Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007417
(1432 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068915.1| SP140 nuclear body protein [Bos taurus]. 241 9e-64
Alignment gi|XP_002685721.1| PREDICTED: nuclear antigen Sp100-like [Bos t... 130 2e-30
Alignment gi|XP_001789492.2| PREDICTED: nuclear antigen Sp100-like [Bos t... 130 2e-30
Alignment gi|NP_001124237.1| hypothetical protein LOC100139208 [Bos tauru... 122 6e-28
Alignment gi|XP_001788173.1| PREDICTED: SP110 nuclear body protein [Bos t... 94 4e-19
>ref|NP_001068915.1| SP140 nuclear body protein [Bos taurus].
Length = 411
Score = 241 bits (616), Expect = 9e-64
Identities = 138/268 (51%), Positives = 166/268 (61%), Gaps = 7/268 (2%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MAS GS +CR T QN EEQ +EQ E IF F+E KV+I+ I +PFPFLMGLRD
Sbjct: 1 MASAGSPSNCRMITEDQNLEEQHLEEQLCYEFIFMLFKEKKVEIAGAILKPFPFLMGLRD 60
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI E MY+ F EACRNLVPVERV Y+ L ELEKKFD+TVLEALFS +NLKAYPDL QI
Sbjct: 61 RGFISEPMYQDFQEACRNLVPVERVAYNALDELEKKFDKTVLEALFSKVNLKAYPDLLQI 120
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD 1149
+F+ I + F YQI +EGETK+M+N QL EQV LE + LQMN++RG E PRL P +
Sbjct: 121 CNNFQNAIRDKFYYQILDEGETKEMLNSQLNHEQVSLEHSPLQMNSVRGFESMPRLLPYN 180
Query: 1150 RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPLYKE--- 1320
RQ SNA E E E RY PV+ +P A G+ +E L LP E
Sbjct: 181 RQENSNAWDE----EWPQEASSFSPRYVPVTSDPKAPQVPPEGEPKEVLSLLPAEGEEDN 236
Query: 1321 ----VTCDSKAPQMTHQGRIPGGAQPIT 1392
V C+ + PQ P +P+T
Sbjct: 237 NACCVICEEEEPQEALSS--PSRCEPVT 262
>ref|XP_002685721.1| PREDICTED: nuclear antigen Sp100-like [Bos taurus].
Length = 422
Score = 130 bits (328), Expect = 2e-30
Identities = 69/150 (46%), Positives = 100/150 (66%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G +LS R + E+Q+ D + F E +FR F+ +KV IS+ I + FPF GL D
Sbjct: 1 MAGEGRELSTR-----MSLEDQNIDNRLF-ETVFRHFKRHKVQISNAIKKTFPFFEGLHD 54
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
I +MYE ++CRNLVPV RV+Y+VLSELEK F+ ++LEA+FS +N++ YPDL+ I
Sbjct: 55 NELITSKMYEDCQDSCRNLVPVSRVVYNVLSELEKTFNPSLLEAVFSEVNMQEYPDLNNI 114
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQL 1059
++ F+K+I E NY+ +N G+ + I L L
Sbjct: 115 YKSFEKVIQEKINYEESN-GQKRPTIQLSL 143
>ref|XP_001789492.2| PREDICTED: nuclear antigen Sp100-like [Bos taurus].
Length = 422
Score = 130 bits (328), Expect = 2e-30
Identities = 69/150 (46%), Positives = 100/150 (66%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G +LS R + E+Q+ D + F E +FR F+ +KV IS+ I + FPF GL D
Sbjct: 1 MAGEGRELSTR-----MSLEDQNIDNRLF-ETVFRHFKRHKVQISNAIKKTFPFFEGLHD 54
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
I +MYE ++CRNLVPV RV+Y+VLSELEK F+ ++LEA+FS +N++ YPDL+ I
Sbjct: 55 NELITSKMYEDCQDSCRNLVPVSRVVYNVLSELEKTFNPSLLEAVFSEVNMQEYPDLNNI 114
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQL 1059
++ F+K+I E NY+ +N G+ + I L L
Sbjct: 115 YKSFEKVIQEKINYEESN-GQKRPTIQLSL 143
>ref|NP_001124237.1| hypothetical protein LOC100139208 [Bos taurus].
Length = 123
Score = 122 bits (307), Expect = 6e-28
Identities = 61/125 (48%), Positives = 89/125 (71%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA GS+LS R T E Q+++++ E IFR F+ +KV+IS+ I + FPF GLRD
Sbjct: 1 MAGEGSELSTRMST-----ENQNTEDRLVFETIFRHFKRHKVEISTAIKKTFPFFEGLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R I +MYE ++CRNLVPV +V+Y+VLSELEK F++++LEALFS +N++ YPDL+ +
Sbjct: 56 RELITNKMYEDCQDSCRNLVPVPKVVYNVLSELEKTFNQSLLEALFSDVNMQEYPDLNHV 115
Query: 970 FRDFK 984
+ F+
Sbjct: 116 RKSFE 120
>ref|XP_001788173.1| PREDICTED: SP110 nuclear body protein [Bos taurus].
