Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007416
(1066 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001788173.1| PREDICTED: SP110 nuclear body protein [Bos t... 298 4e-81
Alignment gi|XP_002685721.1| PREDICTED: nuclear antigen Sp100-like [Bos t... 119 3e-27
Alignment gi|XP_001789492.2| PREDICTED: nuclear antigen Sp100-like [Bos t... 119 3e-27
Alignment gi|NP_001124237.1| hypothetical protein LOC100139208 [Bos tauru... 119 5e-27
Alignment gi|NP_001068915.1| SP140 nuclear body protein [Bos taurus]. 103 3e-22
>ref|XP_001788173.1| PREDICTED: SP110 nuclear body protein [Bos taurus].
Length = 678
Score = 298 bits (764), Expect = 4e-81
Identities = 173/327 (52%), Positives = 200/327 (61%), Gaps = 21/327 (6%)
Frame = +3
Query: 132 MTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSR 311
MTR LE+AL QHFI QKLEIAYAINKPFPFFEGLRDN FIT+ LYRES+EAC NLVP+SR
Sbjct: 1 MTRALEKALLQHFIQQKLEIAYAINKPFPFFEGLRDNFFITERLYRESMEACENLVPLSR 60
Query: 312 VVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGWSRXXXXXXXX 491
VVYNILT+LEKTFSLSFL++LF INL EYP+L+ SF VVTSH GWSR
Sbjct: 61 VVYNILTQLEKTFSLSFLKILFSQINLNEYPNLITTLNSFTRVVTSHGGWSRITTTLLEA 120
Query: 492 XXXXXXRSSVRP-LLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKPPSPAGLAKT 668
RSS R LLP C+ AP Q S+E+L + PS GL T
Sbjct: 121 PANPAGRSSPRTLLLPRLPCR-QPLRSLPPCGPSVSERAPAQRSSEVLRELPSRTGLTMT 179
Query: 669 PPGIIQEGRLTPVSSDSLILQTEDKEDTPEVPCTPSGSAPAIKDDSPKPHDPEELQEAPR 848
IQ+GRL+PVSSDSL Q +DKEDT E+PCT S P +DD P+P DP+ELQEA R
Sbjct: 180 LRETIQKGRLSPVSSDSLTPQIKDKEDTQEMPCTSSDPVPVKRDDVPEPSDPKELQEASR 239
Query: 849 MPPHXXXXXXXRCIWGTPKRRHRK------KCLPREG--------------ALPDHGIQE 968
P RCIW T K+R +K K +EG ALP HGIQ+
Sbjct: 240 TLPSKKGKKRKRCIWATSKKRQQKNSHQGSKMRKQEGAGGQRQLIPVDQGAALPGHGIQK 299
Query: 969 KLXGVESETQREDDSPGNAEVMTTPPK 1049
L G++ T EDDS N +VMT K
Sbjct: 300 TLQGLDQVTHTEDDSIRNTKVMTRTQK 326
>ref|XP_002685721.1| PREDICTED: nuclear antigen Sp100-like [Bos taurus].
Length = 422
Score = 119 bits (299), Expect = 3e-27
Identities = 57/120 (47%), Positives = 80/120 (66%)
Frame = +3
Query: 84 GKGKEQMAVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTL 263
G+G+E + L E +F+HF K++I+ AI K FPFFEGL DN IT +
Sbjct: 3 GEGRELSTRMSLEDQNIDNRLFETVFRHFKRHKVQISNAIKKTFPFFEGLHDNELITSKM 62
Query: 264 YRESLEACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
Y + ++CRNLVPVSRVVYN+L++LEKTF+ S LE +F +N+ EYP L ++KSF+ V+
Sbjct: 63 YEDCQDSCRNLVPVSRVVYNVLSELEKTFNPSLLEAVFSEVNMQEYPDLNNIYKSFEKVI 122
>ref|XP_001789492.2| PREDICTED: nuclear antigen Sp100-like [Bos taurus].
Length = 422
Score = 119 bits (299), Expect = 3e-27
Identities = 57/120 (47%), Positives = 80/120 (66%)
Frame = +3
Query: 84 GKGKEQMAVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTL 263
G+G+E + L E +F+HF K++I+ AI K FPFFEGL DN IT +
Sbjct: 3 GEGRELSTRMSLEDQNIDNRLFETVFRHFKRHKVQISNAIKKTFPFFEGLHDNELITSKM 62
Query: 264 YRESLEACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
Y + ++CRNLVPVSRVVYN+L++LEKTF+ S LE +F +N+ EYP L ++KSF+ V+
Sbjct: 63 YEDCQDSCRNLVPVSRVVYNVLSELEKTFNPSLLEAVFSEVNMQEYPDLNNIYKSFEKVI 122
>ref|NP_001124237.1| hypothetical protein LOC100139208 [Bos taurus].
Length = 123
Score = 119 bits (298), Expect = 5e-27
Identities = 60/119 (50%), Positives = 81/119 (68%), Gaps = 1/119 (0%)
Frame = +3
Query: 84 GKGKE-QMAVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDT 260
G+G E +S + T R + E +F+HF K+EI+ AI K FPFFEGLRD IT+
Sbjct: 3 GEGSELSTRMSTENQNTEDRLVFETIFRHFKRHKVEISTAIKKTFPFFEGLRDRELITNK 62
Query: 261 LYRESLEACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKN 437
+Y + ++CRNLVPV +VVYN+L++LEKTF+ S LE LF +N+ EYP L V KSF+N
Sbjct: 63 MYEDCQDSCRNLVPVPKVVYNVLSELEKTFNQSLLEALFSDVNMQEYPDLNHVRKSFEN 121
>ref|NP_001068915.1| SP140 nuclear body protein [Bos taurus].
