Animal-Genome cDNA 20110601C-007417


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007417
         (1432 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001068915.1| SP140 nuclear body protein [Bos taurus].          241   9e-64
Alignment   gi|XP_002685721.1| PREDICTED: nuclear antigen Sp100-like [Bos t...   130   2e-30
Alignment   gi|XP_001789492.2| PREDICTED: nuclear antigen Sp100-like [Bos t...   130   2e-30
Alignment   gi|NP_001124237.1| hypothetical protein LOC100139208 [Bos tauru...   122   6e-28
Alignment   gi|XP_001788173.1| PREDICTED: SP110 nuclear body protein [Bos t...    94   4e-19

>ref|NP_001068915.1| SP140 nuclear body protein [Bos taurus].
          Length = 411

 Score =  241 bits (616), Expect = 9e-64
 Identities = 138/268 (51%), Positives = 166/268 (61%), Gaps = 7/268 (2%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MAS GS  +CR  T  QN EEQ  +EQ   E IF  F+E KV+I+  I +PFPFLMGLRD
Sbjct: 1    MASAGSPSNCRMITEDQNLEEQHLEEQLCYEFIFMLFKEKKVEIAGAILKPFPFLMGLRD 60

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI E MY+ F EACRNLVPVERV Y+ L ELEKKFD+TVLEALFS +NLKAYPDL QI
Sbjct: 61   RGFISEPMYQDFQEACRNLVPVERVAYNALDELEKKFDKTVLEALFSKVNLKAYPDLLQI 120

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD 1149
              +F+  I + F YQI +EGETK+M+N QL  EQV LE + LQMN++RG E  PRL P +
Sbjct: 121  CNNFQNAIRDKFYYQILDEGETKEMLNSQLNHEQVSLEHSPLQMNSVRGFESMPRLLPYN 180

Query: 1150 RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPLYKE--- 1320
            RQ  SNA  E    E   E      RY PV+ +P A      G+ +E L  LP   E   
Sbjct: 181  RQENSNAWDE----EWPQEASSFSPRYVPVTSDPKAPQVPPEGEPKEVLSLLPAEGEEDN 236

Query: 1321 ----VTCDSKAPQMTHQGRIPGGAQPIT 1392
                V C+ + PQ       P   +P+T
Sbjct: 237  NACCVICEEEEPQEALSS--PSRCEPVT 262


>ref|XP_002685721.1| PREDICTED: nuclear antigen Sp100-like [Bos taurus].
          Length = 422

 Score =  130 bits (328), Expect = 2e-30
 Identities = 69/150 (46%), Positives = 100/150 (66%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA  G +LS R      + E+Q+ D + F E +FR F+ +KV IS+ I + FPF  GL D
Sbjct: 1    MAGEGRELSTR-----MSLEDQNIDNRLF-ETVFRHFKRHKVQISNAIKKTFPFFEGLHD 54

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
               I  +MYE   ++CRNLVPV RV+Y+VLSELEK F+ ++LEA+FS +N++ YPDL+ I
Sbjct: 55   NELITSKMYEDCQDSCRNLVPVSRVVYNVLSELEKTFNPSLLEAVFSEVNMQEYPDLNNI 114

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQL 1059
            ++ F+K+I E  NY+ +N G+ +  I L L
Sbjct: 115  YKSFEKVIQEKINYEESN-GQKRPTIQLSL 143


>ref|XP_001789492.2| PREDICTED: nuclear antigen Sp100-like [Bos taurus].
          Length = 422

 Score =  130 bits (328), Expect = 2e-30
 Identities = 69/150 (46%), Positives = 100/150 (66%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA  G +LS R      + E+Q+ D + F E +FR F+ +KV IS+ I + FPF  GL D
Sbjct: 1    MAGEGRELSTR-----MSLEDQNIDNRLF-ETVFRHFKRHKVQISNAIKKTFPFFEGLHD 54

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
               I  +MYE   ++CRNLVPV RV+Y+VLSELEK F+ ++LEA+FS +N++ YPDL+ I
Sbjct: 55   NELITSKMYEDCQDSCRNLVPVSRVVYNVLSELEKTFNPSLLEAVFSEVNMQEYPDLNNI 114

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQL 1059
            ++ F+K+I E  NY+ +N G+ +  I L L
Sbjct: 115  YKSFEKVIQEKINYEESN-GQKRPTIQLSL 143


>ref|NP_001124237.1| hypothetical protein LOC100139208 [Bos taurus].
          Length = 123

 Score =  122 bits (307), Expect = 6e-28
 Identities = 61/125 (48%), Positives = 89/125 (71%)
 Frame = +1

Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
           MA  GS+LS R  T     E Q+++++   E IFR F+ +KV+IS+ I + FPF  GLRD
Sbjct: 1   MAGEGSELSTRMST-----ENQNTEDRLVFETIFRHFKRHKVEISTAIKKTFPFFEGLRD 55

Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
           R  I  +MYE   ++CRNLVPV +V+Y+VLSELEK F++++LEALFS +N++ YPDL+ +
Sbjct: 56  RELITNKMYEDCQDSCRNLVPVPKVVYNVLSELEKTFNQSLLEALFSDVNMQEYPDLNHV 115

Query: 970 FRDFK 984
            + F+
Sbjct: 116 RKSFE 120


>ref|XP_001788173.1| PREDICTED: SP110 nuclear body protein [Bos taurus].
          Length = 678

 Score = 93.6 bits (231), Expect = 4e-19
 Identities = 42/96 (43%), Positives = 64/96 (66%)
 Frame = +1

Query: 706 IFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSE 885
           + + F + K++I+  I +PFPF  GLRD  FI E++Y   +EAC NLVP+ RV+Y++L++
Sbjct: 9   LLQHFIQQKLEIAYAINKPFPFFEGLRDNFFITERLYRESMEACENLVPLSRVVYNILTQ 68

Query: 886 LEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMI 993
           LEK F  + L+ LFS INL  YP+L      F +++
Sbjct: 69  LEKTFSLSFLKILFSQINLNEYPNLITTLNSFTRVV 104


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,923,630
Number of extensions: 1629792
Number of successful extensions: 5791
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5784
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,174,046
Effective search space: 5258571066
Effective search space used: 5258571066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007417
         (1432 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852450.1| PREDICTED: similar to SP140 nuclear body protei...   241   1e-63
Alignment   gi|XP_534598.2| PREDICTED: similar to Nuclear autoantigen Sp-10...   132   8e-31

>ref|XP_852450.1| PREDICTED: similar to SP140 nuclear body protein isoform 1 [Canis
            familiaris].
          Length = 763

 Score =  241 bits (615), Expect = 1e-63
 Identities = 133/242 (54%), Positives = 169/242 (69%), Gaps = 5/242 (2%)
 Frame = +1

Query: 649  TGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFL 828
            TG QNPE+Q S+EQ F E IFR F+ENKV+I+S I +PFP LMGLRDR FIPEQM++HF 
Sbjct: 3    TGSQNPEDQMSEEQVFYEFIFRLFKENKVEIASAIKKPFPLLMGLRDRGFIPEQMFQHFQ 62

Query: 829  EACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFN 1008
            EACRNLVPVERV+YDVLSELEK FD+TVL+ALFS++NLKAYPDL +I R F+ +I +NF+
Sbjct: 63   EACRNLVPVERVIYDVLSELEKTFDKTVLDALFSNLNLKAYPDLLEICRSFQNVIRDNFH 122

Query: 1009 YQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRDRQGVS---NALLE 1179
            Y+  +E ETK++++ Q+  +    ER+ LQ+NNIRGLEDTP LQP + Q VS    +   
Sbjct: 123  YEAMDEEETKEVLHFQMHHKLESCERSLLQVNNIRGLEDTPSLQPHEGQ-VSCEHESPQR 181

Query: 1180 TSAG--EQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPLYKEVTCDSKAPQMT 1353
            TS G  E+  E L           N  AL   + G+SEE    L   +EVTCD   P MT
Sbjct: 182  TSGGDIEEIHELLPG---------NGGALQMDEGGESEEMSRLLLYDREVTCDPGVPSMT 232

Query: 1354 HQ 1359
            ++
Sbjct: 233  NE 234


>ref|XP_534598.2| PREDICTED: similar to Nuclear autoantigen Sp-100 (Speckled 100 kDa)
            (Nuclear dot-associated Sp100 protein) (Lysp100b) [Canis
            familiaris].
          Length = 835

 Score =  132 bits (332), Expect = 8e-31
 Identities = 63/135 (46%), Positives = 95/135 (70%)
 Frame = +1

Query: 667  EEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNL 846
            E+Q+ +E+   E +F+ F+  KV+ISS I +PFPF  GLRDR  I  +MYE   E+CRNL
Sbjct: 55   EDQNIEEKLVYETLFKHFKRYKVEISSAIKKPFPFFEGLRDRELITNKMYEDCQESCRNL 114

Query: 847  VPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNE 1026
            +PV++V+Y+VL+ELEK F+  +LEALFS +N++ YPDL+ I+R+F+ ++ E  +Y  + E
Sbjct: 115  IPVQKVVYNVLNELEKTFNLPLLEALFSEVNVQEYPDLNGIYRNFEHVVQEKIHYGESYE 174

