Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007444
(1039 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039609.1| PHD finger protein 11 [Bos taurus]. 237 1e-62
Alignment gi|NP_001069237.1| PHD finger protein 6 [Bos taurus]. 108 1e-23
Alignment gi|XP_002693122.1| PREDICTED: myeloid/lymphoid or mixed-lineage... 78 1e-14
Alignment gi|XP_585092.4| PREDICTED: myeloid/lymphoid or mixed-lineage le... 78 1e-14
Alignment gi|NP_001033760.2| G2/M phase-specific E3 ubiquitin-protein lig... 74 2e-13
Alignment gi|XP_002696740.1| PREDICTED: G2/M-phase specific E3 ubiquitin ... 74 2e-13
Alignment gi|XP_001790307.1| PREDICTED: G2/M-phase specific E3 ubiquitin ... 74 2e-13
Alignment gi|XP_002697069.1| PREDICTED: PHD finger protein 7-like [Bos ta... 62 8e-10
Alignment gi|XP_002687353.1| PREDICTED: myeloid/lymphoid or mixed-lineage... 49 1e-05
Alignment gi|XP_583302.4| PREDICTED: myeloid/lymphoid or mixed-lineage le... 49 1e-05
>ref|NP_001039609.1| PHD finger protein 11 [Bos taurus].
Length = 337
Score = 237 bits (604), Expect = 1e-62
Identities = 117/167 (70%), Positives = 128/167 (76%), Gaps = 4/167 (2%)
Frame = +2
Query: 41 MDAAWPSDPXXXXXXXXXXX----DGVPLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFS 208
MD A PS P D VPLPTGVF VAE+LQKR CALCP+DL+ SVLYF+
Sbjct: 1 MDTAGPSAPESTRGASWSEAQAARDIVPLPTGVFQVAERLQKRICALCPKDLECSVLYFA 60
Query: 209 QSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKKGATV 388
QSE++AAHENCLLYSS LVECE +PS+++RNFDVESVKKEIKRGRKLKCTFCGKKGATV
Sbjct: 61 QSENIAAHENCLLYSSALVECEDYDPSNNDRNFDVESVKKEIKRGRKLKCTFCGKKGATV 120
Query: 389 GCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGP 529
GCDLKSC KNYHFFCAK DHAVLQ D G Y+VFC HA Q P
Sbjct: 121 GCDLKSCFKNYHFFCAKNDHAVLQADGRTGIYKVFCQQHADPQNDLP 167
>ref|NP_001069237.1| PHD finger protein 6 [Bos taurus].
Length = 365
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 2e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 339
>ref|XP_002693122.1| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila)-like, partial [Bos taurus].
Length = 3821
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 1727 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1775
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 1776 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1830
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 1831 QRHRDLIKGEVVPENG 1846
>ref|XP_585092.4| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia protein [Bos
taurus].
Length = 3826
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 1732 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1780
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 1781 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1835
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 1836 QRHRDLIKGEVVPENG 1851
>ref|NP_001033760.2| G2/M phase-specific E3 ubiquitin-protein ligase [Bos taurus].
Length = 703
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSVLY----FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q TC C ++ D + Y ++ +L H CLL SSG+ + + + F +E
Sbjct: 10 QNSTCVFCRKNDDCPIKYGEKKTNEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE+ R KLKC+ C K GA++GC C ++YHF C + + Q G + FC
Sbjct: 68 DIRKEVTRASKLKCSVCKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 124
Query: 497 THHAGTQ 517
H Q
Sbjct: 125 WKHRPVQ 131
>ref|XP_002696740.1| PREDICTED: G2/M-phase specific E3 ubiquitin ligase [Bos taurus].
Length = 728
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSVLY----FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q TC C ++ D + Y ++ +L H CLL SSG+ + + + F +E
Sbjct: 35 QNSTCVFCRKNDDCPIKYGEKKTNEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 92
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE+ R KLKC+ C K GA++GC C ++YHF C + + Q G + FC
Sbjct: 93 DIRKEVTRASKLKCSVCKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 149
Query: 497 THHAGTQ 517
H Q
Sbjct: 150 WKHRPVQ 156
>ref|XP_001790307.1| PREDICTED: G2/M-phase specific E3 ubiquitin ligase [Bos taurus].
Length = 703
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSVLY----FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q TC C ++ D + Y ++ +L H CLL SSG+ + + + F +E
Sbjct: 10 QNSTCVFCRKNDDCPIKYGEKKTNEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE+ R KLKC+ C K GA++GC C ++YHF C + + Q G + FC
Sbjct: 68 DIRKEVTRASKLKCSVCKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 124
Query: 497 THHAGTQ 517
H Q
Sbjct: 125 WKHRPVQ 131
>ref|XP_002697069.1| PREDICTED: PHD finger protein 7-like [Bos taurus].