Length = 411
Score = 103 bits (257), Expect = 3e-22
Identities = 50/98 (51%), Positives = 66/98 (67%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
E +F F +K+EIA AI KPFPF GLRD FI++ +Y++ EACRNLVPV RV YN L
Sbjct: 31 EFIFMLFKEKKVEIAGAILKPFPFLMGLRDRGFISEPMYQDFQEACRNLVPVERVAYNAL 90
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
+LEK F + LE LF +NL YP L+ + +F+N +
Sbjct: 91 DELEKKFDKTVLEALFSKVNLKAYPDLLQICNNFQNAI 128
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 46,422,071
Number of extensions: 1481286
Number of successful extensions: 8649
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8447
Number of HSP's successfully gapped: 5
Length of query: 355
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 252
Effective length of database: 14,273,310
Effective search space: 3596874120
Effective search space used: 3596874120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007416
(1066 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534598.2| PREDICTED: similar to Nuclear autoantigen Sp-10... 122 8e-28
Alignment gi|XP_852450.1| PREDICTED: similar to SP140 nuclear body protei... 106 4e-23
>ref|XP_534598.2| PREDICTED: similar to Nuclear autoantigen Sp-100 (Speckled 100 kDa)
(Nuclear dot-associated Sp100 protein) (Lysp100b) [Canis
familiaris].
Length = 835
Score = 122 bits (305), Expect = 8e-28
Identities = 54/98 (55%), Positives = 74/98 (75%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
E LF+HF K+EI+ AI KPFPFFEGLRD IT+ +Y + E+CRNL+PV +VVYN+L
Sbjct: 66 ETLFKHFKRYKVEISSAIKKPFPFFEGLRDRELITNKMYEDCQESCRNLIPVQKVVYNVL 125
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
+LEKTF+L LE LF +N+ EYP L ++++F++VV
Sbjct: 126 NELEKTFNLPLLEALFSEVNVQEYPDLNGIYRNFEHVV 163
>ref|XP_852450.1| PREDICTED: similar to SP140 nuclear body protein isoform 1 [Canis
familiaris].
Length = 763
Score = 106 bits (264), Expect = 4e-23
Identities = 49/98 (50%), Positives = 70/98 (71%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
E +F+ F K+EIA AI KPFP GLRD FI + +++ EACRNLVPV RV+Y++L
Sbjct: 20 EFIFRLFKENKVEIASAIKKPFPLLMGLRDRGFIPEQMFQHFQEACRNLVPVERVIYDVL 79
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
++LEKTF + L+ LF ++NL YP L+ + +SF+NV+
Sbjct: 80 SELEKTFDKTVLDALFSNLNLKAYPDLLEICRSFQNVI 117
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 48,350,201
Number of extensions: 1518828
Number of successful extensions: 8790
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8542
Number of HSP's successfully gapped: 2
Length of query: 355
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 251
Effective length of database: 15,407,560
Effective search space: 3867297560
Effective search space used: 3867297560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007416
(1066 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171944.1| sp110 nuclear body protein isoform d [Homo s... 272 4e-73
Alignment gi|NP_004500.3| sp110 nuclear body protein isoform a [Homo sapi... 270 1e-72
Alignment gi|NP_004501.3| sp110 nuclear body protein isoform b [Homo sapi... 270 1e-72
Alignment gi|NP_536349.2| sp110 nuclear body protein isoform c [Homo sapi... 270 1e-72
Alignment gi|NP_612411.4| nuclear body protein SP140-like protein [Homo s... 124 2e-28
Alignment gi|NP_001193633.1| nuclear autoantigen Sp-100 isoform 6 [Homo s... 119 4e-27
Alignment gi|NP_001193632.1| nuclear autoantigen Sp-100 isoform 5 [Homo s... 119 4e-27
Alignment gi|NP_001193631.1| nuclear autoantigen Sp-100 isoform 4 [Homo s... 119 4e-27
Alignment gi|NP_001193630.1| nuclear autoantigen Sp-100 isoform 3 [Homo s... 119 4e-27
Alignment gi|NP_001073860.1| nuclear autoantigen Sp-100 isoform 1 [Homo s... 119 4e-27
>ref|NP_001171944.1| sp110 nuclear body protein isoform d [Homo sapiens].