Length = 678
Score = 93.6 bits (231), Expect = 4e-19
Identities = 42/96 (43%), Positives = 64/96 (66%)
Frame = +1
Query: 706 IFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSE 885
+ + F + K++I+ I +PFPF GLRD FI E++Y +EAC NLVP+ RV+Y++L++
Sbjct: 9 LLQHFIQQKLEIAYAINKPFPFFEGLRDNFFITERLYRESMEACENLVPLSRVVYNILTQ 68
Query: 886 LEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMI 993
LEK F + L+ LFS INL YP+L F +++
Sbjct: 69 LEKTFSLSFLKILFSQINLNEYPNLITTLNSFTRVV 104
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,923,630
Number of extensions: 1629792
Number of successful extensions: 5791
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5784
Number of HSP's successfully gapped: 5
Length of query: 477
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,174,046
Effective search space: 5258571066
Effective search space used: 5258571066
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007417
(1432 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852450.1| PREDICTED: similar to SP140 nuclear body protei... 241 1e-63
Alignment gi|XP_534598.2| PREDICTED: similar to Nuclear autoantigen Sp-10... 132 8e-31
>ref|XP_852450.1| PREDICTED: similar to SP140 nuclear body protein isoform 1 [Canis
familiaris].
Length = 763
Score = 241 bits (615), Expect = 1e-63
Identities = 133/242 (54%), Positives = 169/242 (69%), Gaps = 5/242 (2%)
Frame = +1
Query: 649 TGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFL 828
TG QNPE+Q S+EQ F E IFR F+ENKV+I+S I +PFP LMGLRDR FIPEQM++HF
Sbjct: 3 TGSQNPEDQMSEEQVFYEFIFRLFKENKVEIASAIKKPFPLLMGLRDRGFIPEQMFQHFQ 62
Query: 829 EACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFN 1008
EACRNLVPVERV+YDVLSELEK FD+TVL+ALFS++NLKAYPDL +I R F+ +I +NF+
Sbjct: 63 EACRNLVPVERVIYDVLSELEKTFDKTVLDALFSNLNLKAYPDLLEICRSFQNVIRDNFH 122
Query: 1009 YQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRDRQGVS---NALLE 1179
Y+ +E ETK++++ Q+ + ER+ LQ+NNIRGLEDTP LQP + Q VS +
Sbjct: 123 YEAMDEEETKEVLHFQMHHKLESCERSLLQVNNIRGLEDTPSLQPHEGQ-VSCEHESPQR 181
Query: 1180 TSAG--EQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPLYKEVTCDSKAPQMT 1353
TS G E+ E L N AL + G+SEE L +EVTCD P MT
Sbjct: 182 TSGGDIEEIHELLPG---------NGGALQMDEGGESEEMSRLLLYDREVTCDPGVPSMT 232
Query: 1354 HQ 1359
++
Sbjct: 233 NE 234
>ref|XP_534598.2| PREDICTED: similar to Nuclear autoantigen Sp-100 (Speckled 100 kDa)
(Nuclear dot-associated Sp100 protein) (Lysp100b) [Canis
familiaris].
Length = 835
Score = 132 bits (332), Expect = 8e-31
Identities = 63/135 (46%), Positives = 95/135 (70%)
Frame = +1
Query: 667 EEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNL 846
E+Q+ +E+ E +F+ F+ KV+ISS I +PFPF GLRDR I +MYE E+CRNL
Sbjct: 55 EDQNIEEKLVYETLFKHFKRYKVEISSAIKKPFPFFEGLRDRELITNKMYEDCQESCRNL 114
Query: 847 VPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNE 1026
+PV++V+Y+VL+ELEK F+ +LEALFS +N++ YPDL+ I+R+F+ ++ E +Y + E
Sbjct: 115 IPVQKVVYNVLNELEKTFNLPLLEALFSEVNVQEYPDLNGIYRNFEHVVQEKIHYGESYE 174
Query: 1027 GETKDMINLQLGREQ 1071
E + N+Q EQ
Sbjct: 175 EEVDENPNIQRSLEQ 189
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,404,215
Number of extensions: 1690709
Number of successful extensions: 5981
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5975
Number of HSP's successfully gapped: 2
Length of query: 477
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 370
Effective length of database: 15,307,552
Effective search space: 5663794240
Effective search space used: 5663794240
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007417
(1432 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_009168.4| nuclear body protein SP140 isoform 1 [Homo sapi... 191 2e-48
Alignment gi|NP_001005176.1| nuclear body protein SP140 isoform 2 [Homo s... 162 7e-40
Alignment gi|NP_001193632.1| nuclear autoantigen Sp-100 isoform 5 [Homo s... 145 9e-35
Alignment gi|NP_001193631.1| nuclear autoantigen Sp-100 isoform 4 [Homo s... 135 7e-32
Alignment gi|NP_001193630.1| nuclear autoantigen Sp-100 isoform 3 [Homo s... 135 7e-32
Alignment gi|NP_001073860.1| nuclear autoantigen Sp-100 isoform 1 [Homo s... 135 7e-32
Alignment gi|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapi... 135 7e-32
Alignment gi|NP_001193633.1| nuclear autoantigen Sp-100 isoform 6 [Homo s... 132 6e-31
Alignment gi|NP_612411.4| nuclear body protein SP140-like protein [Homo s... 132 1e-30
Alignment gi|NP_004500.3| sp110 nuclear body protein isoform a [Homo sapi... 99 7e-21
>ref|NP_009168.4| nuclear body protein SP140 isoform 1 [Homo sapiens].
