Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007451
(2331 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095625.1| elongation of very long chain fatty acids pr... 516 e-146
Alignment gi|NP_001179235.1| elongation of very long chain fatty acids pr... 244 3e-64
Alignment gi|XP_002698497.1| PREDICTED: elongation of very long chain fat... 244 3e-64
Alignment gi|NP_001071510.1| elongation of very long chain fatty acids pr... 91 6e-18
Alignment gi|NP_001092520.1| elongation of very long chain fatty acids pr... 85 2e-16
Alignment gi|NP_001029875.1| elongation of very long chain fatty acids pr... 78 3e-14
Alignment gi|NP_001040062.1| elongation of very long chain fatty acids pr... 74 4e-13
Alignment gi|NP_001076986.1| elongation of very long chain fatty acids pr... 73 1e-12
>ref|NP_001095625.1| elongation of very long chain fatty acids protein 6 [Bos taurus].
Length = 264
Score = 516 bits (1329), Expect = e-146
Identities = 246/264 (93%), Positives = 254/264 (96%), Gaps = 1/264 (0%)
Frame = +3
Query: 387 MSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKP 566
MSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAF+FGGRH+MNKRAKFELRKP
Sbjct: 1 MSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFVFGGRHLMNKRAKFELRKP 60
Query: 567 LVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAP 746
LVLWSL+LAVFSIFGALRTGAYM+Y +MTKGLK+SVCDQGFYNGPVSKFWAYAFVLSKAP
Sbjct: 61 LVLWSLTLAVFSIFGALRTGAYMVYTVMTKGLKHSVCDQGFYNGPVSKFWAYAFVLSKAP 120
Query: 747 ELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYA 926
ELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNY VHSVMYSYYA
Sbjct: 121 ELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYSVHSVMYSYYA 180
Query: 927 LRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSY 1106
LRAAGFRVSRKFAMFITLSQI QML+GCV+NYLVF WMQ DQCYSHF NIFWSSLMYLSY
Sbjct: 181 LRAAGFRVSRKFAMFITLSQIIQMLIGCVINYLVFQWMQHDQCYSHFQNIFWSSLMYLSY 240
Query: 1107 LVLFCHFFFEAYIG-KMRKTTKAD 1175
VLFCHFFFEAYIG KMRK TKAD
Sbjct: 241 FVLFCHFFFEAYIGSKMRKATKAD 264
>ref|NP_001179235.1| elongation of very long chain fatty acids protein 3 [Bos taurus].
Length = 270
Score = 244 bits (622), Expect = 3e-64
Identities = 118/247 (47%), Positives = 158/247 (63%)
Frame = +3
Query: 405 QEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSL 584
Q Y FE N +++E W SF ++ +Y IF G++ M R F L+ PL++WS
Sbjct: 16 QPYNFELFRNMRP---FLEEYWTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSF 72
Query: 585 SLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 764
LAVFSIFG LR YM +L+ K +VC F + P+ +FW++ FVLSK ELGDT
Sbjct: 73 CLAVFSIFGTLRVWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDTA 132
Query: 765 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGF 944
FIILRK+ LIF+HWYHH TVL+YS + YK+ VA GGWFMTMN+GVH+VMY+YY L+AA
Sbjct: 133 FIILRKRPLIFVHWYHHSTVLVYSSFGYKNKVAAGGWFMTMNFGVHAVMYTYYTLKAAKV 192
Query: 945 RVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCH 1124
+ F M +T QI QM +G V L + W Q+ C++ + FWS ++Y +Y VLF
Sbjct: 193 KSPSWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYATYFVLFAK 252
Query: 1125 FFFEAYI 1145
FF + YI
Sbjct: 253 FFHQNYI 259
>ref|XP_002698497.1| PREDICTED: elongation of very long chain fatty acids (FEN1/Elo2,
SUR4/Elo3, yeast)-like 3 [Bos taurus].
Length = 270
Score = 244 bits (622), Expect = 3e-64
Identities = 118/247 (47%), Positives = 158/247 (63%)
Frame = +3
Query: 405 QEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSL 584
Q Y FE N +++E W SF ++ +Y IF G++ M R F L+ PL++WS
Sbjct: 16 QPYNFELFRNMRP---FLEEYWTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSF 72
Query: 585 SLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 764
LAVFSIFG LR YM +L+ K +VC F + P+ +FW++ FVLSK ELGDT
Sbjct: 73 CLAVFSIFGTLRVWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDTA 132
Query: 765 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGF 944
FIILRK+ LIF+HWYHH TVL+YS + YK+ VA GGWFMTMN+GVH+VMY+YY L+AA
Sbjct: 133 FIILRKRPLIFVHWYHHSTVLVYSSFGYKNKVAAGGWFMTMNFGVHAVMYTYYTLKAAKV 192
Query: 945 RVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCH 1124
+ F M +T QI QM +G V L + W Q+ C++ + FWS ++Y +Y VLF
Sbjct: 193 KSPSWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYATYFVLFAK 252
Query: 1125 FFFEAYI 1145
FF + YI
Sbjct: 253 FFHQNYI 259
>ref|NP_001071510.1| elongation of very long chain fatty acids protein 7 [Bos taurus].
Length = 281
Score = 90.5 bits (223), Expect = 6e-18
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 17/246 (6%)
Frame = +3
Query: 483 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTKG 659
++ Y F+ G +M R FEL+K ++ ++ S+ +FS++ + +I+ G
Sbjct: 39 IILGFYVYFVTSLGPKLMENRKPFELKKVMITYNFSIVLFSVY------MFYEFIMSGWG 92
Query: 660 LKYSV-CDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYH 812
YS CD Y+ V W Y F SK EL DTIF ILRK+ ++ FLH +H
Sbjct: 93 TGYSFRCDIVDYSQSPTALRMVRTCWLYYF--SKFIELLDTIFFILRKKNSQVTFLHVFH 150
Query: 813 HITVLLYSWYSYKDMVAGG-GWFMT-MNYGVHSVMYSYYALRAAG--FRVSRKFAMFITL 980
H T++ ++W+ AGG G F +N VH VMYSYY L A G ++ + ++T
Sbjct: 151 H-TIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGLCALGPDYQKYLWWKKYLTS 209
Query: 981 SQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAYIGKMR 1157
Q+ Q + ++ + + + C FP + + Y +L+LF HF++ AY R
Sbjct: 210 LQLIQFV---LITIHISQFFFMEDCKYQFPVFQYIIMSYGCIFLLLFLHFWYRAYTKGQR 266
Query: 1158 --KTTK 1169
KT K
Sbjct: 267 LPKTVK 272
>ref|NP_001092520.1| elongation of very long chain fatty acids protein 4 [Bos taurus].
Length = 314
Score = 85.1 bits (209), Expect = 2e-16
Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 14/262 (5%)
Frame = +3
Query: 399 TLQEYEFEKQFNENEAIQW-MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVL 575
T++ Y + + W + ++ + +S LY F++ G M R F++R L+L
Sbjct: 22 TVEFYRWTLSITDKRVENWPLMQSPLPTLCISTLYLLFVWLGPKWMKDREPFQMRLVLIL 81
Query: 576 WSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYA----FVLS 737
++ + + + IF L G+Y G Y +C Y+ V + A + +S
Sbjct: 82 YNFGMVLLNLFIFRELLMGSY------NAGYSY-ICQTVDYSDNVHEVRIAAALWWYFIS 134
Query: 738 KAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSV 908
K E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H +
Sbjct: 135 KGIEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQINSFIHVI 194
Query: 909 MYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IF 1079
MYSYY L A G + + + ++T+ Q+ Q V + H FP +
Sbjct: 195 MYSYYGLAAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMH 248
Query: 1080 WSSLMY-LSYLVLFCHFFFEAY 1142
W+ ++Y +S++ LF +F+ Y
Sbjct: 249 WALIVYAVSFIFLFLNFYVRTY 270
>ref|NP_001029875.1| elongation of very long chain fatty acids protein 1 [Bos taurus].