Query: 1027 GETKDMINLQLGREQ 1071
             E  +  N+Q   EQ
Sbjct: 175  EEVDENPNIQRSLEQ 189


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,404,215
Number of extensions: 1690709
Number of successful extensions: 5981
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5975
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 370
Effective length of database: 15,307,552
Effective search space: 5663794240
Effective search space used: 5663794240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007417
         (1432 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_009168.4| nuclear body protein SP140 isoform 1 [Homo sapi...   191   2e-48
Alignment   gi|NP_001005176.1| nuclear body protein SP140 isoform 2 [Homo s...   162   7e-40
Alignment   gi|NP_001193632.1| nuclear autoantigen Sp-100 isoform 5 [Homo s...   145   9e-35
Alignment   gi|NP_001193631.1| nuclear autoantigen Sp-100 isoform 4 [Homo s...   135   7e-32
Alignment   gi|NP_001193630.1| nuclear autoantigen Sp-100 isoform 3 [Homo s...   135   7e-32
Alignment   gi|NP_001073860.1| nuclear autoantigen Sp-100 isoform 1 [Homo s...   135   7e-32
Alignment   gi|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapi...   135   7e-32
Alignment   gi|NP_001193633.1| nuclear autoantigen Sp-100 isoform 6 [Homo s...   132   6e-31
Alignment   gi|NP_612411.4| nuclear body protein SP140-like protein [Homo s...   132   1e-30
Alignment   gi|NP_004500.3| sp110 nuclear body protein isoform a [Homo sapi...    99   7e-21

>ref|NP_009168.4| nuclear body protein SP140 isoform 1 [Homo sapiens].
          Length = 867

 Score =  191 bits (484), Expect = 2e-48
 Identities = 120/242 (49%), Positives = 138/242 (57%), Gaps = 4/242 (1%)
 Frame = +1

Query: 595  GGPEKMASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFL 774
            G   +MASG S+L+ R     QN E Q+  EQ   E IFRFFRENKV+I+S IT+PFPFL
Sbjct: 5    GQQGQMASGDSNLNFRMVAEIQNVEGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFL 64

Query: 775  MGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYP 954
            MGLRDRSFI EQMYEHF EA RNLVPV RVMY VLSELEK F  + LEALFS INL AYP
Sbjct: 65   MGLRDRSFISEQMYEHFQEAFRNLVPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYP 124

Query: 955  DLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPR 1134
            DL++I+R F                            + V  E + LQMNN+  LED PR
Sbjct: 125  DLNEIYRSF----------------------------QNVCYEHSPLQMNNVNDLEDRPR 156

Query: 1135 LQPRDRQGVSNALLETSAGEQTLETLRSPQRYWP----VSCNPAALPRGKRGKSEETLGW 1302
            L P  +Q  SNA  E        E L S  R  P     SC   ALP+   G +E+    
Sbjct: 157  LLPYGKQENSNACHEMDDIAVPQEALSSSPRCEPGFSSESCEQLALPKAGGGDAEDAPSL 216

Query: 1303 LP 1308
            LP
Sbjct: 217  LP 218


>ref|NP_001005176.1| nuclear body protein SP140 isoform 2 [Homo sapiens].
          Length = 172

 Score =  162 bits (410), Expect = 7e-40
 Identities = 87/130 (66%), Positives = 99/130 (76%)
 Frame = +1

Query: 595 GGPEKMASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFL 774
           G   +MASG S+L+ R     QN E Q+  EQ   E IFRFFRENKV+I+S IT+PFPFL
Sbjct: 5   GQQGQMASGDSNLNFRMVAEIQNVEGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFL 64

Query: 775 MGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYP 954
           MGLRDRSFI EQMYEHF EA RNLVPV RVMY VLSELEK F  + LEALFS INL AYP
Sbjct: 65  MGLRDRSFISEQMYEHFQEAFRNLVPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYP 124

Query: 955 DLHQIFRDFK 984
           DL++I+R F+
Sbjct: 125 DLNEIYRSFQ 134


>ref|NP_001193632.1| nuclear autoantigen Sp-100 isoform 5 [Homo sapiens].
          Length = 452

 Score =  145 bits (366), Expect = 9e-35
 Identities = 74/154 (48%), Positives = 104/154 (67%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA GG DLS R FT     E+Q  D++   +++F+ F+ NKV+IS+ I + FPFL GLRD
Sbjct: 1    MAGGGGDLSTRMFT-----EDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R  I  +M+E   ++CRNLVPV+RV+Y+VLSELEK F+  VLEALFS +N++ YPDL  I
Sbjct: 56   RDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHI 115

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
            ++ F+ +I +    Q + E E ++   LQL  EQ
Sbjct: 116  YKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 149


>ref|NP_001193631.1| nuclear autoantigen Sp-100 isoform 4 [Homo sapiens].
          Length = 480

 Score =  135 bits (341), Expect = 7e-32
 Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
            MA GG DLS R      +P                    E+Q  D++   +++F+ F+ N
Sbjct: 1    MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60

Query: 730  KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
            KV+IS+ I + FPFL GLRDR  I  +M+E   ++CRNLVPV+RV+Y+VLSELEK F+  
Sbjct: 61   KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120

Query: 910  VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
            VLEALFS +N++ YPDL  I++ F+ +I +    Q + E E ++   LQL  EQ
Sbjct: 121  VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174


>ref|NP_001193630.1| nuclear autoantigen Sp-100 isoform 3 [Homo sapiens].
          Length = 688

 Score =  135 bits (341), Expect = 7e-32
 Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
            MA GG DLS R      +P                    E+Q  D++   +++F+ F+ N
Sbjct: 1    MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60

Query: 730  KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
            KV+IS+ I + FPFL GLRDR  I  +M+E   ++CRNLVPV+RV+Y+VLSELEK F+  
Sbjct: 61   KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120