Length = 344
Score = 62.0 bits (149), Expect = 8e-10
Identities = 41/131 (31%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Frame = +2
Query: 161 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
C LC PE L F Q ++L+ H CL+ SS L + N H F E +
Sbjct: 34 CRLCLQEPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KE R + C C +KGA + C C +N+H C + + Q G Y+ FC
Sbjct: 88 RKEAARASRKICFVCKRKGAAINCQKDQCARNFHLPCGLERGCLSQ---FFGEYKSFCGE 144
Query: 503 HAGTQKAGPEN 535
H TQ N
Sbjct: 145 HRPTQNIRRRN 155
>ref|XP_002687353.1| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia 2-like [Bos
taurus].
Length = 5503
Score = 48.5 bits (114), Expect = 1e-05
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = +2
Query: 155 RTCALCPED----LDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
R C C E+ D + DL H NC L+S+ + E + + +V
Sbjct: 4996 RRCCFCHEEGDGATDGPARLLNLDLDLWVHLNCALWSTEVYETQGGA---------LMNV 5046
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ + RG KC+ C + GAT C+ C YHF CA + + DK
Sbjct: 5047 EVALHRGLLTKCSLCQRTGATSSCNRMRCPNVYHFACAIRAKCMFFKDK 5095
>ref|XP_583302.4| PREDICTED: myeloid/lymphoid or mixed-lineage leukemia 2 [Bos taurus].
Length = 5503
Score = 48.5 bits (114), Expect = 1e-05
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Frame = +2
Query: 155 RTCALCPED----LDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
R C C E+ D + DL H NC L+S+ + E + + +V
Sbjct: 4996 RRCCFCHEEGDGATDGPARLLNLDLDLWVHLNCALWSTEVYETQGGA---------LMNV 5046
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ + RG KC+ C + GAT C+ C YHF CA + + DK
Sbjct: 5047 EVALHRGLLTKCSLCQRTGATSSCNRMRCPNVYHFACAIRAKCMFFKDK 5095
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,307,531
Number of extensions: 904968
Number of successful extensions: 2002
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 1992
Number of HSP's successfully gapped: 11
Length of query: 346
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,273,310
Effective search space: 3468414330
Effective search space used: 3468414330
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007444
(1039 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850073.1| PREDICTED: similar to PHD finger protein 11 (BR... 200 2e-51
Alignment gi|XP_866100.1| PREDICTED: similar to PHD finger protein 6 isof... 108 1e-23
Alignment gi|XP_866088.1| PREDICTED: similar to PHD finger protein 6 isof... 108 1e-23
Alignment gi|XP_866071.1| PREDICTED: similar to PHD finger protein 6 isof... 108 1e-23
Alignment gi|XP_852628.1| PREDICTED: similar to PHD finger protein 6 isof... 108 1e-23
Alignment gi|XP_536554.2| PREDICTED: similar to myeloid/lymphoid or mixed... 78 1e-14
Alignment gi|XP_547761.2| PREDICTED: similar to PHD finger protein 7 (pre... 70 3e-12
Alignment gi|XP_859383.1| PREDICTED: similar to PHD finger protein 7 isof... 67 3e-11
Alignment gi|XP_533800.2| PREDICTED: similar to PHD finger protein 7 isof... 67 3e-11
Alignment gi|XP_853798.1| PREDICTED: similar to myeloid/lymphoid or mixed... 58 1e-08
>ref|XP_850073.1| PREDICTED: similar to PHD finger protein 11 (BRCA1-C terminus
associated protein) (NY-REN-34 antigen) [Canis
familiaris].
Length = 255
Score = 200 bits (508), Expect = 2e-51
Identities = 87/121 (71%), Positives = 106/121 (87%)
Frame = +2
Query: 146 LQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVK 325
++KRTCALCP+D++YSVLYF+QSE++AAHENCLLYSS LVECE +P + +RNFDVESVK
Sbjct: 1 MEKRTCALCPKDIEYSVLYFAQSENIAAHENCLLYSSALVECEDHDPRNQDRNFDVESVK 60
Query: 326 KEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHH 505
KEI RGRKL C FC ++GATVGCD+K+C ++YHFFCAK DHAVLQTD L+G Y+VFC H
Sbjct: 61 KEIHRGRKLTCAFCNRRGATVGCDVKACNRSYHFFCAKNDHAVLQTDGLRGIYKVFCQQH 120
Query: 506 A 508
A
Sbjct: 121 A 121
>ref|XP_866100.1| PREDICTED: similar to PHD finger protein 6 isoform 1 isoform 4
[Canis familiaris].
Length = 366
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 2e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 229 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 287
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 288 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 340
>ref|XP_866088.1| PREDICTED: similar to PHD finger protein 6 isoform 1 isoform 3
[Canis familiaris].
Length = 361
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 2e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 224 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 282
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 283 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 335
>ref|XP_866071.1| PREDICTED: similar to PHD finger protein 6 isoform 2 isoform 2
[Canis familiaris].
Length = 325
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
>ref|XP_852628.1| PREDICTED: similar to PHD finger protein 6 isoform 1 isoform 1
[Canis familiaris].
Length = 365
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 2e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 339
>ref|XP_536554.2| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia
(trithorax homolog, Drosophila) [Canis familiaris].
Length = 3923
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 1832 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1880
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 1881 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1935
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 1936 QRHRDLIKGEVVPENG 1951
>ref|XP_547761.2| PREDICTED: similar to PHD finger protein 7 (predicted) [Canis
familiaris].
