Animal-Genome cDNA 20110601C-007435

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007435
         (2297 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [B...   627   e-179
Alignment   gi|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus].           88   3e-17
Alignment   gi|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus].           87   5e-17
Alignment   gi|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus].           82   3e-15
Alignment   gi|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus].           81   5e-15
Alignment   gi|NP_001193038.1| RNA-binding protein Nova-2 [Bos taurus].           54   8e-07

>ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus].
          Length = 464

 Score =  627 bits (1618), Expect = e-179
 Identities = 334/459 (72%), Positives = 335/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus].
          Length = 349

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus].
          Length = 361

 Score = 87.4 bits (215), Expect = 5e-17
 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+ +K +R +  A +++ + + PERI++I+   + I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
               EE +   + +  ATS+ P+                     LRL++  S        
Sbjct: 76  AYKFEEDIINSMSNSPATSKPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R V I G PD +++C+K I  ++ ESP KG  
Sbjct: 116 GGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGAT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus].
          Length = 356

 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  +        
Sbjct: 76  IDKLEEDINSSMTNSTAASRPPV--------------------TLRLVVPATQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  V EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP- 174

Query: 817 KGRAQ--PYDP 843
           +GR    PY P
Sbjct: 175 QGRVMTIPYQP 185


>ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus].
          Length = 403

 Score = 80.9 bits (198), Expect = 5e-15
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           LR+L+  K  G++IGK G+ +K +R   +A +++ + S PERI +I+     +   +  I
Sbjct: 20  LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79

Query: 475 IPTLEEGL-QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXX 651
              L+E L   P+       P                      LRL+I  S         
Sbjct: 80  AFKLDEDLCAAPANGGNVSRP-------------------PVTLRLVIPASQCGSLIGKA 120

Query: 652 XXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQ 831
                E+RE T   +++  +  P ST+R V + G PD ++ C++ I  +I ESP KG   
Sbjct: 121 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180

Query: 832 PYDPN 846
           PY P+
Sbjct: 181 PYHPS 185


>ref|NP_001193038.1| RNA-binding protein Nova-2 [Bos taurus].
          Length = 492

 Score = 53.5 bits (127), Expect = 8e-07
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 10/207 (4%)
 Frame = +1

Query: 223 KRPAEDMEEEQAFKRSRNTDEMVE--LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 396
           KRP E   E    KRS NT E  E  L++L+ S  AG++IGKGG+ I  L+ +  A++ +
Sbjct: 10  KRPLETPPEVVCTKRS-NTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 68

Query: 397 PDSSG-----PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECL 561
             S        ER+  +    E +  +   I   + E           Q   + + V  L
Sbjct: 69  SKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVRE---------IPQAMTKPEVVNIL 119

Query: 562 NYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKLFQECCPQS---TD 732
             Q     D   + +L++  S               + E +   ++L Q+  P+     +
Sbjct: 120 QPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK--PEGINLQE 177

Query: 733 RVVLIGGKPDRVVECIKIILDLISESP 813
           RVV + G+P++V + +  I+  + E P
Sbjct: 178 RVVTVSGEPEQVHKAVSAIVQKVQEDP 204


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 68,477,435
Number of extensions: 1790671
Number of successful extensions: 4177
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4155
Number of HSP's successfully gapped: 7
Length of query: 765
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 655
Effective length of database: 14,041,694
Effective search space: 9197309570
Effective search space used: 9197309570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007435
         (2297 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_857692.1| PREDICTED: similar to heterogeneous nuclear rib...   627   e-179
Alignment   gi|XP_857611.1| PREDICTED: similar to heterogeneous nuclear rib...   627   e-179
Alignment   gi|XP_857652.1| PREDICTED: similar to heterogeneous nuclear rib...   617   e-176
Alignment   gi|XP_857574.1| PREDICTED: similar to heterogeneous nuclear rib...   617   e-176
Alignment   gi|XP_857494.1| PREDICTED: similar to heterogeneous nuclear rib...   617   e-176
Alignment   gi|XP_857453.1| PREDICTED: similar to heterogeneous nuclear rib...   617   e-176
Alignment   gi|XP_857119.1| PREDICTED: similar to heterogeneous nuclear rib...   617   e-176
Alignment   gi|XP_533511.2| PREDICTED: similar to heterogeneous nuclear rib...   617   e-176
Alignment   gi|XP_538100.1| PREDICTED: similar to heterogeneous nuclear rib...   612   e-175
Alignment   gi|XP_857533.1| PREDICTED: similar to heterogeneous nuclear rib...   607   e-173

>ref|XP_857692.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform 29 [Canis familiaris].
          Length = 463

 Score =  627 bits (1617), Expect = e-179
 Identities = 334/463 (72%), Positives = 335/463 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYSGKFF 1551
            IKIDEPLEGSEDR            NAQYLLQNSVKQYSGKFF
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 463


>ref|XP_857611.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform 27 [Canis familiaris].
          Length = 463

 Score =  627 bits (1617), Expect = e-179
 Identities = 334/463 (72%), Positives = 335/463 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYSGKFF 1551
            IKIDEPLEGSEDR            NAQYLLQNSVKQYSGKFF
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 463


>ref|XP_857652.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 28 [Canis familiaris].
          Length = 464

 Score =  617 bits (1591), Expect = e-176
 Identities = 329/459 (71%), Positives = 331/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|XP_857574.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 26 [Canis familiaris].
          Length = 464

 Score =  617 bits (1591), Expect = e-176
 Identities = 329/459 (71%), Positives = 331/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|XP_857494.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 24 [Canis familiaris].
          Length = 464

 Score =  617 bits (1591), Expect = e-176
 Identities = 329/459 (71%), Positives = 331/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|XP_857453.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 23 [Canis familiaris].
          Length = 464

 Score =  617 bits (1591), Expect = e-176
 Identities = 329/459 (71%), Positives = 331/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|XP_857119.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 15 [Canis familiaris].
          Length = 464

 Score =  617 bits (1591), Expect = e-176
 Identities = 329/459 (71%), Positives = 331/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|XP_533511.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 1 [Canis familiaris].
          Length = 464

 Score =  617 bits (1591), Expect = e-176
 Identities = 329/459 (71%), Positives = 331/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|XP_538100.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform a isoform 1 [Canis familiaris].
          Length = 464

 Score =  612 bits (1577), Expect = e-175
 Identities = 327/459 (71%), Positives = 328/459 (71%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGK PAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKCPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKAL TDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALHTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP  TDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHPTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDKMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQM 
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMV 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTI KDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NA YLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRVITITGTQDQIQNAPYLLQNSVKQYA 459


>ref|XP_857533.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
            isoform 25 [Canis familiaris].
          Length = 456

 Score =  607 bits (1565), Expect = e-173
 Identities = 324/453 (71%), Positives = 325/453 (71%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             +   NTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQN 1521
            IKIDEPLEGSEDR            NAQYLLQN
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQN 453


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,386,747
Number of extensions: 1609240
Number of successful extensions: 4705
Number of sequences better than 1.0e-05: 71
Number of HSP's gapped: 4529
Number of HSP's successfully gapped: 86
Length of query: 765
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 654
Effective length of database: 15,174,208
Effective search space: 9923932032
Effective search space used: 9923932032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007435
         (2297 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isofo...   635   0.0  
Alignment   gi|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isofo...   625   e-179
Alignment   gi|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isofo...   625   e-179
Alignment   gi|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo s...    88   3e-17
Alignment   gi|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo s...    88   3e-17
Alignment   gi|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo s...    88   3e-17
Alignment   gi|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo s...    88   3e-17
Alignment   gi|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapi...    88   3e-17
Alignment   gi|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapi...    88   3e-17
Alignment   gi|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo s...    88   3e-17

>ref|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens].
          Length = 463

 Score =  635 bits (1639), Expect = 0.0
 Identities = 338/463 (73%), Positives = 338/463 (73%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYSGKFF 1551
            IKIDEPLEGSEDR            NAQYLLQNSVKQYSGKFF
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 463


>ref|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens].
          Length = 464

 Score =  625 bits (1613), Expect = e-179
 Identities = 333/459 (72%), Positives = 334/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens].
          Length = 464

 Score =  625 bits (1613), Expect = e-179
 Identities = 333/459 (72%), Positives = 334/459 (72%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            IKIDEPLEGSEDR            NAQYLLQNSVKQY+
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYA 459


>ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens].
          Length = 318

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens].
          Length = 335

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPV--------------------TLRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175

Query: 817 KGRAQPYDP 843
           KG   PY P
Sbjct: 176 KGVTIPYRP 184


>ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens].
          Length = 361

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens].
          Length = 365

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPV--------------------TLRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175

Query: 817 KGRAQPYDP 843
           KG   PY P
Sbjct: 176 KGVTIPYRP 184


>ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens].
          Length = 362

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens].
          Length = 366

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPV--------------------TLRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175

Query: 817 KGRAQPYDP 843
           KG   PY P
Sbjct: 176 KGVTIPYRP 184


>ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens].
          Length = 331

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,228,840
Number of extensions: 1578851
Number of successful extensions: 4383
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4345
Number of HSP's successfully gapped: 21
Length of query: 765
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 655
Effective length of database: 14,671,124
Effective search space: 9609586220
Effective search space used: 9609586220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007435
         (2297 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus ...   635   0.0  
Alignment   gi|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus mu...    88   3e-17
Alignment   gi|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus mu...    88   3e-17
Alignment   gi|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus muscu...    88   3e-17
Alignment   gi|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus mu...    88   3e-17
Alignment   gi|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus].            87   4e-17
Alignment   gi|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus].            82   2e-15
Alignment   gi|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus].            82   2e-15
Alignment   gi|NP_001025048.2| neuro-oncological ventral antigen 2 [Mus mus...    54   7e-07

>ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus].
          Length = 463

 Score =  635 bits (1639), Expect = 0.0
 Identities = 338/463 (73%), Positives = 338/463 (73%)
 Frame = +1

Query: 163  METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 342
            METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
Sbjct: 1    METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK 60

Query: 343  GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 522
            GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
Sbjct: 61   GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT 120

Query: 523  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKL 702
            SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKL
Sbjct: 121  SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL 180

Query: 703  FQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 882
            FQECCP STDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
Sbjct: 181  FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT 240

Query: 883  MMFDDRRGRPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXX 1062
            MMFDDRRGRPV                            YDDMS                
Sbjct: 241  MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG 300