Query: 910  VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
            VLEALFS +N++ YPDL  I++ F+ +I +    Q + E E ++   LQL  EQ
Sbjct: 121  VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174


>ref|NP_001073860.1| nuclear autoantigen Sp-100 isoform 1 [Homo sapiens].
          Length = 885

 Score =  135 bits (341), Expect = 7e-32
 Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
            MA GG DLS R      +P                    E+Q  D++   +++F+ F+ N
Sbjct: 1    MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60

Query: 730  KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
            KV+IS+ I + FPFL GLRDR  I  +M+E   ++CRNLVPV+RV+Y+VLSELEK F+  
Sbjct: 61   KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120

Query: 910  VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
            VLEALFS +N++ YPDL  I++ F+ +I +    Q + E E ++   LQL  EQ
Sbjct: 121  VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174


>ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens].
          Length = 879

 Score =  135 bits (341), Expect = 7e-32
 Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
            MA GG DLS R      +P                    E+Q  D++   +++F+ F+ N
Sbjct: 1    MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60

Query: 730  KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
            KV+IS+ I + FPFL GLRDR  I  +M+E   ++CRNLVPV+RV+Y+VLSELEK F+  
Sbjct: 61   KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120

Query: 910  VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
            VLEALFS +N++ YPDL  I++ F+ +I +    Q + E E ++   LQL  EQ
Sbjct: 121  VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174


>ref|NP_001193633.1| nuclear autoantigen Sp-100 isoform 6 [Homo sapiens].
          Length = 445

 Score =  132 bits (333), Expect = 6e-31
 Identities = 64/135 (47%), Positives = 94/135 (69%)
 Frame = +1

Query: 667  EEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNL 846
            E+Q  D++   +++F+ F+ NKV+IS+ I + FPFL GLRDR  I  +M+E   ++CRNL
Sbjct: 5    EDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNL 64

Query: 847  VPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNE 1026
            VPV+RV+Y+VLSELEK F+  VLEALFS +N++ YPDL  I++ F+ +I +    Q + E
Sbjct: 65   VPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEE 124

Query: 1027 GETKDMINLQLGREQ 1071
             E ++   LQL  EQ
Sbjct: 125  EEREERSGLQLSLEQ 139


>ref|NP_612411.4| nuclear body protein SP140-like protein [Homo sapiens].
          Length = 580

 Score =  132 bits (331), Expect = 1e-30
 Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 22/178 (12%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
            MA GGSDLS R   G  +                     E+Q  DE    + +F+ F+ +
Sbjct: 1    MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60

Query: 730  KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
            K++IS+ I + FPFL GLRDR  I  +M+E   ++CRNLVPV+RV+Y+VLSELEK F+ +
Sbjct: 61   KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120

Query: 910  VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITN--EGETKDMINLQLGREQVP 1077
            VLEALFS +N++ YPDL  I++ FK  I +  ++Q ++  E E +  I L L + +VP
Sbjct: 121  VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQGEVP 178


>ref|NP_004500.3| sp110 nuclear body protein isoform a [Homo sapiens].
          Length = 689

 Score = 99.4 bits (246), Expect = 7e-21
 Identities = 46/97 (47%), Positives = 69/97 (71%)
 Frame = +1

Query: 700 ELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVL 879
           E +F+ F   K+ I+  I +PFPF  GL D S I ++MY   LEACRNL+PV RV++++L
Sbjct: 10  EALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVSRVVHNIL 69

Query: 880 SELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKM 990
           ++LE+ F+ ++L  LFS INL+ YP+L  I+R FK++
Sbjct: 70  TQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRV 106


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,308,507
Number of extensions: 1658834
Number of successful extensions: 5850
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5836
Number of HSP's successfully gapped: 13
Length of query: 477
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,802,980
Effective search space: 5491905580
Effective search space used: 5491905580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007417
         (1432 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001032998.2| SP140 nuclear body protein family member iso...   141   1e-33
Alignment   gi|NP_780428.1| SP140 nuclear body protein family member isofor...   139   4e-33
Alignment   gi|XP_001475687.2| PREDICTED: interferon-induced protein 75-lik...   138   1e-32
Alignment   gi|XP_003085583.1| PREDICTED: sp110 nuclear body protein-like [...   137   2e-32
Alignment   gi|NP_998780.2| SP140 nuclear body protein family member [Mus m...   137   2e-32
Alignment   gi|NP_001013839.1| SP140 nuclear body protein family member [Mu...   137   3e-32
Alignment   gi|XP_003085580.1| PREDICTED: interferon-induced protein 75-lik...   136   5e-32
Alignment   gi|XP_001475769.2| PREDICTED: sp110 nuclear body protein-like i...   135   6e-32
Alignment   gi|XP_003085581.1| PREDICTED: nuclear body protein SP140-like [...   135   8e-32
Alignment   gi|NP_038701.2| nuclear autoantigen Sp-100 [Mus musculus].           110   4e-24