Length = 718
Score = 70.5 bits (171), Expect = 3e-12
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLD----YSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q C C ++ D Y ++ ++ H CLL SSG+ + + + F +E
Sbjct: 22 QNLACVFCRKNDDCPNKYGEKKTNEKWNITVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 79
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE+ R KLKC+ C K GA++GC C ++YHF C + + Q G + FC
Sbjct: 80 DIRKEVNRASKLKCSICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 136
Query: 497 THHAGTQ 517
H Q
Sbjct: 137 WKHRPVQ 143
>ref|XP_859383.1| PREDICTED: similar to PHD finger protein 7 isoform 2 isoform 2
[Canis familiaris].
Length = 344
Score = 67.0 bits (162), Expect = 3e-11
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +2
Query: 161 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
C LC PE L F Q ++L+ H CL+ SS L + N H F E +
Sbjct: 34 CRLCLREPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
KKE R + C C KKGA + C C++N+H C ++ + Q G Y+ FC
Sbjct: 88 KKEAARASRKICFVCKKKGAAINCQKDQCVRNFHLPCGQERGCLSQ---FFGEYKSFCGK 144
Query: 503 HAGTQ-----KAGPEN 535
H TQ KAG E+
Sbjct: 145 HRPTQDIQRGKAGEES 160
>ref|XP_533800.2| PREDICTED: similar to PHD finger protein 7 isoform 1 isoform 1
[Canis familiaris].
Length = 383
Score = 67.0 bits (162), Expect = 3e-11
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +2
Query: 161 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
C LC PE L F Q ++L+ H CL+ SS L + N H F E +
Sbjct: 34 CRLCLREPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
KKE R + C C KKGA + C C++N+H C ++ + Q G Y+ FC
Sbjct: 88 KKEAARASRKICFVCKKKGAAINCQKDQCVRNFHLPCGQERGCLSQ---FFGEYKSFCGK 144
Query: 503 HAGTQ-----KAGPEN 535
H TQ KAG E+
Sbjct: 145 HRPTQDIQRGKAGEES 160
>ref|XP_853798.1| PREDICTED: similar to myeloid/lymphoid or mixed-lineage leukemia 3
isoform 1 [Canis familiaris].
Length = 1041
Score = 58.2 bits (139), Expect = 1e-08
Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +2
Query: 155 RTCALCPED----LDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
R C C E+ D + DL H NC L+S+ + E ++ + +V
Sbjct: 534 RKCCFCHEEGDGLTDGPARLLNLDLDLWVHLNCALWSTEVYETQAGA---------LINV 584
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ ++RG ++KC FC K GAT GC C YHF CA K + DK
Sbjct: 585 ELALRRGLQMKCVFCHKMGATSGCHRFRCTNIYHFTCAIKAQCMFFKDK 633
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,975,469
Number of extensions: 789910
Number of successful extensions: 2068
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 2054
Number of HSP's successfully gapped: 13
Length of query: 346
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 242
Effective length of database: 15,407,560
Effective search space: 3728629520
Effective search space used: 3728629520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007444
(1039 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035533.1| PHD finger protein 11 isoform a [Homo sapien... 218 6e-57
Alignment gi|NP_001035534.1| PHD finger protein 11 isoform b [Homo sapien... 199 3e-51
Alignment gi|NP_115834.1| PHD finger protein 6 isoform 1 [Homo sapiens]. 108 1e-23
Alignment gi|NP_001015877.1| PHD finger protein 6 isoform 1 [Homo sapiens]. 108 1e-23
Alignment gi|NP_115711.2| PHD finger protein 6 isoform 2 [Homo sapiens]. 108 1e-23
Alignment gi|NP_055542.1| histone-lysine N-methyltransferase MLL4 [Homo s... 80 4e-15
Alignment gi|NP_001184033.1| histone-lysine N-methyltransferase MLL isofo... 78 1e-14
Alignment gi|NP_005924.2| histone-lysine N-methyltransferase MLL isoform ... 78 1e-14
Alignment gi|NP_060239.2| G2/M phase-specific E3 ubiquitin-protein ligase... 69 5e-12
Alignment gi|NP_057567.3| PHD finger protein 7 isoform 1 [Homo sapiens]. 66 6e-11
>ref|NP_001035533.1| PHD finger protein 11 isoform a [Homo sapiens].
Length = 331
Score = 218 bits (556), Expect = 6e-57
Identities = 105/162 (64%), Positives = 129/162 (79%)
Frame = +2
Query: 113 LPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSD 292
LPTGVF VAEK++KRTCALCP+D++Y+VLYF+QSE++AAHENCLLYSSGLVECE +P +
Sbjct: 29 LPTGVFQVAEKMEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLN 88
Query: 293 HERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKL 472
+R+FDVESVKKEI+RGRKLKC FC K+GATVGCDLK+C KNYHFFCAKKD AV Q+D +
Sbjct: 89 PDRSFDVESVKKEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGV 148
Query: 473 QGTYRVFCTHHAGTQKAGPENGKSLKFSVVGLKNGTRLGKTG 598
+G Y++ C HA P +S KFS V K G + +G
Sbjct: 149 RGIYKLLCQQHA----QFPIIAQSAKFSGVKRKRGRKKPLSG 186
>ref|NP_001035534.1| PHD finger protein 11 isoform b [Homo sapiens].