Length = 279
Score = 78.2 bits (191), Expect = 3e-14
Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 656
S L++ +Y G R +M R F+LR +V+++ SL S+ Y++Y +
Sbjct: 33 SILLTYVYFVLSLGPR-IMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 83
Query: 657 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 809
G S CD F N P + A+ F+ SK EL DT+ +LRK+ ++ FLH +
Sbjct: 84 GWLSSYTWRCDPVDFSNNPEALRMVRVAWLFLFSKFIELIDTLIFVLRKKDGQVTFLHVF 143
Query: 810 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLS 983
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 201
Query: 984 QITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
Q++ +V+ + + C +P I MY + VLF +F++++Y
Sbjct: 202 TAIQLIQFVLVSLHISQYYFLPSCNYQYPVIIHLIWMYGTIFFVLFSNFWYQSY 255
>ref|NP_001040062.1| elongation of very long chain fatty acids protein 5 [Bos taurus].
Length = 299
Score = 74.3 bits (181), Expect = 4e-13
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 12/242 (4%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSI--FGALRTG 626
++ +N+ + + S LY ++ G M R F R LV+++L L + S+ F L TG
Sbjct: 27 FLLDNYVPTLVCSILYLLIVWLGPKYMKTRQPFSCRGILVVYNLGLTLLSLYMFCELVTG 86
Query: 627 AYMLYILMTKGLKYSVCDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ- 785
+ +G +Y+ QG +G + W Y F SK E DT F ILRK
Sbjct: 87 VW-------EG-QYNFFCQGTRSGGEADMKIIRVLWWYYF--SKLIEFMDTFFFILRKNN 136
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRA-AGFRVSR 956
++ LH YHH ++L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 137 HQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSIPSMRPYL 196
Query: 957 KFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFE 1136
+ +IT Q+ Q ++ + W C +++ +S + LF +F+ +
Sbjct: 197 WWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLITLFTNFYIQ 252
Query: 1137 AY 1142
Y
Sbjct: 253 TY 254
>ref|NP_001076986.1| elongation of very long chain fatty acids protein 2 [Bos taurus].
Length = 294
Score = 73.2 bits (178), Expect = 1e-12
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 17/253 (6%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
+M +++ +F ++ LY I+ G M R LR L L++L + + S AY
Sbjct: 30 FMLDSYLPTFSLTVLYLLLIWLGNRCMRNRPALSLRGILTLYNLGITLLS--------AY 81
Query: 633 MLYILMTKGLK--YSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ- 785
ML L+ + Y++ Q + + W Y F SK E DTIF +LRK+
Sbjct: 82 MLAELILSSWEGGYNLQCQDLTSAGEADIRVARVLWWYYF--SKLIEFLDTIFFVLRKKT 139
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 959
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 140 SQVTFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 197
Query: 960 F---AMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFP---NIFWSSLMYLSYLVLFC 1121
+ ++T +Q+ Q L+ + H M FP IF SS M ++ ++LF
Sbjct: 198 YLWWKKYLTQAQLVQFLL------TITHTMSAVVRPCGFPLGCLIFQSSYM-MTLVILFL 250
Query: 1122 HFFFEAYIGKMRK 1160
+F+ + Y K K
Sbjct: 251 NFYIQTYRKKPMK 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,687,589
Number of extensions: 2097573
Number of successful extensions: 7320
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 7301
Number of HSP's successfully gapped: 8
Length of query: 777
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 667
Effective length of database: 14,041,694
Effective search space: 9365809898
Effective search space used: 9365809898
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007451
(2331 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545023.2| PREDICTED: similar to ELOVL family member 6, el... 524 e-148
Alignment gi|XP_543985.2| PREDICTED: similar to elongation of very long c... 239 8e-63
Alignment gi|XP_851268.1| PREDICTED: similar to ELOVL family member 7, el... 94 8e-19
Alignment gi|XP_539015.1| PREDICTED: similar to elongation of very long c... 85 3e-16
Alignment gi|XP_539650.2| PREDICTED: similar to elongation of very long c... 77 7e-14
Alignment gi|XP_852962.1| PREDICTED: similar to homolog of yeast long cha... 75 3e-13
Alignment gi|XP_545341.2| PREDICTED: similar to elongation of very long c... 72 2e-12
>ref|XP_545023.2| PREDICTED: similar to ELOVL family member 6, elongation of long chain
fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast) [Canis
familiaris].
Length = 265
Score = 524 bits (1350), Expect = e-148
Identities = 249/265 (93%), Positives = 258/265 (97%)
Frame = +3
Query: 381 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 560
MNMSVL LQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLALQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 561 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 740
KPLVLWSL+LAVFSIFGALRTGAYM+YILMTKGLK SVCDQ FYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQSFYNGPVSKFWAYAFVLSK 120
Query: 741 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 920
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 921 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYL 1100
YALRAAGFRVSRKFAMFITLSQITQML+GCV+NYLVF+WMQ DQC+SHF NIFWSSLMYL
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVINYLVFYWMQHDQCHSHFQNIFWSSLMYL 240
Query: 1101 SYLVLFCHFFFEAYIGKMRKTTKAD 1175
SYLVLFCHFFFEAYIGK RKTTKA+
Sbjct: 241 SYLVLFCHFFFEAYIGKRRKTTKAE 265
>ref|XP_543985.2| PREDICTED: similar to elongation of very long chain fatty acids like
3 [Canis familiaris].
Length = 255
Score = 239 bits (610), Expect = 8e-63
Identities = 113/233 (48%), Positives = 156/233 (66%), Gaps = 1/233 (0%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 656
SF ++ +Y IF G++ M R F L++PL+LWS LAVFSI GA+RT +M +L+ +
Sbjct: 22 SFPIALVYLLLIFVGQNYMKARKGFNLQRPLILWSFCLAVFSILGAVRTWGHMGALLLRR 81
Query: 657 GLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQKLIFLHWYHHITVLLYS 836
LK +VC + N P+ KFW+ F+LSK ELGDT FIILRK+ LIF+HWYHH TVL+Y+
Sbjct: 82 SLKQTVCFSIYINNPIVKFWSCLFLLSKIIELGDTAFIILRKRPLIFVHWYHHSTVLVYT 141
Query: 837 WYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQMLVGCVV 1016
+ YK+ V GGWFMTMNYGVHS+MY YY LRAA + M IT Q+ QM +G +
Sbjct: 142 SFGYKNKVPSGGWFMTMNYGVHSIMYIYYTLRAAKVKSPTWLPMLITSLQLLQMFMGATI 201
Query: 1017 NYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFEAYI-GKMRKTTKA 1172
+ L + W Q+ C++ + FWS ++Y +Y +LF HFF + YI K++ TK+
Sbjct: 202 SILTYIWRQEQGCHTTAEHFFWSLILYATYFILFAHFFHQTYIVPKVKAKTKS 254
>ref|XP_851268.1| PREDICTED: similar to ELOVL family member 7, elongation of long chain
fatty acids [Canis familiaris].