>ref|NP_001032998.2| SP140 nuclear body protein family member isoform 2 [Mus musculus].
          Length = 263

 Score =  141 bits (355), Expect = 1e-33
 Identities = 71/148 (47%), Positives = 102/148 (68%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF R +L+ +FS  +LKAYPDL + 
Sbjct: 56   RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSRDLLKVIFSKTHLKAYPDLKET 115

Query: 970  FRDFKKMILENFNYQITNEGETKDMINL 1053
             + F        N   TN+ + ++M++L
Sbjct: 116  LKHF------FLNASKTNDEQAEEMLSL 137


>ref|NP_780428.1| SP140 nuclear body protein family member isoform 1 [Mus musculus].
          Length = 291

 Score =  139 bits (351), Expect = 4e-33
 Identities = 87/223 (39%), Positives = 124/223 (55%), Gaps = 1/223 (0%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF R +L+ +FS  +LKAYPDL   
Sbjct: 56   RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSRDLLKVIFSKTHLKAYPDL--- 112

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQ-PR 1146
                 K  L++F   +++   T   IN +   E+  L     + +     +    L  P+
Sbjct: 113  -----KETLKHFFLNVSDSHRTHQRINGRNVEERPRLPSVVREASKTNDEQAEEMLSLPQ 167

Query: 1147 DRQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKR 1275
               G  ++  E +  EQ       PQ   P S    A  R KR
Sbjct: 168  CNGGEGSSSCEQTCDEQ------EPQDDLPSSLRQEAARRKKR 204


>ref|XP_001475687.2| PREDICTED: interferon-induced protein 75-like [Mus musculus].
          Length = 496

 Score =  138 bits (347), Expect = 1e-32
 Identities = 65/124 (52%), Positives = 92/124 (74%)
 Frame = +1

Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
           MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1   MAGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
           R FI EQ ++ + E CRNL+PVERV+YD+LS ++KKF R +L+ +FS  +LKAYPDL++ 
Sbjct: 56  RDFISEQKFQEYQETCRNLLPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKAYPDLNET 115

Query: 970 FRDF 981
            + F
Sbjct: 116 LKHF 119



 Score = 96.3 bits (238), Expect = 5e-20
 Identities = 49/123 (39%), Positives = 81/123 (65%)
 Frame = +1

Query: 706  IFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSE 885
            + + F   KV+I+  I +PFPF   LRD+SFI E+MY+  LEAC+NLVP+ +V++++L+ 
Sbjct: 246  LLQHFIYMKVNITYAINKPFPFFEALRDKSFITERMYKESLEACQNLVPLSKVVHNILTS 305

Query: 886  LEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGR 1065
            LE+ F  +VL  LFS +NL+ YP L  IFR F+   + + ++   ++ ++++M +   G 
Sbjct: 306  LEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRN--VSSRDHPRKDKEDSREMPHSPSGP 363

Query: 1066 EQV 1074
            E V
Sbjct: 364  ESV 366


>ref|XP_003085583.1| PREDICTED: sp110 nuclear body protein-like [Mus musculus].
          Length = 263

 Score =  137 bits (346), Expect = 2e-32
 Identities = 70/148 (47%), Positives = 101/148 (68%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF   +L+ +FS  +LKAYPDL + 
Sbjct: 56   RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSWDLLKVIFSKTHLKAYPDLKET 115

Query: 970  FRDFKKMILENFNYQITNEGETKDMINL 1053
             + F        N   TN+ + ++M++L
Sbjct: 116  LKHF------FLNASKTNDEQAEEMLSL 137


>ref|NP_998780.2| SP140 nuclear body protein family member [Mus musculus].
          Length = 211

 Score =  137 bits (345), Expect = 2e-32
 Identities = 68/148 (45%), Positives = 100/148 (67%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI EQ ++ + E C+NL PVERV+YD+LS ++KKF R +L+ +FS  +LK YPDL + 
Sbjct: 56   RDFISEQKFQEYQETCKNLAPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKVYPDLKET 115

Query: 970  FRDFKKMILENFNYQITNEGETKDMINL 1053
             + F        N   TN+ + ++M++L
Sbjct: 116  LKHF------FLNASKTNDEQAEEMLSL 137


>ref|NP_001013839.1| SP140 nuclear body protein family member [Mus musculus].
          Length = 534

 Score =  137 bits (344), Expect = 3e-32
 Identities = 69/145 (47%), Positives = 99/145 (68%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGYNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI EQ ++ + E C+NLVPVERV+YD+LS ++KKF R +L+ +FS  +LKAYPDL + 
Sbjct: 56   RDFISEQKFQEYQETCKNLVPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKAYPDLKET 115

Query: 970  FRDFKKMILENFNYQITNEGETKDM 1044
             + F        N   TN+ + ++M
Sbjct: 116  LKHF------FLNASKTNDEQAEEM 134


>ref|XP_003085580.1| PREDICTED: interferon-induced protein 75-like [Mus musculus].
          Length = 480

 Score =  136 bits (342), Expect = 5e-32
 Identities = 63/124 (50%), Positives = 92/124 (74%)
 Frame = +1

Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
           M+ G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1   MSGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
           R FI EQ ++ + E CRNL+PV+RV+YD+LS ++KKF R +L+ +FS  +LKAYPDL++ 
Sbjct: 56  RDFISEQKFQEYXETCRNLLPVDRVVYDILSNVQKKFSRDLLKVIFSKTHLKAYPDLNET 115

Query: 970 FRDF 981
            + F
Sbjct: 116 LKHF 119



 Score = 98.6 bits (244), Expect = 1e-20
 Identities = 50/123 (40%), Positives = 82/123 (66%)
 Frame = +1

Query: 706  IFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSE 885
            + + F   KV+I+  I +PFPF   LRD+SFI E+MY+  LEAC+NLVP+ +V++++L+ 
Sbjct: 230  LLQHFIYMKVNITYAINKPFPFFEALRDKSFITERMYKESLEACQNLVPLSKVVHNILTS 289

Query: 886  LEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGR 1065
            LE+ F  +VL  LFS +NL+ YP L  IFR F+   + + ++Q  ++ ++++M +   G 
Sbjct: 290  LEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRN--VSSRDHQRKDKEDSREMPHSPSGP 347

Query: 1066 EQV 1074
            E V
Sbjct: 348  ESV 350


>ref|XP_001475769.2| PREDICTED: sp110 nuclear body protein-like isoform 1 [Mus musculus].
          Length = 291

 Score =  135 bits (341), Expect = 6e-32
 Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 1/223 (0%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF   +L+ +FS  +LKAYPDL   
Sbjct: 56   RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSWDLLKVIFSKTHLKAYPDL--- 112

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQ-PR 1146
                 K  L++F   +++   T   IN +   E+  L     + +     +    L  P+
Sbjct: 113  -----KETLKHFFLNVSDSHRTHQRINGRNVEERPRLPSVVREASKTNDEQAEEMLSLPQ 167

Query: 1147 DRQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKR 1275
               G  ++  E +  EQ       PQ   P S    A  R KR
Sbjct: 168  CNGGEGSSSCEQTRDEQ------EPQDDLPSSLRQEAARRKKR 204


>ref|XP_003085581.1| PREDICTED: nuclear body protein SP140-like [Mus musculus].
          Length = 211

 Score =  135 bits (340), Expect = 8e-32
 Identities = 68/148 (45%), Positives = 100/148 (67%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MA G ++LS RT      PE+Q+ +E    +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1    MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            + FI EQ ++ + E C+NLVPVERVMYD+LS ++KKF R +L+ +FS  +LK Y DL + 
Sbjct: 56   QDFISEQKFQEYQETCKNLVPVERVMYDILSNVQKKFSRDLLKVIFSQTHLKVYRDLKET 115

Query: 970  FRDFKKMILENFNYQITNEGETKDMINL 1053
             + F        N   TN+ + ++M++L
Sbjct: 116  LKHF------FLNASKTNDEQAEEMLSL 137


>ref|NP_038701.2| nuclear autoantigen Sp-100 [Mus musculus].
          Length = 591

 Score =  110 bits (274), Expect = 4e-24
 Identities = 62/147 (42%), Positives = 85/147 (57%)
 Frame = +1

Query: 622  GSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFI 801
            GSD S R  T      EQ + E    E + + F+  KV IS+ I   FPFL  LRD  FI
Sbjct: 3    GSDGSPRMST------EQENTEMHLIECMLKHFKTQKVAISNAIRSTFPFLESLRDHEFI 56

Query: 802  PEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDF 981
              +MYE  L++CR+LVPV++V+Y  L ELEKKFD TVL  LF+ +N++ YPDL+ I R F
Sbjct: 57   TGKMYEDLLDSCRSLVPVDKVIYRALEELEKKFDMTVLCELFNEVNMEKYPDLNLIRRSF 116

Query: 982  KKMILENFNYQITNEGETKDMINLQLG 1062
              +      +Q  + G     ++L+ G
Sbjct: 117  GCVFPNELCFQGIDGGNPNSQLSLEQG 143


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,365,051
Number of extensions: 1396428
Number of successful extensions: 4652
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4631
Number of HSP's successfully gapped: 17
Length of query: 477
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 372
Effective length of database: 12,463,779
Effective search space: 4636525788
Effective search space used: 4636525788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007417
         (1432 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003133754.1| PREDICTED: nuclear body protein SP140-like [...   505   e-143
Alignment   gi|XP_003133755.1| PREDICTED: nuclear autoantigen Sp-100-like [...   147   2e-35
Alignment   gi|XP_003133766.2| PREDICTED: sp110 nuclear body protein-like [...   104   1e-22

>ref|XP_003133754.1| PREDICTED: nuclear body protein SP140-like [Sus scrofa].
          Length = 752

 Score =  505 bits (1301), Expect = e-143
 Identities = 251/264 (95%), Positives = 253/264 (95%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD
Sbjct: 1    MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 60

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI
Sbjct: 61   RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 120

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD 1149
            FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD
Sbjct: 121  FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD 180