Length = 292
Score = 199 bits (506), Expect = 3e-51
Identities = 95/151 (62%), Positives = 119/151 (78%)
Frame = +2
Query: 146 LQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVK 325
++KRTCALCP+D++Y+VLYF+QSE++AAHENCLLYSSGLVECE +P + +R+FDVESVK
Sbjct: 1 MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVK 60
Query: 326 KEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHH 505
KEI+RGRKLKC FC K+GATVGCDLK+C KNYHFFCAKKD AV Q+D ++G Y++ C H
Sbjct: 61 KEIQRGRKLKCKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQH 120
Query: 506 AGTQKAGPENGKSLKFSVVGLKNGTRLGKTG 598
A P +S KFS V K G + +G
Sbjct: 121 A----QFPIIAQSAKFSGVKRKRGRKKPLSG 147
>ref|NP_115834.1| PHD finger protein 6 isoform 1 [Homo sapiens].
Length = 365
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 2e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 339
>ref|NP_001015877.1| PHD finger protein 6 isoform 1 [Homo sapiens].
Length = 365
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 2e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 339
>ref|NP_115711.2| PHD finger protein 6 isoform 2 [Homo sapiens].
Length = 312
Score = 108 bits (269), Expect = 1e-23
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
>ref|NP_055542.1| histone-lysine N-methyltransferase MLL4 [Homo sapiens].
Length = 2715
Score = 79.7 bits (195), Expect = 4e-15
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = +2
Query: 155 RTCALCPE--DLDYS----VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC + D D +LY Q+E H NC ++S+ + E E + ++
Sbjct: 1579 RQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFE---------ENDGSLK 1627
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RGR+++C C K GATVGC L SCL N+HF CA+ + + Q DK +VFC
Sbjct: 1628 NVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDK-----KVFC 1682
Query: 497 THH 505
H
Sbjct: 1683 QKH 1685
>ref|NP_001184033.1| histone-lysine N-methyltransferase MLL isoform 1 precursor [Homo
sapiens].
Length = 3972
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 1874 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1922
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 1923 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1977
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 1978 QRHRDLIKGEVVPENG 1993
>ref|NP_005924.2| histone-lysine N-methyltransferase MLL isoform 2 precursor [Homo
sapiens].
Length = 3969
Score = 78.2 bits (191), Expect = 1e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 1871 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1919
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 1920 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1974
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 1975 QRHRDLIKGEVVPENG 1990
>ref|NP_060239.2| G2/M phase-specific E3 ubiquitin-protein ligase [Homo sapiens].
Length = 706
Score = 69.3 bits (168), Expect = 5e-12
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLD----YSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q C C + D Y + +L H CLL SSG+ + + + F +E
Sbjct: 10 QNLACVFCRKHDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE+ R KLKC C K GA++GC C ++YHF C + + Q G + FC
Sbjct: 68 DIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNFASFC 124
Query: 497 THHAGTQ 517
H Q
Sbjct: 125 WDHRPVQ 131
>ref|NP_057567.3| PHD finger protein 7 isoform 1 [Homo sapiens].
Length = 381
Score = 65.9 bits (159), Expect = 6e-11
Identities = 36/105 (34%), Positives = 51/105 (48%)
Frame = +2
Query: 203 FSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKKGA 382
F Q ++++ H CL+ SS L + N H F E +KKE R + C C KKGA
Sbjct: 49 FLQKDNISVHYFCLILSSKLPQRGQSNRGFH--GFLPEDIKKEAARASRKICFVCKKKGA 106
Query: 383 TVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQ 517
+ C CL+N+H C ++ + Q G Y+ FC H TQ
Sbjct: 107 AINCQKDQCLRNFHLPCGQERGCLSQ---FFGEYKSFCDKHRPTQ 148
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,405,294
Number of extensions: 774591
Number of successful extensions: 2099
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2088
Number of HSP's successfully gapped: 15
Length of query: 346
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 243
Effective length of database: 14,901,872
Effective search space: 3621154896
Effective search space used: 3621154896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007444
(1039 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_766191.1| PHD finger protein 11-like [Mus musculus]. 181 1e-45
Alignment gi|NP_001157801.1| PHD finger protein 11 family member [Mus mus... 180 1e-45
Alignment gi|NP_001157799.1| PHD finger protein 11 family member [Mus mus... 180 1e-45
Alignment gi|NP_950180.3| PHD finger protein 11 family member [Mus muscul... 177 9e-45
Alignment gi|NP_001157761.1| PHD finger protein 11 family member [Mus mus... 156 2e-38
Alignment gi|NP_081918.1| PHD finger protein 6 [Mus musculus]. 108 9e-24
Alignment gi|NP_083550.2| histone-lysine N-methyltransferase MLL4 [Mus mu... 80 3e-15
Alignment gi|NP_001074518.1| histone-lysine N-methyltransferase MLL [Mus ... 78 1e-14
Alignment gi|NP_001161436.1| G2/M phase-specific E3 ubiquitin-protein lig... 68 1e-11
Alignment gi|NP_001161435.1| G2/M phase-specific E3 ubiquitin-protein lig... 68 1e-11
>ref|NP_766191.1| PHD finger protein 11-like [Mus musculus].