Length = 555
Score = 272 bits (695), Expect = 4e-73
Identities = 157/338 (46%), Positives = 191/338 (56%), Gaps = 28/338 (8%)
Frame = +3
Query: 120 RRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLV 299
R TMTR +EEALFQHF+HQKL IAYAI+KPFPFFEGL DN+ IT +Y ESLEACRNL+
Sbjct: 6 RMFTMTRAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLI 65
Query: 300 PVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGWSRXXXX 479
PVSRVV+NILT+LE+TF+LS L LF INL EYP+L+ +++SFK V S+ SR
Sbjct: 66 PVSRVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRVGASYEWQSRDTPI 125
Query: 480 XXXXXXXXXXRSSVRPLLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKPPSPAGL 659
SS+ L LP Q Q S EIL + PSP+
Sbjct: 126 LLEAPTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDP 185
Query: 660 AKTPPGIIQEGRLT----------------------------PVSSDSLILQTEDKEDTP 755
P +IQEGR T V+SD+LI Q DKED
Sbjct: 186 VLPLPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKEDPQ 245
Query: 756 EVPCTPSGSAPAIKDDSPKPHDPEELQEAPRMPPHXXXXXXXRCIWGTPKRRHRKKCLPR 935
E+P +P GS P I+D+SP+P+DPEE QE P RCIW TPKRRH+KK LP
Sbjct: 246 EMPHSPLGSMPEIRDNSPEPNDPEEPQEVSSTPSDKKGKKRKRCIWSTPKRRHKKKSLPG 305
Query: 936 EGALPDHGIQEKLXGVESETQREDDSPGNAEVMTTPPK 1049
A HGIQ+KL V+ Q++DDS N+ V T K
Sbjct: 306 GTASSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQK 343
>ref|NP_004500.3| sp110 nuclear body protein isoform a [Homo sapiens].
Length = 689
Score = 270 bits (691), Expect = 1e-72
Identities = 156/335 (46%), Positives = 190/335 (56%), Gaps = 28/335 (8%)
Frame = +3
Query: 129 TMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVS 308
TMTR +EEALFQHF+HQKL IAYAI+KPFPFFEGL DN+ IT +Y ESLEACRNL+PVS
Sbjct: 3 TMTRAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVS 62
Query: 309 RVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGWSRXXXXXXX 488
RVV+NILT+LE+TF+LS L LF INL EYP+L+ +++SFK V S+ SR
Sbjct: 63 RVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRVGASYERQSRDTPILLE 122
Query: 489 XXXXXXXRSSVRPLLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKPPSPAGLAKT 668
SS+ L LP Q Q S EIL + PSP+
Sbjct: 123 APTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLP 182
Query: 669 PPGIIQEGRLT----------------------------PVSSDSLILQTEDKEDTPEVP 764
P +IQEGR T V+SD+LI Q DKED E+P
Sbjct: 183 LPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKEDPQEMP 242
Query: 765 CTPSGSAPAIKDDSPKPHDPEELQEAPRMPPHXXXXXXXRCIWGTPKRRHRKKCLPREGA 944
+P GS P I+D+SP+P+DPEE QE P RCIW TPKRRH+KK LP A
Sbjct: 243 HSPLGSMPEIRDNSPEPNDPEEPQEVSSTPSDKKGKKRKRCIWSTPKRRHKKKSLPGGTA 302
Query: 945 LPDHGIQEKLXGVESETQREDDSPGNAEVMTTPPK 1049
HGIQ+KL V+ Q++DDS N+ V T K
Sbjct: 303 SSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQK 337
>ref|NP_004501.3| sp110 nuclear body protein isoform b [Homo sapiens].
Length = 549
Score = 270 bits (691), Expect = 1e-72
Identities = 156/335 (46%), Positives = 190/335 (56%), Gaps = 28/335 (8%)
Frame = +3
Query: 129 TMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVS 308
TMTR +EEALFQHF+HQKL IAYAI+KPFPFFEGL DN+ IT +Y ESLEACRNL+PVS
Sbjct: 3 TMTRAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVS 62
Query: 309 RVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGWSRXXXXXXX 488
RVV+NILT+LE+TF+LS L LF INL EYP+L+ +++SFK V S+ SR
Sbjct: 63 RVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRVGASYERQSRDTPILLE 122
Query: 489 XXXXXXXRSSVRPLLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKPPSPAGLAKT 668
SS+ L LP Q Q S EIL + PSP+
Sbjct: 123 APTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLP 182
Query: 669 PPGIIQEGRLT----------------------------PVSSDSLILQTEDKEDTPEVP 764
P +IQEGR T V+SD+LI Q DKED E+P
Sbjct: 183 LPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKEDPQEMP 242
Query: 765 CTPSGSAPAIKDDSPKPHDPEELQEAPRMPPHXXXXXXXRCIWGTPKRRHRKKCLPREGA 944
+P GS P I+D+SP+P+DPEE QE P RCIW TPKRRH+KK LP A
Sbjct: 243 HSPLGSMPEIRDNSPEPNDPEEPQEVSSTPSDKKGKKRKRCIWSTPKRRHKKKSLPGGTA 302
Query: 945 LPDHGIQEKLXGVESETQREDDSPGNAEVMTTPPK 1049
HGIQ+KL V+ Q++DDS N+ V T K
Sbjct: 303 SSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQK 337
>ref|NP_536349.2| sp110 nuclear body protein isoform c [Homo sapiens].
