Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007452
(1961 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095625.1| elongation of very long chain fatty acids pr... 516 e-146
Alignment gi|NP_001179235.1| elongation of very long chain fatty acids pr... 244 3e-64
Alignment gi|XP_002698497.1| PREDICTED: elongation of very long chain fat... 244 3e-64
Alignment gi|NP_001071510.1| elongation of very long chain fatty acids pr... 91 5e-18
Alignment gi|NP_001092520.1| elongation of very long chain fatty acids pr... 85 2e-16
Alignment gi|NP_001029875.1| elongation of very long chain fatty acids pr... 78 2e-14
Alignment gi|NP_001040062.1| elongation of very long chain fatty acids pr... 74 4e-13
Alignment gi|NP_001076986.1| elongation of very long chain fatty acids pr... 73 8e-13
>ref|NP_001095625.1| elongation of very long chain fatty acids protein 6 [Bos taurus].
Length = 264
Score = 516 bits (1329), Expect = e-146
Identities = 246/264 (93%), Positives = 254/264 (96%), Gaps = 1/264 (0%)
Frame = +3
Query: 135 MSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKP 314
MSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAF+FGGRH+MNKRAKFELRKP
Sbjct: 1 MSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFVFGGRHLMNKRAKFELRKP 60
Query: 315 LVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAP 494
LVLWSL+LAVFSIFGALRTGAYM+Y +MTKGLK+SVCDQGFYNGPVSKFWAYAFVLSKAP
Sbjct: 61 LVLWSLTLAVFSIFGALRTGAYMVYTVMTKGLKHSVCDQGFYNGPVSKFWAYAFVLSKAP 120
Query: 495 ELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYA 674
ELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNY VHSVMYSYYA
Sbjct: 121 ELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYSVHSVMYSYYA 180
Query: 675 LRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSY 854
LRAAGFRVSRKFAMFITLSQI QML+GCV+NYLVF WMQ DQCYSHF NIFWSSLMYLSY
Sbjct: 181 LRAAGFRVSRKFAMFITLSQIIQMLIGCVINYLVFQWMQHDQCYSHFQNIFWSSLMYLSY 240
Query: 855 LVLFCHFFFEAYIG-KMRKTTKAD 923
VLFCHFFFEAYIG KMRK TKAD
Sbjct: 241 FVLFCHFFFEAYIGSKMRKATKAD 264
>ref|NP_001179235.1| elongation of very long chain fatty acids protein 3 [Bos taurus].
Length = 270
Score = 244 bits (622), Expect = 3e-64
Identities = 118/247 (47%), Positives = 158/247 (63%)
Frame = +3
Query: 153 QEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSL 332
Q Y FE N +++E W SF ++ +Y IF G++ M R F L+ PL++WS
Sbjct: 16 QPYNFELFRNMRP---FLEEYWTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSF 72
Query: 333 SLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 512
LAVFSIFG LR YM +L+ K +VC F + P+ +FW++ FVLSK ELGDT
Sbjct: 73 CLAVFSIFGTLRVWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDTA 132
Query: 513 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGF 692
FIILRK+ LIF+HWYHH TVL+YS + YK+ VA GGWFMTMN+GVH+VMY+YY L+AA
Sbjct: 133 FIILRKRPLIFVHWYHHSTVLVYSSFGYKNKVAAGGWFMTMNFGVHAVMYTYYTLKAAKV 192
Query: 693 RVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCH 872
+ F M +T QI QM +G V L + W Q+ C++ + FWS ++Y +Y VLF
Sbjct: 193 KSPSWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYATYFVLFAK 252
Query: 873 FFFEAYI 893
FF + YI
Sbjct: 253 FFHQNYI 259
>ref|XP_002698497.1| PREDICTED: elongation of very long chain fatty acids (FEN1/Elo2,
SUR4/Elo3, yeast)-like 3 [Bos taurus].
Length = 270
Score = 244 bits (622), Expect = 3e-64
Identities = 118/247 (47%), Positives = 158/247 (63%)
Frame = +3
Query: 153 QEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSL 332
Q Y FE N +++E W SF ++ +Y IF G++ M R F L+ PL++WS
Sbjct: 16 QPYNFELFRNMRP---FLEEYWTTSFAIALIYLLLIFVGQNYMKARKGFNLQGPLIIWSF 72
Query: 333 SLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 512
LAVFSIFG LR YM +L+ K +VC F + P+ +FW++ FVLSK ELGDT
Sbjct: 73 CLAVFSIFGTLRVWGYMGAVLLRGSPKQTVCFTSFVDSPIIQFWSFLFVLSKVVELGDTA 132
Query: 513 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGF 692
FIILRK+ LIF+HWYHH TVL+YS + YK+ VA GGWFMTMN+GVH+VMY+YY L+AA
Sbjct: 133 FIILRKRPLIFVHWYHHSTVLVYSSFGYKNKVAAGGWFMTMNFGVHAVMYTYYTLKAAKV 192
Query: 693 RVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCH 872
+ F M +T QI QM +G V L + W Q+ C++ + FWS ++Y +Y VLF
Sbjct: 193 KSPSWFPMLVTSLQILQMFIGATVCILAYIWRQEKGCHTTEEHFFWSFILYATYFVLFAK 252
Query: 873 FFFEAYI 893
FF + YI
Sbjct: 253 FFHQNYI 259
>ref|NP_001071510.1| elongation of very long chain fatty acids protein 7 [Bos taurus].
Length = 281
Score = 90.5 bits (223), Expect = 5e-18
Identities = 77/246 (31%), Positives = 122/246 (49%), Gaps = 17/246 (6%)
Frame = +3
Query: 231 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTKG 407
++ Y F+ G +M R FEL+K ++ ++ S+ +FS++ + +I+ G
Sbjct: 39 IILGFYVYFVTSLGPKLMENRKPFELKKVMITYNFSIVLFSVY------MFYEFIMSGWG 92
Query: 408 LKYSV-CDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYH 560
YS CD Y+ V W Y F SK EL DTIF ILRK+ ++ FLH +H
Sbjct: 93 TGYSFRCDIVDYSQSPTALRMVRTCWLYYF--SKFIELLDTIFFILRKKNSQVTFLHVFH 150
Query: 561 HITVLLYSWYSYKDMVAGG-GWFMT-MNYGVHSVMYSYYALRAAG--FRVSRKFAMFITL 728
H T++ ++W+ AGG G F +N VH VMYSYY L A G ++ + ++T
Sbjct: 151 H-TIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGLCALGPDYQKYLWWKKYLTS 209
Query: 729 SQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAYIGKMR 905
Q+ Q + ++ + + + C FP + + Y +L+LF HF++ AY R
Sbjct: 210 LQLIQFV---LITIHISQFFFMEDCKYQFPVFQYIIMSYGCIFLLLFLHFWYRAYTKGQR 266
Query: 906 --KTTK 917
KT K
Sbjct: 267 LPKTVK 272
>ref|NP_001092520.1| elongation of very long chain fatty acids protein 4 [Bos taurus].