Query: 1063 XSRARNXXXXXXXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMA 1242
             SRARN         RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMA
Sbjct: 301  GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA 360

Query: 1243 YEPQXXXXXXXXXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGAS 1422
            YEPQ                 DLGGPIITTQVTIPKDLA               HESGAS
Sbjct: 361  YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS 420

Query: 1423 IKIDEPLEGSEDRXXXXXXXXXXXXNAQYLLQNSVKQYSGKFF 1551
            IKIDEPLEGSEDR            NAQYLLQNSVKQYSGKFF
Sbjct: 421  IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 463


>ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus].
          Length = 331

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus].
          Length = 362

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus].
          Length = 349

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus].
          Length = 322

 Score = 88.2 bits (217), Expect = 3e-17
 Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPV--------------------TLRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPP 175

Query: 817 KGRAQPYDP 843
           KG   PY P
Sbjct: 176 KGVTIPYRP 184


>ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus].
          Length = 371

 Score = 87.4 bits (215), Expect = 4e-17
 Identities = 52/185 (28%), Positives = 91/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+ +K +R +  A +++ + + PERI++I+   + I +    I
Sbjct: 48  IRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMI 107

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
               EE +   + +  ATS+ P+                     LRL++  S        
Sbjct: 108 AYKFEEDIINSMSNSPATSKPPVT--------------------LRLVVPASQCGSLIGK 147

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R V I G PD +++C+K I  ++ ESP KG  
Sbjct: 148 GGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGAT 207

Query: 829 QPYDP 843
            PY P
Sbjct: 208 IPYRP 212


>ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus].
          Length = 403

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 53/184 (28%), Positives = 85/184 (46%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           LR+L+  K  G++IGK G+ +K +R   +A +++ + S PERI +I+     +   +  I
Sbjct: 20  LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79

Query: 475 IPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXX 654
              L+E L           P    +V          S     LRL+I  S          
Sbjct: 80  AFKLDEDL--------CAAPANGGSV----------SRPPVTLRLVIPASQCGSLIGKAG 121

Query: 655 XXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQP 834
               E+RE T   +++  +  P ST+R V + G PD ++ C++ I  +I ESP KG   P
Sbjct: 122 TKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATIP 181

Query: 835 YDPN 846
           Y P+
Sbjct: 182 YHPS 185


>ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus].
          Length = 356

 Score = 81.6 bits (200), Expect = 2e-15
 Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 8/191 (4%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  +        
Sbjct: 76  IDKLEEDINSSMTNSTAASRPPV--------------------TLRLVVPATQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  V EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP- 174

Query: 817 KGRAQ--PYDP 843
           +GR    PY P
Sbjct: 175 QGRVMTIPYQP 185


>ref|NP_001025048.2| neuro-oncological ventral antigen 2 [Mus musculus].
          Length = 492

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 10/207 (4%)
 Frame = +1

Query: 223 KRPAEDMEEEQAFKRSRNTDEMVE--LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV 396
           KRP E   E    KRS NT E  E  L++L+ S  AG++IGKGG+ I  L+ +  A++ +
Sbjct: 10  KRPLETPPEVVCTKRS-NTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKL 68

Query: 397 PDSSG-----PERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVECL 561
             S        ER+  +    E +  +   I   + E           Q   + + V  L
Sbjct: 69  SKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVRE---------IPQAMTKPEVVNIL 119

Query: 562 NYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKLFQECCPQS---TD 732
             Q     D   + +L++  S               + E +   ++L Q+  P+     +
Sbjct: 120 QPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQK--PEGINLQE 177

Query: 733 RVVLIGGKPDRVVECIKIILDLISESP 813
           RVV + G+P++V + +  I+  + E P
Sbjct: 178 RVVTVSGEPEQVHKAVSAIVQKVQEDP 204


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 59,082,857
Number of extensions: 1358811
Number of successful extensions: 3708
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3676
Number of HSP's successfully gapped: 9
Length of query: 765
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 656
Effective length of database: 12,343,635
Effective search space: 8097424560
Effective search space used: 8097424560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007435
         (2297 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003357758.1| PREDICTED: heterogeneous nuclear ribonucleop...   602   e-172
Alignment   gi|XP_003355457.1| PREDICTED: poly(rC)-binding protein 2 isofor...    88   2e-17
Alignment   gi|XP_003126241.1| PREDICTED: poly(rC)-binding protein 2 isofor...    88   2e-17
Alignment   gi|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [...    82   1e-15
Alignment   gi|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like i...    81   3e-15
Alignment   gi|XP_003354834.1| PREDICTED: poly(rC)-binding protein 1-like [...    74   5e-13
Alignment   gi|XP_003127279.2| PREDICTED: RNA-binding protein Nova-2 [Sus s...    54   4e-07
Alignment   gi|XP_003359061.1| PREDICTED: hypothetical protein LOC100624867...    50   7e-06

>ref|XP_003357758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Sus
            scrofa].
          Length = 466

 Score =  602 bits (1553), Expect = e-172
 Identities = 322/448 (71%), Positives = 324/448 (72%)
 Frame = +1

Query: 196  NTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTD 375
            +TETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTD
Sbjct: 14   HTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGKGGKNIKALRTD 73

Query: 376  YNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 555
            YNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE
Sbjct: 74   YNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTATSQLPLESDAVE 133

Query: 556  CLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELRENTQTTIKLFQECCPQSTDR 735
            CLNYQHYKGSDFDCELRLLIHQSL             ELRENTQTTIKLFQECCPQSTDR
Sbjct: 134  CLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPQSTDR 193

Query: 736  VVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV 915
            VVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV
Sbjct: 194  VVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPV 253

Query: 916  XXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDMSXXXXXXXXXXXXXXXXXSRARNXXXXX 1095
                                        YDDMS                 SRARN     
Sbjct: 254  GFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRGGSRARNLPLPP 313

Query: 1096 XXXXRGGDLMAXXXXXXXXXXXXXMVGFSADETWDSAIDTWSPSEWQMAYEPQXXXXXXX 1275
                RGGDLMA             MVGFSADETWDSAIDTWSPSEWQMAYEPQ       
Sbjct: 314  PPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMAYEPQGGSGYDY 373

Query: 1276 XXXXXXXXXXDLGGPIITTQVTIPKDLAXXXXXXXXXXXXXXXHESGASIKIDEPLEGSE 1455
                      DLGGPIITTQVTIPKDLA               HESGASIKIDEPLEGSE
Sbjct: 374  SYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSE 433

Query: 1456 DRXXXXXXXXXXXXNAQYLLQNSVKQYS 1539
            DR            NAQYLLQNSVKQY+
Sbjct: 434  DRIITITGTQDQIQNAQYLLQNSVKQYA 461


>ref|XP_003355457.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Sus scrofa].
          Length = 331

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|XP_003126241.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Sus scrofa].
          Length = 362

 Score = 88.2 bits (217), Expect = 2e-17
 Identities = 52/185 (28%), Positives = 92/185 (49%), Gaps = 2/185 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMI 75

Query: 475 IPTLEEGLQ--LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  S        
Sbjct: 76  IDKLEEDISSSMTNSTAASRPPVT--------------------LRLVVPASQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  ++EC+K I  ++ ESP KG  
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVT 175

Query: 829 QPYDP 843
            PY P
Sbjct: 176 IPYRP 180


>ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa].
          Length = 356

 Score = 82.0 bits (201), Expect = 1e-15
 Identities = 58/225 (25%), Positives = 103/225 (45%), Gaps = 18/225 (8%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  +        
Sbjct: 76  IDKLEEDINSSMTNSTAASRPPV--------------------TLRLVVPATQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIK----IILDLISESPI 816
                 E+RE+T   +++  +  P ST+R + I G P  V EC+K    ++L+ +S+SP 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSP- 174

Query: 817 KGRAQ--PYDP----------NFYDETYDYGGFTMMFDDRRGRPV 915
           +GR    PY P             D   D  G+     D  G P+
Sbjct: 175 QGRVMTIPYQPMPASSPVICAGGQDRCSDAAGYPHATHDLEGTPL 219


>ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa].
          Length = 403

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 1/185 (0%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           LR+L+  K  G++IGK G+ +K +R   +A +++ + S PERI +I+     +   +  I
Sbjct: 20  LRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGSCPERITTITGSTAAVFHAVSMI 79

Query: 475 IPTLEEGL-QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXX 651
              L+E L   P+       P                      LRL+I  S         
Sbjct: 80  AFKLDEDLCAAPANGGNVSRP-------------------PVTLRLVIPASQCGSLIGKA 120

Query: 652 XXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQ 831
                E+RE T   +++  +  P ST+R V + G PD ++ C++ I  +I ESP KG   
Sbjct: 121 GTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILCVRQICAVILESPPKGATI 180

Query: 832 PYDPN 846
           PY P+
Sbjct: 181 PYHPS 185


>ref|XP_003354834.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa].
          Length = 193

 Score = 73.6 bits (179), Expect = 5e-13
 Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 2/192 (1%)
 Frame = +1

Query: 295 LRILLQSKNAGAVIGKGGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKI 474
           +R+L+  K  G++IGK G+++K +R +  A +++ + + PERI++++     I +    I
Sbjct: 16  IRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMI 75

Query: 475 IPTLEEGL--QLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXX 648
           I  LEE +   + + TA S+ P+                     LRL++  +        
Sbjct: 76  IDKLEEDINSSMTNSTAASRPPV--------------------TLRLVVPATQCGSLIGK 115

Query: 649 XXXXXXELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRA 828
                 E+RE+T   +++  +  P ST+R + I G P  V EC++ ++   +E+  + + 
Sbjct: 116 GGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECLEDLMLRPAEAEQQKQL 175

Query: 829 QPYDPNFYDETY 864
            P  P     T+
Sbjct: 176 GPLLPGAVPSTF 187


>ref|XP_003127279.2| PREDICTED: RNA-binding protein Nova-2 [Sus scrofa].
          Length = 492

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 55/227 (24%), Positives = 94/227 (41%), Gaps = 10/227 (4%)
 Frame = +1

Query: 163 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVE--LRILLQSKNAGAVI 336
           ME+E P+             KRP E   E    KRS NT E  E  L++L+ S  AG++I
Sbjct: 1   MESEAPDSR-----------KRPLETPPEVVCTKRS-NTGEEGEYFLKVLIPSYAAGSII 48