Length = 281
Score = 93.6 bits (231), Expect = 8e-19
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 19/248 (7%)
Frame = +3
Query: 483 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 653
++ LY F+ G +M R +EL+K ++ ++ S+ +FS+ YM Y ++
Sbjct: 39 IILGLYVYFVTSLGPKLMENRKPYELKKAMITYNFSIVLFSV--------YMCYEFVMSG 90
Query: 654 KGLKYSV-CDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 806
G YS C+ Y+ S W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGTGYSFRCEIVDYSQSPSALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 807 YHHITVLLYSWYSYKDMVAGG-GWFMT-MNYGVHSVMYSYYALRAAG--FRVSRKFAMFI 974
+HH T++ ++W+ AGG G F +N VH VMYSYY L A G F+ + ++
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGLSALGPAFQKYLWWKKYL 207
Query: 975 TLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAYIGK 1151
T Q+ Q + +V + + + C FP + + Y +L+LF HF++ AY
Sbjct: 208 TSLQLVQFI---IVTIHIGQFFFMEDCKYQFPVFLYIIMSYGCIFLLLFLHFWYRAYTKG 264
Query: 1152 MR--KTTK 1169
R KT K
Sbjct: 265 QRLPKTVK 272
>ref|XP_539015.1| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 4 [Canis familiaris].
Length = 314
Score = 84.7 bits (208), Expect = 3e-16
Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 14/262 (5%)
Frame = +3
Query: 399 TLQEYEFEKQFNENEAIQW-MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVL 575
T++ Y + + W + ++ + +S LY F++ G M R F++R L++
Sbjct: 22 TVEFYRWTWSITDKRVENWPLMQSPLPTLCISTLYLLFVWLGPKWMKDREPFQMRLVLII 81
Query: 576 WSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYA----FVLS 737
++ + + + IF L G+Y G Y +C Y+ V++ A + +S
Sbjct: 82 YNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSDNVNEVRIAAALWWYFVS 134
Query: 738 KAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSV 908
K E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H +
Sbjct: 135 KGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVI 194
Query: 909 MYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IF 1079
MYSYY L A G + + + ++T+ Q+ Q V + H FP +
Sbjct: 195 MYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMH 248
Query: 1080 WSSLMY-LSYLVLFCHFFFEAY 1142
W+ + Y +S++ LF +F+ Y
Sbjct: 249 WALIAYAISFIFLFLNFYVRTY 270
>ref|XP_539650.2| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 1 [Canis familiaris].
Length = 278
Score = 77.0 bits (188), Expect = 7e-14
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 8/230 (3%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFS---IFGALRTGAYMLYIL 647
S L++ +Y G R +M R F+LR +++++ SL S ++ L +G Y
Sbjct: 33 SILLTYVYFVLSLGPR-IMANRKPFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTW 91
Query: 648 MTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHIT 821
+ YS + V A+ F+ SK EL DT+ ILRK+ ++ FLH +HH +
Sbjct: 92 RCDPVDYSNSPEALRMVRV----AWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH-S 146
Query: 822 VLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQ 995
VL +SW+ + GG G F M N VH VMY YY L A G V++ + + Q
Sbjct: 147 VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMTAIQ 205
Query: 996 MLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
++ +V+ + + C +P I MY + VLF +F++ +Y
Sbjct: 206 LIQFVLVSLHISQYYFMPSCDYQYPVIIHLIWMYGTIFFVLFSNFWYHSY 255
>ref|XP_852962.1| PREDICTED: similar to homolog of yeast long chain polyunsaturated
fatty acid elongatio [Canis familiaris].
Length = 471
Score = 75.1 bits (183), Expect = 3e-13
Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 12/242 (4%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSI--FGALRTG 626
++ +N+ +F+ S +Y ++ G M R F R LV+++L L + S+ F L TG
Sbjct: 199 FLLDNYIPTFICSVIYLLIVWLGPKYMKNRQPFSCRGILVVYNLGLTLLSLYMFCELVTG 258
Query: 627 AYMLYILMTKGLKYSVCDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ- 785
+ +G +Y+ QG + + W Y F SK E DT F ILRK
Sbjct: 259 VW-------EG-RYNFFCQGTRSAGEADMKIIRVLWWYYF--SKLIEFMDTFFFILRKNN 308
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAA-GFRVSR 956
++ LH YHH ++L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 309 HQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYL 368
Query: 957 KFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFE 1136
+ +IT Q+ Q ++ + W C +++ +S + LF +F+ +
Sbjct: 369 WWKKYITQGQLLQFVLTIIQTSCGVIW----PCSFPLGWLYFQIGYMISLIALFTNFYIQ 424
Query: 1137 AY 1142
Y
Sbjct: 425 TY 426
>ref|XP_545341.2| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 2 [Canis familiaris].
Length = 328
Score = 72.4 bits (176), Expect = 2e-12
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
+M +++ +F ++ LY I+ G M R LR L L++L + + S+ Y
Sbjct: 62 FMLDSYLPTFFLTVLYLLSIWLGNKYMKNRHALSLRGILTLYNLGITLLSL--------Y 113
Query: 633 MLYILMTKGLK-------YSVCDQGFYNGPVSK-FWAYAFVLSKAPELGDTIFIILRKQ- 785
ML L+ + + G + V+K W Y F SK+ E DTIF +LRK+
Sbjct: 114 MLAELLLSSWEGGYNLQCQDLTSAGEADVRVAKVLWWYYF--SKSIEFLDTIFFVLRKKT 171
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 959
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 172 SQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 229
Query: 960 F---AMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFP---NIFWSSLMYLSYLVLFC 1121
+ ++T +Q+ Q ++ + H M FP IF SS M L+ ++LF
Sbjct: 230 YLWWKKYLTQAQLVQFVL------TITHTMSAVVKPCGFPLGCLIFQSSYM-LTLVILFL 282
Query: 1122 HFFFEAY 1142
+F+ + Y
Sbjct: 283 NFYAQTY 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 84,931,959
Number of extensions: 2119890
Number of successful extensions: 7268
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7244
Number of HSP's successfully gapped: 7
Length of query: 777
Length of database: 18,874,504
Length adjustment: 111
Effective length of query: 666
Effective length of database: 15,174,208
Effective search space: 10106022528
Effective search space used: 10106022528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007451
(2331 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124193.1| elongation of very long chain fatty acids pr... 529 e-150
Alignment gi|NP_076995.1| elongation of very long chain fatty acids prote... 529 e-150
Alignment gi|NP_689523.1| elongation of very long chain fatty acids prote... 244 3e-64
Alignment gi|NP_001098028.1| elongation of very long chain fatty acids pr... 89 1e-17
Alignment gi|NP_079206.2| elongation of very long chain fatty acids prote... 89 1e-17
Alignment gi|NP_073563.1| elongation of very long chain fatty acids prote... 86 2e-16
Alignment gi|NP_073732.1| elongation of very long chain fatty acids prote... 76 2e-13
Alignment gi|NP_068586.1| elongation of very long chain fatty acids prote... 75 3e-13
Alignment gi|NP_060240.3| elongation of very long chain fatty acids prote... 74 5e-13
Alignment gi|NP_001229757.1| elongation of very long chain fatty acids pr... 68 4e-11
>ref|NP_001124193.1| elongation of very long chain fatty acids protein 6 [Homo sapiens].