Length = 867
Score = 191 bits (484), Expect = 2e-48
Identities = 120/242 (49%), Positives = 138/242 (57%), Gaps = 4/242 (1%)
Frame = +1
Query: 595 GGPEKMASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFL 774
G +MASG S+L+ R QN E Q+ EQ E IFRFFRENKV+I+S IT+PFPFL
Sbjct: 5 GQQGQMASGDSNLNFRMVAEIQNVEGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFL 64
Query: 775 MGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYP 954
MGLRDRSFI EQMYEHF EA RNLVPV RVMY VLSELEK F + LEALFS INL AYP
Sbjct: 65 MGLRDRSFISEQMYEHFQEAFRNLVPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYP 124
Query: 955 DLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPR 1134
DL++I+R F + V E + LQMNN+ LED PR
Sbjct: 125 DLNEIYRSF----------------------------QNVCYEHSPLQMNNVNDLEDRPR 156
Query: 1135 LQPRDRQGVSNALLETSAGEQTLETLRSPQRYWP----VSCNPAALPRGKRGKSEETLGW 1302
L P +Q SNA E E L S R P SC ALP+ G +E+
Sbjct: 157 LLPYGKQENSNACHEMDDIAVPQEALSSSPRCEPGFSSESCEQLALPKAGGGDAEDAPSL 216
Query: 1303 LP 1308
LP
Sbjct: 217 LP 218
>ref|NP_001005176.1| nuclear body protein SP140 isoform 2 [Homo sapiens].
Length = 172
Score = 162 bits (410), Expect = 7e-40
Identities = 87/130 (66%), Positives = 99/130 (76%)
Frame = +1
Query: 595 GGPEKMASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFL 774
G +MASG S+L+ R QN E Q+ EQ E IFRFFRENKV+I+S IT+PFPFL
Sbjct: 5 GQQGQMASGDSNLNFRMVAEIQNVEGQNLQEQVCPEPIFRFFRENKVEIASAITRPFPFL 64
Query: 775 MGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYP 954
MGLRDRSFI EQMYEHF EA RNLVPV RVMY VLSELEK F + LEALFS INL AYP
Sbjct: 65 MGLRDRSFISEQMYEHFQEAFRNLVPVTRVMYCVLSELEKTFGWSHLEALFSRINLMAYP 124
Query: 955 DLHQIFRDFK 984
DL++I+R F+
Sbjct: 125 DLNEIYRSFQ 134
>ref|NP_001193632.1| nuclear autoantigen Sp-100 isoform 5 [Homo sapiens].
Length = 452
Score = 145 bits (366), Expect = 9e-35
Identities = 74/154 (48%), Positives = 104/154 (67%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA GG DLS R FT E+Q D++ +++F+ F+ NKV+IS+ I + FPFL GLRD
Sbjct: 1 MAGGGGDLSTRMFT-----EDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R I +M+E ++CRNLVPV+RV+Y+VLSELEK F+ VLEALFS +N++ YPDL I
Sbjct: 56 RDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHI 115
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
++ F+ +I + Q + E E ++ LQL EQ
Sbjct: 116 YKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 149
>ref|NP_001193631.1| nuclear autoantigen Sp-100 isoform 4 [Homo sapiens].
Length = 480
Score = 135 bits (341), Expect = 7e-32
Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
MA GG DLS R +P E+Q D++ +++F+ F+ N
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 730 KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
KV+IS+ I + FPFL GLRDR I +M+E ++CRNLVPV+RV+Y+VLSELEK F+
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 910 VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
VLEALFS +N++ YPDL I++ F+ +I + Q + E E ++ LQL EQ
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174
>ref|NP_001193630.1| nuclear autoantigen Sp-100 isoform 3 [Homo sapiens].
Length = 688
Score = 135 bits (341), Expect = 7e-32
Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
MA GG DLS R +P E+Q D++ +++F+ F+ N
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 730 KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
KV+IS+ I + FPFL GLRDR I +M+E ++CRNLVPV+RV+Y+VLSELEK F+
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 910 VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
VLEALFS +N++ YPDL I++ F+ +I + Q + E E ++ LQL EQ
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174
>ref|NP_001073860.1| nuclear autoantigen Sp-100 isoform 1 [Homo sapiens].
Length = 885
Score = 135 bits (341), Expect = 7e-32
Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
MA GG DLS R +P E+Q D++ +++F+ F+ N
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 730 KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
KV+IS+ I + FPFL GLRDR I +M+E ++CRNLVPV+RV+Y+VLSELEK F+
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 910 VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
VLEALFS +N++ YPDL I++ F+ +I + Q + E E ++ LQL EQ
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174
>ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens].