Query: 337 GKGGKNIKALRTDYNASVSVPDSSG-----PERILSISADIETIGEILKKIIPTLEEGLQ 501
           GKGG+ I  L+ +  A++ +  S        ER+  +    E +  +   I   + E   
Sbjct: 49  GKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVRE--- 105

Query: 502 LPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLXXXXXXXXXXXXXELREN 681
                   Q   + + V  L  Q     D   + +L++  S               + E 
Sbjct: 106 ------IPQAMTKPEVVNILQPQTTMNPDRAKQAKLIVPNSTAGLIIGKGGATVKAVMEQ 159

Query: 682 TQTTIKLFQECCPQS---TDRVVLIGGKPDRVVECIKIILDLISESP 813
           +   ++L Q+  P+     +RVV + G+P++V + +  I+  + E P
Sbjct: 160 SGAWVQLSQK--PEGINLQERVVTVSGEPEQVHKAVSAIVQKVQEDP 204


>ref|XP_003359061.1| PREDICTED: hypothetical protein LOC100624867 [Sus scrofa].
          Length = 670

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +1

Query: 667 ELRENTQTTIKLFQECCPQSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDP 843
           E  ++T   +++  +  P ST+R V I G PD +++C+K I  ++ ESP KG   PY P
Sbjct: 439 EFLQSTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRP 497


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 46,195,097
Number of extensions: 1523568
Number of successful extensions: 2736
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2712
Number of HSP's successfully gapped: 9
Length of query: 765
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 658
Effective length of database: 8,679,953
Effective search space: 5711409074
Effective search space used: 5711409074
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-007435
         (2297 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr14                                                        3168   0.0  
Sscrofa_Chr04                                                        1447   0.0  
Sscrofa_Chr12                                                         971   0.0  
Sscrofa_ChrX                                                          825   0.0  
Sscrofa_Chr10                                                         630   e-178
Sscrofa_Chr13                                                         488   e-135
Sscrofa_Chr18                                                         385   e-104
Sscrofa_Chr07                                                         139   8e-30
gb|GL893753.2| Sus scrofa unplaced genomic scaffold ChrUScaf1638      105   1e-19

>Sscrofa_Chr14 
||          Length = 153851969

 Score = 3168 bits (1598), Expect = 0.0
 Identities = 1784/1868 (95%), Gaps = 1/1868 (0%)
 Strand = Plus / Minus

                                                                            
Query: 135      gattggtgtgtccatttaatacaagaaaatggaaacggaacaaccggaggaaacctttcc 194
                ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 70919403 gattggtgtgtccatttaatacaagaaaatggaaacggaacaaccagaggaaacctttcc 70919344

                                                                            
Query: 195      caacactgaaaccaatggcgaatttggtaaacgccctgctgaagatatggaagaagaaca 254
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70919343 caacactgaaaccaatggcgaatttggtaaacgccctgctgaagatatggaagaagaaca 70919284

                                                                            
Query: 255      agcttttaaaagatctagaaacactgatgagatggttgaactgcgcatcctgcttcagag 314
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70919283 agcttttaaaagatctagaaacactgatgagatggttgaactgcgcatcctgcttcagag 70919224

                                                                            
Query: 315      caagaatgctggggcagtgattgggaaaggaggcaagaatattaaggctctccgtacaga 374
                ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70919223 caagaatgctggg-cagtgattgggaaaggaggcaagaatattaaggctctccgtacaga 70919165

                                                                            
Query: 375      ctacaatgccagtgtttcagtcccagacagcagtggccccgagcgcatattgagtatcag 434
                |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 70919164 ctacaatgccagtgtttcagtcccagacagcagtggccccaagcgcatattgagtatcag 70919105

                                                                            
Query: 435      tgccgatattgaaacaattggagaaattctgaagaaaatcatccctaccttagaagaggg 494
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70919104 tgccgatattgaaacaattggagaaattctgaagaaaatcatccctaccttagaagaggg 70919045

                                                                            
Query: 495      cctgcagttgccatcacccactgcaaccagccagctcccgctcgaatctgatgctgtgga 554
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70919044 cctgcagttgccatcacccactgcaaccagccagctcccgctcgaatctgatgctgtgga 70918985

                                                                            
Query: 555      atgcttaaattaccagcactataaaggaagcgactttgactgcgagttgagattgttgat 614
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918984 atgcttaaattaccagcactataaaggaagcgactttgactgcgagttgagattgttgat 70918925

                                                                            
Query: 615      tcatcagagtctggcaggaggaattattggggtcaaaggtgctaaaatcaaagaacttcg 674
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 70918924 tcatcagagtctggcaggaggaattattggggtcaaaggtgctaaaatcaaagaacctcg 70918865

                                                                            
Query: 675      ggagaacactcagacaacaatcaagcttttccaggaatgttgtcctcagtccactgacag 734
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918864 ggagaacactcagacaacaatcaagcttttccaggaatgttgtcctcagtccactgacag 70918805

                                                                            
Query: 735      agtcgttctcattggaggaaaacctgatagggttgtagagtgtataaagatcatccttga 794
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 70918804 agtcgttctcattggaggaaaacctgatagggatgtagagtgtataaagatcatccttga 70918745

                                                                            
Query: 795      tctcatatcagagtcgcccattaaaggacgtgctcagccttatgatcccaatttttatga 854
                |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 70918744 tctcatatcagagttgcccattaaaggacgtgctcagccttatgatcccaatttttacga 70918685

                                                                            
Query: 855      tgaaacgtatgattatggtggctttacaatgatgtttgatgatcgccgtggacgtcctgt 914
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918684 tgaaacgtatgattatggtggctttacaatgatgtttgatgatcgccgtggacgtcctgt 70918625

                                                                            
Query: 915      gggatttcccatgcggggaagaggtggttttgacagaatgcctcctggtcgaggagggcg 974
                ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918624 gggatttcctatgcggggaagaggtggttttgacagaatgcctcctggtcgaggagggcg 70918565

                                                                            
Query: 975      tcccatgcctccatctagaagagattatgacgatatgagccctcgtcgaggacctcctcc 1034
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918564 tcccatgcctccatctagaagagattatgacgatatgagccctcgtcgaggacctcctcc 70918505

                                                                            
Query: 1035     ccctcctcctggacgaggtggccggggtggtagcagagctaggaatcttcctcttnnnnn 1094
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 70918504 ccctcctcctggacgaggtggccggggtggtagcagagctaggaatcttcctcttccacc 70918445

                                                                            
Query: 1095     nnnnnnnnnnnntagaggaggagatctaatggcttatgacagaagaggaagacctggaga 1154
                            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918444 accaccaccacctagaggaggagatctaatggcttatgacagaagaggaagacctggaga 70918385

                                                                            
Query: 1155     ccgctatgatggcatggttggtttcagtgctgatgaaacctgggactctgcaattgatac 1214
                |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 70918384 ccgctatgatggcatggttggtttcagtgctgatgaaacctgggactctgcaatcgatac 70918325

                                                                            
Query: 1215     atggagcccatcagagtggcagatggcttatgaaccacagggtggatctggatatgatta 1274
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918324 atggagcccatcagagtggcagatggcttatgaaccacagggtggatctggatatgatta 70918265

                                                                            
Query: 1275     ttcctatgcagggggtcgtggctcatacggtgatcttggtggacctattattactacaca 1334
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918264 ttcctatgcagggggtcgtggctcatacggtgatcttggtggacctattattactacaca 70918205

                                                                            
Query: 1335     agtaactattcccaaagatttggctggatctattattggcaaaggtggtcagcggattaa 1394
                ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 70918204 agtaactattcccaaagatttggctggatctgttattggcaaaggtggtcagcggattaa 70918145

                                                                            
Query: 1395     acaaatccgtcatgaatcaggagcttcgatcaaaattgatgagcctttagaagggtccga 1454
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918144 acaaatccgtcatgaatcaggagcttcgatcaaaattgatgagcctttagaagggtccga 70918085

                                                                            
Query: 1455     agatcggatcattaccattacaggaacacaggaccagatacagaatgcacagtatttgct 1514
                ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 70918084 agatcggatcattaccattacaggaacacaggaccagatacagaatgcacagtgtttgct 70918025

                                                                            
Query: 1515     gcagaacagtgtgaagcagtattctggaaagtttttctaagactagtgaagaactgaagg 1574
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70918024 gcagaacagtgtgaagcagtattctggaaagtttttctaagactagtgaagaactgaagg 70917965

                                                                            
Query: 1575     agtcctgcatcnnnnnnnnnnnnatctgcttctgttcaaaaagccaacattcctctgctt 1634
                |||||||||||            ||||||||||||| |||||||||||||||||||||||
Sbjct: 70917964 agtcctgcatcttttttttttttatctgcttctgtttaaaaagccaacattcctctgctt 70917905

                                                                            
Query: 1635     cataggtgttctgcatttgaggtgtagtgaaatctttgctgttcaccagatgtaatgttt 1694
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70917904 cataggtgttctgcatttgaggtgtagtgaaatctttgctgttcaccagatgtaatgttt 70917845

                                                                            
Query: 1695     tagttcttacaaacagggttnnnnnnnnnnnnagggcgtgcaaaaactaacattgaaatt 1754
                ||||||||||||||||||||            |||| |||||||||||||||||||||||
Sbjct: 70917844 tagttcttacaaacagggttggggggtgggggagggtgtgcaaaaactaacattgaaatt 70917785

                                                                            
Query: 1755     ttgaaacagcagcagagtgagtgaattttaatttttgttcattgttggtggtttnnnnnn 1814
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 70917784 ttgaaacagcagcagagtgagtgaattttaatttttgttcattgttggtggtttaaaaaa 70917725

                                                                            
Query: 1815     nnnttcccccatgtaattattgtgaacactttgctttgtggtcactataacatttnnnnn 1874
                   |||||||||||||||||||||||||||||||||||||||||||| |||||||     
Sbjct: 70917724 aaattcccccatgtaattattgtgaacactttgctttgtggtcactaaaacatttggggg 70917665

                                                                            
Query: 1875     nnnnnnnnacagggnnnnnnngtaacaatagtccatatgtccctggcatctattcagagc 1934
                        ||||||       |||||||||||||||||||||||||||||||||||||||
Sbjct: 70917664 atggggggacagggaaaaaaagtaacaatagtccatatgtccctggcatctattcagagc 70917605

                                                                            
Query: 1935     agtgtgcagaatgtaatgctcttttgtaagaaacgttttatgatttttaaaataaattta 1994
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70917604 agtgtgcagaatgtaatgctcttttgtaagaaacgttttatgatttttaaaataaattta 70917545