Length = 265
Score = 529 bits (1363), Expect = e-150
Identities = 253/265 (95%), Positives = 260/265 (98%)
Frame = +3
Query: 381 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 560
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 561 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 740
KPLVLWSL+LAVFSIFGALRTGAYM+YILMTKGLK SVCDQGFYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSK 120
Query: 741 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 920
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 921 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYL 1100
YALRAAGFRVSRKFAMFITLSQITQML+GCVVNYLVF WMQ DQC+SHF NIFWSSLMYL
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYL 240
Query: 1101 SYLVLFCHFFFEAYIGKMRKTTKAD 1175
SYLVLFCHFFFEAYIGKMRKTTKA+
Sbjct: 241 SYLVLFCHFFFEAYIGKMRKTTKAE 265
>ref|NP_076995.1| elongation of very long chain fatty acids protein 6 [Homo sapiens].
Length = 265
Score = 529 bits (1363), Expect = e-150
Identities = 253/265 (95%), Positives = 260/265 (98%)
Frame = +3
Query: 381 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 560
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 561 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 740
KPLVLWSL+LAVFSIFGALRTGAYM+YILMTKGLK SVCDQGFYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSK 120
Query: 741 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 920
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 921 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYL 1100
YALRAAGFRVSRKFAMFITLSQITQML+GCVVNYLVF WMQ DQC+SHF NIFWSSLMYL
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYL 240
Query: 1101 SYLVLFCHFFFEAYIGKMRKTTKAD 1175
SYLVLFCHFFFEAYIGKMRKTTKA+
Sbjct: 241 SYLVLFCHFFFEAYIGKMRKTTKAE 265
>ref|NP_689523.1| elongation of very long chain fatty acids protein 3 [Homo sapiens].
Length = 270
Score = 244 bits (623), Expect = 3e-64
Identities = 116/257 (45%), Positives = 166/257 (64%), Gaps = 1/257 (0%)
Frame = +3
Query: 405 QEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSL 584
Q Y FE + + +E W SF ++ +Y I G++ M +R F L+ PL+LWS
Sbjct: 16 QPYNFELS---KDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSF 72
Query: 585 SLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 764
LA+FSI GA+R M +L+T GLK +VC F + KFW++ F+LSK ELGDT
Sbjct: 73 CLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVFLLSKVIELGDTA 132
Query: 765 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGF 944
FIILRK+ LIF+HWYHH TVL+Y+ + YK+ V GGWF+TMN+GVH++MY+YY L+AA
Sbjct: 133 FIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAIMYTYYTLKAANV 192
Query: 945 RVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCH 1124
+ + M IT QI QM VG +V+ L + W Q C++ ++FWS ++Y++Y +LF H
Sbjct: 193 KPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAH 252
Query: 1125 FFFEAYI-GKMRKTTKA 1172
FF + YI K++ TK+
Sbjct: 253 FFCQTYIRPKVKAKTKS 269
>ref|NP_001098028.1| elongation of very long chain fatty acids protein 7 [Homo sapiens].
Length = 281
Score = 89.4 bits (220), Expect = 1e-17
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 20/249 (8%)
Frame = +3
Query: 483 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 653
++ Y F+ G +M R FEL+K ++ ++ + +FS+ YM Y ++
Sbjct: 39 ILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSG 90
Query: 654 KGLKYSV-CDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 806
G+ YS CD Y+ + W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGIGYSFRCDIVDYSRSPTALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 807 YHHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAG--FRVSRKFAMFI 974
+HH T++ ++W+ AGG G F + N VH VMYSYY L A G ++ + ++
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYL 207
Query: 975 TLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLS--YLVLFCHFFFEAYIG 1148
T Q+ Q ++ ++ F +M + C FP +F +M S +L+LF HF++ AY
Sbjct: 208 TSLQLVQFVI-VAIHISQFFFM--EDCKYQFP-VFACIIMSYSFMFLLLFLHFWYRAYTK 263
Query: 1149 KMR--KTTK 1169
R KT K
Sbjct: 264 GQRLPKTVK 272
>ref|NP_079206.2| elongation of very long chain fatty acids protein 7 [Homo sapiens].
Length = 281
Score = 89.4 bits (220), Expect = 1e-17
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 20/249 (8%)
Frame = +3
Query: 483 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 653
++ Y F+ G +M R FEL+K ++ ++ + +FS+ YM Y ++
Sbjct: 39 ILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSG 90
Query: 654 KGLKYSV-CDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 806
G+ YS CD Y+ + W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGIGYSFRCDIVDYSRSPTALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 807 YHHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAG--FRVSRKFAMFI 974
+HH T++ ++W+ AGG G F + N VH VMYSYY L A G ++ + ++
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYL 207
Query: 975 TLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLS--YLVLFCHFFFEAYIG 1148
T Q+ Q ++ ++ F +M + C FP +F +M S +L+LF HF++ AY
Sbjct: 208 TSLQLVQFVI-VAIHISQFFFM--EDCKYQFP-VFACIIMSYSFMFLLLFLHFWYRAYTK 263
Query: 1149 KMR--KTTK 1169
R KT K
Sbjct: 264 GQRLPKTVK 272
>ref|NP_073563.1| elongation of very long chain fatty acids protein 4 [Homo sapiens].
Length = 314
Score = 85.9 bits (211), Expect = 2e-16
Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 15/263 (5%)
Frame = +3
Query: 399 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 572
T++ Y + + W MQ W + +S LY F++ G M R F++R L+
Sbjct: 22 TVEFYRWTWSIADKRVENWPLMQSPWP-TLSISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
Query: 573 LWSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYA----FVL 734
+++ + + + IF L G+Y G Y +C Y+ V + A + +
Sbjct: 81 IYNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSNNVHEVRIAAALWWYFV 133
Query: 735 SKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHS 905
SK E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H
Sbjct: 134 SKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHV 193
Query: 906 VMYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-I 1076
+MYSYY L A G + + + ++T+ Q+ Q V + H FP +
Sbjct: 194 IMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHV------TIGHTALSLYTDCPFPKWM 247
Query: 1077 FWSSLMY-LSYLVLFCHFFFEAY 1142
W+ + Y +S++ LF +F+ Y
Sbjct: 248 HWALIAYAISFIFLFLNFYIRTY 270
>ref|NP_073732.1| elongation of very long chain fatty acids protein 1 [Homo sapiens].
Length = 279
Score = 75.9 bits (185), Expect = 2e-13
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 8/230 (3%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFS---IFGALRTGAYMLYIL 647
S L++ +Y G R +M R F+LR +++++ SL S ++ L +G Y
Sbjct: 33 SILLTYVYFVLSLGPR-IMANRKPFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTW 91
Query: 648 MTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHIT 821
+ YS + V A+ F+ SK EL DT+ ILRK+ ++ FLH +HH +
Sbjct: 92 RCDPVDYSNSPEALRMVRV----AWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH-S 146
Query: 822 VLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQ 995
VL +SW+ + GG G F M N VH +MY YY L A G V++ + + Q
Sbjct: 147 VLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYLYYGLSAFG-PVAQPYLWWKKHMTAIQ 205
Query: 996 MLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
++ +V+ + + C +P I MY + +LF +F++ +Y
Sbjct: 206 LIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYGTIFFMLFSNFWYHSY 255
>ref|NP_068586.1| elongation of very long chain fatty acids protein 5 isoform 1 [Homo
sapiens].