Length = 314
Score = 85.1 bits (209), Expect = 2e-16
Identities = 70/262 (26%), Positives = 122/262 (46%), Gaps = 14/262 (5%)
Frame = +3
Query: 147 TLQEYEFEKQFNENEAIQW-MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVL 323
T++ Y + + W + ++ + +S LY F++ G M R F++R L+L
Sbjct: 22 TVEFYRWTLSITDKRVENWPLMQSPLPTLCISTLYLLFVWLGPKWMKDREPFQMRLVLIL 81
Query: 324 WSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYA----FVLS 485
++ + + + IF L G+Y G Y +C Y+ V + A + +S
Sbjct: 82 YNFGMVLLNLFIFRELLMGSY------NAGYSY-ICQTVDYSDNVHEVRIAAALWWYFIS 134
Query: 486 KAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSV 656
K E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H +
Sbjct: 135 KGIEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQINSFIHVI 194
Query: 657 MYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IF 827
MYSYY L A G + + + ++T+ Q+ Q V + H FP +
Sbjct: 195 MYSYYGLAAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMH 248
Query: 828 WSSLMY-LSYLVLFCHFFFEAY 890
W+ ++Y +S++ LF +F+ Y
Sbjct: 249 WALIVYAVSFIFLFLNFYVRTY 270
>ref|NP_001029875.1| elongation of very long chain fatty acids protein 1 [Bos taurus].
Length = 279
Score = 78.2 bits (191), Expect = 2e-14
Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 12/234 (5%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 404
S L++ +Y G R +M R F+LR +V+++ SL S+ Y++Y +
Sbjct: 33 SILLTYVYFVLSLGPR-IMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 83
Query: 405 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 557
G S CD F N P + A+ F+ SK EL DT+ +LRK+ ++ FLH +
Sbjct: 84 GWLSSYTWRCDPVDFSNNPEALRMVRVAWLFLFSKFIELIDTLIFVLRKKDGQVTFLHVF 143
Query: 558 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLS 731
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 201
Query: 732 QITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
Q++ +V+ + + C +P I MY + VLF +F++++Y
Sbjct: 202 TAIQLIQFVLVSLHISQYYFLPSCNYQYPVIIHLIWMYGTIFFVLFSNFWYQSY 255
>ref|NP_001040062.1| elongation of very long chain fatty acids protein 5 [Bos taurus].
Length = 299
Score = 74.3 bits (181), Expect = 4e-13
Identities = 66/242 (27%), Positives = 110/242 (45%), Gaps = 12/242 (4%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSI--FGALRTG 374
++ +N+ + + S LY ++ G M R F R LV+++L L + S+ F L TG
Sbjct: 27 FLLDNYVPTLVCSILYLLIVWLGPKYMKTRQPFSCRGILVVYNLGLTLLSLYMFCELVTG 86
Query: 375 AYMLYILMTKGLKYSVCDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ- 533
+ +G +Y+ QG +G + W Y F SK E DT F ILRK
Sbjct: 87 VW-------EG-QYNFFCQGTRSGGEADMKIIRVLWWYYF--SKLIEFMDTFFFILRKNN 136
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRA-AGFRVSR 704
++ LH YHH ++L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 137 HQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSIPSMRPYL 196
Query: 705 KFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFE 884
+ +IT Q+ Q ++ + W C +++ +S + LF +F+ +
Sbjct: 197 WWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLITLFTNFYIQ 252
Query: 885 AY 890
Y
Sbjct: 253 TY 254
>ref|NP_001076986.1| elongation of very long chain fatty acids protein 2 [Bos taurus].
Length = 294
Score = 73.2 bits (178), Expect = 8e-13
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 17/253 (6%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
+M +++ +F ++ LY I+ G M R LR L L++L + + S AY
Sbjct: 30 FMLDSYLPTFSLTVLYLLLIWLGNRCMRNRPALSLRGILTLYNLGITLLS--------AY 81
Query: 381 MLYILMTKGLK--YSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ- 533
ML L+ + Y++ Q + + W Y F SK E DTIF +LRK+
Sbjct: 82 MLAELILSSWEGGYNLQCQDLTSAGEADIRVARVLWWYYF--SKLIEFLDTIFFVLRKKT 139
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 707
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 140 SQVTFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 197
Query: 708 F---AMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFP---NIFWSSLMYLSYLVLFC 869
+ ++T +Q+ Q L+ + H M FP IF SS M ++ ++LF
Sbjct: 198 YLWWKKYLTQAQLVQFLL------TITHTMSAVVRPCGFPLGCLIFQSSYM-MTLVILFL 250
Query: 870 HFFFEAYIGKMRK 908
+F+ + Y K K
Sbjct: 251 NFYIQTYRKKPMK 263
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,692,460
Number of extensions: 1707345
Number of successful extensions: 6687
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 6638
Number of HSP's successfully gapped: 8
Length of query: 653
Length of database: 17,681,374
Length adjustment: 109
Effective length of query: 544
Effective length of database: 14,074,782
Effective search space: 7656681408
Effective search space used: 7656681408
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007452
(1961 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545023.2| PREDICTED: similar to ELOVL family member 6, el... 524 e-148
Alignment gi|XP_543985.2| PREDICTED: similar to elongation of very long c... 239 7e-63
Alignment gi|XP_851268.1| PREDICTED: similar to ELOVL family member 7, el... 94 6e-19
Alignment gi|XP_539015.1| PREDICTED: similar to elongation of very long c... 85 3e-16
Alignment gi|XP_852962.1| PREDICTED: similar to homolog of yeast long cha... 78 3e-14
Alignment gi|XP_539650.2| PREDICTED: similar to elongation of very long c... 77 6e-14
Alignment gi|XP_545341.2| PREDICTED: similar to elongation of very long c... 72 1e-12
>ref|XP_545023.2| PREDICTED: similar to ELOVL family member 6, elongation of long
chain fatty acids (FEN1/Elo2, SUR4/Elo3-like, yeast)
[Canis familiaris].
Length = 265
Score = 524 bits (1350), Expect = e-148
Identities = 249/265 (93%), Positives = 258/265 (97%)
Frame = +3
Query: 129 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 308
MNMSVL LQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLALQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 309 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 488
KPLVLWSL+LAVFSIFGALRTGAYM+YILMTKGLK SVCDQ FYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQSFYNGPVSKFWAYAFVLSK 120
Query: 489 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 668
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 669 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYL 848
YALRAAGFRVSRKFAMFITLSQITQML+GCV+NYLVF+WMQ DQC+SHF NIFWSSLMYL
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVINYLVFYWMQHDQCHSHFQNIFWSSLMYL 240
Query: 849 SYLVLFCHFFFEAYIGKMRKTTKAD 923
SYLVLFCHFFFEAYIGK RKTTKA+
Sbjct: 241 SYLVLFCHFFFEAYIGKRRKTTKAE 265
>ref|XP_543985.2| PREDICTED: similar to elongation of very long chain fatty acids
like 3 [Canis familiaris].