                        
Query: 1995     gtgaacct 2002
                ||||||||
Sbjct: 70917544 gtgaacct 70917537


>Sscrofa_Chr04 
||          Length = 143465943

 Score = 1447 bits (730), Expect = 0.0
 Identities = 1272/1450 (87%), Gaps = 15/1450 (1%)
 Strand = Plus / Minus

                                                                            
Query: 135      gattggtgtgtccatttaatacaagaaaatggaaacggaacaaccggaggaaacctttcc 194
                ||||||||||||  |||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 62795318 gattggtgtgtctgtttaatacaagaaaatggaaactgaacaaccagaggaaacctttcc 62795259

                                                                            
Query: 195      caacactgaaaccaatggcgaatttggtaaacgccctgctgaagatatggaagaagaaca 254
                ||||||||||||||||||| |||||||||||| || |||| |||||| |||||| |||||
Sbjct: 62795258 caacactgaaaccaatggcaaatttggtaaactccttgctaaagatacggaagaggaaca 62795199

                                                                            
Query: 255      agcttttaaaagatctagaaacactgatgagatggttgaactgcgcatcctgcttcagag 314
                ||||||||||||||||| |||||||||||||||| ||||| |  | ||||||||||||||
Sbjct: 62795198 agcttttaaaagatctaaaaacactgatgagatgtttgaattatgtatcctgcttcagag 62795139

                                                                            
Query: 315      caagaatgctggggcagtgattgggaaaggaggcaagaatattaaggctctccgtacaga 374
                ||||| |||||||| |||| || ||| | ||||| ||||||||||||| |||| ||||| 
Sbjct: 62795138 caagactgctggggtagtgtttaggatatgaggcgagaatattaaggccctcc-tacagg 62795080

                                                                            
Query: 375      ctacaatgccagtgtttcagtcccagacagcagtggccccgagcgcatattgagtatcag 434
                |||||||||||||||||||| |||||||||||| | | ||||| ||||||||||||||| 
Sbjct: 62795079 ctacaatgccagtgtttcagccccagacagcag-gccaccgagtgcatattgagtatcat 62795021

                                                                            
Query: 435      tgccgatattgaaacaattggagaaattctgaagaaaatcatccctaccttagaagaggg 494
                ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62795020 tgctgatattgaaacaactggagaaattctgaagaaaatcatccctaccttagaagaggg 62794961

                                                                            
Query: 495      cctgcagttgccatcacccactgcaaccagccagctcccgctcgaatctgatgctgtgga 554
                ||||||||||||||||| |||||||||||||||||| | ||| || ||||||||| ||||
Sbjct: 62794960 cctgcagttgccatcactcactgcaaccagccagcttctgcttgagtctgatgctatgga 62794901

                                                                            
Query: 555      atgcttaaattaccagcactataaaggaagcgactttgactgcgagttgagattgttgat 614
                ||||| ||||| ||  | |||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 62794900 atgctaaaattgccgactctataaaggaagtgactttgactgtgagttgagattgttgat 62794841

                                                                            
Query: 615      tcatcagagtctggcaggaggaattattggggtcaaaggtgctaaaatcaaagaacttcg 674
                ||||||||||| || ||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct: 62794840 tcatcagagtccggaaggaggaatcattggggtcgaaggtgataaaatcaaagaacttcg 62794781

                                                                            
Query: 675      ggagaacactcagacaacaatcaagcttttccaggaatgttgtcctcagtccactgacag 734
                 ||||||||| |||||||||||||||||||||||||||||||    || ||  |||||||
Sbjct: 62794780 agagaacactgagacaacaatcaagcttttccaggaatgttg---acattc--ctgacag 62794726

                                                                            
Query: 735      agtcgttctcattggaggaaaacctgatagggttgtagagtgtataaagatcatccttga 794
                ||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 62794725 agtagttctcattggagcaaaacctgatagggttgtagagggtataaagatcatccttaa 62794666

                                                                            
Query: 795      tctcatatcagagtcgcccattaaaggacgtgctcagccttatgatcccaatttttatga 854
                |||||| |||||| | ||||| |||||| | ||||||||| |  ||||| |||| |||||
Sbjct: 62794665 tctcatgtcagagccacccatcaaaggatgcgctcagcctcaccatccccatttgtatga 62794606

                                                                            
Query: 855      tgaaacgtatgattatggtggctttacaatgatgtttgatgatcgccgtggacgtcctgt 914
                |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||  |
Sbjct: 62794605 tgaaacctatgattatggtggctttacaatgatgtttgatgatcgccatggatgtcccat 62794546

                                                                            
Query: 915      gggatttcccatgcggggaagaggtggttttgacagaatgcctcctggtcgaggagggcg 974
                ||||||||||| || || || ||  |||||||||| || |||||||||| ||||||||||
Sbjct: 62794545 gggatttcccaagcaggaaaaagacggttttgacaaaacgcctcctggttgaggagggcg 62794486

                                                                            
Query: 975      tcccatgcctccatctagaagagattatgacgatatgagccctcgtcgaggacctcctcc 1034
                || |||||||||||||||||| |||||| |  || |||||||| ||| ||||| ||||||
Sbjct: 62794485 tctcatgcctccatctagaagggattataataatttgagcccttgtctaggacttcctcc 62794426

                                                                            
Query: 1035     ccctcctcctggacgaggtggccggggtggtagcagagctaggaatcttcctctt---nn 1091
                 |||| |||||||  || |||| ||||||||||||| |||  |||| ||||||||     
Sbjct: 62794425 acctcttcctggagaagatggctggggtggtagcagtgctcagaatattcctcttctacc 62794366

                                                                            
Query: 1092     nnnnnnnnnnnnnnntagaggaggagatctaatggcttatgacagaagaggaagacctgg 1151
                               ||||||||||||||||||||| ||||||||||   ||||||||||
Sbjct: 62794365 accaccaccaccacctagaggaggagatctaatggcctatgacagaa---gaagacctgg 62794309

                                                                            
Query: 1152     agaccgctatgatggcatggttggtttcagtgctgatgaaacctgggactctgcaattga 1211
                |||| ||| || || |||||||||||| |||||||||||||||||||| ||| || | ||
Sbjct: 62794308 agactgctgtggtgtcatggttggtttaagtgctgatgaaacctgggattcttcagtgga 62794249

                                                                            
Query: 1212     tacatggagcccatcagagtggcagatggcttatgaaccacagggtggatctggatatga 1271
                ||||||||||||  |||||||||| ||||||||||||||||||||| | |||||| ||||
Sbjct: 62794248 tacatggagcccgccagagtggcaaatggcttatgaaccacagggtagctctggagatga 62794189

                                                                            
Query: 1272     ttattcctatgcagggggtcgtggctcatacggtgatcttggtggacctattattactac 1331
                |||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||| |||
Sbjct: 62794188 ttattcctatgcggggtgtcatggctcatatggtgatcttggtggacctattattattac 62794129

                                                                            
Query: 1332     acaagtaactattcccaaagatttggctggatctattattggcaaaggtggtcagcggat 1391
                || ||||| ||| ||||| ||||||||||||| | |||||||||||||||||||| ||||
Sbjct: 62794128 accagtaaatatgcccaaggatttggctggatgtgttattggcaaaggtggtcagtggat 62794069

                                                                            
Query: 1392     taaacaaatccgtcatgaatcaggagcttcgatc-aaaattgatgagcctttagaagggt 1450
                ||||||||||| |||||||||||||  |||  || |||||||||||| ||||||||||||
Sbjct: 62794068 taaacaaatccttcatgaatcaggaatttcagtcaaaaattgatgagtctttagaagggt 62794009

                                                                            
Query: 1451     ccgaagatcggatcattaccattacaggaacacaggaccagatacagaatgcacagtatt 1510
                || ||| | ||||||||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 62794008 ccaaagcttggatcattaccattacaagaacacaggaccagatacagaatacacaatatt 62793949

                                                                            
Query: 1511     tgctgcagaacagtgtgaagcagtattctggaaagtttttctaagactagtgaagaactg 1570
                |||||||||||||  |||||||||||||||| ||||||||||||| |||| |||||||||
Sbjct: 62793948 tgctgcagaacagcatgaagcagtattctgg-aagtttttctaaggctagggaagaactg 62793890

                          
Query: 1571     aaggagtcct 1580
                ||||||||||
Sbjct: 62793889 aaggagtcct 62793880



 Score =  248 bits (125), Expect = 1e-62
 Identities = 230/269 (85%), Gaps = 2/269 (0%)
 Strand = Plus / Minus

                                                                            
Query: 1601     tgcttctgttcaaaaagccaacattcctctgcttcataggtgttctgcatttgaggtgta 1660
                |||||||||| |||||| || |||||||||||||||||||| |||||||||||| |||||
Sbjct: 62793848 tgcttctgtttaaaaagtcagcattcctctgcttcataggtattctgcatttgaagtgta 62793789

                                                                            
Query: 1661     gtgaaatctttgctgttcaccagatgtaatgttttagttcttacaaacagggttnnnnnn 1720
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 62793788 gtgaagtctttgctgttcaccagatgtaatgttttagttcttacaaacagggttggggta 62793729

                                                                            
Query: 1721     nnnnnnagggcgtgcaaaaactaacattgaaattttgaaacagcagcagagtgagtgaat 1780
                      |||| |||||||||||||  ||| ||||||| |||||||||||| |||||||||
Sbjct: 62793728 tgtgggagggtgtgcaaaaactaatgttggaattttggaacagcagcaga-tgagtgaat 62793670

                                                                            
Query: 1781     tttaatttttgttcattgttggtggtttnnnnnnnnnttcccccatgtaattattgtgaa 1840
                ||||||||||||||||||||||||||||         | |||||| ||||||||||||||
Sbjct: 62793669 tttaatttttgttcattgttggtggttt-aacaaaattgcccccaagtaattattgtgaa 62793611

                                             
Query: 1841     cactttgctttgtggtcactataacattt 1869
                || |||||||| | |||||| ||||||||
Sbjct: 62793610 cattttgctttatagtcactgtaacattt 62793582



 Score =  131 bits (66), Expect = 2e-27
 Identities = 87/94 (92%)
 Strand = Plus / Minus