Length = 299
Score = 75.1 bits (183), Expect = 3e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 12/242 (4%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSI--FGALRTG 626
++ +N+ +F+ S +Y ++ G M + F R LV+++L L + S+ F L TG
Sbjct: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCELVTG 86
Query: 627 AYMLYILMTKGLKYSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ- 785
+ +G KY+ QG S W Y F SK E DT F ILRK
Sbjct: 87 VW-------EG-KYNFFCQGTRTAGESDMKIIRVLWWYYF--SKLIEFMDTFFFILRKNN 136
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAA-GFRVSR 956
++ LH YHH ++L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 137 HQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYL 196
Query: 957 KFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFE 1136
+ +IT Q+ Q ++ + W C +++ +S + LF +F+ +
Sbjct: 197 WWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLIALFTNFYIQ 252
Query: 1137 AY 1142
Y
Sbjct: 253 TY 254
>ref|NP_060240.3| elongation of very long chain fatty acids protein 2 [Homo sapiens].
Length = 296
Score = 74.3 bits (181), Expect = 5e-13
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 16/252 (6%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
+M +++ +F ++ +Y I+ G M R LR L L++L + + S AY
Sbjct: 30 FMLDSYLPTFFLTVMYLLSIWLGNKYMKNRPALSLRGILTLYNLGITLLS--------AY 81
Query: 633 ML--YILMTKGLKYSVCDQGFYNGP-----VSK-FWAYAFVLSKAPELGDTIFIILRKQ- 785
ML IL T Y++ Q + V+K W Y F SK+ E DTIF +LRK+
Sbjct: 82 MLAELILSTWEGGYNLQCQDLTSAGEADIRVAKVLWWYYF--SKSVEFLDTIFFVLRKKT 139
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 959
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 140 SQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 197
Query: 960 F---AMFITLSQITQMLVGCVVNYLVFHWMQQ--DQCYSHFPNIFWSSLMYLSYLVLFCH 1124
+ ++T +Q+ Q ++ + H M C F + + S L+ ++LF +
Sbjct: 198 YLWWKKYLTQAQLVQFVL------TITHTMSAVVKPCGFPFGCLIFQSSYMLTLVILFLN 251
Query: 1125 FFFEAYIGKMRK 1160
F+ + Y K K
Sbjct: 252 FYVQTYRKKPMK 263
>ref|NP_001229757.1| elongation of very long chain fatty acids protein 5 isoform 2 [Homo
sapiens].
Length = 326
Score = 67.8 bits (164), Expect = 4e-11
Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 31/261 (11%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFG------- 611
++ +N+ +F+ S +Y ++ G M + F R LV+++L L + S++
Sbjct: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCESKRE 86
Query: 612 -------ALRTGAYMLYILMTKGL-------KYSVCDQGFYNGPVSKF------WAYAFV 731
A RT L L KY+ QG S W Y F
Sbjct: 87 QPRRSACASRTDPSTQQQLPENRLVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYF- 145
Query: 732 LSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVH 902
SK E DT F ILRK ++ LH YHH ++L W+ + G +F T+N +H
Sbjct: 146 -SKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIH 204
Query: 903 SVMYSYYALRAA-GFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIF 1079
+MYSYY L + R + +IT Q+ Q ++ + W C ++
Sbjct: 205 VLMYSYYGLSSVPSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLY 260
Query: 1080 WSSLMYLSYLVLFCHFFFEAY 1142
+ +S + LF +F+ + Y
Sbjct: 261 FQIGYMISLIALFTNFYIQTY 281
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 83,472,319
Number of extensions: 2092290
Number of successful extensions: 7005
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6984
Number of HSP's successfully gapped: 11
Length of query: 777
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 667
Effective length of database: 14,671,124
Effective search space: 9785639708
Effective search space used: 9785639708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007451
(2331 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_569717.1| elongation of very long chain fatty acids prote... 521 e-148
Alignment gi|NP_031729.1| elongation of very long chain fatty acids prote... 236 4e-62
Alignment gi|NP_001139446.1| elongation of very long chain fatty acids pr... 88 3e-17
Alignment gi|NP_683743.2| elongation of very long chain fatty acids prote... 88 3e-17
Alignment gi|NP_083277.3| elongation of very long chain fatty acids prote... 87 8e-17
Alignment gi|NP_599016.2| elongation of very long chain fatty acids prote... 82 2e-15
Alignment gi|NP_001034265.1| elongation of very long chain fatty acids pr... 80 7e-15
Alignment gi|NP_062295.1| elongation of very long chain fatty acids prote... 80 7e-15
Alignment gi|NP_062296.1| elongation of very long chain fatty acids prote... 69 1e-11
Alignment gi|NP_001034264.1| elongation of very long chain fatty acids pr... 68 4e-11
>ref|NP_569717.1| elongation of very long chain fatty acids protein 6 [Mus musculus].
Length = 267
Score = 521 bits (1343), Expect = e-148
Identities = 250/267 (93%), Positives = 259/267 (97%), Gaps = 2/267 (0%)
Frame = +3
Query: 381 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 560
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 561 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 740
KPLVLWSL+LAVFSIFGALRTGAYMLYILMTKGLK SVCDQ FYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMLYILMTKGLKQSVCDQSFYNGPVSKFWAYAFVLSK 120
Query: 741 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 920
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 921 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQ--QDQCYSHFPNIFWSSLM 1094
YALRAAGFRVSRKFAMFITLSQITQML+GCV+NYLVF+WMQ DQCYSHF NIFWSSLM
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVINYLVFNWMQHDNDQCYSHFQNIFWSSLM 240
Query: 1095 YLSYLVLFCHFFFEAYIGKMRKTTKAD 1175
YLSYLVLFCHFFFEAYIGK++K TKA+
Sbjct: 241 YLSYLVLFCHFFFEAYIGKVKKATKAE 267
>ref|NP_031729.1| elongation of very long chain fatty acids protein 3 [Mus musculus].
Length = 271
Score = 236 bits (603), Expect = 4e-62
Identities = 112/248 (45%), Positives = 159/248 (64%)
Frame = +3
Query: 402 LQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWS 581
+Q Y+FE + +++E W SFL+ +Y I G+ M R F L++PL+LWS
Sbjct: 16 MQPYDFE---TFQDLRPFLEEYWVSSFLIVVVYLLLIVVGQTYMRTRKSFSLQRPLILWS 72
Query: 582 LSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDT 761
LA+FSI G LR +M ++ T GLK +VC + + V +FW++ F+LSK ELGDT
Sbjct: 73 FFLAIFSILGTLRMWKFMATVMFTVGLKQTVCFAIYTDDAVVRFWSFLFLLSKVVELGDT 132
Query: 762 IFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAG 941
FIILRK+ LIF+HWYHH TVLL++ + YK+ V GGWFMTMN+GVHSVMY+YY ++AA
Sbjct: 133 AFIILRKRPLIFVHWYHHSTVLLFTSFGYKNKVPSGGWFMTMNFGVHSVMYTYYTMKAAK 192
Query: 942 FRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFC 1121
+ M IT QI QM++G + L + W Q+ C++ + FWS ++Y +Y +LF
Sbjct: 193 LKHPNLLPMVITSLQILQMVLGTIFGILNYIWRQEKGCHTTTEHFFWSFMLYGTYFILFA 252
Query: 1122 HFFFEAYI 1145
HFF AY+
Sbjct: 253 HFFHRAYL 260
>ref|NP_001139446.1| elongation of very long chain fatty acids protein 4 [Mus musculus].