Length = 255
Score = 239 bits (610), Expect = 7e-63
Identities = 113/233 (48%), Positives = 156/233 (66%), Gaps = 1/233 (0%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 404
SF ++ +Y IF G++ M R F L++PL+LWS LAVFSI GA+RT +M +L+ +
Sbjct: 22 SFPIALVYLLLIFVGQNYMKARKGFNLQRPLILWSFCLAVFSILGAVRTWGHMGALLLRR 81
Query: 405 GLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQKLIFLHWYHHITVLLYS 584
LK +VC + N P+ KFW+ F+LSK ELGDT FIILRK+ LIF+HWYHH TVL+Y+
Sbjct: 82 SLKQTVCFSIYINNPIVKFWSCLFLLSKIIELGDTAFIILRKRPLIFVHWYHHSTVLVYT 141
Query: 585 WYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQMLVGCVV 764
+ YK+ V GGWFMTMNYGVHS+MY YY LRAA + M IT Q+ QM +G +
Sbjct: 142 SFGYKNKVPSGGWFMTMNYGVHSIMYIYYTLRAAKVKSPTWLPMLITSLQLLQMFMGATI 201
Query: 765 NYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFEAYI-GKMRKTTKA 920
+ L + W Q+ C++ + FWS ++Y +Y +LF HFF + YI K++ TK+
Sbjct: 202 SILTYIWRQEQGCHTTAEHFFWSLILYATYFILFAHFFHQTYIVPKVKAKTKS 254
>ref|XP_851268.1| PREDICTED: similar to ELOVL family member 7, elongation of long
chain fatty acids [Canis familiaris].
Length = 281
Score = 93.6 bits (231), Expect = 6e-19
Identities = 79/248 (31%), Positives = 123/248 (49%), Gaps = 19/248 (7%)
Frame = +3
Query: 231 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 401
++ LY F+ G +M R +EL+K ++ ++ S+ +FS+ YM Y ++
Sbjct: 39 IILGLYVYFVTSLGPKLMENRKPYELKKAMITYNFSIVLFSV--------YMCYEFVMSG 90
Query: 402 KGLKYSV-CDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 554
G YS C+ Y+ S W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGTGYSFRCEIVDYSQSPSALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 555 YHHITVLLYSWYSYKDMVAGG-GWFMT-MNYGVHSVMYSYYALRAAG--FRVSRKFAMFI 722
+HH T++ ++W+ AGG G F +N VH VMYSYY L A G F+ + ++
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGLSALGPAFQKYLWWKKYL 207
Query: 723 TLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAYIGK 899
T Q+ Q + +V + + + C FP + + Y +L+LF HF++ AY
Sbjct: 208 TSLQLVQFI---IVTIHIGQFFFMEDCKYQFPVFLYIIMSYGCIFLLLFLHFWYRAYTKG 264
Query: 900 MR--KTTK 917
R KT K
Sbjct: 265 QRLPKTVK 272
>ref|XP_539015.1| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 4 [Canis familiaris].
Length = 314
Score = 84.7 bits (208), Expect = 3e-16
Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 14/262 (5%)
Frame = +3
Query: 147 TLQEYEFEKQFNENEAIQW-MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVL 323
T++ Y + + W + ++ + +S LY F++ G M R F++R L++
Sbjct: 22 TVEFYRWTWSITDKRVENWPLMQSPLPTLCISTLYLLFVWLGPKWMKDREPFQMRLVLII 81
Query: 324 WSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYA----FVLS 485
++ + + + IF L G+Y G Y +C Y+ V++ A + +S
Sbjct: 82 YNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSDNVNEVRIAAALWWYFVS 134
Query: 486 KAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSV 656
K E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H +
Sbjct: 135 KGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHVI 194
Query: 657 MYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IF 827
MYSYY L A G + + + ++T+ Q+ Q V + H FP +
Sbjct: 195 MYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMH 248
Query: 828 WSSLMY-LSYLVLFCHFFFEAY 890
W+ + Y +S++ LF +F+ Y
Sbjct: 249 WALIAYAISFIFLFLNFYVRTY 270
>ref|XP_852962.1| PREDICTED: similar to homolog of yeast long chain polyunsaturated
fatty acid elongatio [Canis familiaris].
Length = 471
Score = 78.2 bits (191), Expect = 3e-14
Identities = 77/293 (26%), Positives = 127/293 (43%), Gaps = 14/293 (4%)
Frame = +3
Query: 54 RRRVPERGAESPGTENT*RLRRSAPMNMSVLTLQEYEFEKQFNENEAIQ--WMQENWKKS 227
RR P R A +PG RR M +L Y + ++ ++ +N+ +
Sbjct: 155 RRAAPPRAAAAPG-------RRGFKMENFDASLSTYFKALLGPRDTRVKGWFLLDNYIPT 207
Query: 228 FLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSI--FGALRTGAYMLYILMT 401
F+ S +Y ++ G M R F R LV+++L L + S+ F L TG +
Sbjct: 208 FICSVIYLLIVWLGPKYMKNRQPFSCRGILVVYNLGLTLLSLYMFCELVTGVW------- 260
Query: 402 KGLKYSVCDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 557
+G +Y+ QG + + W Y F SK E DT F ILRK ++ LH Y
Sbjct: 261 EG-RYNFFCQGTRSAGEADMKIIRVLWWYYF--SKLIEFMDTFFFILRKNNHQITVLHVY 317
Query: 558 HHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAA-GFRVSRKFAMFITLS 731
HH ++L W+ + G +F T+N +H +MYSYY L + R + +IT
Sbjct: 318 HHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYLWWKKYITQG 377
Query: 732 QITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFEAY 890
Q+ Q ++ + W C +++ +S + LF +F+ + Y
Sbjct: 378 QLLQFVLTIIQTSCGVIW----PCSFPLGWLYFQIGYMISLIALFTNFYIQTY 426
>ref|XP_539650.2| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 1 [Canis familiaris].
Length = 278
Score = 77.0 bits (188), Expect = 6e-14
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 8/230 (3%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFS---IFGALRTGAYMLYIL 395
S L++ +Y G R +M R F+LR +++++ SL S ++ L +G Y
Sbjct: 33 SILLTYVYFVLSLGPR-IMANRKPFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTW 91
Query: 396 MTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHIT 569
+ YS + V A+ F+ SK EL DT+ ILRK+ ++ FLH +HH +
Sbjct: 92 RCDPVDYSNSPEALRMVRV----AWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH-S 146
Query: 570 VLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQ 743
VL +SW+ + GG G F M N VH VMY YY L A G V++ + + Q
Sbjct: 147 VLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMTAIQ 205
Query: 744 MLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
++ +V+ + + C +P I MY + VLF +F++ +Y
Sbjct: 206 LIQFVLVSLHISQYYFMPSCDYQYPVIIHLIWMYGTIFFVLFSNFWYHSY 255
>ref|XP_545341.2| PREDICTED: similar to elongation of very long chain fatty acids
(FEN1/Elo2, SUR4/Elo3, yeast)-like 2 [Canis familiaris].