                                                                            
Query: 1897     taacaatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctct 1956
                |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 62793556 taacaatagtccatatatccctggcatctattcagagcagtgtgcagaatgtaatgcttt 62793497

                                                  
Query: 1957     tttgtaagaaacgttttatgatttttaaaataaa 1990
                || |||||||| ||| ||  ||||||||||||||
Sbjct: 62793496 ttcgtaagaaaagttctacaatttttaaaataaa 62793463



 Score =  105 bits (53), Expect = 1e-19
 Identities = 89/101 (88%)
 Strand = Plus / Minus

                                                                            
Query: 23       gagaaaggaggagggcgctccaggcgaaagctctgcagacgccattatcctctgtttctt 82
                |||||||||||||||| ||||||| |||||  |  |||||||| ||||||||||||||||
Sbjct: 62795503 gagaaaggaggagggcactccaggtgaaagtaccacagacgccgttatcctctgtttctt 62795444

                                                         
Query: 83       cgctgcaccaacctcgaagtcttgtctacgtcccgcttatt 123
                | |||||||||||| || |||||| ||||||||| ||||||
Sbjct: 62795443 cactgcaccaaccttgacgtcttgcctacgtcccacttatt 62795403


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  971 bits (490), Expect = 0.0
 Identities = 754/844 (89%), Gaps = 21/844 (2%)
 Strand = Plus / Plus

                                                                            
Query: 141      tgtgtccatttaatacaagaaaatggaaacggaacaaccggaggaaacctttcccaacac 200
                ||||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 46365729 tgtgtccatttaacataagaaaatggaaactgaacaaccagaggaaacctttcccaacac 46365788

                                                                            
Query: 201      tgaaaccaatggcgaatttggtaaacgccctgctgaagatatggaagaagaacaagcttt 260
                ||||||| |||| ||||||| ||||||||||| |||| |||||||||  ||||||| |||
Sbjct: 46365789 tgaaacccatggtgaatttgataaacgccctgatgaaaatatggaagcggaacaaggttt 46365848

                                                                            
Query: 261      taaaagatctagaaacactgatgagatggttgaactgcgcatcctgcttcagagcaagaa 320
                | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct: 46365849 tgaaagatctagaaacactgatgagatggttgaattgcgcatcctgcttcagagcaggca 46365908

                                                                            
Query: 321      tgctggggcagtgattgggaaaggaggcaagaatattaaggctctccgtacagactacaa 380
                 || || ||||||||                   ||||||||||||||||||||| ||||
Sbjct: 46365909 agccggcgcagtgat-------------------attaaggctctccgtacagaccacaa 46365949

                                                                            
Query: 381      tgccagtgtttcagtcccagacagcagtggccccgagcgcatattgagtatcagtgccga 440
                 ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||
Sbjct: 46365950 ggccagtgtttcagtcccaggcagcagtggccccgagcgcatatggagtatcagtgctga 46366009

                                                                            
Query: 441      tattgaaacaattggagaaattctgaagaaaatcatccctaccttagaagagggcctgca 500
                |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 46366010 tattgaaacaattggagaaattctgaagaaaatcatccctgccttaggagagggcctgca 46366069

                                                                            
Query: 501      gttgccatcacccactgcaaccagccagctcccgctcgaatctgatgctgtggaatgctt 560
                | |||   | ||| |||| |||||||||| ||||| |||||| |  ||||||||||||||
Sbjct: 46366070 ggtgctgccgccctctgctaccagccagcccccgcccgaatcggg-gctgtggaatgctt 46366128

                                                                            
Query: 561      aaattaccagcactataaaggaagcgactttgactgcgagttgagattgttgattcatca 620
                 ||| |||||||| ||||||||||| | | |||||||||||||||||| |||| || |||
Sbjct: 46366129 caatcaccagcacaataaaggaagcaattctgactgcgagttgagattattgactcctca 46366188

                                                                            
Query: 621      gagtctggcaggaggaattattggggtcaaaggtgctaaaatcaaagaacttcgggagaa 680
                |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct: 46366189 gagtctggcaggaggaattattggggtcaaagctgctaaaatcaaagaacttggagagaa 46366248

                                                                            
Query: 681      cactcagacaacaatcaagcttttccaggaatgttgtcctcagtccactgacagagtcgt 740
                |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 46366249 cactcagacaacaatccagcttttccaggactgttgtcctcagtccactgacagagttgt 46366308

                                                                            
Query: 741      tctcattggaggaaaacctgatagggttgtagagtgtataaagatcatccttgatctcat 800
                |||| |||||||||||||||||||| ||| |||| ||| | |||||||||||||||||||
Sbjct: 46366309 tctcgttggaggaaaacctgatagg-ttgcagagcgtacagagatcatccttgatctcat 46366367

                                                                            
Query: 801      atcagagtcgcccattaaaggacgtgctcagccttatgatcccaatttttatgatgaaac 860
                ||||||||||||||| ||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct: 46366368 atcagagtcgcccatcaaaggacgtgctcagtcttaggatcccaatttttacgatgaaac 46366427

                                                                            
Query: 861      gtatgattatggtggctttacaatgatgtttgatgatcgccgtggacgtcctgtgggatt 920
                 ||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||
Sbjct: 46366428 ctatgattatggtggctttagaatgatgtttgatggtcgccgtggatgtcctgtgggatt 46366487

                                                                            
Query: 921      tcccatgcggggaagaggtggttttgacagaatgcctcctggtcgaggagggcgtcccat 980
                ||||||||||||||||||||||| |||| ||||||||||| ||| |||||||||||||||
Sbjct: 46366488 tcccatgcggggaagaggtggttctgaccgaatgcctcctagtcaaggagggcgtcccat 46366547

                    
Query: 981      gcct 984
                ||||
Sbjct: 46366548 gcct 46366551



 Score =  789 bits (398), Expect = 0.0
 Identities = 750/879 (85%), Gaps = 16/879 (1%)
 Strand = Plus / Plus

                                                                            
Query: 1001     atgacgatatgagccctcgtcgaggacctcctccccctcctcctggacgaggtggccggg 1060
                |||| ||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 46366590 atgatgatgtgagcccccgttgaggacctcctccccctcctcctggacgaggtggccggg 46366649

                                                                            
Query: 1061     gtggtagcagagctaggaatcttcctcttnnnnnnnnnnnnnnnnntagaggaggagatc 1120
                |||||||||||||| ||||||||||||||                 ||||||||||||||
Sbjct: 46366650 gtggtagcagagctcggaatcttcctctttcaccaccaccacctcctagaggaggagatc 46366709

                                                                            
Query: 1121     taatggcttatgacagaagaggaagacctggagaccgctatgatggcatggttggtttca 1180
                || ||||||||||||  ||||||||||||||||||| | | |||||||||| ||||||| 
Sbjct: 46366710 tagtggcttatgaca--agaggaagacctggagaccacgaggatggcatggctggtttcg 46366767

                                                                            
Query: 1181     gtgctgatgaaacctgggactctgcaattgatacatggagcccatcagagtggcagatgg 1240
                ||||||| |||||||||||||||||| | |||||||||||||| |||| |||||| ||||
Sbjct: 46366768 gtgctgaggaaacctgggactctgcagtagatacatggagcccgtcagcgtggcacatgg 46366827

                                                                            
Query: 1241     cttatgaaccacagggtggatctggatatgattattcctatgcagggggtcgtggctcat 1300
                |||||||||||| || ||| |||||||  ||||||||||||||||||||  | |||||| 
Sbjct: 46366828 cttatgaaccaccgg-tggctctggatgggattattcctatgcagggggctggggctcac 46366886

                                                                            
Query: 1301     acggtgatcttggtggacctattattactacacaagtaactattcccaaagatttggctg 1360
                | |||||| |||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 46366887 atggtgattttggcggacctcttattaccacacaagtaactattcccaaagatttggctg 46366946

                                                                            
Query: 1361     gatctattattggcaaaggtggtc---------agcggattaaacaaatccgtcatgaat 1411
                |||||| ||||  ||||||||            ||||||||| ||||||| ||||| |||
Sbjct: 46366947 gatctaatattcacaaaggtgaaattaaattaaagcggattacacaaatctgtcataaat 46367006

                                                                            
Query: 1412     caggagcttcgatcaaaattgatgagcctttagaagggtccgaagatcggatcattacca 1471
                ||||||||||||||||||||||  || |||||||||||||| ||||||||||||||||||
Sbjct: 46367007 caggagcttcgatcaaaattgactaggctttagaagggtccaaagatcggatcattacca 46367066

                                                                            
Query: 1472     ttacaggaacacaggaccagatacagaatgcacagtatttgctgcagaacagtgtgaagc 1531
                || |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 46367067 ttccaggaacacaggaccagatacagaatgcgcagtatttgctgcaggacagtgtgaagc 46367126

                                                                            
Query: 1532     agtattctggaaagtttttctaagactagtgaagaactgaaggagtcctgcatc--nnnn 1589
                |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||      
Sbjct: 46367127 agtactctggaaagttttgctaagactagtgaggaactgaaggagtcctgcatctttttt 46367186

                                                                            
Query: 1590     nnnnnnnnatctgcttctgttcaaaaagccaacattcctctgcttcataggtgttctgca 1649
                        ||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 46367187 gtctttttatctgcttctgtttaaaaagccaacagtcctctgcttcataggtgttctgca 46367246

                                                                            
Query: 1650     tttgaggtgtagtgaaatctttgctgttcaccagatgtaatgttttagttcttacaaaca 1709
                 |||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||
Sbjct: 46367247 cttgaggtgtagtgaaatctttgctcttcaccggatgtaatgttttcgttcttacaaaca 46367306

                                                                            
Query: 1710     gggttnnnnnnnnnnnnagggcgtgcaaaaactaacattgaaattttgaaacagcagcag 1769
                |||||            |||||||||| ||||||||| ||||| |||||||| |||||||
Sbjct: 46367307 gggtt-gggggtgggggagggcgtgcataaactaacactgaaa-tttgaaactgcagcag 46367364

                                                                            
Query: 1770     agtgagtgaattttaatttttgttcattgttggtggtttnnnnnnnnnttcccccatgta 1829
                | |||||||||||||||||||||||||| ||||||||||         | ||  ||||||
Sbjct: 46367365 aatgagtgaattttaatttttgttcattattggtggtttttaaaaaattccctgcatgta 46367424

                                                       
Query: 1830     attattgtgaacactttgctttgtggtcactataacatt 1868
                ||||||||| |||||||||||||||||||||||||||||
Sbjct: 46367425 attattgtgcacactttgctttgtggtcactataacatt 46367463



