbjct: 127 ---ALNFSVNYSEDF-------------LELNAARYQNEDPRKLLFTTIPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQT------PKSL 784
R S +++FWYTH+LF +F++ L +H + +++ QT P +
Sbjct: 168 VVVLFLMVTASTYAIRVSNYDIFWYTHNLFFVFYMLLLLHVSGGLLKYQTNVDTHPPGCI 227
Query: 785 LVHESKACAQNISQW-------------GKIKD----------CPIPEFAGNPPMTWKWI 895
++++ + +I + K++D P+F + P TW WI
Sbjct: 228 SLNQTSSQNMSIPDYVSEHFHGSLPRGFSKLEDRYQKTLVKICLEEPKFQAHFPQTWIWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|NP_808278.2| dual oxidase 2 [Mus musculus].
Length = 1517
Score = 52.4 bits (124), Expect = 5e-07
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 2/171 (1%)
Frame = +2
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQL--DRNLTFHKMVAWMIALHTTIHTIA 430
+F ILL +CRNL++FLR T + R + D + FH+ +A + +H+
Sbjct: 1060 SFMFSYILLTMCRNLITFLR------ETFLNRYIPFDAAVDFHRWIAMAAVVLAVLHSAG 1113
Query: 431 HLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
H VN + + P S+ PN FV K P + + G
Sbjct: 1114 H------AVNVYIFSVSPLSLMACVF---PNV----FVNDGSKFPPKYYWWFFETVPGMT 1160
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVR 763
RR F FW THHL+V+ ++ + IHG+ +++
Sbjct: 1161 GVLLLLVLAIMYVFASHHFRRHSFRGFWLTHHLYVVLYVLIIIHGSYALIQ 1211
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,640,265
Number of extensions: 969663
Number of successful extensions: 2841
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2825
Number of HSP's successfully gapped: 8
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007415
(995 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999208.1| cytochrome b-245 heavy chain [Sus scrofa]. 330 1e-93
Alignment gi|XP_003129793.2| PREDICTED: NADPH oxidase 4 isoform 1 [Sus sc... 139 2e-33
Alignment gi|XP_003357282.1| PREDICTED: NADPH oxidase 4 isoform 2 [Sus sc... 139 2e-33
Alignment gi|XP_003121177.2| PREDICTED: NADPH oxidase 3 [Sus scrofa]. 112 4e-25
Alignment gi|NP_999164.2| dual oxidase 2 precursor [Sus scrofa]. 50 3e-06
>ref|NP_999208.1| cytochrome b-245 heavy chain [Sus scrofa].
Length = 468
Score = 330 bits (845), Expect(2) = 1e-93
Identities = 158/183 (86%), Positives = 159/183 (86%)
Frame = +2
Query: 383 MVAWMIALHTTIHTIAHLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKN 562
MVAWMIALH TIHTIAHLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKN
Sbjct: 1 MVAWMIALHATIHTIAHLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKN 60
Query: 563 PEGGLYVAVTRLAGXXXXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIH 742
PEGGLYVAVTRLAG RRSYFEVFWYTHHLFVIFFIGLAIH
Sbjct: 61 PEGGLYVAVTRLAGITGVVITLCLILIITSSTKTIRRSYFEVFWYTHHLFVIFFIGLAIH 120
Query: 743 GAERIVRRQTPKSLLVHESKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIGGPMFLYLC 922
GAERIVRRQTPKSLLVH+ KACAQNISQWGKIKDCPIPEFAGNPPMTWKWI GPMFLYLC
Sbjct: 121 GAERIVRRQTPKSLLVHDPKACAQNISQWGKIKDCPIPEFAGNPPMTWKWIVGPMFLYLC 180
Query: 923 ERL 931
ERL
Sbjct: 181 ERL 183
Score = 32.0 bits (71), Expect(2) = 1e-93
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +3
Query: 930 LVRFLQSHQKWVITKVVLSPFK 995
LVRF +S QK VITKVV PFK
Sbjct: 183 LVRFWRSQQKVVITKVVTHPFK 204
>ref|XP_003129793.2| PREDICTED: NADPH oxidase 4 isoform 1 [Sus scrofa].
Length = 538
Score = 139 bits (351), Expect = 2e-33
Identities = 98/312 (31%), Positives = 137/312 (43%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ +L+WL LNV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLLIWLSLNVLLFWKTFLLYNRGPEYHYLHQMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR LL++LRGS S R RR LD++ TFH I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTLLAYLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN + + LN R R ++P L+ V L G
Sbjct: 127 ---ALNFSVNYREDF-------------VELNAARYRDEDPRKLLFTTVPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQT-----PKSLL 787
R S +++FWYTH+LF +F++ L +H + +++ QT P +
Sbjct: 168 VLVLFLMITASTYAIRVSNYDIFWYTHNLFFVFYMLLMLHVSGGLLKYQTNLDTHPPGCI 227
Query: 788 -------------------VHESK----ACAQNISQWGKIKDC-PIPEFAGNPPMTWKWI 895
VHES + ++Q +K C P F N P TW WI
Sbjct: 228 NLNGTHYQDVHLAEYLPEHVHESVPGGFSEPDELTQRTFVKICMEEPRFQANFPQTWLWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|XP_003357282.1| PREDICTED: NADPH oxidase 4 isoform 2 [Sus scrofa].