Length = 312
Score = 88.2 bits (217), Expect = 3e-17
Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 17/265 (6%)
Frame = +3
Query: 399 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 572
T++ Y + + W MQ W + +S LY F++ G M R F++R L+
Sbjct: 22 TVEFYRWTWTIADKRVADWPLMQSPWP-TISISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
Query: 573 LWSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSK------FWAYAF 728
+++ + + + IF L G+Y G Y +C Y+ V++ W Y
Sbjct: 81 IYNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSNDVNEVRIAGALWWY-- 131
Query: 729 VLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGV 899
+SK E DT+F ILRK+ ++ FLH YHH T+ W K + G +F MN +
Sbjct: 132 FVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFI 191
Query: 900 HSVMYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN 1073
H +MYSYY L A G + + + ++T+ Q+ Q V + H FP
Sbjct: 192 HVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPK 245
Query: 1074 -IFWSSLMY-LSYLVLFCHFFFEAY 1142
+ W+ + Y +S++ LF +F+ Y
Sbjct: 246 WMHWALIAYAISFIFLFLNFYTRTY 270
>ref|NP_683743.2| elongation of very long chain fatty acids protein 4 [Mus musculus].
Length = 312
Score = 88.2 bits (217), Expect = 3e-17
Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 17/265 (6%)
Frame = +3
Query: 399 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 572
T++ Y + + W MQ W + +S LY F++ G M R F++R L+
Sbjct: 22 TVEFYRWTWTIADKRVADWPLMQSPWP-TISISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
Query: 573 LWSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSK------FWAYAF 728
+++ + + + IF L G+Y G Y +C Y+ V++ W Y
Sbjct: 81 IYNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSNDVNEVRIAGALWWY-- 131
Query: 729 VLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGV 899
+SK E DT+F ILRK+ ++ FLH YHH T+ W K + G +F MN +
Sbjct: 132 FVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFI 191
Query: 900 HSVMYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN 1073
H +MYSYY L A G + + + ++T+ Q+ Q V + H FP
Sbjct: 192 HVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPK 245
Query: 1074 -IFWSSLMY-LSYLVLFCHFFFEAY 1142
+ W+ + Y +S++ LF +F+ Y
Sbjct: 246 WMHWALIAYAISFIFLFLNFYTRTY 270
>ref|NP_083277.3| elongation of very long chain fatty acids protein 7 [Mus musculus].
Length = 281
Score = 86.7 bits (213), Expect = 8e-17
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 18/238 (7%)
Frame = +3
Query: 483 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 653
++ LY F+ G +M R FEL+K ++ ++ + +FS+ YM Y ++
Sbjct: 39 IILGLYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSG 90
Query: 654 KGLKYSV-CDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 806
G YS CD Y+ V W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGTGYSFRCDIVDYSQSPRAMRMVHTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 807 YHHITVLLYSWYSYKDMVAGG-GWFMT-MNYGVHSVMYSYYALRAAG--FRVSRKFAMFI 974
+HH T++ ++W+ AGG G F +N VH VMYSYY L A G ++ + +
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGLCAMGPAYQKYLWWKKHL 207
Query: 975 TLSQITQ-MLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
T Q+ Q +LV + + F + C +P + + Y +L+LF HF++ AY
Sbjct: 208 TSLQLVQFVLVTIHIGQIFF----MEDCNYQYPVFLYIIMSYGCIFLLLFLHFWYRAY 261
>ref|NP_599016.2| elongation of very long chain fatty acids protein 5 [Mus musculus].
Length = 299
Score = 81.6 bits (200), Expect = 2e-15
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 13/243 (5%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
++ +N+ +F+ S +Y ++ G M R F R L L++L L + S+ Y
Sbjct: 27 FLLDNYIPTFVCSVIYLLIVWLGPKYMKNRQPFSCRGILQLYNLGLTLLSL--------Y 78
Query: 633 MLYILMTKGL---KYSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ 785
M Y L+T G+ KY+ QG + S W Y F SK E DT F ILRK
Sbjct: 79 MFYELVT-GVWEGKYNFFCQGTRSAGESDMKIIRVLWWYYF--SKLIEFMDTFFFILRKN 135
Query: 786 --KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRA-AGFRVS 953
++ LH YHH T+L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 136 NHQITVLHVYHHATMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSIPSMRPY 195
Query: 954 RKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFF 1133
+ +IT Q+ Q ++ + W C +F+ +S + LF +F+
Sbjct: 196 LWWKKYITQGQLVQFVLTIIQTTCGVFW----PCSFPLGWLFFQIGYMISLIALFTNFYI 251
Query: 1134 EAY 1142
+ Y
Sbjct: 252 QTY 254
>ref|NP_001034265.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
musculus].
Length = 279
Score = 80.1 bits (196), Expect = 7e-15
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 656
S L++ +Y G R +M R F+LR +++++ SL + S+ Y++Y +
Sbjct: 33 SILLTYVYFILSLGPR-IMANRKPFQLRGFMIVYNFSLVILSL--------YIVYEFLMS 83
Query: 657 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 809
G + CD F N P + A+ F+LSK EL DT+ ILRK+ ++ FLH +
Sbjct: 84 GWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTFLHVF 143
Query: 810 HHITVLLYSWYSYKDMVAGGGWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQ 986
HH + W+ K G G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMT 202
Query: 987 ITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
Q++ +V+ + + C +P I MY + +LF +F++ +Y
Sbjct: 203 AIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSY 255
>ref|NP_062295.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
musculus].
Length = 279
Score = 80.1 bits (196), Expect = 7e-15
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 656
S L++ +Y G R +M R F+LR +++++ SL + S+ Y++Y +
Sbjct: 33 SILLTYVYFILSLGPR-IMANRKPFQLRGFMIVYNFSLVILSL--------YIVYEFLMS 83
Query: 657 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 809
G + CD F N P + A+ F+LSK EL DT+ ILRK+ ++ FLH +
Sbjct: 84 GWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTFLHVF 143
Query: 810 HHITVLLYSWYSYKDMVAGGGWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQ 986
HH + W+ K G G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMT 202
Query: 987 ITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
Q++ +V+ + + C +P I MY + +LF +F++ +Y
Sbjct: 203 AIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSY 255
>ref|NP_062296.1| elongation of very long chain fatty acids protein 2 [Mus musculus].
Length = 292
Score = 69.3 bits (168), Expect = 1e-11
Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 16/246 (6%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
++ +++ +F+++ Y I+ G M R LR L L++L++ + S AY
Sbjct: 30 FLLDSYLPTFILTITYLLSIWLGNKYMKNRPALSLRGILTLYNLAITLLS--------AY 81
Query: 633 MLYILMTKGLK-------YSVCDQGFYNGPVSK-FWAYAFVLSKAPELGDTIFIILRKQ- 785
ML L+ + ++ G + V+K W Y F SK E DTIF +LRK+
Sbjct: 82 MLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYYF--SKLVEFLDTIFFVLRKKT 139
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 959
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 140 NQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 197
Query: 960 F---AMFITLSQITQMLVGCVVNYLVFHWMQQ--DQCYSHFPNIFWSSLMYLSYLVLFCH 1124
+ ++T +Q+ Q ++ + H + C F + + S ++ ++LF +
Sbjct: 198 YLWWKKYLTQAQLVQFVL------TITHTLSAVVKPCGFPFGCLIFQSSYMMTLVILFLN 251
Query: 1125 FFFEAY 1142
F+ + Y
Sbjct: 252 FYIQTY 257
>ref|NP_001034264.1| elongation of very long chain fatty acids protein 1 isoform 2 [Mus
musculus].