 Score =  119 bits (60), Expect = 7e-24
 Identities = 72/76 (94%)
 Strand = Plus / Plus

                                                                            
Query: 1927     ttcagagcagtgtgcagaatgtaatgctcttttgtaagaaacgttttatgatttttaaaa 1986
                |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 46367614 ttcagagcagggtgcagaatgtaatgttcttttgtaagaaaccttttatgatttttaaaa 46367673

                                
Query: 1987     taaatttagtgaacct 2002
                ||| ||||||||||||
Sbjct: 46367674 taagtttagtgaacct 46367689



 Score =  105 bits (53), Expect = 1e-19
 Identities = 59/61 (96%)
 Strand = Plus / Plus

                                                                            
Query: 1942     agaatgtaatgctcttttgtaagaaacgttttatgatttttaaaataaatttagtgaacc 2001
                ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 46367538 agaatgtaatgctctcttgtaagaaaccttttatgatttttaaaataaatttagtgaacc 46367597

                 
Query: 2002     t 2002
                |
Sbjct: 46367598 t 46367598


>Sscrofa_ChrX 
||          Length = 144288218

 Score =  825 bits (416), Expect = 0.0
 Identities = 631/708 (89%), Gaps = 8/708 (1%)
 Strand = Plus / Plus

                                                                             
Query: 1107      tagaggaggagatctaatggcttatgacagaagaggaagacctggagaccgctatgatgg 1166
                 |||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||
Sbjct: 100298987 tagaggaggagatctagtggcttatgacagaagaggaagacctggagaccacgaggatgg 100299046

                                                                             
Query: 1167      catggttggtttcagtgctgatgaaacctgggactctgcaattgatacatggagcccatc 1226
                 ||||| ||||||| ||||||| |||||||||||||||||| | |||||| ||||||| ||
Sbjct: 100299047 catggctggtttcggtgctgaggaaacctgggactctgcagtagatacacggagcccgtc 100299106

                                                                             
Query: 1227      agagtggcagatggcttatgaaccacagggtggatctggatatgattattcctatgcagg 1286
                 || ||||||||||||||||||||||| || ||| |||||||  |||||||||||||||||
Sbjct: 100299107 agtgtggcagatggcttatgaaccaccgg-tggctctggatgggattattcctatgcagg 100299165

                                                                             
Query: 1287      gggtcgtggctcatacggtgatcttggtggacctattattactacacaagtaactattcc 1346
                 |||  | |||||| | |||||| |||| |||||| ||||||| |||||||||||||||||
Sbjct: 100299166 gggctggggctcacatggtgattttggcggacctcttattaccacacaagtaactattcc 100299225

                                                                             
Query: 1347      caaagatttggctggatctattattggcaaaggtggtcagcggattaaacaaatccgtca 1406
                 |||||||||||||||||||| ||||  |||||||||||||||||||||||||||| ||||
Sbjct: 100299226 caaagatttggctggatctaatattcacaaaggtggtcagcggattaaacaaatctgtca 100299285

                                                                             
Query: 1407      tgaatcaggagcttcgatcaaaattgatgagcctttagaagggtccgaagatcggatcat 1466
                 | ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 100299286 taaatcaggagcttcgatcaaaattgacgagcctttagaagggtccaaagatcggatcat 100299345

                                                                             
Query: 1467      taccattacaggaacacaggaccagatacagaatgcacagtatttgctgcagaacagtgt 1526
                 ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100299346 taccattccaggaacgcaggaccagatacagaatgcacagtatttgctgcagaacagtgt 100299405

                                                                             
Query: 1527      gaagcagtattctggaaagtttttctaagactagtgaagaactgaaggagtcctgcatc- 1585
                 ||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| 
Sbjct: 100299406 gaagcagtactctggaaagttttgctaagactagtgaggaactgaaggagtcctgcatct 100299465

                                                                             
Query: 1586      -----nnnnnnnnnnnnatctgcttctgttcaaaaagccaacattcctctgcttcatagg 1640
                                   |||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 100299466 tttttctttgtctttttgtctgcttctgtttaaaaagccaacagtcctctgcttcatagg 100299525

                                                                             
Query: 1641      tgttctgcatttgaggtgtagtgaaatctttgctgttcaccagatgtaatgttttagttc 1700
                 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 100299526 tgttctgcatttgaggtgtagtgaaatctttgcttttcaccagatgtaatgttttagttc 100299585

                                                                             
Query: 1701      ttacaaacagggttnnnnnnnnnnnnagggcgtgcaaaaactaacattgaaattttgaaa 1760
                 |||||||||||| |            |||||||||| ||||||||| |||||||||||||
Sbjct: 100299586 ttacaaacagggat-gggggtgggggagggcgtgcataaactaacactgaaattttgaaa 100299644

                                                                 
Query: 1761      cagcagcagagtgagtgaattttaatttttgttcattgttggtggttt 1808
                 |||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 100299645 cagcagcagaatgagtgaattttaatttttgttcattattggtggttt 100299692



 Score =  103 bits (52), Expect = 4e-19
 Identities = 58/60 (96%)
 Strand = Plus / Minus

                                                                             
Query: 1942      agaatgtaatgctcttttgtaagaaacgttttatgatttttaaaataaatttagtgaacc 2001
                 ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 100298841 agaatgtaatgttcttttgtaagaaaccttttatgatttttaaaataaatttagtgaacc 100298782



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                                
Query: 1839      aacactttgctttgtggtcactataacattt 1869
                 |||||||||||||||||||||||||||||||
Sbjct: 100298945 aacactttgctttgtggtcactataacattt 100298915


>Sscrofa_Chr10 
||          Length = 79102373

 Score =  630 bits (318), Expect = e-178
 Identities = 427/481 (88%)
 Strand = Plus / Plus

                                                                            
Query: 1522     agtgtgaagcagtattctggaaagtttttctaagactagtgaagaactgaaggagtcctg 1581
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113815 agtgtgaagcagtattctggaaagtttttctaagactagtgaagaactgaaggagtcctg 35113874

                                                                            
Query: 1582     catcnnnnnnnnnnnnatctgcttctgttcaaaaagccaacattcctctgcttcataggt 1641
                ||||            ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 35113875 catcttttttttttttatctgcttctgtttaaaaagccaacattcctctgcttcataggt 35113934

                                                                            
Query: 1642     gttctgcatttgaggtgtagtgaaatctttgctgttcaccagatgtaatgttttagttct 1701
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35113935 gttctgcatttgaggtgtagtgaaatctttgctgttcaccagatgtaatgttttagttct 35113994

                                                                            
Query: 1702     tacaaacagggttnnnnnnnnnnnnagggcgtgcaaaaactaacattgaaattttgaaac 1761
                |||||||||||||            |||||||||||||||||||||||||||||||||||
Sbjct: 35113995 tacaaacagggttggggggtgggggagggcgtgcaaaaactaacattgaaattttgaaac 35114054

                                                                            
Query: 1762     agcagcagagtgagtgaattttaatttttgttcattgttggtggtttnnnnnnnnnttcc 1821
                |||||||||||||||||||||||||||||||||||||||||||||||         ||||
Sbjct: 35114055 agcagcagagtgagtgaattttaatttttgttcattgttggtggtttaaaaaaaaattcc 35114114

                                                                            
Query: 1822     cccatgtaattattgtgaacactttgctttgtggtcactataacatttnnnnnnnnnnnn 1881
                ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 35114115 cccatgtaattattgtgaacactttgctttgtggtcactataacatttgggggagggggg 35114174

                                                                            
Query: 1882     nacagggnnnnnnngtaacaatagtccatatgtccctggcatctattcagagcagtgtgc 1941
                 ||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35114175 gacagggaaaaaaagtaacaatagtccatatgtccctggcatctattcagagcagtgtgc 35114234

                                                                            
Query: 1942     agaatgtaatgctcttttgtaagaaacgttttatgatttttaaaataaatttagtgaacc 2001
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35114235 agaatgtaatgctcttttgtaagaaacgttttatgatttttaaaataaatttagtgaacc 35114294

                 
Query: 2002     t 2002
                |
Sbjct: 35114295 t 35114295



 Score =  563 bits (284), Expect = e-157
 Identities = 284/284 (100%)
 Strand = Plus / Plus

                                                                            
Query: 806      agtcgcccattaaaggacgtgctcagccttatgatcccaatttttatgatgaaacgtatg 865
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111182 agtcgcccattaaaggacgtgctcagccttatgatcccaatttttatgatgaaacgtatg 35111241

                                                                            
Query: 866      attatggtggctttacaatgatgtttgatgatcgccgtggacgtcctgtgggatttccca 925
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111242 attatggtggctttacaatgatgtttgatgatcgccgtggacgtcctgtgggatttccca 35111301

                                                                            
Query: 926      tgcggggaagaggtggttttgacagaatgcctcctggtcgaggagggcgtcccatgcctc 985
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111302 tgcggggaagaggtggttttgacagaatgcctcctggtcgaggagggcgtcccatgcctc 35111361

                                                                            
Query: 986      catctagaagagattatgacgatatgagccctcgtcgaggacctcctccccctcctcctg 1045
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111362 catctagaagagattatgacgatatgagccctcgtcgaggacctcctccccctcctcctg 35111421

                                                            
Query: 1046     gacgaggtggccggggtggtagcagagctaggaatcttcctctt 1089
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111422 gacgaggtggccggggtggtagcagagctaggaatcttcctctt 35111465



 Score =  337 bits (170), Expect = 2e-89
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1354     ttggctggatctattattggcaaaggtggtcagcggattaaacaaatccgtcatgaatca 1413
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35112870 ttggctggatctattattggcaaaggtggtcagcggattaaacaaatccgtcatgaatca 35112929

                                                                            
Query: 1414     ggagcttcgatcaaaattgatgagcctttagaagggtccgaagatcggatcattaccatt 1473
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35112930 ggagcttcgatcaaaattgatgagcctttagaagggtccgaagatcggatcattaccatt 35112989

                                                                  
Query: 1474     acaggaacacaggaccagatacagaatgcacagtatttgctgcagaacag 1523
                ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35112990 acaggaacacaggaccagatacagaatgcacagtatttgctgcagaacag 35113039