Length = 713
Score = 270 bits (691), Expect = 1e-72
Identities = 156/335 (46%), Positives = 190/335 (56%), Gaps = 28/335 (8%)
Frame = +3
Query: 129 TMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVS 308
TMTR +EEALFQHF+HQKL IAYAI+KPFPFFEGL DN+ IT +Y ESLEACRNL+PVS
Sbjct: 3 TMTRAMEEALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVS 62
Query: 309 RVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGWSRXXXXXXX 488
RVV+NILT+LE+TF+LS L LF INL EYP+L+ +++SFK V S+ SR
Sbjct: 63 RVVHNILTQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRVGASYERQSRDTPILLE 122
Query: 489 XXXXXXXRSSVRPLLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKPPSPAGLAKT 668
SS+ L LP Q Q S EIL + PSP+
Sbjct: 123 APTGLAEGSSLHTPLALPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLP 182
Query: 669 PPGIIQEGRLT----------------------------PVSSDSLILQTEDKEDTPEVP 764
P +IQEGR T V+SD+LI Q DKED E+P
Sbjct: 183 LPALIQEGRSTSVTNDKLTSKMNAEEDSEEMPSLLTSTVQVASDNLIPQIRDKEDPQEMP 242
Query: 765 CTPSGSAPAIKDDSPKPHDPEELQEAPRMPPHXXXXXXXRCIWGTPKRRHRKKCLPREGA 944
+P GS P I+D+SP+P+DPEE QE P RCIW TPKRRH+KK LP A
Sbjct: 243 HSPLGSMPEIRDNSPEPNDPEEPQEVSSTPSDKKGKKRKRCIWSTPKRRHKKKSLPGGTA 302
Query: 945 LPDHGIQEKLXGVESETQREDDSPGNAEVMTTPPK 1049
HGIQ+KL V+ Q++DDS N+ V T K
Sbjct: 303 SSRHGIQKKLKRVDQVPQKKDDSTCNSTVETRAQK 337
>ref|NP_612411.4| nuclear body protein SP140-like protein [Homo sapiens].
Length = 580
Score = 124 bits (310), Expect = 2e-28
Identities = 60/116 (51%), Positives = 82/116 (70%), Gaps = 5/116 (4%)
Frame = +3
Query: 111 SVSRRITMTRPLEEAL-----FQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRES 275
S+ R T + ++E L F+HF KLEI+ AI K FPF EGLRD IT+ ++ +S
Sbjct: 33 SLQRLFTEDQDVDEGLVYDTVFKHFKRHKLEISNAIKKTFPFLEGLRDRELITNKMFEDS 92
Query: 276 LEACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
++CRNLVPV RVVYN+L++LEKTF+LS LE LF +N+ EYP L+ ++KSFKN +
Sbjct: 93 EDSCRNLVPVQRVVYNVLSELEKTFNLSVLEALFSEVNMQEYPDLIHIYKSFKNAI 148
>ref|NP_001193633.1| nuclear autoantigen Sp-100 isoform 6 [Homo sapiens].
Length = 445
Score = 119 bits (299), Expect = 4e-27
Identities = 54/102 (52%), Positives = 77/102 (75%)
Frame = +3
Query: 138 RPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVV 317
R L + +F+HF K+EI+ AI K FPF EGLRD + IT+ ++ +S ++CRNLVPV RVV
Sbjct: 12 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 71
Query: 318 YNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
YN+L++LEKTF+L LE LF +N+ EYP L+ ++K F+NV+
Sbjct: 72 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVI 113
>ref|NP_001193632.1| nuclear autoantigen Sp-100 isoform 5 [Homo sapiens].
Length = 452
Score = 119 bits (299), Expect = 4e-27
Identities = 54/102 (52%), Positives = 77/102 (75%)
Frame = +3
Query: 138 RPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVV 317
R L + +F+HF K+EI+ AI K FPF EGLRD + IT+ ++ +S ++CRNLVPV RVV
Sbjct: 22 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 81
Query: 318 YNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
YN+L++LEKTF+L LE LF +N+ EYP L+ ++K F+NV+
Sbjct: 82 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVI 123
>ref|NP_001193631.1| nuclear autoantigen Sp-100 isoform 4 [Homo sapiens].
Length = 480
Score = 119 bits (299), Expect = 4e-27
Identities = 54/102 (52%), Positives = 77/102 (75%)
Frame = +3
Query: 138 RPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVV 317
R L + +F+HF K+EI+ AI K FPF EGLRD + IT+ ++ +S ++CRNLVPV RVV
Sbjct: 47 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 106
Query: 318 YNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
YN+L++LEKTF+L LE LF +N+ EYP L+ ++K F+NV+
Sbjct: 107 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVI 148
>ref|NP_001193630.1| nuclear autoantigen Sp-100 isoform 3 [Homo sapiens].
Length = 688
Score = 119 bits (299), Expect = 4e-27
Identities = 54/102 (52%), Positives = 77/102 (75%)
Frame = +3
Query: 138 RPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVV 317
R L + +F+HF K+EI+ AI K FPF EGLRD + IT+ ++ +S ++CRNLVPV RVV
Sbjct: 47 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 106
Query: 318 YNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
YN+L++LEKTF+L LE LF +N+ EYP L+ ++K F+NV+
Sbjct: 107 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVI 148
>ref|NP_001073860.1| nuclear autoantigen Sp-100 isoform 1 [Homo sapiens].