Length = 879
Score = 135 bits (341), Expect = 7e-32
Identities = 73/174 (41%), Positives = 104/174 (59%), Gaps = 20/174 (11%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
MA GG DLS R +P E+Q D++ +++F+ F+ N
Sbjct: 1 MAGGGGDLSTRRLNECISPVANEMNHLPAHSHDLQRMFTEDQGVDDRLLYDIVFKHFKRN 60
Query: 730 KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
KV+IS+ I + FPFL GLRDR I +M+E ++CRNLVPV+RV+Y+VLSELEK F+
Sbjct: 61 KVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNLVPVQRVVYNVLSELEKTFNLP 120
Query: 910 VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
VLEALFS +N++ YPDL I++ F+ +I + Q + E E ++ LQL EQ
Sbjct: 121 VLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEEEEREERSGLQLSLEQ 174
>ref|NP_001193633.1| nuclear autoantigen Sp-100 isoform 6 [Homo sapiens].
Length = 445
Score = 132 bits (333), Expect = 6e-31
Identities = 64/135 (47%), Positives = 94/135 (69%)
Frame = +1
Query: 667 EEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNL 846
E+Q D++ +++F+ F+ NKV+IS+ I + FPFL GLRDR I +M+E ++CRNL
Sbjct: 5 EDQGVDDRLLYDIVFKHFKRNKVEISNAIKKTFPFLEGLRDRDLITNKMFEDSQDSCRNL 64
Query: 847 VPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNE 1026
VPV+RV+Y+VLSELEK F+ VLEALFS +N++ YPDL I++ F+ +I + Q + E
Sbjct: 65 VPVQRVVYNVLSELEKTFNLPVLEALFSDVNMQEYPDLIHIYKGFENVIHDKLPLQESEE 124
Query: 1027 GETKDMINLQLGREQ 1071
E ++ LQL EQ
Sbjct: 125 EEREERSGLQLSLEQ 139
>ref|NP_612411.4| nuclear body protein SP140-like protein [Homo sapiens].
Length = 580
Score = 132 bits (331), Expect = 1e-30
Identities = 74/178 (41%), Positives = 107/178 (60%), Gaps = 22/178 (12%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNP--------------------EEQSSDEQFFNELIFRFFREN 729
MA GGSDLS R G + E+Q DE + +F+ F+ +
Sbjct: 1 MAGGGSDLSTRGLNGGVSQVANEMNHLPAHSQSLQRLFTEDQDVDEGLVYDTVFKHFKRH 60
Query: 730 KVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRT 909
K++IS+ I + FPFL GLRDR I +M+E ++CRNLVPV+RV+Y+VLSELEK F+ +
Sbjct: 61 KLEISNAIKKTFPFLEGLRDRELITNKMFEDSEDSCRNLVPVQRVVYNVLSELEKTFNLS 120
Query: 910 VLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITN--EGETKDMINLQLGREQVP 1077
VLEALFS +N++ YPDL I++ FK I + ++Q ++ E E + I L L + +VP
Sbjct: 121 VLEALFSEVNMQEYPDLIHIYKSFKNAIQDKLSFQESDRKEREERPDIKLSLKQGEVP 178
>ref|NP_004500.3| sp110 nuclear body protein isoform a [Homo sapiens].
Length = 689
Score = 99.4 bits (246), Expect = 7e-21
Identities = 46/97 (47%), Positives = 69/97 (71%)
Frame = +1
Query: 700 ELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVL 879
E +F+ F K+ I+ I +PFPF GL D S I ++MY LEACRNL+PV RV++++L
Sbjct: 10 EALFQHFMHQKLGIAYAIHKPFPFFEGLLDNSIITKRMYMESLEACRNLIPVSRVVHNIL 69
Query: 880 SELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKM 990
++LE+ F+ ++L LFS INL+ YP+L I+R FK++
Sbjct: 70 TQLERTFNLSLLVTLFSQINLREYPNLVTIYRSFKRV 106
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,308,507
Number of extensions: 1658834
Number of successful extensions: 5850
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 5836
Number of HSP's successfully gapped: 13
Length of query: 477
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 371
Effective length of database: 14,802,980
Effective search space: 5491905580
Effective search space used: 5491905580
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007417
(1432 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032998.2| SP140 nuclear body protein family member iso... 141 1e-33
Alignment gi|NP_780428.1| SP140 nuclear body protein family member isofor... 139 4e-33
Alignment gi|XP_001475687.2| PREDICTED: interferon-induced protein 75-lik... 138 1e-32
Alignment gi|XP_003085583.1| PREDICTED: sp110 nuclear body protein-like [... 137 2e-32
Alignment gi|NP_998780.2| SP140 nuclear body protein family member [Mus m... 137 2e-32
Alignment gi|NP_001013839.1| SP140 nuclear body protein family member [Mu... 137 3e-32
Alignment gi|XP_003085580.1| PREDICTED: interferon-induced protein 75-lik... 136 5e-32
Alignment gi|XP_001475769.2| PREDICTED: sp110 nuclear body protein-like i... 135 6e-32
Alignment gi|XP_003085581.1| PREDICTED: nuclear body protein SP140-like [... 135 8e-32
Alignment gi|NP_038701.2| nuclear autoantigen Sp-100 [Mus musculus]. 110 4e-24
>ref|NP_001032998.2| SP140 nuclear body protein family member isoform 2 [Mus musculus].