 Score =  266 bits (134), Expect = 5e-68
 Identities = 134/134 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2        acagctagtgagtgcgcgaacgagaaaggaggagggcgctccaggcgaaagctctgcaga 61
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35102715 acagctagtgagtgcgcgaacgagaaaggaggagggcgctccaggcgaaagctctgcaga 35102774

                                                                            
Query: 62       cgccattatcctctgtttcttcgctgcaccaacctcgaagtcttgtctacgtcccgctta 121
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35102775 cgccattatcctctgtttcttcgctgcaccaacctcgaagtcttgtctacgtcccgctta 35102834

                              
Query: 122      tttgcggcctagag 135
                ||||||||||||||
Sbjct: 35102835 tttgcggcctagag 35102848



 Score =  260 bits (131), Expect = 3e-66
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                            
Query: 677      agaacactcagacaacaatcaagcttttccaggaatgttgtcctcagtccactgacagag 736
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35110400 agaacactcagacaacaatcaagcttttccaggaatgttgtcctcagtccactgacagag 35110459

                                                                            
Query: 737      tcgttctcattggaggaaaacctgatagggttgtagagtgtataaagatcatccttgatc 796
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35110460 tcgttctcattggaggaaaacctgatagggttgtagagtgtataaagatcatccttgatc 35110519

                           
Query: 797      tcatatcagag 807
                |||||||||||
Sbjct: 35110520 tcatatcagag 35110530



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                            
Query: 565      taccagcactataaaggaagcgactttgactgcgagttgagattgttgattcatcagagt 624
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35109939 taccagcactataaaggaagcgactttgactgcgagttgagattgttgattcatcagagt 35109998

                                                                      
Query: 625      ctggcaggaggaattattggggtcaaaggtgctaaaatcaaagaacttcgggag 678
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35109999 ctggcaggaggaattattggggtcaaaggtgctaaaatcaaagaacttcgggag 35110052



 Score =  196 bits (99), Expect = 4e-47
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                            
Query: 220      ggtaaacgccctgctgaagatatggaagaagaacaagcttttaaaagatctagaaacact 279
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35105644 ggtaaacgccctgctgaagatatggaagaagaacaagcttttaaaagatctagaaacact 35105703

                                                       
Query: 280      gatgagatggttgaactgcgcatcctgcttcagagcaag 318
                |||||||||||||||||||||||||||||||||||||||
Sbjct: 35105704 gatgagatggttgaactgcgcatcctgcttcagagcaag 35105742



 Score =  170 bits (86), Expect = 2e-39
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1170     ggttggtttcagtgctgatgaaacctgggactctgcaattgatacatggagcccatcaga 1229
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111925 ggttggtttcagtgctgatgaaacctgggactctgcaattgatacatggagcccatcaga 35111984

                                          
Query: 1230     gtggcagatggcttatgaaccacagg 1255
                ||||||||||||||||||||||||||
Sbjct: 35111985 gtggcagatggcttatgaaccacagg 35112010



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1270     gattattcctatgcagggggtcgtggctcatacggtgatcttggtggacctattattact 1329
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35112390 gattattcctatgcagggggtcgtggctcatacggtgatcttggtggacctattattact 35112449

                                        
Query: 1330     acacaagtaactattcccaaagat 1353
                ||||||||||||||||||||||||
Sbjct: 35112450 acacaagtaactattcccaaagat 35112473



 Score =  149 bits (75), Expect = 8e-33
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                            
Query: 419      gcatattgagtatcagtgccgatattgaaacaattggagaaattctgaagaaaatcatcc 478
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35108770 gcatattgagtatcagtgccgatattgaaacaattggagaaattctgaagaaaatcatcc 35108829

                               
Query: 479      ctaccttagaagagg 493
                |||||||||||||||
Sbjct: 35108830 ctaccttagaagagg 35108844



 Score =  147 bits (74), Expect = 3e-32
 Identities = 74/74 (100%)
 Strand = Plus / Plus

                                                                            
Query: 491      agggcctgcagttgccatcacccactgcaaccagccagctcccgctcgaatctgatgctg 550
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35109362 agggcctgcagttgccatcacccactgcaaccagccagctcccgctcgaatctgatgctg 35109421

                              
Query: 551      tggaatgcttaaat 564
                ||||||||||||||
Sbjct: 35109422 tggaatgcttaaat 35109435



 Score =  117 bits (59), Expect = 3e-23
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                           
Query: 317      agaatgctggggcagtgattgggaaaggaggcaagaatattaaggctctccgtacagac 375
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35106323 agaatgctggggcagtgattgggaaaggaggcaagaatattaaggctctccgtacagac 35106381



 Score =  115 bits (58), Expect = 1e-22
 Identities = 58/58 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1115     gagatctaatggcttatgacagaagaggaagacctggagaccgctatgatggcatggt 1172
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35111599 gagatctaatggcttatgacagaagaggaagacctggagaccgctatgatggcatggt 35111656



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                               
Query: 134      agattggtgtgtccatttaatacaagaaaatggaaacggaacaaccg 180
                |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35105020 agattggtgtgtccatttaatacaagaaaatggaaacggaacaaccg 35105066



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                            
Query: 376      tacaatgccagtgtttcagtcccagacagcagtggccccgagcg 419
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35107847 tacaatgccagtgtttcagtcccagacagcagtggccccgagcg 35107890



 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 47/49 (95%), Gaps = 2/49 (4%)
 Strand = Plus / Plus

                                                                 
Query: 174      acaaccggaggaaacctttcccaacactgaaaccaatggcgaatttggt 222
                ||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 35105176 acaaccggaggaa-cctttccca-cactgaaaccaatggcgaatttggt 35105222


>Sscrofa_Chr13 
||          Length = 218635234

 Score =  488 bits (246), Expect = e-135
 Identities = 476/554 (85%), Gaps = 12/554 (2%)
 Strand = Plus / Plus

                                                                             
Query: 1134      cagaagaggaagacctggagaccgctatgatggcatggttggtttcagtgctgatgaaac 1193
                 ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 111791228 cagaagaggaacacctggagactgctatgatggcatggttggtttcagtgctgatgaaac 111791287

                                                                             
Query: 1194      ctgggactctgcaattgatacatggagcccatcagagtggcagatggcttatgaaccaca 1253
                 ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 111791288 ctgggactccgcaatagatacatcgagcccatcagagtggcagatggcttatgaaccaca 111791347

                                                                             
Query: 1254      gggtggatctggatatgattattcctatgcagggggtcgtggctcatacggtgatcttgg 1313
                 |||||| ||||||||||||| |||||||||||||||| |||||||||| |||||||||||
Sbjct: 111791348 gggtggctctggatatgattgttcctatgcagggggttgtggctcatatggtgatcttgg 111791407

                                                                             
Query: 1314      tggacctattattactacacaagtaactattcccaaagatttggctggatctattattgg 1373
                 |||||||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 111791408 tggacctattgttactactcaagtaactattctcaaagattttgctggatctattattgg 111791467

                                                                             
Query: 1374      caaaggtggtcagcggattaaacaaatccgtcatgaatcaggagcttcgatcaaaattga 1433
                 |||| |  ||||| ||||||||||||||| |||| ||| ||||||||| ||||||| |||
Sbjct: 111791468 caaatgcagtcagtggattaaacaaatccatcataaatgaggagcttcaatcaaaactga 111791527

                                                                             
Query: 1434      tgagcctttagaagggtccgaagatcggatcattaccattacaggaacacaggaccagat 1493
                 |||| ||||||||  ||| |||||||||| || |||  || |||||||| ||   |||||
Sbjct: 111791528 tgagtctttagaaatgtctgaagatcggaacactactgttgcaggaacagag--acagat 111791585

                                                                             
Query: 1494      acagaatgcacagtat-----ttgctgcagaacagtgtgaagcagtattctggaaagttt 1548
                 | |||||| || ||||     ||  | ||||| || |||||| |||||||| ||||||||
Sbjct: 111791586 atagaatgaacggtatttcacttcatacagaatagcgtgaagtagtattctagaaagttt 111791645

                                                                             
Query: 1549      ttctaagactagtgaagaactgaaggagtcctgcatcnnnnnnnnnnnnatct----gct 1604
                 |||||||| |||||||||| ||||| |||||||  ||             |||     ||
Sbjct: 111791646 ttctaaga-tagtgaagaaatgaagaagtcctgtgtcttttttttttttttcttaaatct 111791704

                                                                             
Query: 1605      tctgttcaaaaagccaacattcctctgcttcataggtgttctgcatttgaggtgtagtga 1664
                 |||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct: 111791705 tctgtttaaaaagccaacattcctctgcttaataggtgttctgcatttgaggtatagcga 111791764

                               
Query: 1665      aatctttgctgttc 1678
                 ||||||| ||||||
Sbjct: 111791765 aatcttttctgttc 111791778



 Score =  280 bits (141), Expect = 3e-72
 Identities = 335/403 (83%), Gaps = 30/403 (7%)
 Strand = Plus / Plus

                                                                             
Query: 135       gattggtgtgtccatttaatacaagaaaatggaaacggaacaaccggaggaaacctttcc 194
                 ||||| ||||||||||||||||||||| |||||||| |||||    |||||| |||| ||
Sbjct: 111790845 gattgttgtgtccatttaatacaagaagatggaaactgaaca----gaggaagccttccc 111790900

                                                                             
Query: 195       caacactgaaaccaatggcgaatttggtaaacgccctgctgaagatatggaagaagaaca 254
                 |||||||||||| |||||| |||||||||||| |||||||||||| | |||||| |||||
Sbjct: 111790901 caacactgaaactaatggctaatttggtaaacaccctgctgaagacacggaagaggaaca 111790960

                                                                             
Query: 255       agcttttaaaaga--tctag-----aaacactgatgagatggttgaactgcgcatcctgc 307
                 |||||||||||||   ||||     ||||||||||| | |  ||||| |  |||||||||
Sbjct: 111790961 agcttttaaaagaacactagaaaaaaaacactgatgtgttcattgaattatgcatcctgc 111791020

                                                                             
Query: 308       ttcagagcaagaatgctggggcagtgattgggaaaggaggcaagaatattaaggctctcc 367
                 ||||||||||||||| |||  |||||||||||||||||||||| ||||||| |||| |  
Sbjct: 111791021 ttcagagcaagaatgttggatcagtgattgggaaaggaggcaataatattatggcttttg 111791080