Length = 328
Score = 72.4 bits (176), Expect = 1e-12
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 17/247 (6%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
+M +++ +F ++ LY I+ G M R LR L L++L + + S+ Y
Sbjct: 62 FMLDSYLPTFFLTVLYLLSIWLGNKYMKNRHALSLRGILTLYNLGITLLSL--------Y 113
Query: 381 MLYILMTKGLK-------YSVCDQGFYNGPVSK-FWAYAFVLSKAPELGDTIFIILRKQ- 533
ML L+ + + G + V+K W Y F SK+ E DTIF +LRK+
Sbjct: 114 MLAELLLSSWEGGYNLQCQDLTSAGEADVRVAKVLWWYYF--SKSIEFLDTIFFVLRKKT 171
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 707
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 172 SQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 229
Query: 708 F---AMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFP---NIFWSSLMYLSYLVLFC 869
+ ++T +Q+ Q ++ + H M FP IF SS M L+ ++LF
Sbjct: 230 YLWWKKYLTQAQLVQFVL------TITHTMSAVVKPCGFPLGCLIFQSSYM-LTLVILFL 282
Query: 870 HFFFEAY 890
+F+ + Y
Sbjct: 283 NFYAQTY 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,313,054
Number of extensions: 1703525
Number of successful extensions: 7136
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6990
Number of HSP's successfully gapped: 7
Length of query: 653
Length of database: 18,874,504
Length adjustment: 109
Effective length of query: 544
Effective length of database: 15,240,880
Effective search space: 8291038720
Effective search space used: 8291038720
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007452
(1961 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001124193.1| elongation of very long chain fatty acids pr... 529 e-150
Alignment gi|NP_076995.1| elongation of very long chain fatty acids prote... 529 e-150
Alignment gi|NP_689523.1| elongation of very long chain fatty acids prote... 244 2e-64
Alignment gi|NP_001098028.1| elongation of very long chain fatty acids pr... 89 1e-17
Alignment gi|NP_079206.2| elongation of very long chain fatty acids prote... 89 1e-17
Alignment gi|NP_073563.1| elongation of very long chain fatty acids prote... 86 1e-16
Alignment gi|NP_073732.1| elongation of very long chain fatty acids prote... 76 1e-13
Alignment gi|NP_068586.1| elongation of very long chain fatty acids prote... 75 2e-13
Alignment gi|NP_060240.3| elongation of very long chain fatty acids prote... 74 4e-13
Alignment gi|NP_001229757.1| elongation of very long chain fatty acids pr... 68 4e-11
>ref|NP_001124193.1| elongation of very long chain fatty acids protein 6 [Homo sapiens].
Length = 265
Score = 529 bits (1363), Expect = e-150
Identities = 253/265 (95%), Positives = 260/265 (98%)
Frame = +3
Query: 129 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 308
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 309 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 488
KPLVLWSL+LAVFSIFGALRTGAYM+YILMTKGLK SVCDQGFYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSK 120
Query: 489 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 668
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 669 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYL 848
YALRAAGFRVSRKFAMFITLSQITQML+GCVVNYLVF WMQ DQC+SHF NIFWSSLMYL
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYL 240
Query: 849 SYLVLFCHFFFEAYIGKMRKTTKAD 923
SYLVLFCHFFFEAYIGKMRKTTKA+
Sbjct: 241 SYLVLFCHFFFEAYIGKMRKTTKAE 265
>ref|NP_076995.1| elongation of very long chain fatty acids protein 6 [Homo sapiens].
Length = 265
Score = 529 bits (1363), Expect = e-150
Identities = 253/265 (95%), Positives = 260/265 (98%)
Frame = +3
Query: 129 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 308
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 309 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 488
KPLVLWSL+LAVFSIFGALRTGAYM+YILMTKGLK SVCDQGFYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMVYILMTKGLKQSVCDQGFYNGPVSKFWAYAFVLSK 120
Query: 489 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 668
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 669 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYL 848
YALRAAGFRVSRKFAMFITLSQITQML+GCVVNYLVF WMQ DQC+SHF NIFWSSLMYL
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVVNYLVFCWMQHDQCHSHFQNIFWSSLMYL 240
Query: 849 SYLVLFCHFFFEAYIGKMRKTTKAD 923
SYLVLFCHFFFEAYIGKMRKTTKA+
Sbjct: 241 SYLVLFCHFFFEAYIGKMRKTTKAE 265
>ref|NP_689523.1| elongation of very long chain fatty acids protein 3 [Homo sapiens].
Length = 270
Score = 244 bits (623), Expect = 2e-64
Identities = 116/257 (45%), Positives = 166/257 (64%), Gaps = 1/257 (0%)
Frame = +3
Query: 153 QEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSL 332
Q Y FE + + +E W SF ++ +Y I G++ M +R F L+ PL+LWS
Sbjct: 16 QPYNFELS---KDMRPFFEEYWATSFPIALIYLVLIAVGQNYMKERKGFNLQGPLILWSF 72
Query: 333 SLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTI 512
LA+FSI GA+R M +L+T GLK +VC F + KFW++ F+LSK ELGDT
Sbjct: 73 CLAIFSILGAVRMWGIMGTVLLTGGLKQTVCFINFIDNSTVKFWSWVFLLSKVIELGDTA 132
Query: 513 FIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGF 692
FIILRK+ LIF+HWYHH TVL+Y+ + YK+ V GGWF+TMN+GVH++MY+YY L+AA
Sbjct: 133 FIILRKRPLIFIHWYHHSTVLVYTSFGYKNKVPAGGWFVTMNFGVHAIMYTYYTLKAANV 192
Query: 693 RVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCH 872
+ + M IT QI QM VG +V+ L + W Q C++ ++FWS ++Y++Y +LF H
Sbjct: 193 KPPKMLPMLITSLQILQMFVGAIVSILTYIWRQDQGCHTTMEHLFWSFILYMTYFILFAH 252
Query: 873 FFFEAYI-GKMRKTTKA 920
FF + YI K++ TK+
Sbjct: 253 FFCQTYIRPKVKAKTKS 269
>ref|NP_001098028.1| elongation of very long chain fatty acids protein 7 [Homo sapiens].
Length = 281
Score = 89.4 bits (220), Expect = 1e-17
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 20/249 (8%)
Frame = +3
Query: 231 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 401
++ Y F+ G +M R FEL+K ++ ++ + +FS+ YM Y ++
Sbjct: 39 ILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSG 90
Query: 402 KGLKYSV-CDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 554
G+ YS CD Y+ + W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGIGYSFRCDIVDYSRSPTALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 555 YHHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAG--FRVSRKFAMFI 722
+HH T++ ++W+ AGG G F + N VH VMYSYY L A G ++ + ++
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYL 207
Query: 723 TLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLS--YLVLFCHFFFEAYIG 896
T Q+ Q ++ ++ F +M + C FP +F +M S +L+LF HF++ AY
Sbjct: 208 TSLQLVQFVI-VAIHISQFFFM--EDCKYQFP-VFACIIMSYSFMFLLLFLHFWYRAYTK 263
Query: 897 KMR--KTTK 917
R KT K
Sbjct: 264 GQRLPKTVK 272
>ref|NP_079206.2| elongation of very long chain fatty acids protein 7 [Homo sapiens].