Length = 885
Score = 119 bits (299), Expect = 4e-27
Identities = 54/102 (52%), Positives = 77/102 (75%)
Frame = +3
Query: 138 RPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVV 317
R L + +F+HF K+EI+ AI K FPF EGLRD + IT+ ++ +S ++CRNLVPV RVV
Sbjct: 47 RLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVV 106
Query: 318 YNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
YN+L++LEKTF+L LE LF +N+ EYP L+ ++K F+NV+
Sbjct: 107 YNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVI 148
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 47,408,128
Number of extensions: 1489527
Number of successful extensions: 8320
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 8144
Number of HSP's successfully gapped: 13
Length of query: 355
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 251
Effective length of database: 14,868,908
Effective search space: 3732095908
Effective search space used: 3732095908
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007416
(1066 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780606.3| sp110 nuclear body protein [Mus musculus]. 243 1e-64
Alignment gi|XP_001475687.2| PREDICTED: interferon-induced protein 75-lik... 147 1e-35
Alignment gi|XP_003085580.1| PREDICTED: interferon-induced protein 75-lik... 147 2e-35
Alignment gi|NP_796029.2| hypothetical protein LOC319997 [Mus musculus]. 102 7e-22
Alignment gi|NP_780428.1| SP140 nuclear body protein family member isofor... 98 1e-20
Alignment gi|XP_001475769.2| PREDICTED: sp110 nuclear body protein-like i... 98 1e-20
Alignment gi|NP_001013839.1| SP140 nuclear body protein family member [Mu... 94 2e-19
Alignment gi|NP_001032998.2| SP140 nuclear body protein family member iso... 94 2e-19
Alignment gi|XP_003085583.1| PREDICTED: sp110 nuclear body protein-like [... 94 2e-19
Alignment gi|XP_001475841.1| PREDICTED: component of Sp100-rs-like [Mus m... 92 7e-19
>ref|NP_780606.3| sp110 nuclear body protein [Mus musculus].
Length = 445
Score = 243 bits (621), Expect = 1e-64
Identities = 142/315 (45%), Positives = 185/315 (58%), Gaps = 5/315 (1%)
Frame = +3
Query: 129 TMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVS 308
T+T+ LE+AL QHFI+ K+ IAYAINKPFPFFE LRDN+FIT+ +Y+ESLEAC+NLVP+S
Sbjct: 3 TLTKALEKALLQHFIYMKVNIAYAINKPFPFFEALRDNSFITERMYKESLEACQNLVPLS 62
Query: 309 RVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGWSRXXXXXXX 488
+VV+NILT LE+TF S L LF +NL EYPSL+A+F+SF+NV ++ +R
Sbjct: 63 KVVHNILTSLEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRNVGYTYEEKNRPPLTLLE 122
Query: 489 XXXXXXXRSSVRPLLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKPPSPAGLAKT 668
S++ LLP P Q A QP EIL + PSP+ A
Sbjct: 123 DLANPAEGCSLQTLLPPPRPQISLPSHLSSAPRVCDPRATAQPIIEILDEQPSPSPRAVP 182
Query: 669 PPGIIQEGRLTPVSSDSLILQTEDKEDTPEVPCTPSGSAPAIKDDSPKPHDPEELQEAPR 848
G IQEG+ TPVSS Q +DKED+ E+P +PSG +KDDSP +D E +E P
Sbjct: 183 LLGCIQEGKTTPVSSRD--HQRKDKEDSREMPHSPSGPESVVKDDSPAANDLEMAREVPC 240
Query: 849 MPPHXXXXXXXRCIWGTPKRRHRKKCLPREG-----ALPDHGIQEKLXGVESETQREDDS 1013
P + R W KRR +KK PR+ A P HG+QEKL V T +DDS
Sbjct: 241 TPANKKARRKKRPNWSNSKRRRQKK-KPRQDEMMGVASPGHGVQEKLKAVSRRTLWKDDS 299
Query: 1014 PGNAEVMTTPPKTSL 1058
N + +T +T +
Sbjct: 300 STNVKEVTKTQRTRM 314
>ref|XP_001475687.2| PREDICTED: interferon-induced protein 75-like [Mus musculus].
Length = 496
Score = 147 bits (371), Expect = 1e-35
Identities = 70/112 (62%), Positives = 90/112 (80%)
Frame = +3
Query: 105 AVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEA 284
+V R T+T+ LE+AL QHFI+ K+ I YAINKPFPFFE LRD +FIT+ +Y+ESLEA
Sbjct: 229 SVHGGRMFTLTKALEKALLQHFIYMKVNITYAINKPFPFFEALRDKSFITERMYKESLEA 288
Query: 285 CRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNV 440
C+NLVP+S+VV+NILT LE+TF S L LF +NL EYPSL+A+F+SF+NV
Sbjct: 289 CQNLVPLSKVVHNILTSLEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRNV 340
Score = 93.6 bits (231), Expect = 2e-19
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E CRNL+PV RVVY+IL
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQETCRNLLPVERVVYDIL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSF 431
+ ++K FS L+++F +L YP L K F
Sbjct: 86 SNVQKKFSRDLLKVIFSKTHLKAYPDLNETLKHF 119
Score = 68.2 bits (165), Expect = 1e-11
Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Frame = +3
Query: 735 EDKEDTPEVPCTPSGSAPAIKDDSPKPHDPEELQEAPRMPPHXXXXXXXRCIWGTPKRRH 914
+DKED+ E+P +PSG +KDDSP + QE P P + W KRR
Sbjct: 348 KDKEDSREMPHSPSGPESVVKDDSPAANALAMAQEVPCTPANKKARRKKHPNWSNSKRRQ 407
Query: 915 RKKCLPREG-----ALPDHGIQEKLXGVESETQREDDSPGNAEVMT 1037
+KK PR+ A P HG+QEKL V T +DDS N + +T
Sbjct: 408 QKK-KPRQDEMMGVASPGHGVQEKLKAVSRRTLWKDDSSTNVKEVT 452
>ref|XP_003085580.1| PREDICTED: interferon-induced protein 75-like [Mus musculus].