Length = 293
Score = 181 bits (458), Expect = 1e-45
Identities = 82/133 (61%), Positives = 104/133 (78%)
Frame = +2
Query: 110 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 289
P+P G + EK++KRTCALCPE ++S +YFS S ++ AHENCLLYSSGLVECE+ +
Sbjct: 11 PVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSPSANIVAHENCLLYSSGLVECEAPDLP 70
Query: 290 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ RNFDV+SVKKEI RGR+LKC+FC KGAT+G DL+SC KNYH CA +DHA+LQ D+
Sbjct: 71 NTVRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGYDLQSCTKNYHLSCAMEDHAILQVDE 130
Query: 470 LQGTYRVFCTHHA 508
GTY++FC HA
Sbjct: 131 DHGTYKLFCQKHA 143
>ref|NP_001157801.1| PHD finger protein 11 family member [Mus musculus].
Length = 202
Score = 180 bits (457), Expect = 1e-45
Identities = 81/133 (60%), Positives = 106/133 (79%)
Frame = +2
Query: 110 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 289
P+P G + EK++KRTCALCPE +++ +YF+ S ++AAHENCLLYSSGLVECE+ +
Sbjct: 11 PVPNGDSPIIEKMEKRTCALCPEGHEWNHIYFAPSLNIAAHENCLLYSSGLVECEAPDLP 70
Query: 290 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ RNFDV+SVKKEI RGR+LKC+FC KGAT+GCDL+SC KNYH CA +D+A+LQ D+
Sbjct: 71 NTVRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGCDLQSCTKNYHLSCAMEDNAILQVDE 130
Query: 470 LQGTYRVFCTHHA 508
GTY++FC HA
Sbjct: 131 DHGTYKLFCQKHA 143
>ref|NP_001157799.1| PHD finger protein 11 family member [Mus musculus].
Length = 276
Score = 180 bits (457), Expect = 1e-45
Identities = 82/133 (61%), Positives = 104/133 (78%)
Frame = +2
Query: 110 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 289
P+P G + EK++KRTCALCPE ++S +YFS S ++ AHENCLLYSSGLVE E+ +
Sbjct: 11 PVPNGDCPIIEKMEKRTCALCPEGHEWSQIYFSPSGNIVAHENCLLYSSGLVESEAPDLP 70
Query: 290 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ RNFDV+SVKKEI RGR+LKC+FC KGAT+GCDL+SC KNYH CA +DHA+LQ D+
Sbjct: 71 NTIRNFDVKSVKKEIGRGRRLKCSFCKNKGATMGCDLQSCTKNYHLSCAMEDHAILQVDE 130
Query: 470 LQGTYRVFCTHHA 508
GTY++FC HA
Sbjct: 131 DHGTYKLFCQKHA 143
>ref|NP_950180.3| PHD finger protein 11 family member [Mus musculus].
Length = 320
Score = 177 bits (450), Expect = 9e-45
Identities = 83/142 (58%), Positives = 106/142 (74%)
Frame = +2
Query: 110 PLPTGVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPS 289
P+ G + EK++KRTCALCPE ++S +YFS S ++ AHENCLLYSSGLVECE+ +
Sbjct: 11 PVSRGDSPIIEKMEKRTCALCPEGHEWSQIYFSPSGNIVAHENCLLYSSGLVECETLDLR 70
Query: 290 DHERNFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ RNFDV+SVKKEI RGR+LKC+FC K GATVGCDL C K+YH+ CAKKD A+LQ D
Sbjct: 71 NTIRNFDVKSVKKEIWRGRRLKCSFCNKGGATVGCDLWFCKKSYHYVCAKKDQAILQVDG 130
Query: 470 LQGTYRVFCTHHAGTQKAGPEN 535
GTY++FC H+ Q+ E+
Sbjct: 131 NHGTYKLFCPEHSPEQEEATES 152
>ref|NP_001157761.1| PHD finger protein 11 family member [Mus musculus].
Length = 339
Score = 156 bits (395), Expect = 2e-38
Identities = 78/145 (53%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Frame = +2
Query: 122 GVFHVAEKLQKRTCALCPEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHER 301
G + EK++KRTCALCPE D+SV+YF S ++AAHENCLLYSSGLVECE+ NP R
Sbjct: 35 GFCQLTEKMEKRTCALCPEGHDWSVIYFVPSANIAAHENCLLYSSGLVECEAHNPCKIAR 94
Query: 302 NFDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGT 481
N DV+SV + I RG + C+FC +GA V C SC KNYH FCAK+D+AVLQ + T
Sbjct: 95 NVDVKSVLERIWRGSTMICSFCNNEGAIVRCGETSCAKNYHLFCAKEDYAVLQ-GGVTRT 153
Query: 482 YRVFCTHHAGTQKAGPE--NGKSLK 550
Y++FC H Q+ E +G S+K
Sbjct: 154 YKLFCPEHPPQQEEATESADGPSMK 178
>ref|NP_081918.1| PHD finger protein 6 [Mus musculus].