Length = 281
Score = 89.4 bits (220), Expect = 1e-17
Identities = 80/249 (32%), Positives = 126/249 (50%), Gaps = 20/249 (8%)
Frame = +3
Query: 231 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 401
++ Y F+ G +M R FEL+K ++ ++ + +FS+ YM Y ++
Sbjct: 39 ILLGFYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSG 90
Query: 402 KGLKYSV-CDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 554
G+ YS CD Y+ + W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGIGYSFRCDIVDYSRSPTALRMARTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 555 YHHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAG--FRVSRKFAMFI 722
+HH T++ ++W+ AGG G F + N VH VMYSYY L A G ++ + ++
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHALLNTAVHVVMYSYYGLSALGPAYQKYLWWKKYL 207
Query: 723 TLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLS--YLVLFCHFFFEAYIG 896
T Q+ Q ++ ++ F +M + C FP +F +M S +L+LF HF++ AY
Sbjct: 208 TSLQLVQFVI-VAIHISQFFFM--EDCKYQFP-VFACIIMSYSFMFLLLFLHFWYRAYTK 263
Query: 897 KMR--KTTK 917
R KT K
Sbjct: 264 GQRLPKTVK 272
>ref|NP_073563.1| elongation of very long chain fatty acids protein 4 [Homo sapiens].
Length = 314
Score = 85.9 bits (211), Expect = 1e-16
Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 15/263 (5%)
Frame = +3
Query: 147 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 320
T++ Y + + W MQ W + +S LY F++ G M R F++R L+
Sbjct: 22 TVEFYRWTWSIADKRVENWPLMQSPWP-TLSISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
Query: 321 LWSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYA----FVL 482
+++ + + + IF L G+Y G Y +C Y+ V + A + +
Sbjct: 81 IYNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSNNVHEVRIAAALWWYFV 133
Query: 483 SKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHS 653
SK E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H
Sbjct: 134 SKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQLNSFIHV 193
Query: 654 VMYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-I 824
+MYSYY L A G + + + ++T+ Q+ Q V + H FP +
Sbjct: 194 IMYSYYGLTAFGPWIQKYLWWKRYLTMLQLIQFHV------TIGHTALSLYTDCPFPKWM 247
Query: 825 FWSSLMY-LSYLVLFCHFFFEAY 890
W+ + Y +S++ LF +F+ Y
Sbjct: 248 HWALIAYAISFIFLFLNFYIRTY 270
>ref|NP_073732.1| elongation of very long chain fatty acids protein 1 [Homo sapiens].
Length = 279
Score = 75.9 bits (185), Expect = 1e-13
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 8/230 (3%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFS---IFGALRTGAYMLYIL 395
S L++ +Y G R +M R F+LR +++++ SL S ++ L +G Y
Sbjct: 33 SILLTYVYFVLSLGPR-IMANRKPFQLRGFMIVYNFSLVALSLYIVYEFLMSGWLSTYTW 91
Query: 396 MTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHIT 569
+ YS + V A+ F+ SK EL DT+ ILRK+ ++ FLH +HH +
Sbjct: 92 RCDPVDYSNSPEALRMVRV----AWLFLFSKFIELMDTVIFILRKKDGQVTFLHVFHH-S 146
Query: 570 VLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQ 743
VL +SW+ + GG G F M N VH +MY YY L A G V++ + + Q
Sbjct: 147 VLPWSWWWGVKIAPGGMGSFHAMINSSVHVIMYLYYGLSAFG-PVAQPYLWWKKHMTAIQ 205
Query: 744 MLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
++ +V+ + + C +P I MY + +LF +F++ +Y
Sbjct: 206 LIQFVLVSLHISQYYFMSSCNYQYPVIIHLIWMYGTIFFMLFSNFWYHSY 255
>ref|NP_068586.1| elongation of very long chain fatty acids protein 5 isoform 1 [Homo
sapiens].
Length = 299
Score = 75.1 bits (183), Expect = 2e-13
Identities = 66/242 (27%), Positives = 109/242 (45%), Gaps = 12/242 (4%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSI--FGALRTG 374
++ +N+ +F+ S +Y ++ G M + F R LV+++L L + S+ F L TG
Sbjct: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCELVTG 86
Query: 375 AYMLYILMTKGLKYSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ- 533
+ +G KY+ QG S W Y F SK E DT F ILRK
Sbjct: 87 VW-------EG-KYNFFCQGTRTAGESDMKIIRVLWWYYF--SKLIEFMDTFFFILRKNN 136
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAA-GFRVSR 704
++ LH YHH ++L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 137 HQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSVPSMRPYL 196
Query: 705 KFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFE 884
+ +IT Q+ Q ++ + W C +++ +S + LF +F+ +
Sbjct: 197 WWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLYFQIGYMISLIALFTNFYIQ 252
Query: 885 AY 890
Y
Sbjct: 253 TY 254
>ref|NP_060240.3| elongation of very long chain fatty acids protein 2 [Homo sapiens].
Length = 296
Score = 74.3 bits (181), Expect = 4e-13
Identities = 72/252 (28%), Positives = 117/252 (46%), Gaps = 16/252 (6%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
+M +++ +F ++ +Y I+ G M R LR L L++L + + S AY
Sbjct: 30 FMLDSYLPTFFLTVMYLLSIWLGNKYMKNRPALSLRGILTLYNLGITLLS--------AY 81
Query: 381 ML--YILMTKGLKYSVCDQGFYNGP-----VSK-FWAYAFVLSKAPELGDTIFIILRKQ- 533
ML IL T Y++ Q + V+K W Y F SK+ E DTIF +LRK+
Sbjct: 82 MLAELILSTWEGGYNLQCQDLTSAGEADIRVAKVLWWYYF--SKSVEFLDTIFFVLRKKT 139
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 707
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 140 SQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 197
Query: 708 F---AMFITLSQITQMLVGCVVNYLVFHWMQQ--DQCYSHFPNIFWSSLMYLSYLVLFCH 872
+ ++T +Q+ Q ++ + H M C F + + S L+ ++LF +
Sbjct: 198 YLWWKKYLTQAQLVQFVL------TITHTMSAVVKPCGFPFGCLIFQSSYMLTLVILFLN 251
Query: 873 FFFEAYIGKMRK 908
F+ + Y K K
Sbjct: 252 FYVQTYRKKPMK 263
>ref|NP_001229757.1| elongation of very long chain fatty acids protein 5 isoform 2 [Homo
sapiens].