Query: 1150 RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPLYKEVTC 1329
            RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLP  KEVTC
Sbjct: 181  RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPYNKEVTC 240

Query: 1330 DSKAPQMTHQGRIPGGAQPITSKG 1401
            DSKAPQ+THQG    G     +KG
Sbjct: 241  DSKAPQITHQGESKEGLSLSPAKG 264



 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 23/25 (92%), Positives = 25/25 (100%)
 Frame = +2

Query: 1358 RGESQEGLSLSPAKGVEDSSTCWET 1432
            +GES+EGLSLSPAKGVEDSSTCWET
Sbjct: 250  QGESKEGLSLSPAKGVEDSSTCWET 274


>ref|XP_003133755.1| PREDICTED: nuclear autoantigen Sp-100-like [Sus scrofa].
          Length = 386

 Score =  147 bits (370), Expect = 2e-35
 Identities = 73/154 (47%), Positives = 107/154 (69%)
 Frame = +1

Query: 610  MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
            MASGG +L  R      + E +++D++   E++F  F+ +KV+IS+ I +PFPFL GLRD
Sbjct: 1    MASGGRELRTR-----MSVETRNTDDELIYEIVFNHFKRHKVEISNAIKKPFPFLEGLRD 55

Query: 790  RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
            R  I  +MYE F ++CRNLVPV RV+Y VLSELEK FD  +LEALFS +N++ YPDL+QI
Sbjct: 56   RELITNKMYEDFQDSCRNLVPVPRVVYKVLSELEKIFDLPLLEALFSEVNMQEYPDLNQI 115

Query: 970  FRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
            ++ F+ +I E  N++  +  E ++  N+QL  +Q
Sbjct: 116  YKSFENVIQEKLNHEEGDREEREERPNVQLRLQQ 149


>ref|XP_003133766.2| PREDICTED: sp110 nuclear body protein-like [Sus scrofa].
          Length = 648

 Score =  104 bits (259), Expect = 1e-22
 Identities = 48/98 (48%), Positives = 67/98 (68%)
 Frame = +1

Query: 700 ELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVL 879
           E +F+ F   K++I+  I +PFPF  GLRD +FI + +Y   LEACRNLVPV RV+Y++L
Sbjct: 17  EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 76

Query: 880 SELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMI 993
           ++LEK F  + LE LF  INL  YP L  +F+ FK ++
Sbjct: 77  TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 114


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,312,491
Number of extensions: 1051653
Number of successful extensions: 3824
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3815
Number of HSP's successfully gapped: 4
Length of query: 477
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 374
Effective length of database: 8,779,541
Effective search space: 3283548334
Effective search space used: 3283548334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007417
         (1432 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr15                                                        1130   0.0  

>Sscrofa_Chr15 
||          Length = 157681621

 Score = 1130 bits (570), Expect = 0.0
 Identities = 626/642 (97%), Gaps = 2/642 (0%)
 Strand = Plus / Plus

                                                                             
Query: 1         ggcttgcacatcggcttctctgcccaaactcagcactcattctggttgcaggagttgaga 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911367 ggcttgcacatcggcttctctgcccaaactcagcactcattctggttgcaggagttgaga 144911426

                                                                             
Query: 61        ggattttctggcctctggctcttttccagaaacgtgaagaacatgctccccagcatttcg 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911427 ggattttctggcctctggctcttttccagaaacgtgaagaacatgctccccagcatttcg 144911486

                                                                             
Query: 121       gttctttccagttctgtgtctgaacaccggttctgactcatccagttcaggatccctgcg 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911487 gttctttccagttctgtgtctgaacaccggttctgactcatccagttcaggatccctgcg 144911546

                                                                             
Query: 181       gtgtcccgggggcgaaaaggaaatctgagaattctggcttcgttttgttttccttgaagg 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911547 gtgtcccgggggcgaaaaggaaatctgagaattctggcttcgttttgttttccttgaagg 144911606

                                                                             
Query: 241       ggacagaggcaaacatggagcttctttcctccctgccaaccctatgccacttcccctcaa 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911607 ggacagaggcaaacatggagcttctttcctccctgccaaccctatgccacttcccctcaa 144911666

                                                                             
Query: 301       aacacacttgatctgtttgagttcaagacactctcccggccctctctcctttgcaggaac 360
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911667 aacacacttgatctgtttgagttcaagacactctcccggccctctctcctttgcaggaac 144911726

                                                                             
Query: 361       cagtggctggctcttcccggagcgctgagaacccgccctctcctcccctggggccgagat 420
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911727 cagtggctggctcttcccggagcgctgagaacccgccctctcctcccctggggccgagat 144911786

                                                                             
Query: 421       tgggtggagggaagatggacgtggtggtgcggccacgcacgtcacgctgttgagc-attg 479
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct: 144911787 tgggtggagggaagatggacgtggtggtgcggccacgcacgtcacgctgttgagcaattt 144911846