Length = 202
Score = 67.8 bits (164), Expect = 4e-11
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Frame = +3
Query: 717 AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTM- 887
A+ F+LSK EL DT+ ILRK+ ++ FLH +HH + W+ K G G F M
Sbjct: 34 AWLFMLSKVIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMI 93
Query: 888 NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHF 1067
N VH VMY YY L A G V++ + + Q++ +V+ + + C +
Sbjct: 94 NSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQY 152
Query: 1068 PNIFWSSLMY-LSYLVLFCHFFFEAY 1142
P I MY + +LF +F++ +Y
Sbjct: 153 PIIIHLIWMYGTIFFILFSNFWYHSY 178
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 71,173,717
Number of extensions: 1781514
Number of successful extensions: 6099
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 6063
Number of HSP's successfully gapped: 10
Length of query: 777
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 668
Effective length of database: 12,343,635
Effective search space: 8245548180
Effective search space used: 8245548180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007451
(2331 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161106.1| elongation of very long chain fatty acids pr... 249 4e-66
Alignment gi|XP_003357096.1| PREDICTED: elongation of very long chain fat... 150 3e-36
Alignment gi|XP_003361684.1| PREDICTED: elongation of very long chain fat... 84 4e-16
Alignment gi|XP_003121444.1| PREDICTED: elongation of very long chain fat... 83 8e-16
Alignment gi|XP_003361081.1| PREDICTED: elongation of very long chain fat... 80 6e-15
Alignment gi|NP_001161119.1| elongation of very long chain fatty acids pr... 76 9e-14
Alignment gi|XP_001924876.2| PREDICTED: elongation of very long chain fat... 72 1e-12
Alignment gi|XP_003356572.1| PREDICTED: elongation of very long chain fat... 61 3e-09
Alignment gi|XP_003134038.1| PREDICTED: elongation of very long chain fat... 52 2e-06
>ref|NP_001161106.1| elongation of very long chain fatty acids protein 3 [Sus scrofa].
Length = 270
Score = 249 bits (637), Expect = 4e-66
Identities = 120/241 (49%), Positives = 160/241 (66%), Gaps = 1/241 (0%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
+++E W SF + +Y IF G+ M R F L+ PL+LWS L VFSI GA+RT +
Sbjct: 29 FLEEYWATSFPIVLVYLLLIFVGQKYMKSRKGFNLQGPLILWSFCLTVFSILGAVRTWGF 88
Query: 633 MLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQKLIFLHWYH 812
M+ +L+ LK +VC + P+ KFW+ FVLSK ELGDT FIILRK+ LIF+HWYH
Sbjct: 89 MVAVLLRGSLKQTVCFTNSTDNPIIKFWSCLFVLSKIIELGDTAFIILRKRPLIFVHWYH 148
Query: 813 HITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQIT 992
H TVLLYS + YKD VA GGWFMTMNYGVH++MY+YY LRAA + + F MFIT QI
Sbjct: 149 HSTVLLYSSFGYKDKVAAGGWFMTMNYGVHAIMYTYYTLRAAKVKPPKWFPMFITSLQIL 208
Query: 993 QMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFEAY-IGKMRKTTK 1169
QM +G V+ L + W Q+ C++ +FWS ++Y++Y +LF FF + Y I K + TK
Sbjct: 209 QMFLGATVSILTYIWKQEQGCHTTTEQLFWSFMLYMTYFLLFAQFFHQNYIIPKAKAKTK 268
Query: 1170 A 1172
+
Sbjct: 269 S 269
>ref|XP_003357096.1| PREDICTED: elongation of very long chain fatty acids protein 6,
partial [Sus scrofa].
Length = 73
Score = 150 bits (379), Expect = 3e-36
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = +3
Query: 381 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 560
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 60
Query: 561 KPLVLWSLSLAVF 599
KPLVLWSLSLAVF
Sbjct: 61 KPLVLWSLSLAVF 73
>ref|XP_003361684.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
[Sus scrofa].
Length = 359
Score = 83.6 bits (205), Expect = 4e-16
Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 12/260 (4%)
Frame = +3
Query: 399 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 572
T++ Y + + W M W + +S LY F++ G M R F++R L+
Sbjct: 67 TVEFYRWTWSIADKRVENWPLMHSPWT-TLCISTLYLLFVWLGPKWMKDREPFQMRSVLI 125
Query: 573 LWSLSLAVFS--IFGALRTGAYML-YILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKA 743
+++ + + + IF L G+Y Y + + + YS D + W Y +SK
Sbjct: 126 IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYS--DNVHEVRIAAALWWY--FVSKG 181
Query: 744 PELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMY 914
E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H +MY
Sbjct: 182 IEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMY 241
Query: 915 SYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IFWS 1085
SYY L A G + + + ++T+ Q+ Q V + H FP + W+
Sbjct: 242 SYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMHWA 295
Query: 1086 SLMY-LSYLVLFCHFFFEAY 1142
+ Y +S++ LF +F+ Y
Sbjct: 296 LIAYAISFIFLFLNFYVRTY 315
>ref|XP_003121444.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
[Sus scrofa].
Length = 402
Score = 82.8 bits (203), Expect = 8e-16
Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 16/243 (6%)
Frame = +3
Query: 462 ENWK------KSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFS--IFGAL 617
ENW + +S LY F++ G M R F++R L++++ + + + IF L
Sbjct: 126 ENWPLMHSPWTTLCISTLYLLFVWLGPKWMKDREPFQMRSVLIIYNFGMVLLNLFIFREL 185
Query: 618 RTGAYML-YILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--K 788
G+Y Y + + + YS D + W Y +SK E DT+F ILRK+ +
Sbjct: 186 FMGSYNAGYSYICQSVDYS--DNVHEVRIAAALWWY--FVSKGIEYLDTVFFILRKKNNQ 241
Query: 789 LIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK-- 959
+ FLH YHH T+ W K + G +F +N +H +MYSYY L A G + +
Sbjct: 242 VSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLW 301
Query: 960 FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IFWSSLMY-LSYLVLFCHFFF 1133
+ ++T+ Q+ Q V + H FP + W+ + Y +S++ LF +F+
Sbjct: 302 WKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYV 355
Query: 1134 EAY 1142
Y
Sbjct: 356 RTY 358
>ref|XP_003361081.1| PREDICTED: elongation of very long chain fatty acids protein 5 [Sus
scrofa].
Length = 299
Score = 79.7 bits (195), Expect = 6e-15
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 13/243 (5%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
++ +N+ + + S LY ++ G M R F R LV+++L L + S+ Y
Sbjct: 27 FLLDNYIPTLVCSILYLLIVWLGPKYMKNRQPFSCRGILVVYNLGLTLLSL--------Y 78
Query: 633 MLYILMTKGL---KYSVCDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ 785
M Y L+T G+ KY+ QG +G + W Y F SK E DT F ILRK
Sbjct: 79 MFYELVT-GVWEGKYNFFCQGTRSGGEADMKIIRVLWWYYF--SKLIEFMDTFFFILRKN 135
Query: 786 --KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRA-AGFRVS 953
++ LH YHH T+L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 136 NHQITVLHVYHHATMLNIWWFVMNWVPCGHCYFGATLNSFIHVLMYSYYGLSSIPSMRPY 195
Query: 954 RKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFF 1133
+ +IT Q+ Q ++ + W C +++ +S + LF +F+
Sbjct: 196 LWWKKYITQGQLLQFVLTIIQTSFGVIW----PCAFPLGWLYFQIGYMISLIALFTNFYI 251
Query: 1134 EAY 1142
+ Y
Sbjct: 252 QTY 254
>ref|NP_001161119.1| elongation of very long chain fatty acids protein 1 [Sus scrofa].