                                                                             
Query: 368       gtacagactacaatgccagtgtttcagtcccagacagcagtggccccgagcgcatattga 427
                 |||||||| |||||| |||||||||||||||||||| ||||||||| ||| |        
Sbjct: 111791081 gtacagaccacaatgtcagtgtttcagtcccagacatcagtggccctgagtg-------- 111791132

                                                                             
Query: 428       gtatcagtgccgatattgaaacaattggagaaattctgaagaaaatcatccctaccttag 487
                            |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111791133 -----------gatactgaaacaattggagaaattctgaagaaaatcatccctaccttag 111791181

                                                            
Query: 488       aagagggcctgcagttgccatcacccactgcaaccagccagct 530
                 |||| ||||| |||||||||  |||||||| ||||||||||||
Sbjct: 111791182 aagatggccttcagttgccactacccactgtaaccagccagct 111791224



 Score =  174 bits (88), Expect = 1e-40
 Identities = 105/110 (95%), Gaps = 3/110 (2%)
 Strand = Plus / Plus

                                                                             
Query: 1896      gtaacaatagtccatatg---tccctggcatctattcagagcagtgtgcagaatgtaatg 1952
                 ||||||||||||||||||   |||||||||||||||||||||| ||||||||||||||||
Sbjct: 111791972 gtaacaatagtccatatgatgtccctggcatctattcagagcaatgtgcagaatgtaatg 111792031

                                                                   
Query: 1953      ctcttttgtaagaaacgttttatgatttttaaaataaatttagtgaacct 2002
                 |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 111792032 ctcttttgtaagaaacattttatgatttttaaaataaatttagtgaacct 111792081



 Score =  159 bits (80), Expect = 8e-36
 Identities = 123/139 (88%), Gaps = 1/139 (0%)
 Strand = Plus / Plus

                                                                             
Query: 1727      agggcgtgcaaaaactaacattgaaattttgaaacagcagcagagtgagtgaattttaat 1786
                 ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| 
Sbjct: 111791805 agggcatgcaaaaactaacactgacattttgaaacagcagcagagtgagtgaattttaa- 111791863

                                                                             
Query: 1787      ttttgttcattgttggtggtttnnnnnnnnnttcccccatgtaattattgtgaacacttt 1846
                 |||||||||||||||||||||          | |||||||||||||||||||||||||||
Sbjct: 111791864 ttttgttcattgttggtggttaaaaaaaaattccccccatgtaattattgtgaacacttt 111791923

                                    
Query: 1847      gctttgtggtcactataac 1865
                 |||||||||||||| ||||
Sbjct: 111791924 gctttgtggtcactctaac 111791942



 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Plus

                                                                            
Query: 1897     taacaatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctct 1956
                ||||||||||| |||| || |||||||||| ||||| ||||||||||||||||||| || 
Sbjct: 34090906 taacaatagtctatatatctctggcatctactcagaacagtgtgcagaatgtaatgttcc 34090965

                                         
Query: 1957     tttgtaagaaacgttttatgatttt 1981
                |||||||||||| ||||| ||||||
Sbjct: 34090966 tttgtaagaaacattttaagatttt 34090990


>Sscrofa_Chr18 
||          Length = 61220071

 Score =  385 bits (194), Expect = e-104
 Identities = 325/376 (86%), Gaps = 8/376 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1440     tttagaagggtccgaagatcggatcattaccattacaggaacacaggaccagatacagaa 1499
                |||||||||||| |||| | |||| ||||||||||||||| ||||||||  |||||||||
Sbjct: 48764085 tttagaagggtcggaagcttggataattaccattacaggagcacaggact-gatacagaa 48764143

                                                                            
Query: 1500     tgcacagtatttgctgcagaacagtgtgaagcagtattctggaaagtttttctaagacta 1559
                ||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 48764144 tgcagggtatttgctgcagaacagtgtgaagcagtcttctggaaagtttttccaagacta 48764203

                                                                            
Query: 1560     gtgaagaactgaaggagtcctgcatc-------nnnnnnnnnnnnatctgcttctgttca 1612
                ||||||||||||||||||||||||||                   |||||||| |||| |
Sbjct: 48764204 gtgaagaactgaaggagtcctgcatcttttttttttttttttttaatctgcttttgttta 48764263

                                                                            
Query: 1613     aaaagccaacattcctctgcttcataggtgttctgcatttgaggtgtagtgaaatctttg 1672
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48764264 aaaagccagcattcctctgcttcataggtgttctgcatttgaggtgtagtgaaatctttg 48764323

                                                                            
Query: 1673     ctgttcaccagatgtaatgttttagttcttacaaacagggttnnnnnnnnnnnnagggcg 1732
                ||||| ||||||||||||||||||||||||||| ||||||||            ||| | 
Sbjct: 48764324 ctgttaaccagatgtaatgttttagttcttacagacagggttggtgggtaggggaggtca 48764383

                                                                            
Query: 1733     tgcaaaaactaacattgaaattttgaaacagcagcagagtgagtgaattttaatttttgt 1792
                 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 48764384 agcaaaaactaacattgaaattatgaaacagcagcagagtgagtgaattttaatttttgt 48764443

                                
Query: 1793     tcattgttggtggttt 1808
                ||||||||||||||||
Sbjct: 48764444 tcattgttggtggttt 48764459



 Score =  385 bits (194), Expect = e-104
 Identities = 325/376 (86%), Gaps = 8/376 (2%)
 Strand = Plus / Plus

                                                                            
Query: 1440     tttagaagggtccgaagatcggatcattaccattacaggaacacaggaccagatacagaa 1499
                |||||||||||| |||| | |||| ||||||||||||||| ||||||||  |||||||||
Sbjct: 48832626 tttagaagggtcggaagcttggataattaccattacaggagcacaggact-gatacagaa 48832684

                                                                            
Query: 1500     tgcacagtatttgctgcagaacagtgtgaagcagtattctggaaagtttttctaagacta 1559
                ||||  ||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 48832685 tgcagggtatttgctgcagaacagtgtgaagcagtcttctggaaagtttttccaagacta 48832744

                                                                            
Query: 1560     gtgaagaactgaaggagtcctgcatc-------nnnnnnnnnnnnatctgcttctgttca 1612
                ||||||||||||||||||||||||||                   |||||||| |||| |
Sbjct: 48832745 gtgaagaactgaaggagtcctgcatcttttttttttttttttttaatctgcttttgttta 48832804

                                                                            
Query: 1613     aaaagccaacattcctctgcttcataggtgttctgcatttgaggtgtagtgaaatctttg 1672
                |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48832805 aaaagccagcattcctctgcttcataggtgttctgcatttgaggtgtagtgaaatctttg 48832864

                                                                            
Query: 1673     ctgttcaccagatgtaatgttttagttcttacaaacagggttnnnnnnnnnnnnagggcg 1732
                ||||| ||||||||||||||||||||||||||| ||||||||            ||| | 
Sbjct: 48832865 ctgttaaccagatgtaatgttttagttcttacagacagggttggtgggtaggggaggtca 48832924

                                                                            
Query: 1733     tgcaaaaactaacattgaaattttgaaacagcagcagagtgagtgaattttaatttttgt 1792
                 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 48832925 agcaaaaactaacattgaaattatgaaacagcagcagagtgagtgaattttaatttttgt 48832984

                                
Query: 1793     tcattgttggtggttt 1808
                ||||||||||||||||
Sbjct: 48832985 tcattgttggtggttt 48833000



 Score =  196 bits (99), Expect = 4e-47
 Identities = 105/107 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1896     gtaacaatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctc 1955
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48764810 gtaacgatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctc 48764869

                                                               
Query: 1956     ttttgtaagaaacgttttatgatttttaaaataaatttagtgaacct 2002
                |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 48764870 ttttgtaagaaacgttttatgatttttaaaataaatgtagtgaacct 48764916



 Score =  196 bits (99), Expect = 4e-47
 Identities = 105/107 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1896     gtaacaatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctc 1955
                ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48833351 gtaacgatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctc 48833410

                                                               
Query: 1956     ttttgtaagaaacgttttatgatttttaaaataaatttagtgaacct 2002
                |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 48833411 ttttgtaagaaacgttttatgatttttaaaataaatgtagtgaacct 48833457


>Sscrofa_Chr07 
||          Length = 134764511

 Score =  139 bits (70), Expect = 8e-30
 Identities = 94/101 (93%), Gaps = 2/101 (1%)
 Strand = Plus / Plus

                                                                             
Query: 1598      atctgcttctgttcaaaaagccaacattcctctgcttcataggtgttctgcatttgaggt 1657
                 ||||||||||||| ||||||| |||||| |||||||||||  ||||||||||||||||||
Sbjct: 104708468 atctgcttctgtttaaaaagctaacatttctctgcttcat--gtgttctgcatttgaggt 104708525

                                                          
Query: 1658      gtagtgaaatctttgctgttcaccagatgtaatgttttagt 1698
                 ||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 104708526 gtagtaaaatctttgctcttcaccagatgtaatgttttagt 104708566



 Score =  125 bits (63), Expect = 1e-25
 Identities = 85/91 (93%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                            
Query: 1896     gtaacaatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctc 1955
                |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 14673010 gtaacaatagtctatatgttcctggcatctattcagaacagtgtgcagaatgtaatgctt 14672951

                                               
Query: 1956     ttt-tgtaagaaacgttttatgatttttaaa 1985
                ||| |||||||||||||||||| ||||||||
Sbjct: 14672950 tttatgtaagaaacgttttatggtttttaaa 14672920


>gb|GL893753.2| Sus scrofa unplaced genomic scaffold ChrUScaf1638
          Length = 102689

 Score =  105 bits (53), Expect = 1e-19
 Identities = 77/85 (90%)
 Strand = Plus / Plus

                                                                         
Query: 1897  taacaatagtccatatgtccctggcatctattcagagcagtgtgcagaatgtaatgctct 1956
             ||||||||||| |||| || |||||||||| ||||| ||||||||||||||||||| || 
Sbjct: 67625 taacaatagtctatatatctctggcatctactcagaacagtgtgcagaatgtaatgttcc 67684

                                      
Query: 1957  tttgtaagaaacgttttatgatttt 1981
             |||||||||||| ||||||||||||
Sbjct: 67685 tttgtaagaaacattttatgatttt 67709


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 59,251,734
Number of extensions: 860
Number of successful extensions: 860
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 840
Number of HSP's successfully gapped: 74
Length of query: 2297
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2275
Effective length of database: 2,808,408,574
Effective search space: 6389129505850
Effective search space used: 6389129505850
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)