Length = 326
Score = 67.8 bits (164), Expect = 4e-11
Identities = 66/261 (25%), Positives = 108/261 (41%), Gaps = 31/261 (11%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFG------- 359
++ +N+ +F+ S +Y ++ G M + F R LV+++L L + S++
Sbjct: 27 FLLDNYIPTFICSVIYLLIVWLGPKYMRNKQPFSCRGILVVYNLGLTLLSLYMFCESKRE 86
Query: 360 -------ALRTGAYMLYILMTKGL-------KYSVCDQGFYNGPVSKF------WAYAFV 479
A RT L L KY+ QG S W Y F
Sbjct: 87 QPRRSACASRTDPSTQQQLPENRLVTGVWEGKYNFFCQGTRTAGESDMKIIRVLWWYYF- 145
Query: 480 LSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVH 650
SK E DT F ILRK ++ LH YHH ++L W+ + G +F T+N +H
Sbjct: 146 -SKLIEFMDTFFFILRKNNHQITVLHVYHHASMLNIWWFVMNWVPCGHSYFGATLNSFIH 204
Query: 651 SVMYSYYALRAA-GFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIF 827
+MYSYY L + R + +IT Q+ Q ++ + W C ++
Sbjct: 205 VLMYSYYGLSSVPSMRPYLWWKKYITQGQLLQFVLTIIQTSCGVIW----PCTFPLGWLY 260
Query: 828 WSSLMYLSYLVLFCHFFFEAY 890
+ +S + LF +F+ + Y
Sbjct: 261 FQIGYMISLIALFTNFYIQTY 281
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 69,055,831
Number of extensions: 1675695
Number of successful extensions: 6290
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 6258
Number of HSP's successfully gapped: 11
Length of query: 653
Length of database: 18,297,164
Length adjustment: 109
Effective length of query: 544
Effective length of database: 14,704,088
Effective search space: 7999023872
Effective search space used: 7999023872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007452
(1961 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_569717.1| elongation of very long chain fatty acids prote... 521 e-148
Alignment gi|NP_031729.1| elongation of very long chain fatty acids prote... 236 4e-62
Alignment gi|NP_001139446.1| elongation of very long chain fatty acids pr... 88 2e-17
Alignment gi|NP_683743.2| elongation of very long chain fatty acids prote... 88 2e-17
Alignment gi|NP_083277.3| elongation of very long chain fatty acids prote... 87 6e-17
Alignment gi|NP_599016.2| elongation of very long chain fatty acids prote... 82 2e-15
Alignment gi|NP_001034265.1| elongation of very long chain fatty acids pr... 80 6e-15
Alignment gi|NP_062295.1| elongation of very long chain fatty acids prote... 80 6e-15
Alignment gi|NP_062296.1| elongation of very long chain fatty acids prote... 69 1e-11
Alignment gi|NP_001034264.1| elongation of very long chain fatty acids pr... 68 3e-11
>ref|NP_569717.1| elongation of very long chain fatty acids protein 6 [Mus musculus].
Length = 267
Score = 521 bits (1343), Expect = e-148
Identities = 250/267 (93%), Positives = 259/267 (97%), Gaps = 2/267 (0%)
Frame = +3
Query: 129 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 308
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFL SALYAAFIFGGRH+MNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLFSALYAAFIFGGRHLMNKRAKFELR 60
Query: 309 KPLVLWSLSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSK 488
KPLVLWSL+LAVFSIFGALRTGAYMLYILMTKGLK SVCDQ FYNGPVSKFWAYAFVLSK
Sbjct: 61 KPLVLWSLTLAVFSIFGALRTGAYMLYILMTKGLKQSVCDQSFYNGPVSKFWAYAFVLSK 120
Query: 489 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSY 668
APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVH+VMYSY
Sbjct: 121 APELGDTIFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHAVMYSY 180
Query: 669 YALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQ--QDQCYSHFPNIFWSSLM 842
YALRAAGFRVSRKFAMFITLSQITQML+GCV+NYLVF+WMQ DQCYSHF NIFWSSLM
Sbjct: 181 YALRAAGFRVSRKFAMFITLSQITQMLMGCVINYLVFNWMQHDNDQCYSHFQNIFWSSLM 240
Query: 843 YLSYLVLFCHFFFEAYIGKMRKTTKAD 923
YLSYLVLFCHFFFEAYIGK++K TKA+
Sbjct: 241 YLSYLVLFCHFFFEAYIGKVKKATKAE 267
>ref|NP_031729.1| elongation of very long chain fatty acids protein 3 [Mus musculus].
Length = 271
Score = 236 bits (603), Expect = 4e-62
Identities = 112/248 (45%), Positives = 159/248 (64%)
Frame = +3
Query: 150 LQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWS 329
+Q Y+FE + +++E W SFL+ +Y I G+ M R F L++PL+LWS
Sbjct: 16 MQPYDFE---TFQDLRPFLEEYWVSSFLIVVVYLLLIVVGQTYMRTRKSFSLQRPLILWS 72
Query: 330 LSLAVFSIFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDT 509
LA+FSI G LR +M ++ T GLK +VC + + V +FW++ F+LSK ELGDT
Sbjct: 73 FFLAIFSILGTLRMWKFMATVMFTVGLKQTVCFAIYTDDAVVRFWSFLFLLSKVVELGDT 132
Query: 510 IFIILRKQKLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAG 689
FIILRK+ LIF+HWYHH TVLL++ + YK+ V GGWFMTMN+GVHSVMY+YY ++AA
Sbjct: 133 AFIILRKRPLIFVHWYHHSTVLLFTSFGYKNKVPSGGWFMTMNFGVHSVMYTYYTMKAAK 192
Query: 690 FRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFC 869
+ M IT QI QM++G + L + W Q+ C++ + FWS ++Y +Y +LF
Sbjct: 193 LKHPNLLPMVITSLQILQMVLGTIFGILNYIWRQEKGCHTTTEHFFWSFMLYGTYFILFA 252
Query: 870 HFFFEAYI 893
HFF AY+
Sbjct: 253 HFFHRAYL 260
>ref|NP_001139446.1| elongation of very long chain fatty acids protein 4 [Mus musculus].
Length = 312
Score = 88.2 bits (217), Expect = 2e-17
Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 17/265 (6%)
Frame = +3
Query: 147 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 320
T++ Y + + W MQ W + +S LY F++ G M R F++R L+
Sbjct: 22 TVEFYRWTWTIADKRVADWPLMQSPWP-TISISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
Query: 321 LWSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSK------FWAYAF 476
+++ + + + IF L G+Y G Y +C Y+ V++ W Y
Sbjct: 81 IYNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSNDVNEVRIAGALWWY-- 131
Query: 477 VLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGV 647
+SK E DT+F ILRK+ ++ FLH YHH T+ W K + G +F MN +
Sbjct: 132 FVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFI 191
Query: 648 HSVMYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN 821
H +MYSYY L A G + + + ++T+ Q+ Q V + H FP
Sbjct: 192 HVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPK 245
Query: 822 -IFWSSLMY-LSYLVLFCHFFFEAY 890
+ W+ + Y +S++ LF +F+ Y
Sbjct: 246 WMHWALIAYAISFIFLFLNFYTRTY 270
>ref|NP_683743.2| elongation of very long chain fatty acids protein 4 [Mus musculus].