Length = 314
Score = 75.9 bits (185), Expect = 9e-14
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 12/234 (5%)
Frame = +3
Query: 477 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 656
S L+S +Y G R +M R F+LR +V+++ SL S+ Y++Y +
Sbjct: 68 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 118
Query: 657 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 809
G + CD F N P + A+ F+ SK EL DT+ ILRK+ ++ FLH +
Sbjct: 119 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 178
Query: 810 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLS 983
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 179 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 236
Query: 984 QITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 1142
Q++ +V+ V + C +P I +Y + LF +F+++AY
Sbjct: 237 TAIQLVQFVLVSLHVSQYYFVPACDYQYPVIIHLIWVYGTVFFALFSNFWYQAY 290
>ref|XP_001924876.2| PREDICTED: elongation of very long chain fatty acids protein 2-like
[Sus scrofa].
Length = 511
Score = 72.4 bits (176), Expect = 1e-12
Identities = 70/257 (27%), Positives = 118/257 (45%), Gaps = 17/257 (6%)
Frame = +3
Query: 453 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 632
+M +++ +F+++ LY I+ G M R LR L ++L + + S AY
Sbjct: 245 FMLDSYLPTFVLTVLYLLSIWLGNRFMKSRPALSLRGLLTFYNLGITLLS--------AY 296
Query: 633 MLYILMTKGLK--YSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ- 785
ML L+ + Y++ Q + + W Y F SK E DTIF +LRK+
Sbjct: 297 MLAELILSSWEGGYNLQCQDLTSAGEADIRVARVLWWYYF--SKLIEFLDTIFFVLRKKT 354
Query: 786 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 959
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 355 SQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 412
Query: 960 F---AMFITLSQITQMLVGCVVNYLVFHWMQQ--DQCYSHFPNIFWSSLMYLSYLVLFCH 1124
+ ++T +Q+ Q ++ + H + C F + + S L+ ++LF +
Sbjct: 413 YLWWKRYLTQAQLVQFVL------TITHTLSAVVRPCGFPFGCLIFQSSYMLTLVILFLN 466
Query: 1125 FFFEAYIGK-MRKTTKA 1172
F+ + Y K M+K T A
Sbjct: 467 FYVQTYRKKPMKKDTDA 483
>ref|XP_003356572.1| PREDICTED: elongation of very long chain fatty acids protein 2-like
[Sus scrofa].
Length = 242
Score = 60.8 bits (146), Expect = 3e-09
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +3
Query: 714 WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MT 884
W Y F SK E DTIF +LRK+ ++ FLH YHH ++ W + G +F T
Sbjct: 63 WWYYF--SKLIEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPT 120
Query: 885 MNYGVHSVMYSYYALRAAGFRVSRKF---AMFITLSQITQMLVGCVVNYLVFHWMQQ--D 1049
+N +H +MYSYY L F K+ ++T +Q+ Q ++ + H +
Sbjct: 121 LNSFIHILMYSYYGLSV--FPSMHKYLWWKRYLTQAQLVQFVL------TITHTLSAVVR 172
Query: 1050 QCYSHFPNIFWSSLMYLSYLVLFCHFFFEAYIGK-MRKTTKA 1172
C F + + S L+ ++LF +F+ + Y K M+K T A
Sbjct: 173 PCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKKPMKKDTDA 214
>ref|XP_003134038.1| PREDICTED: elongation of very long chain fatty acids protein 7-like
[Sus scrofa].
Length = 240
Score = 51.6 bits (122), Expect = 2e-06
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Frame = +3
Query: 483 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTKG 659
++ LY F+ G M R FEL+K ++ ++ + +FS++ +++ G
Sbjct: 39 IILGLYVYFVTSLGPKFMENRKPFELKKAMITYNFFIVLFSMYICYE------FVMSGWG 92
Query: 660 LKYSV-CDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYH 812
YS C+ Y+ V W Y F SK EL DTIF +LRK+ ++ FLH +H
Sbjct: 93 TGYSFRCEIVDYSQSPTALRMVRTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHVFH 150
Query: 813 HITVLLYSWYSYKDMVAG 866
H T++ ++W+ AG
Sbjct: 151 H-TIMPWTWWFGVKFAAG 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,814,512
Number of extensions: 1382345
Number of successful extensions: 4752
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4733
Number of HSP's successfully gapped: 9
Length of query: 777
Length of database: 11,343,932
Length adjustment: 107
Effective length of query: 670
Effective length of database: 8,679,953
Effective search space: 5815568510
Effective search space used: 5815568510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007451
(2331 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 837 0.0
Sscrofa_Chr14 62 1e-06
>Sscrofa_Chr08
|| Length = 148491826
Score = 837 bits (422), Expect = 0.0
Identities = 454/470 (96%)
Strand = Plus / Minus
Query: 1 ctttcgctctccctcgcaaagggttaatttgtctgatcgcatgagggggaggagatttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219902 ctttcgctctccctcgcaaagggttaatttgtctgatcgcatgagggggaggagatttcc 120219843
Query: 61 ctgtagacaagtaaaaagggtgatggacaaacgtgcgggcactaagaccgcaaggcattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219842 ctgtagacaagtaaaaagggtgatggacaaacgtgcgggcactaagaccgcaaggcattc 120219783
Query: 121 atttcctcctacggtggatgcggacgccgggaggaggagagtcccagagcgaggagctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219782 atttcctcctacggtggatgcggacgccgggaggaggagagtcccagagcgaggagctga 120219723
Query: 181 gagcccaggcacaggcaatgctcagccccgactgtagctgagagagactgggagagaccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219722 gagcccaggcacaggcaatgctcagccccgactgtagctgagagagactgggagagaccg 120219663
Query: 241 attgctggagacccagcggcgcggggaagacctannnnnnnnnnnnnnnnaagcagacag 300
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 120219662 attgctggagacccagcggcgcggggaagacctaggggggtgggtgggggaagcagacag 120219603
Query: 301 gagtgcactcaaaatcaagcgctttacagattattttattttgtgtagagaacacgtagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219602 gagtgcactcaaaatcaagcgctttacagattattttattttgtgtagagaacacgtagc 120219543
Query: 361 gactccgaagatcagccccaatgaacatgtcagtgttgactttacaagaatatgaattcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219542 gactccgaagatcagccccaatgaacatgtcagtgttgactttacaagaatatgaattcg 120219483
Query: 421 aaaagcagttcaacgagaacgaagccatccaatggatgcaggaaaactgg 470
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219482 aaaagcagttcaacgagaacgaagccatccaatggatgcaggaaaactgg 120219433
Score = 264 bits (133), Expect = 2e-67
Identities = 133/133 (100%)
Strand = Plus / Minus
Query: 469 ggaagaaatctttcctggtttctgctctgtatgctgcctttatctttggcggtcggcatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120119753 ggaagaaatctttcctggtttctgctctgtatgctgcctttatctttggcggtcggcatg 120119694
Query: 529 tcatgaacaagcgcgcgaagtttgaactgaggaagccattagtgctgtggtctctgagcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120119693 tcatgaacaagcgcgcgaagtttgaactgaggaagccattagtgctgtggtctctgagcc 120119634
Query: 589 ttgcagtgttcag 601
|||||||||||||
Sbjct: 120119633 ttgcagtgttcag 120119621
>Sscrofa_Chr14
|| Length = 153851969
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 846 tacaaggacatggtggccgggggaggctggttcatgaccatgaacta 892
|||||||||| |||||| | ||| |||||||||||||||||||||||
Sbjct: 123083108 tacaaggacaaggtggctgcgggcggctggttcatgaccatgaacta 123083154
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 72,581,609
Number of extensions: 553
Number of successful extensions: 553
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 4
Length of query: 2331
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2309
Effective length of database: 2,808,408,574
Effective search space: 6484615397366
Effective search space used: 6484615397366
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)