Length = 480
Score = 147 bits (370), Expect = 2e-35
Identities = 69/107 (64%), Positives = 88/107 (82%)
Frame = +3
Query: 120 RRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLV 299
R T+T+ LE+AL QHFI+ K+ I YAINKPFPFFE LRD +FIT+ +Y+ESLEAC+NLV
Sbjct: 218 RMFTLTKALEKALLQHFIYMKVNITYAINKPFPFFEALRDKSFITERMYKESLEACQNLV 277
Query: 300 PVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNV 440
P+S+VV+NILT LE+TF S L LF +NL EYPSL+A+F+SF+NV
Sbjct: 278 PLSKVVHNILTSLEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRNV 324
Score = 94.0 bits (232), Expect = 2e-19
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E CRNL+PV RVVY+IL
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYXETCRNLLPVDRVVYDIL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSF 431
+ ++K FS L+++F +L YP L K F
Sbjct: 86 SNVQKKFSRDLLKVIFSKTHLKAYPDLNETLKHF 119
Score = 70.1 bits (170), Expect = 3e-12
Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Frame = +3
Query: 729 QTEDKEDTPEVPCTPSGSAPAIKDDSPKPHDPEELQEAPRMPPHXXXXXXXRCIWGTPKR 908
Q +DKED+ E+P +PSG +KDDSP H QE P P + W KR
Sbjct: 330 QRKDKEDSREMPHSPSGPESVVKDDSPAAHALAMAQEVPCTPANKKARRKKHPNWSNSKR 389
Query: 909 RHRKKCLPREG----ALPDHGIQEKLXGVESETQREDDSPGNAEVMT 1037
R +KK ++ A P HG+QEKL V T +DDS N + +T
Sbjct: 390 RQQKKKPCQDEMMGVASPGHGVQEKLKAVSRRTLWKDDSSTNVKEVT 436
>ref|NP_796029.2| hypothetical protein LOC319997 [Mus musculus].
Length = 229
Score = 102 bits (253), Expect = 7e-22
Identities = 49/93 (52%), Positives = 63/93 (67%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
E +F K+EIA+AI K FPF E LRD++FITD +Y +S EACRN VP+ VVYN+L
Sbjct: 13 EVFLNYFKENKIEIAHAITKLFPFLESLRDHSFITDKIYADSYEACRNSVPIVEVVYNVL 72
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKS 428
+ LE+ SFL LF +NL EYP+L + KS
Sbjct: 73 SHLERLSDSSFLWALFNRVNLKEYPALREIHKS 105
>ref|NP_780428.1| SP140 nuclear body protein family member isoform 1 [Mus musculus].
Length = 291
Score = 97.8 bits (242), Expect = 1e-20
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E C+NLVPV RVVY++L
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQETCKNLVPVERVVYDVL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKS-FKNVVTSHRGWSR 467
+ ++K FS L+++F +L YP L K F NV SHR R
Sbjct: 86 SNVQKKFSRDLLKVIFSKTHLKAYPDLKETLKHFFLNVSDSHRTHQR 132
>ref|XP_001475769.2| PREDICTED: sp110 nuclear body protein-like isoform 1 [Mus
musculus].
Length = 291
Score = 97.8 bits (242), Expect = 1e-20
Identities = 49/107 (45%), Positives = 68/107 (63%), Gaps = 1/107 (0%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E C+NLVPV RVVY++L
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQETCKNLVPVERVVYDVL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKS-FKNVVTSHRGWSR 467
+ ++K FS L+++F +L YP L K F NV SHR R
Sbjct: 86 SNVQKKFSWDLLKVIFSKTHLKAYPDLKETLKHFFLNVSDSHRTHQR 132
>ref|NP_001013839.1| SP140 nuclear body protein family member [Mus musculus].
Length = 534
Score = 94.0 bits (232), Expect = 2e-19
Identities = 44/94 (46%), Positives = 62/94 (65%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E C+NLVPV RVVY+IL
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQETCKNLVPVERVVYDIL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSF 431
+ ++K FS L+++F +L YP L K F
Sbjct: 86 SNVQKKFSRDLLKVIFSKTHLKAYPDLKETLKHF 119
>ref|NP_001032998.2| SP140 nuclear body protein family member isoform 2 [Mus musculus].
Length = 263
Score = 93.6 bits (231), Expect = 2e-19
Identities = 43/94 (45%), Positives = 62/94 (65%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E C+NLVPV RVVY++L
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQETCKNLVPVERVVYDVL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSF 431
+ ++K FS L+++F +L YP L K F
Sbjct: 86 SNVQKKFSRDLLKVIFSKTHLKAYPDLKETLKHF 119
>ref|XP_003085583.1| PREDICTED: sp110 nuclear body protein-like [Mus musculus].
Length = 263
Score = 93.6 bits (231), Expect = 2e-19
Identities = 43/94 (45%), Positives = 62/94 (65%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
+ +F+HF K+EIA AI KPFPF LRD +FI++ ++E E C+NLVPV RVVY++L
Sbjct: 26 QLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQETCKNLVPVERVVYDVL 85
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSF 431
+ ++K FS L+++F +L YP L K F
Sbjct: 86 SNVQKKFSWDLLKVIFSKTHLKAYPDLKETLKHF 119
>ref|XP_001475841.1| PREDICTED: component of Sp100-rs-like [Mus musculus].