Length = 364
Score = 108 bits (269), Expect = 9e-24
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 1e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 228 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 286
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 287 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 339
>ref|NP_083550.2| histone-lysine N-methyltransferase MLL4 [Mus musculus].
Length = 2713
Score = 79.7 bits (195), Expect = 3e-15
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = +2
Query: 155 RTCALCPE--DLDYS----VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC + D D +LY Q+E H NC ++S+ + E E + ++
Sbjct: 1585 RQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFE---------ENDGSLK 1633
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RGR+++C C K GATVGC L SCL N+HF CA+ + + Q DK +VFC
Sbjct: 1634 NVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDK-----KVFC 1688
Query: 497 THH 505
H
Sbjct: 1689 QKH 1691
>ref|NP_001074518.1| histone-lysine N-methyltransferase MLL [Mus musculus].
Length = 3963
Score = 77.8 bits (190), Expect = 1e-14
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 1870 RQCALCLMYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 1918
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 1919 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 1973
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 1974 QRHRDLIKGEVVPENG 1989
>ref|NP_001161436.1| G2/M phase-specific E3 ubiquitin-protein ligase isoform 3 [Mus
musculus].
Length = 622
Score = 67.8 bits (164), Expect = 1e-11
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSVLYFSQSE----DLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q C C ++ D Y + + + H CLL SSG+ + + + F +E
Sbjct: 10 QSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE++R KLKCT C K GA++GC + +C ++YH C + + Q + FC
Sbjct: 68 DIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQKECIFQ---FTDNFASFC 124
Query: 497 THHAGTQ 517
H Q
Sbjct: 125 WKHRPVQ 131
>ref|NP_001161435.1| G2/M phase-specific E3 ubiquitin-protein ligase isoform 2 [Mus
musculus].
Length = 739
Score = 67.8 bits (164), Expect = 1e-11
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 4/127 (3%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSVLYFSQSE----DLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
Q C C ++ D Y + + + H CLL SSG+ + + + F +E
Sbjct: 10 QSLACVFCRKNDDCPNKYGEKKTYEKWNFSVHYYCLLMSSGIWQRGKEEEGVY--GFLIE 67
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
++KE++R KLKCT C K GA++GC + +C ++YH C + + Q + FC
Sbjct: 68 DIRKEVQRASKLKCTVCKKNGASIGCVVPTCKRSYHLPCGLQKECIFQ---FTDNFASFC 124
Query: 497 THHAGTQ 517
H Q
Sbjct: 125 WKHRPVQ 131
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,621,749
Number of extensions: 669477
Number of successful extensions: 1776
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1764
Number of HSP's successfully gapped: 15
Length of query: 346
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 244
Effective length of database: 12,553,887
Effective search space: 3063148428
Effective search space used: 3063148428
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007444
(1039 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172032.1| PHD finger protein 6 [Sus scrofa]. 108 6e-24
Alignment gi|XP_003127115.2| PREDICTED: histone-lysine N-methyltransferas... 80 2e-15
Alignment gi|XP_003357368.1| PREDICTED: histone-lysine N-methyltransferas... 78 7e-15
Alignment gi|XP_001928248.2| PREDICTED: PHD finger protein 7 isoform 1 [S... 65 6e-11
Alignment gi|XP_001927828.3| PREDICTED: g2/M phase-specific E3 ubiquitin-... 62 5e-10
Alignment gi|XP_003356747.1| PREDICTED: g2/M phase-specific E3 ubiquitin-... 62 5e-10
Alignment gi|XP_003134598.1| PREDICTED: histone-lysine N-methyltransferas... 60 2e-09
>ref|NP_001172032.1| PHD finger protein 6 [Sus scrofa].
Length = 366
Score = 108 bits (269), Expect = 6e-24
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Frame = +2
Query: 149 QKRTCALCPEDLDYSV--LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
++R C C + D L S+++ +AAH C+L+SS LV SDN S F +E V
Sbjct: 13 RQRKCGFCKSNRDKECGQLLISENQKVAAHHKCMLFSSALVSSHSDNES--LGGFSIEDV 70
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
+KEIKRG KL C+ C GAT+GCD+K+C + YH+ CA D A ++ QG Y V+C
Sbjct: 71 QKEIKRGTKLMCSLCHCPGATIGCDVKTCHRTYHYHCALHDKAQIREKPSQGIYMVYCRK 130
Query: 503 HAGT 514
H T
Sbjct: 131 HKKT 134
Score = 100 bits (250), Expect = 1e-21
Identities = 41/113 (36%), Positives = 76/113 (67%)
Frame = +2
Query: 197 LYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESVKKEIKRGRKLKCTFCGKK 376
L+ ++ AAH C+L+SSG V+ + + ++ +FD+++V +EIKRG+++KCT C +
Sbjct: 229 LHIFNAKKAAAHYKCMLFSSGTVQLTTTSRAEFG-DFDIKTVLQEIKRGKRMKCTLCSQP 287
Query: 377 GATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTHHAGTQKAGPEN 535
GAT+GC++K+C+K YH+ C +D A + +G Y+++C +H+G + E+
Sbjct: 288 GATIGCEIKACVKTYHYHCGVQDKAKYIENMSRGIYKLYCKNHSGNDERDEED 340
>ref|XP_003127115.2| PREDICTED: histone-lysine N-methyltransferase MLL4-like [Sus scrofa].