                                                                             
Query: 480       aacggactgtgcagagctgaagatgctgcacccgagggatcgatagaggcagactttgtt 539
                  ||    | |   |   |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911847 cac-ttttcttttgccttttagatgctgcacccgagggatcgatagaggcagactttgtt 144911905

                                                                             
Query: 540       gtcagtgttcccagaaaggacagaggcagtgaacatctcatcaatagccatcttaggcgg 599
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911906 gtcagtgttcccagaaaggacagaggcagtgaacatctcatcaatagccatcttaggcgg 144911965

                                                           
Query: 600       gcctgagaagatggcaagtggaggcagcgacctcagctgcag 641
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911966 gcctgagaagatggcaagtggaggcagcgacctcagctgcag 144912007



 Score =  359 bits (181), Expect = 3e-96
 Identities = 181/181 (100%)
 Strand = Plus / Plus

                                                                             
Query: 639       cagaactttcacaggctaccagaacccagaggaacagagctcagatgagcagttttttaa 698
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144918065 cagaactttcacaggctaccagaacccagaggaacagagctcagatgagcagttttttaa 144918124

                                                                             
Query: 699       tgagctgattttcaggttcttcagagaaaataaggtggacatttcaagtgtaataacaca 758
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144918125 tgagctgattttcaggttcttcagagaaaataaggtggacatttcaagtgtaataacaca 144918184

                                                                             
Query: 759       gccctttcctttccttatgggcctccgggaccggagcttcatccctgagcagatgtatga 818
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144918185 gccctttcctttccttatgggcctccgggaccggagcttcatccctgagcagatgtatga 144918244

                  
Query: 819       a 819
                 |
Sbjct: 144918245 a 144918245



 Score =  321 bits (162), Expect = 6e-85
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                             
Query: 820       cactttctggaagcatgcagaaatctagtcccggtggagagagtgatgtatgatgttctc 879
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144919360 cactttctggaagcatgcagaaatctagtcccggtggagagagtgatgtatgatgttctc 144919419

                                                                             
Query: 880       agtgaactggagaagaaatttgaccggacagttctggaagctctattcagcagcattaac 939
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144919420 agtgaactggagaagaaatttgaccggacagttctggaagctctattcagcagcattaac 144919479

                                                           
Query: 940       ctgaaggcctatcctgacttacatcagattttcagagacttc 981
                 ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144919480 ctgaaggcctatcctgacttacatcagattttcagagacttc 144919521



 Score =  172 bits (87), Expect = 3e-40
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1071      agtgcccctggaacgtgcatctctccaaatgaataatataagagggttagaagatacacc 1130
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144926387 agtgcccctggaacgtgcatctctccaaatgaataatataagagggttagaagatacacc 144926446

                                            
Query: 1131      cagattacagccacgtgacagacaagg 1157
                 |||||||||||||||||||||||||||
Sbjct: 144926447 cagattacagccacgtgacagacaagg 144926473



 Score =  167 bits (84), Expect = 2e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                             
Query: 989       tgattcttgaaaacttcaactaccaaatcacgaatgaaggagagacaaaggacatgatca 1048
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144922103 tgattcttgaaaacttcaactaccaaatcacgaatgaaggagagacaaaggacatgatca 144922162

                                         
Query: 1049      acttacagttgggccgtgaacaag 1072
                 ||||||||||||||||||||||||
Sbjct: 144922163 acttacagttgggccgtgaacaag 144922186



 Score =  165 bits (83), Expect = 8e-38
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1155      aggggtcagcaatgccctgttggagaccagtgctggagaacagaccctggaaaccttgag 1214
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144934906 aggggtcagcaatgccctgttggagaccagtgctggagaacagaccctggaaaccttgag 144934965

                                        
Query: 1215      atccccacaaagatattggccag 1237
                 |||||||||||||||||||||||
Sbjct: 144934966 atccccacaaagatattggccag 144934988



 Score =  147 bits (74), Expect = 2e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1236      agtgtcctgcaaccccgcagctctaccacgtggtaaaagaggaaaatcagaagaaacgct 1295
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144937240 agtgtcctgcaaccccgcagctctaccacgtggtaaaagaggaaaatcagaagaaacgct 144937299

                               
Query: 1296      cgggtggctccctt 1309
                 ||||||||||||||
Sbjct: 144937300 cgggtggctccctt 144937313



 Score =  141 bits (71), Expect = 1e-30
 Identities = 84/87 (96%), Gaps = 1/87 (1%)
 Strand = Plus / Plus

                                                                             
Query: 1320      agtgacctgtgattccaaagctcctcaaatgactcaccaggggagaatcccaggaggggc 1379
                 |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 144939205 agtgacctgtgattccaaagctcctcaaataactcaccaggg-agaatccaaggaggggc 144939263

                                            
Query: 1380      tcagcctatcaccagcaaagggagtag 1406
                 |||||||||||||||||||||||||||
Sbjct: 144939264 tcagcctatcaccagcaaagggagtag 144939290


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,872,518
Number of extensions: 281
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 9
Length of query: 1432
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1411
Effective length of database: 2,808,413,156
Effective search space: 3962670963116
Effective search space used: 3962670963116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)