Length = 578
Score = 139 bits (351), Expect = 2e-33
Identities = 98/312 (31%), Positives = 137/312 (43%), Gaps = 29/312 (9%)
Frame = +2
Query: 83 NWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXXNF 262
+W NEG+ +L+WL LNV LF +LLY+ EY Y + N
Sbjct: 7 SWLANEGVKHLCLLIWLSLNVLLFWKTFLLYNRGPEYHYLHQMLGLGLCLSRASASVLNL 66
Query: 263 NCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALHTTIHTIAHLFN 442
NC LILLP+CR LL++LRGS S R RR LD++ TFH I + + +H AHL N
Sbjct: 67 NCSLILLPMCRTLLAYLRGSQKVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVN 126
Query: 443 VEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXXXXXX 622
+N VN + + LN R R ++P L+ V L G
Sbjct: 127 ---ALNFSVNYREDF-------------VELNAARYRDEDPRKLLFTTVPGLTG---VCM 167
Query: 623 XXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVRRQT-----PKSLL 787
R S +++FWYTH+LF +F++ L +H + +++ QT P +
Sbjct: 168 VLVLFLMITASTYAIRVSNYDIFWYTHNLFFVFYMLLMLHVSGGLLKYQTNLDTHPPGCI 227
Query: 788 -------------------VHESK----ACAQNISQWGKIKDC-PIPEFAGNPPMTWKWI 895
VHES + ++Q +K C P F N P TW WI
Sbjct: 228 NLNGTHYQDVHLAEYLPEHVHESVPGGFSEPDELTQRTFVKICMEEPRFQANFPQTWLWI 287
Query: 896 GGPMFLYLCERL 931
GP+ LY ERL
Sbjct: 288 SGPLCLYCAERL 299
>ref|XP_003121177.2| PREDICTED: NADPH oxidase 3 [Sus scrofa].
Length = 461
Score = 112 bits (279), Expect = 4e-25
Identities = 51/111 (45%), Positives = 72/111 (64%)
Frame = +2
Query: 77 MGNWAVNEGLSIFVILVWLGLNVFLFVHYYLLYDTSKEYIYTRKXXXXXXXXXXXXXXXX 256
MG+W +NE LSI +L WLG+N++LF+ + Y+ + ++YTR
Sbjct: 1 MGSWILNESLSIIFVLAWLGVNLYLFIDTFCWYEDEESFLYTRVILGSALAWARASAVCL 60
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQLDRNLTFHKMVAWMIALH 409
NFNCMLILLP+ RN +SF+RG+S C RRQLD+NL FHK+VA+ IA++
Sbjct: 61 NFNCMLILLPISRNFISFMRGTSTCFRGPWRRQLDKNLKFHKLVAYGIAIN 111
>ref|NP_999164.2| dual oxidase 2 precursor [Sus scrofa].
Length = 1545
Score = 49.7 bits (117), Expect = 3e-06
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 2/171 (1%)
Frame = +2
Query: 257 NFNCMLILLPVCRNLLSFLRGSSACCSTRIRRQL--DRNLTFHKMVAWMIALHTTIHTIA 430
+F ILL +CRNL++FLR T + + D + FH+ +A + +H++
Sbjct: 1088 SFMFSYILLTMCRNLITFLR------ETFLNHYVPFDAAVDFHRWIAMAALVLAILHSVG 1141
Query: 431 HLFNVEWCVNARVNNSDPYSIALSDIGDKPNETYLNFVRQRIKNPEGGLYVAVTRLAGXX 610
H+ NV Y ++S + FV K P+ + + G
Sbjct: 1142 HVVNV-------------YIFSVSPLSLLACVFPSVFVNDGSKLPQKFYWWFFQTIPGMT 1188
Query: 611 XXXXXXXXXXXXXXXXXXXRRSYFEVFWYTHHLFVIFFIGLAIHGAERIVR 763
RR F FW THH +++ ++ L IHG+ +++
Sbjct: 1189 GVLLLVVLAIMYVFASPYFRRRSFRGFWLTHHFYILLYVLLIIHGSFALIQ 1239
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,500,085
Number of extensions: 723708
Number of successful extensions: 2055
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2046
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007415
(995 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 369 2e-99
>Sscrofa_ChrX
|| Length = 144288218
Score = 369 bits (186), Expect = 2e-99
Identities = 192/194 (98%)
Strand = Plus / Plus
Query: 558 agaatcctgaaggaggcctgtacgtggctgtgactcggctggcaggcatcacaggcgtcg 617
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 37373858 agaatcctgaaggaggcctctacgtggctgtgactcggctggcaggcatcacaggcgtcg 37373917
Query: 618 tcatcacgctgtgtctcatattaattatcacctcctccaccaagaccatccggaggtctt 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37373918 tcatcacgctgtgtctcatattaattatcacctcctccaccaagaccatccggaggtctt 37373977
Query: 678 acttcgaggtgttctggtacacacaccatctctttgtgatcttcttcattggcctcgcca 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 37373978 acttcgaggtgttctggtacacacaccatctctttgtgatcttcttcattggccttgcca 37374037
Query: 738 tccatggagccgag 751
||||||||||||||
Sbjct: 37374038 tccatggagccgag 37374051
Score = 281 bits (142), Expect = 4e-73
Identities = 145/146 (99%)
Strand = Plus / Plus
Query: 414 cgattcacaccattgcccatctgtttaatgtggaatggtgtgtgaacgcccgagtcaaca 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37370746 cgattcacaccattgcccatctgtttaatgtggaatggtgtgtgaacgcccgagtcaaca 37370805