Length = 2721
Score = 79.7 bits (195), Expect = 2e-15
Identities = 46/123 (37%), Positives = 66/123 (53%), Gaps = 6/123 (4%)
Frame = +2
Query: 155 RTCALCPE--DLDYS----VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC + D D +LY Q+E H NC ++S+ + E E + ++
Sbjct: 1585 RQCALCLKYGDADSKEAGRLLYIGQNE--WTHVNCAIWSAEVFE---------ENDGSLK 1633
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RGR+++C C K GATVGC L SCL N+HF CA+ + + Q DK +VFC
Sbjct: 1634 NVHAAVARGRQMRCELCLKPGATVGCCLSSCLSNFHFMCARASYCIFQDDK-----KVFC 1688
Query: 497 THH 505
H
Sbjct: 1689 QKH 1691
>ref|XP_003357368.1| PREDICTED: histone-lysine N-methyltransferase MLL, partial [Sus
scrofa].
Length = 2733
Score = 78.2 bits (191), Expect = 7e-15
Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
Frame = +2
Query: 155 RTCALCPEDLDYS------VLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVE 316
R CALC D S +LY Q+E H NC L+S+ + E + + ++
Sbjct: 637 RQCALCLTYGDDSANDAGRLLYIGQNE--WTHVNCALWSAEVFEDDDGS---------LK 685
Query: 317 SVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFC 496
+V + RG++L+C FC K GATVGC L SC NYHF C++ + V DK +V+C
Sbjct: 686 NVHMAVIRGKQLRCEFCQKPGATVGCCLTSCTSNYHFMCSRAKNCVFLDDK-----KVYC 740
Query: 497 THHAGTQKAG--PENG 538
H K PENG
Sbjct: 741 QRHRDLIKGEVVPENG 756
>ref|XP_001928248.2| PREDICTED: PHD finger protein 7 isoform 1 [Sus scrofa].
Length = 384
Score = 65.1 bits (157), Expect = 6e-11
Identities = 42/125 (33%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Frame = +2
Query: 161 CALC------PEDLDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
C LC PE L F Q ++L+ H CL+ SS L + N H F E +
Sbjct: 34 CRLCLREPGDPEKLGE----FLQKDNLSVHYFCLILSSKLPQRGQSNRGFH--GFLPEDI 87
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTYRVFCTH 502
KKE R + C C KKGA + C C++N+H C ++ + Q G Y+ FC
Sbjct: 88 KKEAARASRKICFVCKKKGAAINCQKDHCVRNFHLPCGQERGCLSQ---FFGEYKSFCGK 144
Query: 503 HAGTQ 517
H TQ
Sbjct: 145 HRPTQ 149
>ref|XP_001927828.3| PREDICTED: g2/M phase-specific E3 ubiquitin-protein ligase isoform
1 [Sus scrofa].
Length = 659
Score = 62.0 bits (149), Expect = 5e-10
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 305 FDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTY 484
F +E +KKE+ R KLKC C K GA++GC C ++YHF C + + Q G +
Sbjct: 18 FLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNF 74
Query: 485 RVFCTHHAGTQKAGPEN-GKSLKFSV 559
FC +H Q N G SL ++
Sbjct: 75 ASFCWNHRPVQMITSNNYGDSLPCTI 100
>ref|XP_003356747.1| PREDICTED: g2/M phase-specific E3 ubiquitin-protein ligase isoform
2 [Sus scrofa].
Length = 659
Score = 62.0 bits (149), Expect = 5e-10
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +2
Query: 305 FDVESVKKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDKLQGTY 484
F +E +KKE+ R KLKC C K GA++GC C ++YHF C + + Q G +
Sbjct: 18 FLIEDIKKEVTRASKLKCCICKKTGASIGCVAPRCKRSYHFPCGLQRECIFQ---FTGNF 74
Query: 485 RVFCTHHAGTQKAGPEN-GKSLKFSV 559
FC +H Q N G SL ++
Sbjct: 75 ASFCWNHRPVQMITSNNYGDSLPCTI 100
>ref|XP_003134598.1| PREDICTED: histone-lysine N-methyltransferase MLL3-like [Sus
scrofa].