Length = 312
Score = 88.2 bits (217), Expect = 2e-17
Identities = 74/265 (27%), Positives = 122/265 (46%), Gaps = 17/265 (6%)
Frame = +3
Query: 147 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 320
T++ Y + + W MQ W + +S LY F++ G M R F++R L+
Sbjct: 22 TVEFYRWTWTIADKRVADWPLMQSPWP-TISISTLYLLFVWLGPKWMKDREPFQMRLVLI 80
Query: 321 LWSLSLAVFS--IFGALRTGAYMLYILMTKGLKYSVCDQGFYNGPVSK------FWAYAF 476
+++ + + + IF L G+Y G Y +C Y+ V++ W Y
Sbjct: 81 IYNFGMVLLNLFIFRELFMGSY------NAGYSY-ICQSVDYSNDVNEVRIAGALWWY-- 131
Query: 477 VLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGV 647
+SK E DT+F ILRK+ ++ FLH YHH T+ W K + G +F MN +
Sbjct: 132 FVSKGVEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVAGGQAFFGAQMNSFI 191
Query: 648 HSVMYSYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN 821
H +MYSYY L A G + + + ++T+ Q+ Q V + H FP
Sbjct: 192 HVIMYSYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPK 245
Query: 822 -IFWSSLMY-LSYLVLFCHFFFEAY 890
+ W+ + Y +S++ LF +F+ Y
Sbjct: 246 WMHWALIAYAISFIFLFLNFYTRTY 270
>ref|NP_083277.3| elongation of very long chain fatty acids protein 7 [Mus musculus].
Length = 281
Score = 86.7 bits (213), Expect = 6e-17
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 18/238 (7%)
Frame = +3
Query: 231 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLY--ILMT 401
++ LY F+ G +M R FEL+K ++ ++ + +FS+ YM Y ++
Sbjct: 39 IILGLYVYFVTSLGPKLMENRKPFELKKAMITYNFFIVLFSV--------YMCYEFVMSG 90
Query: 402 KGLKYSV-CDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHW 554
G YS CD Y+ V W Y F SK EL DTIF +LRK+ ++ FLH
Sbjct: 91 WGTGYSFRCDIVDYSQSPRAMRMVHTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHV 148
Query: 555 YHHITVLLYSWYSYKDMVAGG-GWFMT-MNYGVHSVMYSYYALRAAG--FRVSRKFAMFI 722
+HH T++ ++W+ AGG G F +N VH VMYSYY L A G ++ + +
Sbjct: 149 FHH-TIMPWTWWFGVKFAAGGLGTFHAFLNTAVHVVMYSYYGLCAMGPAYQKYLWWKKHL 207
Query: 723 TLSQITQ-MLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
T Q+ Q +LV + + F + C +P + + Y +L+LF HF++ AY
Sbjct: 208 TSLQLVQFVLVTIHIGQIFF----MEDCNYQYPVFLYIIMSYGCIFLLLFLHFWYRAY 261
>ref|NP_599016.2| elongation of very long chain fatty acids protein 5 [Mus musculus].
Length = 299
Score = 81.6 bits (200), Expect = 2e-15
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 13/243 (5%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
++ +N+ +F+ S +Y ++ G M R F R L L++L L + S+ Y
Sbjct: 27 FLLDNYIPTFVCSVIYLLIVWLGPKYMKNRQPFSCRGILQLYNLGLTLLSL--------Y 78
Query: 381 MLYILMTKGL---KYSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ 533
M Y L+T G+ KY+ QG + S W Y F SK E DT F ILRK
Sbjct: 79 MFYELVT-GVWEGKYNFFCQGTRSAGESDMKIIRVLWWYYF--SKLIEFMDTFFFILRKN 135
Query: 534 --KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRA-AGFRVS 701
++ LH YHH T+L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 136 NHQITVLHVYHHATMLNIWWFVMNWVPCGHSYFGATLNSFIHVLMYSYYGLSSIPSMRPY 195
Query: 702 RKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFF 881
+ +IT Q+ Q ++ + W C +F+ +S + LF +F+
Sbjct: 196 LWWKKYITQGQLVQFVLTIIQTTCGVFW----PCSFPLGWLFFQIGYMISLIALFTNFYI 251
Query: 882 EAY 890
+ Y
Sbjct: 252 QTY 254
>ref|NP_001034265.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
musculus].
Length = 279
Score = 80.1 bits (196), Expect = 6e-15
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 404
S L++ +Y G R +M R F+LR +++++ SL + S+ Y++Y +
Sbjct: 33 SILLTYVYFILSLGPR-IMANRKPFQLRGFMIVYNFSLVILSL--------YIVYEFLMS 83
Query: 405 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 557
G + CD F N P + A+ F+LSK EL DT+ ILRK+ ++ FLH +
Sbjct: 84 GWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTFLHVF 143
Query: 558 HHITVLLYSWYSYKDMVAGGGWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQ 734
HH + W+ K G G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMT 202
Query: 735 ITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
Q++ +V+ + + C +P I MY + +LF +F++ +Y
Sbjct: 203 AIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSY 255
>ref|NP_062295.1| elongation of very long chain fatty acids protein 1 isoform 1 [Mus
musculus].
Length = 279
Score = 80.1 bits (196), Expect = 6e-15
Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 11/233 (4%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 404
S L++ +Y G R +M R F+LR +++++ SL + S+ Y++Y +
Sbjct: 33 SILLTYVYFILSLGPR-IMANRKPFQLRGFMIVYNFSLVILSL--------YIVYEFLMS 83
Query: 405 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 557
G + CD F N P + A+ F+LSK EL DT+ ILRK+ ++ FLH +
Sbjct: 84 GWLSTYTWRCDPIDFSNSPEALRMVRVAWLFMLSKVIELMDTVIFILRKKDGQVTFLHVF 143
Query: 558 HHITVLLYSWYSYKDMVAGGGWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQ 734
HH + W+ K G G F M N VH VMY YY L A G V++ + +
Sbjct: 144 HHSVLPWSWWWGIKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMT 202
Query: 735 ITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
Q++ +V+ + + C +P I MY + +LF +F++ +Y
Sbjct: 203 AIQLIQFVLVSLHISQYYFMPSCNYQYPIIIHLIWMYGTIFFILFSNFWYHSY 255
>ref|NP_062296.1| elongation of very long chain fatty acids protein 2 [Mus musculus].