Length = 263
Score = 141 bits (355), Expect = 1e-33
Identities = 71/148 (47%), Positives = 102/148 (68%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF R +L+ +FS +LKAYPDL +
Sbjct: 56 RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSRDLLKVIFSKTHLKAYPDLKET 115
Query: 970 FRDFKKMILENFNYQITNEGETKDMINL 1053
+ F N TN+ + ++M++L
Sbjct: 116 LKHF------FLNASKTNDEQAEEMLSL 137
>ref|NP_780428.1| SP140 nuclear body protein family member isoform 1 [Mus musculus].
Length = 291
Score = 139 bits (351), Expect = 4e-33
Identities = 87/223 (39%), Positives = 124/223 (55%), Gaps = 1/223 (0%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF R +L+ +FS +LKAYPDL
Sbjct: 56 RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSRDLLKVIFSKTHLKAYPDL--- 112
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQ-PR 1146
K L++F +++ T IN + E+ L + + + L P+
Sbjct: 113 -----KETLKHFFLNVSDSHRTHQRINGRNVEERPRLPSVVREASKTNDEQAEEMLSLPQ 167
Query: 1147 DRQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKR 1275
G ++ E + EQ PQ P S A R KR
Sbjct: 168 CNGGEGSSSCEQTCDEQ------EPQDDLPSSLRQEAARRKKR 204
>ref|XP_001475687.2| PREDICTED: interferon-induced protein 75-like [Mus musculus].
Length = 496
Score = 138 bits (347), Expect = 1e-32
Identities = 65/124 (52%), Positives = 92/124 (74%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E CRNL+PVERV+YD+LS ++KKF R +L+ +FS +LKAYPDL++
Sbjct: 56 RDFISEQKFQEYQETCRNLLPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKAYPDLNET 115
Query: 970 FRDF 981
+ F
Sbjct: 116 LKHF 119
Score = 96.3 bits (238), Expect = 5e-20
Identities = 49/123 (39%), Positives = 81/123 (65%)
Frame = +1
Query: 706 IFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSE 885
+ + F KV+I+ I +PFPF LRD+SFI E+MY+ LEAC+NLVP+ +V++++L+
Sbjct: 246 LLQHFIYMKVNITYAINKPFPFFEALRDKSFITERMYKESLEACQNLVPLSKVVHNILTS 305
Query: 886 LEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGR 1065
LE+ F +VL LFS +NL+ YP L IFR F+ + + ++ ++ ++++M + G
Sbjct: 306 LEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRN--VSSRDHPRKDKEDSREMPHSPSGP 363
Query: 1066 EQV 1074
E V
Sbjct: 364 ESV 366
>ref|XP_003085583.1| PREDICTED: sp110 nuclear body protein-like [Mus musculus].
Length = 263
Score = 137 bits (346), Expect = 2e-32
Identities = 70/148 (47%), Positives = 101/148 (68%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF +L+ +FS +LKAYPDL +
Sbjct: 56 RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSWDLLKVIFSKTHLKAYPDLKET 115
Query: 970 FRDFKKMILENFNYQITNEGETKDMINL 1053
+ F N TN+ + ++M++L
Sbjct: 116 LKHF------FLNASKTNDEQAEEMLSL 137
>ref|NP_998780.2| SP140 nuclear body protein family member [Mus musculus].
Length = 211
Score = 137 bits (345), Expect = 2e-32
Identities = 68/148 (45%), Positives = 100/148 (67%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E C+NL PVERV+YD+LS ++KKF R +L+ +FS +LK YPDL +
Sbjct: 56 RDFISEQKFQEYQETCKNLAPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKVYPDLKET 115
Query: 970 FRDFKKMILENFNYQITNEGETKDMINL 1053
+ F N TN+ + ++M++L
Sbjct: 116 LKHF------FLNASKTNDEQAEEMLSL 137
>ref|NP_001013839.1| SP140 nuclear body protein family member [Mus musculus].
Length = 534
Score = 137 bits (344), Expect = 3e-32
Identities = 69/145 (47%), Positives = 99/145 (68%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGYNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E C+NLVPVERV+YD+LS ++KKF R +L+ +FS +LKAYPDL +
Sbjct: 56 RDFISEQKFQEYQETCKNLVPVERVVYDILSNVQKKFSRDLLKVIFSKTHLKAYPDLKET 115
Query: 970 FRDFKKMILENFNYQITNEGETKDM 1044
+ F N TN+ + ++M
Sbjct: 116 LKHF------FLNASKTNDEQAEEM 134
>ref|XP_003085580.1| PREDICTED: interferon-induced protein 75-like [Mus musculus].