Length = 178
Score = 92.0 bits (227), Expect = 7e-19
Identities = 43/97 (44%), Positives = 64/97 (65%)
Frame = +3
Query: 144 LEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYN 323
L E + +HF QK+ I+ AI FPF E LRD FIT +Y + L++CR+LVPV +V+Y
Sbjct: 73 LIECMLKHFKTQKVAISNAIRSTFPFLESLRDREFITGKMYEDLLDSCRSLVPVDKVIYR 132
Query: 324 ILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFK 434
L +LEK F ++ L LF +N+ +YP+L + +SF+
Sbjct: 133 ALEELEKKFDMTVLCELFNEVNMEKYPNLNLIRRSFE 169
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 39,988,554
Number of extensions: 1235739
Number of successful extensions: 6649
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6457
Number of HSP's successfully gapped: 19
Length of query: 355
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 253
Effective length of database: 12,553,887
Effective search space: 3176133411
Effective search space used: 3176133411
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007416
(1066 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133766.2| PREDICTED: sp110 nuclear body protein-like [... 541 e-154
Alignment gi|XP_003133755.1| PREDICTED: nuclear autoantigen Sp-100-like [... 120 2e-27
Alignment gi|XP_003133754.1| PREDICTED: nuclear body protein SP140-like [... 104 1e-22
>ref|XP_003133766.2| PREDICTED: sp110 nuclear body protein-like [Sus scrofa].
Length = 648
Score = 541 bits (1395), Expect = e-154
Identities = 271/317 (85%), Positives = 275/317 (86%)
Frame = +3
Query: 102 MAVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLE 281
MAVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLE
Sbjct: 1 MAVSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLE 60
Query: 282 ACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGW 461
ACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGW
Sbjct: 61 ACRNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVVTSHRGW 120
Query: 462 SRXXXXXXXXXXXXXXRSSVRPLLPLPACQXXXXXXXXXXXXXXXXAAPVQPSTEILPKP 641
SR RSSVRPLLPLPACQ AAPVQPSTEILPKP
Sbjct: 121 SRSAAAPQEAPASTAERSSVRPLLPLPACQGPPPSGPSLVPSVSEPAAPVQPSTEILPKP 180
Query: 642 PSPAGLAKTPPGIIQEGRLTPVSSDSLILQTEDKEDTPEVPCTPSGSAPAIKDDSPKPHD 821
PSPAGLAKTPPGIIQEGRLTPVSSDSLILQTEDKEDTPEVPCTPSGSAPAIKDDSPKPHD
Sbjct: 181 PSPAGLAKTPPGIIQEGRLTPVSSDSLILQTEDKEDTPEVPCTPSGSAPAIKDDSPKPHD 240
Query: 822 PEELQEAPRMPPHXXXXXXXRCIWGTPKRRHRKKCLPREGALPDHGIQEKLXGVESETQR 1001
PEELQEAPRMPP+ RCIW TPKRRH+KKCLPREGALPDHGIQEKL GV+ ETQR
Sbjct: 241 PEELQEAPRMPPNKKGKKKKRCIWATPKRRHKKKCLPREGALPDHGIQEKLQGVDQETQR 300
Query: 1002 EDDSPGNAEVMTTPPKT 1052
+DDS GNAEVMTT PKT
Sbjct: 301 KDDSTGNAEVMTTAPKT 317
>ref|XP_003133755.1| PREDICTED: nuclear autoantigen Sp-100-like [Sus scrofa].
Length = 386
Score = 120 bits (300), Expect = 2e-27
Identities = 57/112 (50%), Positives = 76/112 (67%)
Frame = +3
Query: 108 VSVSRRITMTRPLEEALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEAC 287
+SV R T + E +F HF K+EI+ AI KPFPF EGLRD IT+ +Y + ++C
Sbjct: 12 MSVETRNTDDELIYEIVFNHFKRHKVEISNAIKKPFPFLEGLRDRELITNKMYEDFQDSC 71
Query: 288 RNLVPVSRVVYNILTKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
RNLVPV RVVY +L++LEK F L LE LF +N+ EYP L ++KSF+NV+
Sbjct: 72 RNLVPVPRVVYKVLSELEKIFDLPLLEALFSEVNMQEYPDLNQIYKSFENVI 123
>ref|XP_003133754.1| PREDICTED: nuclear body protein SP140-like [Sus scrofa].