Length = 626
Score = 60.1 bits (144), Expect = 2e-09
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +2
Query: 155 RTCALCPED----LDYSVLYFSQSEDLAAHENCLLYSSGLVECESDNPSDHERNFDVESV 322
R C C E+ D + DL H NC L+S+ + E ++ + +V
Sbjct: 273 RKCCFCHEEGDGLTDGPARLLNLDLDLWVHLNCALWSTEVYETQAGA---------LINV 323
Query: 323 KKEIKRGRKLKCTFCGKKGATVGCDLKSCLKNYHFFCAKKDHAVLQTDK 469
+ ++RG ++KC FC K GAT GC C +YHF CA K + DK
Sbjct: 324 ELALRRGLQMKCVFCHKMGATSGCHRFRCTNSYHFTCAVKAQCMFFRDK 372
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,632,279
Number of extensions: 779697
Number of successful extensions: 1241
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1234
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 246
Effective length of database: 8,854,232
Effective search space: 2178141072
Effective search space used: 2178141072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007444
(1039 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 622 e-176
>Sscrofa_Chr11
|| Length = 87690581
Score = 622 bits (314), Expect = e-176
Identities = 314/314 (100%)
Strand = Plus / Minus
Query: 485 agagtgttttgcacacaccatgctggaacgcaaaaggctggacctgaaaatggtaagtcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536350 agagtgttttgcacacaccatgctggaacgcaaaaggctggacctgaaaatggtaagtcc 18536291
Query: 545 ctaaaatttagtgttgtgggtttgaagaatggtacacgtttgggtaagacagggctgacg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536290 ctaaaatttagtgttgtgggtttgaagaatggtacacgtttgggtaagacagggctgacg 18536231
Query: 605 tcttagctttactcataagttaaagggcacatttttgagctaaattgttacattttcaat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536230 tcttagctttactcataagttaaagggcacatttttgagctaaattgttacattttcaat 18536171
Query: 665 taagctgtcggtctccacacagcgtgcaggagacttttcttctttgtaaactaaaggcga 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536170 taagctgtcggtctccacacagcgtgcaggagacttttcttctttgtaaactaaaggcga 18536111
Query: 725 agcctttgtctggtgtcctgcatcctgactgcagtcagagaaccaaaccaggacactgtc 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18536110 agcctttgtctggtgtcctgcatcctgactgcagtcagagaaccaaaccaggacactgtc 18536051
Query: 785 aagagctttgccct 798
||||||||||||||
Sbjct: 18536050 aagagctttgccct 18536037
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 352 gaaatgcacattttgcggtaaaaagggagccaccgtgggatgtgatttaaaatcctgctt 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18540094 gaaatgcacattttgcggtaaaaagggagccaccgtgggatgtgatttaaaatcctgctt 18540035
Query: 412 gaagaattaccactttttctgtgccaagaaagaccacgcagttctacaaactgataaact 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18540034 gaagaattaccactttttctgtgccaagaaagaccacgcagttctacaaactgataaact 18539975
Query: 472 tcaaggaacttatag 486
|||||||||||||||
Sbjct: 18539974 tcaaggaacttatag 18539960
Score = 244 bits (123), Expect = 8e-62
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 122 ggtgtctttcacgtcgcagagaaattgcaaaaaaggacatgtgcgctctgccccgaagac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18556737 ggtgtctttcacgtcgcagagaaattgcaaaaaaggacatgtgcgctctgccccgaagac 18556678
Query: 182 cttgactatagcgtcctgtacttttcacagtcggaggacctagctgctcatgaaaactgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18556677 cttgactatagcgtcctgtacttttcacagtcggaggacctagctgctcatgaaaactgt 18556618
Query: 242 ttg 244
|||
Sbjct: 18556617 ttg 18556615
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 244 gctgtattcttcaggacttgtggaatgtgagagtgacaatccaagtgaccacgagagaaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18544484 gctgtattcttcaggacttgtggaatgtgagagtgacaatccaagtgaccacgagagaaa 18544425
Query: 304 ttttgacgtggaatcagtaaagaaagaaatcaagagaggaaggaagttg 352
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18544424 ttttgacgtggaatcagtaaagaaagaaatcaagagaggaaggaagttg 18544376
Score = 161 bits (81), Expect = 9e-37
Identities = 112/121 (92%), Gaps = 1/121 (0%)
Strand = Plus / Minus
Query: 919 aaaaagagttttgccttttgtgactgctttcttcctgaaaaactaaaaattttcaatacc 978
|||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 18535919 aaaaagagctttgccttttgtgactgctttcttcctgaaagactaagaattttcaataca 18535860
Query: 979 cggatttgatagcccgtgttatatgtcccctgagaacagtttttctaaagatacatggtt 1038
|||| ||||||| ||||||||||||||||||||| ||||||||||||| ||| |||||||
Sbjct: 18535859 cggaattgatag-ccgtgttatatgtcccctgagtacagtttttctaaggatgcatggtt 18535801
Query: 1039 a 1039
|
Sbjct: 18535800 a 18535800
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 3 aaaaggaacttccgtcggcgcgggcgcagggcgcagccatggacgcggcttggccctccg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18566735 aaaaggaacttccgtcggcgcgggcgcagggcgcagccatggacgcggcttggccctccg 18566676
Query: 63 atcccaa 69
|||||||
Sbjct: 18566675 atcccaa 18566669
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,436,866
Number of extensions: 234
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 6
Length of query: 1039
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1018
Effective length of database: 2,808,413,156
Effective search space: 2858964592808
Effective search space used: 2858964592808
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)