Query: 474 attctgacccgtactcaatagcactctctgacataggagataagcctaatgaaacgtacc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 37370806 attctgacccgtactcaatagcactctctgacataggagataagcctaatgaaacatacc 37370865
Query: 534 tcaatttcgttcgacagagaatcaag 559
||||||||||||||||||||||||||
Sbjct: 37370866 tcaatttcgttcgacagagaatcaag 37370891
Score = 242 bits (122), Expect = 3e-61
Identities = 128/130 (98%)
Strand = Plus / Plus
Query: 751 gcgaattgtacgtaggcagaccccaaagagtttgttggtccacgaatcaaaggcatgtgc 810
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 37377757 gcgaattgtacgtaggcagaccccaaagagtttgttggtccacgatccaaaggcatgtgc 37377816
Query: 811 tcaaaacatctcacaatggggaaaaataaaggactgcccgatcccggagttcgcagggaa 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37377817 tcaaaacatctcacaatggggaaaaataaaggactgcccgatcccggagttcgcagggaa 37377876
Query: 871 ccctcctatg 880
||||||||||
Sbjct: 37377877 ccctcctatg 37377886
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 tgttttcatttcctcgtggaaagaagaagcatagcagagaagaaaggcagactcaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37303173 tgttttcatttcctcgtggaaagaagaagcatagcagagaagaaaggcagactcaaggca 37303232
Query: 61 ttcaacctctgccaccatggggaactgggctgtgaatgagggcctctccatctttgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37303233 ttcaacctctgccaccatggggaactgggctgtgaatgagggcctctccatctttgtcat 37303292
Query: 121 c 121
|
Sbjct: 37303293 c 37303293
Score = 240 bits (121), Expect = 1e-60
Identities = 121/121 (100%)
Strand = Plus / Plus
Query: 1 tgttttcatttcctcgtggaaagaagaagcatagcagagaagaaaggcagactcaaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37355173 tgttttcatttcctcgtggaaagaagaagcatagcagagaagaaaggcagactcaaggca 37355232
Query: 61 ttcaacctctgccaccatggggaactgggctgtgaatgagggcctctccatctttgtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37355233 ttcaacctctgccaccatggggaactgggctgtgaatgagggcctctccatctttgtcat 37355292
Query: 121 c 121
|
Sbjct: 37355293 c 37355293
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 217 gtctgcgctggcactggccagggcccctgccgcctgcctgaatttcaactgcatgctgat 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37359265 gtctgcgctggcactggccagggcccctgccgcctgcctgaatttcaactgcatgctgat 37359324
Query: 277 tctgctgccggtctgtcgaaacctgctctccttccttaggggttccagtgcg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37359325 tctgctgccggtctgtcgaaacctgctctccttccttaggggttccagtgcg 37359376
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 122 ctggtatggctggggttgaacgtcttcctctttgtccactattacctgctatatgatacg 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37357693 ctggtatggctggggttgaacgtcttcctctttgtccactattacctgctatatgatacg 37357752
Query: 182 tcaaaagagtacatttacactcgaaaacttcttggg 217
||||||||||||||||||||||||||||||||||||
Sbjct: 37357753 tcaaaagagtacatttacactcgaaaacttcttggg 37357788
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 328 gtgctgctcaacaagaattcgaagacagctggacaggaacctcacctttcataaaatggt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37367822 gtgctgctcaacaagaattcgaagacagctggacaggaacctcacctttcataaaatggt 37367881
Query: 388 ggcgtggatgattgcacttcacac 411
||||||||||||||||||||||||
Sbjct: 37367882 ggcgtggatgattgcacttcacac 37367905
Score = 121 bits (61), Expect = 8e-25
Identities = 89/97 (91%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 880 gacttggaaatggatcgggggtcccatgttcctgtatctgtgtgaaaggcttggtgcggt 939
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 37380271 gacttggaaatggatcgtgggtcccatgttcctgtatctgtgtgagaggc-tggtgcggt 37380329
Query: 940 ttttgcaatctcaccagaagtgggtcattaccaaggt 976
||| || |||||| |||||| |||||||||||||||
Sbjct: 37380330 tttggcgatctcagcagaaggtggtcattaccaaggt 37380366
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,381,095
Number of extensions: 152
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 9
Length of query: 995
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 974
Effective length of database: 2,808,413,156
Effective search space: 2735394413944
Effective search space used: 2735394413944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)