Length = 480
Score = 136 bits (342), Expect = 5e-32
Identities = 63/124 (50%), Positives = 92/124 (74%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
M+ G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MSGGNNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E CRNL+PV+RV+YD+LS ++KKF R +L+ +FS +LKAYPDL++
Sbjct: 56 RDFISEQKFQEYXETCRNLLPVDRVVYDILSNVQKKFSRDLLKVIFSKTHLKAYPDLNET 115
Query: 970 FRDF 981
+ F
Sbjct: 116 LKHF 119
Score = 98.6 bits (244), Expect = 1e-20
Identities = 50/123 (40%), Positives = 82/123 (66%)
Frame = +1
Query: 706 IFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVLSE 885
+ + F KV+I+ I +PFPF LRD+SFI E+MY+ LEAC+NLVP+ +V++++L+
Sbjct: 230 LLQHFIYMKVNITYAINKPFPFFEALRDKSFITERMYKESLEACQNLVPLSKVVHNILTS 289
Query: 886 LEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMILENFNYQITNEGETKDMINLQLGR 1065
LE+ F +VL LFS +NL+ YP L IFR F+ + + ++Q ++ ++++M + G
Sbjct: 290 LEQTFHPSVLLTLFSKVNLREYPSLVAIFRSFRN--VSSRDHQRKDKEDSREMPHSPSGP 347
Query: 1066 EQV 1074
E V
Sbjct: 348 ESV 350
>ref|XP_001475769.2| PREDICTED: sp110 nuclear body protein-like isoform 1 [Mus musculus].
Length = 291
Score = 135 bits (341), Expect = 6e-32
Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 1/223 (0%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R FI EQ ++ + E C+NLVPVERV+YDVLS ++KKF +L+ +FS +LKAYPDL
Sbjct: 56 RDFISEQKFQEYQETCKNLVPVERVVYDVLSNVQKKFSWDLLKVIFSKTHLKAYPDL--- 112
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQ-PR 1146
K L++F +++ T IN + E+ L + + + L P+
Sbjct: 113 -----KETLKHFFLNVSDSHRTHQRINGRNVEERPRLPSVVREASKTNDEQAEEMLSLPQ 167
Query: 1147 DRQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKR 1275
G ++ E + EQ PQ P S A R KR
Sbjct: 168 CNGGEGSSSCEQTRDEQ------EPQDDLPSSLRQEAARRKKR 204
>ref|XP_003085581.1| PREDICTED: nuclear body protein SP140-like [Mus musculus].
Length = 211
Score = 135 bits (340), Expect = 8e-32
Identities = 68/148 (45%), Positives = 100/148 (67%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MA G ++LS RT PE+Q+ +E +L+F+ F+ENKV+I+S IT+PFPFLM LRD
Sbjct: 1 MAGGDNELSSRTI-----PEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
+ FI EQ ++ + E C+NLVPVERVMYD+LS ++KKF R +L+ +FS +LK Y DL +
Sbjct: 56 QDFISEQKFQEYQETCKNLVPVERVMYDILSNVQKKFSRDLLKVIFSQTHLKVYRDLKET 115
Query: 970 FRDFKKMILENFNYQITNEGETKDMINL 1053
+ F N TN+ + ++M++L
Sbjct: 116 LKHF------FLNASKTNDEQAEEMLSL 137
>ref|NP_038701.2| nuclear autoantigen Sp-100 [Mus musculus].
Length = 591
Score = 110 bits (274), Expect = 4e-24
Identities = 62/147 (42%), Positives = 85/147 (57%)
Frame = +1
Query: 622 GSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRDRSFI 801
GSD S R T EQ + E E + + F+ KV IS+ I FPFL LRD FI
Sbjct: 3 GSDGSPRMST------EQENTEMHLIECMLKHFKTQKVAISNAIRSTFPFLESLRDHEFI 56
Query: 802 PEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQIFRDF 981
+MYE L++CR+LVPV++V+Y L ELEKKFD TVL LF+ +N++ YPDL+ I R F
Sbjct: 57 TGKMYEDLLDSCRSLVPVDKVIYRALEELEKKFDMTVLCELFNEVNMEKYPDLNLIRRSF 116
Query: 982 KKMILENFNYQITNEGETKDMINLQLG 1062
+ +Q + G ++L+ G
Sbjct: 117 GCVFPNELCFQGIDGGNPNSQLSLEQG 143
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,365,051
Number of extensions: 1396428
Number of successful extensions: 4652
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 4631
Number of HSP's successfully gapped: 17
Length of query: 477
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 372
Effective length of database: 12,463,779
Effective search space: 4636525788
Effective search space used: 4636525788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007417
(1432 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133754.1| PREDICTED: nuclear body protein SP140-like [... 505 e-143
Alignment gi|XP_003133755.1| PREDICTED: nuclear autoantigen Sp-100-like [... 147 2e-35
Alignment gi|XP_003133766.2| PREDICTED: sp110 nuclear body protein-like [... 104 1e-22
>ref|XP_003133754.1| PREDICTED: nuclear body protein SP140-like [Sus scrofa].