Length = 752
Score = 104 bits (259), Expect = 1e-22
Identities = 48/98 (48%), Positives = 67/98 (68%)
Frame = +3
Query: 150 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 329
E +F+ F K++I+ I +PFPF GLRD +FI + +Y LEACRNLVPV RV+Y++L
Sbjct: 31 ELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVL 90
Query: 330 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 443
++LEK F + LE LF INL YP L +F+ FK ++
Sbjct: 91 SELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMI 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,994,140
Number of extensions: 954899
Number of successful extensions: 5263
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5167
Number of HSP's successfully gapped: 3
Length of query: 355
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 255
Effective length of database: 8,854,232
Effective search space: 2257829160
Effective search space used: 2257829160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007416
(1066 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 531 e-148
>Sscrofa_Chr15
|| Length = 157681621
Score = 531 bits (268), Expect = e-148
Identities = 268/268 (100%)
Strand = Plus / Minus
Query: 438 gtggtcacctcccacagagggtggagcagaagcgcagctgcccctcaggaagccccagcc 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144893716 gtggtcacctcccacagagggtggagcagaagcgcagctgcccctcaggaagccccagcc 144893657
Query: 498 agcacagcagaaaggagctccgtccggcccttgctgccattgcctgcctgccaggggccc 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144893656 agcacagcagaaaggagctccgtccggcccttgctgccattgcctgcctgccaggggccc 144893597
Query: 558 ccacccagcggtccgtccttggtgcccagtgtcagtgagcccgcagcacctgtccagccc 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144893596 ccacccagcggtccgtccttggtgcccagtgtcagtgagcccgcagcacctgtccagccc 144893537
Query: 618 agcactgagattctgcccaagccacccagccctgctggcctcgccaagactcccccagga 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144893536 agcactgagattctgcccaagccacccagccctgctggcctcgccaagactcccccagga 144893477
Query: 678 atcatccaggaaggaaggctcactccag 705
||||||||||||||||||||||||||||
Sbjct: 144893476 atcatccaggaaggaaggctcactccag 144893449
Score = 337 bits (170), Expect = 7e-90
Identities = 170/170 (100%)
Strand = Plus / Minus
Query: 269 ggagtcattggaagcctgcagaaatctggtccctgtatccagagtagtatacaacatcct 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144894530 ggagtcattggaagcctgcagaaatctggtccctgtatccagagtagtatacaacatcct 144894471
Query: 329 caccaaactggagaagacctttagcctgtcctttctggagatgctgtttggccacatcaa 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144894470 caccaaactggagaagacctttagcctgtcctttctggagatgctgtttggccacatcaa 144894411
Query: 389 cctttatgagtacccaagcctgatggcagttttcaagagcttcaaaaatg 438
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144894410 cctttatgagtacccaagcctgatggcagttttcaagagcttcaaaaatg 144894361
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 120 aggagaatcaccatgaccaggcccttagaagaggctctttttcagcacttcatccatcag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144906112 aggagaatcaccatgaccaggcccttagaagaggctctttttcagcacttcatccatcag 144906053
Query: 180 aagctggagattgcttatgccataaataagccatttcccttctttgaaggactccgagac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144906052 aagctggagattgcttatgccataaataagccatttcccttctttgaaggactccgagac 144905993
Query: 240 aacaacttcatcaccgatacactatacaggg 270
|||||||||||||||||||||||||||||||
Sbjct: 144905992 aacaacttcatcaccgatacactatacaggg 144905962
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1 gcacagacttcctgttttgcctaacctacctccctgccctgctcccaggcttccagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144909179 gcacagacttcctgttttgcctaacctacctccctgccctgctcccaggcttccagagcc 144909120
Query: 61 atcctgggagagcccctggacctggaaagggaaaggaacagatggcagtctcagtatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144909119 atcctgggagagcccctggacctggaaagggaaaggaacagatggcagtctcagtatcca 144909060
Query: 121 gg 122
||
Sbjct: 144909059 gg 144909058
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 703 cagtgtccagcgacagcctgatcctccagacagaagataaagaagacaccccagaggtgc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144891622 cagtgtccagcgacagcctgatcctccagacagaagataaagaagacaccccagaggtgc 144891563
Query: 763 cctgcaccccctcaggctccgcaccag 789
|||||||||||||||||||||||||||
Sbjct: 144891562 cctgcaccccctcaggctccgcaccag 144891536
Score = 168 bits (85), Expect = 4e-39
Identities = 113/120 (94%), Gaps = 2/120 (1%)
Strand = Plus / Minus
Query: 935 agagggagccttacctgaccatggaatccaagagaagctccnaggggtggaatcag-aga 993
||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||
Sbjct: 144885462 agagggagccttacctgaccatggaatccaagagaagctccaaggggtgga-tcaggaga 144885404
Query: 994 ctcagagggaagatgactcacccgggaacgcagaggtcatgacaacgccccccaagacaa 1053
|||||||| | ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 144885403 ctcagaggaaggatgactcaaccgggaacgcagaggtcatgacaacggcccccaagacaa 144885344
Score = 155 bits (78), Expect = 6e-35
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 787 cagcgataaaagatgattctcccaaaccacatgacccagaggaactccaagaggcaccca 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144889993 cagcgataaaagatgattctcccaaaccacatgacccagaggaactccaagaggcaccca 144889934
Query: 847 ggatgcctccccacaagaaagg 868
||||||||||| ||||||||||
Sbjct: 144889933 ggatgcctcccaacaagaaagg 144889912
Score = 83.8 bits (42), Expect = 2e-13
Identities = 51/54 (94%)
Strand = Plus / Minus
Query: 883 gatgtatctggggcacccccaaaagaagacacaggaaaaaatgcctcccaagag 936
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 144887993 gatgtatctgggcaacccccaaaagaagacacaagaaaaaatgcctcccaagag 144887940
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,575,620
Number of extensions: 327
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 8
Length of query: 1066
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1045
Effective length of database: 2,808,413,156
Effective search space: 2934791748020
Effective search space used: 2934791748020
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)