Length = 752
Score = 505 bits (1301), Expect = e-143
Identities = 251/264 (95%), Positives = 253/264 (95%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD
Sbjct: 1 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 60
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI
Sbjct: 61 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 120
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD 1149
FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD
Sbjct: 121 FRDFKKMILENFNYQITNEGETKDMINLQLGREQVPLERASLQMNNIRGLEDTPRLQPRD 180
Query: 1150 RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPLYKEVTC 1329
RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLP KEVTC
Sbjct: 181 RQGVSNALLETSAGEQTLETLRSPQRYWPVSCNPAALPRGKRGKSEETLGWLPYNKEVTC 240
Query: 1330 DSKAPQMTHQGRIPGGAQPITSKG 1401
DSKAPQ+THQG G +KG
Sbjct: 241 DSKAPQITHQGESKEGLSLSPAKG 264
Score = 52.4 bits (124), Expect = 6e-07
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +2
Query: 1358 RGESQEGLSLSPAKGVEDSSTCWET 1432
+GES+EGLSLSPAKGVEDSSTCWET
Sbjct: 250 QGESKEGLSLSPAKGVEDSSTCWET 274
>ref|XP_003133755.1| PREDICTED: nuclear autoantigen Sp-100-like [Sus scrofa].
Length = 386
Score = 147 bits (370), Expect = 2e-35
Identities = 73/154 (47%), Positives = 107/154 (69%)
Frame = +1
Query: 610 MASGGSDLSCRTFTGYQNPEEQSSDEQFFNELIFRFFRENKVDISSVITQPFPFLMGLRD 789
MASGG +L R + E +++D++ E++F F+ +KV+IS+ I +PFPFL GLRD
Sbjct: 1 MASGGRELRTR-----MSVETRNTDDELIYEIVFNHFKRHKVEISNAIKKPFPFLEGLRD 55
Query: 790 RSFIPEQMYEHFLEACRNLVPVERVMYDVLSELEKKFDRTVLEALFSSINLKAYPDLHQI 969
R I +MYE F ++CRNLVPV RV+Y VLSELEK FD +LEALFS +N++ YPDL+QI
Sbjct: 56 RELITNKMYEDFQDSCRNLVPVPRVVYKVLSELEKIFDLPLLEALFSEVNMQEYPDLNQI 115
Query: 970 FRDFKKMILENFNYQITNEGETKDMINLQLGREQ 1071
++ F+ +I E N++ + E ++ N+QL +Q
Sbjct: 116 YKSFENVIQEKLNHEEGDREEREERPNVQLRLQQ 149
>ref|XP_003133766.2| PREDICTED: sp110 nuclear body protein-like [Sus scrofa].
Length = 648
Score = 104 bits (259), Expect = 1e-22
Identities = 48/98 (48%), Positives = 67/98 (68%)
Frame = +1
Query: 700 ELIFRFFRENKVDISSVITQPFPFLMGLRDRSFIPEQMYEHFLEACRNLVPVERVMYDVL 879
E +F+ F K++I+ I +PFPF GLRD +FI + +Y LEACRNLVPV RV+Y++L
Sbjct: 17 EALFQHFIHQKLEIAYAINKPFPFFEGLRDNNFITDTLYRESLEACRNLVPVSRVVYNIL 76
Query: 880 SELEKKFDRTVLEALFSSINLKAYPDLHQIFRDFKKMI 993
++LEK F + LE LF INL YP L +F+ FK ++
Sbjct: 77 TKLEKTFSLSFLEMLFGHINLYEYPSLMAVFKSFKNVV 114
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,312,491
Number of extensions: 1051653
Number of successful extensions: 3824
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3815
Number of HSP's successfully gapped: 4
Length of query: 477
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 374
Effective length of database: 8,779,541
Effective search space: 3283548334
Effective search space used: 3283548334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007417
(1432 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr15 1130 0.0
>Sscrofa_Chr15
|| Length = 157681621
Score = 1130 bits (570), Expect = 0.0
Identities = 626/642 (97%), Gaps = 2/642 (0%)
Strand = Plus / Plus
Query: 1 ggcttgcacatcggcttctctgcccaaactcagcactcattctggttgcaggagttgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911367 ggcttgcacatcggcttctctgcccaaactcagcactcattctggttgcaggagttgaga 144911426
Query: 61 ggattttctggcctctggctcttttccagaaacgtgaagaacatgctccccagcatttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911427 ggattttctggcctctggctcttttccagaaacgtgaagaacatgctccccagcatttcg 144911486
Query: 121 gttctttccagttctgtgtctgaacaccggttctgactcatccagttcaggatccctgcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911487 gttctttccagttctgtgtctgaacaccggttctgactcatccagttcaggatccctgcg 144911546
Query: 181 gtgtcccgggggcgaaaaggaaatctgagaattctggcttcgttttgttttccttgaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911547 gtgtcccgggggcgaaaaggaaatctgagaattctggcttcgttttgttttccttgaagg 144911606
Query: 241 ggacagaggcaaacatggagcttctttcctccctgccaaccctatgccacttcccctcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911607 ggacagaggcaaacatggagcttctttcctccctgccaaccctatgccacttcccctcaa 144911666
Query: 301 aacacacttgatctgtttgagttcaagacactctcccggccctctctcctttgcaggaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911667 aacacacttgatctgtttgagttcaagacactctcccggccctctctcctttgcaggaac 144911726
Query: 361 cagtggctggctcttcccggagcgctgagaacccgccctctcctcccctggggccgagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911727 cagtggctggctcttcccggagcgctgagaacccgccctctcctcccctggggccgagat 144911786
Query: 421 tgggtggagggaagatggacgtggtggtgcggccacgcacgtcacgctgttgagc-attg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 144911787 tgggtggagggaagatggacgtggtggtgcggccacgcacgtcacgctgttgagcaattt 144911846
Query: 480 aacggactgtgcagagctgaagatgctgcacccgagggatcgatagaggcagactttgtt 539
|| | | | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911847 cac-ttttcttttgccttttagatgctgcacccgagggatcgatagaggcagactttgtt 144911905
Query: 540 gtcagtgttcccagaaaggacagaggcagtgaacatctcatcaatagccatcttaggcgg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911906 gtcagtgttcccagaaaggacagaggcagtgaacatctcatcaatagccatcttaggcgg 144911965
Query: 600 gcctgagaagatggcaagtggaggcagcgacctcagctgcag 641
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144911966 gcctgagaagatggcaagtggaggcagcgacctcagctgcag 144912007
Score = 359 bits (181), Expect = 3e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 639 cagaactttcacaggctaccagaacccagaggaacagagctcagatgagcagttttttaa 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144918065 cagaactttcacaggctaccagaacccagaggaacagagctcagatgagcagttttttaa 144918124
Query: 699 tgagctgattttcaggttcttcagagaaaataaggtggacatttcaagtgtaataacaca 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144918125 tgagctgattttcaggttcttcagagaaaataaggtggacatttcaagtgtaataacaca 144918184
Query: 759 gccctttcctttccttatgggcctccgggaccggagcttcatccctgagcagatgtatga 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144918185 gccctttcctttccttatgggcctccgggaccggagcttcatccctgagcagatgtatga 144918244
Query: 819 a 819
|
Sbjct: 144918245 a 144918245
Score = 321 bits (162), Expect = 6e-85
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 820 cactttctggaagcatgcagaaatctagtcccggtggagagagtgatgtatgatgttctc 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144919360 cactttctggaagcatgcagaaatctagtcccggtggagagagtgatgtatgatgttctc 144919419
Query: 880 agtgaactggagaagaaatttgaccggacagttctggaagctctattcagcagcattaac 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144919420 agtgaactggagaagaaatttgaccggacagttctggaagctctattcagcagcattaac 144919479
Query: 940 ctgaaggcctatcctgacttacatcagattttcagagacttc 981
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144919480 ctgaaggcctatcctgacttacatcagattttcagagacttc 144919521
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1071 agtgcccctggaacgtgcatctctccaaatgaataatataagagggttagaagatacacc 1130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144926387 agtgcccctggaacgtgcatctctccaaatgaataatataagagggttagaagatacacc 144926446
Query: 1131 cagattacagccacgtgacagacaagg 1157
|||||||||||||||||||||||||||
Sbjct: 144926447 cagattacagccacgtgacagacaagg 144926473
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 989 tgattcttgaaaacttcaactaccaaatcacgaatgaaggagagacaaaggacatgatca 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144922103 tgattcttgaaaacttcaactaccaaatcacgaatgaaggagagacaaaggacatgatca 144922162
Query: 1049 acttacagttgggccgtgaacaag 1072
||||||||||||||||||||||||
Sbjct: 144922163 acttacagttgggccgtgaacaag 144922186
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1155 aggggtcagcaatgccctgttggagaccagtgctggagaacagaccctggaaaccttgag 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144934906 aggggtcagcaatgccctgttggagaccagtgctggagaacagaccctggaaaccttgag 144934965
Query: 1215 atccccacaaagatattggccag 1237
|||||||||||||||||||||||
Sbjct: 144934966 atccccacaaagatattggccag 144934988
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1236 agtgtcctgcaaccccgcagctctaccacgtggtaaaagaggaaaatcagaagaaacgct 1295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144937240 agtgtcctgcaaccccgcagctctaccacgtggtaaaagaggaaaatcagaagaaacgct 144937299
Query: 1296 cgggtggctccctt 1309
||||||||||||||
Sbjct: 144937300 cgggtggctccctt 144937313
Score = 141 bits (71), Expect = 1e-30
Identities = 84/87 (96%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1320 agtgacctgtgattccaaagctcctcaaatgactcaccaggggagaatcccaggaggggc 1379
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||
Sbjct: 144939205 agtgacctgtgattccaaagctcctcaaataactcaccaggg-agaatccaaggaggggc 144939263
Query: 1380 tcagcctatcaccagcaaagggagtag 1406
|||||||||||||||||||||||||||
Sbjct: 144939264 tcagcctatcaccagcaaagggagtag 144939290
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,872,518
Number of extensions: 281
Number of successful extensions: 281
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 9
Length of query: 1432
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1411
Effective length of database: 2,808,413,156
Effective search space: 3962670963116
Effective search space used: 3962670963116
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)