Length = 292
Score = 69.3 bits (168), Expect = 1e-11
Identities = 64/246 (26%), Positives = 114/246 (46%), Gaps = 16/246 (6%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
++ +++ +F+++ Y I+ G M R LR L L++L++ + S AY
Sbjct: 30 FLLDSYLPTFILTITYLLSIWLGNKYMKNRPALSLRGILTLYNLAITLLS--------AY 81
Query: 381 MLYILMTKGLK-------YSVCDQGFYNGPVSK-FWAYAFVLSKAPELGDTIFIILRKQ- 533
ML L+ + ++ G + V+K W Y F SK E DTIF +LRK+
Sbjct: 82 MLVELILSSWEGGYNLQCQNLDSAGEGDVRVAKVLWWYYF--SKLVEFLDTIFFVLRKKT 139
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 707
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 140 NQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 197
Query: 708 F---AMFITLSQITQMLVGCVVNYLVFHWMQQ--DQCYSHFPNIFWSSLMYLSYLVLFCH 872
+ ++T +Q+ Q ++ + H + C F + + S ++ ++LF +
Sbjct: 198 YLWWKKYLTQAQLVQFVL------TITHTLSAVVKPCGFPFGCLIFQSSYMMTLVILFLN 251
Query: 873 FFFEAY 890
F+ + Y
Sbjct: 252 FYIQTY 257
>ref|NP_001034264.1| elongation of very long chain fatty acids protein 1 isoform 2 [Mus
musculus].
Length = 202
Score = 67.8 bits (164), Expect = 3e-11
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Frame = +3
Query: 465 AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWFMTM- 635
A+ F+LSK EL DT+ ILRK+ ++ FLH +HH + W+ K G G F M
Sbjct: 34 AWLFMLSKVIELMDTVIFILRKKDGQVTFLHVFHHSVLPWSWWWGIKIAPGGMGSFHAMI 93
Query: 636 NYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHF 815
N VH VMY YY L A G V++ + + Q++ +V+ + + C +
Sbjct: 94 NSSVHVVMYLYYGLSALG-PVAQPYLWWKKHMTAIQLIQFVLVSLHISQYYFMPSCNYQY 152
Query: 816 PNIFWSSLMY-LSYLVLFCHFFFEAY 890
P I MY + +LF +F++ +Y
Sbjct: 153 PIIIHLIWMYGTIFFILFSNFWYHSY 178
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 58,815,422
Number of extensions: 1423540
Number of successful extensions: 5253
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 5215
Number of HSP's successfully gapped: 10
Length of query: 653
Length of database: 15,617,559
Length adjustment: 108
Effective length of query: 545
Effective length of database: 12,373,671
Effective search space: 6743650695
Effective search space used: 6743650695
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007452
(1961 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001161106.1| elongation of very long chain fatty acids pr... 249 3e-66
Alignment gi|XP_003357096.1| PREDICTED: elongation of very long chain fat... 150 2e-36
Alignment gi|XP_003361684.1| PREDICTED: elongation of very long chain fat... 84 4e-16
Alignment gi|XP_003121444.1| PREDICTED: elongation of very long chain fat... 83 6e-16
Alignment gi|XP_003361081.1| PREDICTED: elongation of very long chain fat... 80 5e-15
Alignment gi|NP_001161119.1| elongation of very long chain fatty acids pr... 76 8e-14
Alignment gi|XP_001924876.2| PREDICTED: elongation of very long chain fat... 72 9e-13
Alignment gi|XP_003356572.1| PREDICTED: elongation of very long chain fat... 61 3e-09
Alignment gi|XP_003134038.1| PREDICTED: elongation of very long chain fat... 52 2e-06
>ref|NP_001161106.1| elongation of very long chain fatty acids protein 3 [Sus scrofa].
Length = 270
Score = 249 bits (637), Expect = 3e-66
Identities = 120/241 (49%), Positives = 160/241 (66%), Gaps = 1/241 (0%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
+++E W SF + +Y IF G+ M R F L+ PL+LWS L VFSI GA+RT +
Sbjct: 29 FLEEYWATSFPIVLVYLLLIFVGQKYMKSRKGFNLQGPLILWSFCLTVFSILGAVRTWGF 88
Query: 381 MLYILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQKLIFLHWYH 560
M+ +L+ LK +VC + P+ KFW+ FVLSK ELGDT FIILRK+ LIF+HWYH
Sbjct: 89 MVAVLLRGSLKQTVCFTNSTDNPIIKFWSCLFVLSKIIELGDTAFIILRKRPLIFVHWYH 148
Query: 561 HITVLLYSWYSYKDMVAGGGWFMTMNYGVHSVMYSYYALRAAGFRVSRKFAMFITLSQIT 740
H TVLLYS + YKD VA GGWFMTMNYGVH++MY+YY LRAA + + F MFIT QI
Sbjct: 149 HSTVLLYSSFGYKDKVAAGGWFMTMNYGVHAIMYTYYTLRAAKVKPPKWFPMFITSLQIL 208
Query: 741 QMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFFEAY-IGKMRKTTK 917
QM +G V+ L + W Q+ C++ +FWS ++Y++Y +LF FF + Y I K + TK
Sbjct: 209 QMFLGATVSILTYIWKQEQGCHTTTEQLFWSFMLYMTYFLLFAQFFHQNYIIPKAKAKTK 268
Query: 918 A 920
+
Sbjct: 269 S 269
>ref|XP_003357096.1| PREDICTED: elongation of very long chain fatty acids protein 6,
partial [Sus scrofa].
Length = 73
Score = 150 bits (379), Expect = 2e-36
Identities = 73/73 (100%), Positives = 73/73 (100%)
Frame = +3
Query: 129 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 308
MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR
Sbjct: 1 MNMSVLTLQEYEFEKQFNENEAIQWMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELR 60
Query: 309 KPLVLWSLSLAVF 347
KPLVLWSLSLAVF
Sbjct: 61 KPLVLWSLSLAVF 73
>ref|XP_003361684.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
[Sus scrofa].
Length = 359
Score = 83.6 bits (205), Expect = 4e-16
Identities = 71/260 (27%), Positives = 120/260 (46%), Gaps = 12/260 (4%)
Frame = +3
Query: 147 TLQEYEFEKQFNENEAIQW--MQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLV 320
T++ Y + + W M W + +S LY F++ G M R F++R L+
Sbjct: 67 TVEFYRWTWSIADKRVENWPLMHSPWT-TLCISTLYLLFVWLGPKWMKDREPFQMRSVLI 125
Query: 321 LWSLSLAVFS--IFGALRTGAYML-YILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKA 491
+++ + + + IF L G+Y Y + + + YS D + W Y +SK
Sbjct: 126 IYNFGMVLLNLFIFRELFMGSYNAGYSYICQSVDYS--DNVHEVRIAAALWWY--FVSKG 181
Query: 492 PELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMY 662
E DT+F ILRK+ ++ FLH YHH T+ W K + G +F +N +H +MY
Sbjct: 182 IEYLDTVFFILRKKNNQVSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMY 241
Query: 663 SYYALRAAGFRVSRK--FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IFWS 833
SYY L A G + + + ++T+ Q+ Q V + H FP + W+
Sbjct: 242 SYYGLTAFGPWIQKYLWWKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMHWA 295
Query: 834 SLMY-LSYLVLFCHFFFEAY 890
+ Y +S++ LF +F+ Y
Sbjct: 296 LIAYAISFIFLFLNFYVRTY 315
>ref|XP_003121444.1| PREDICTED: elongation of very long chain fatty acids protein 4-like
[Sus scrofa].
Length = 402
Score = 82.8 bits (203), Expect = 6e-16
Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 16/243 (6%)
Frame = +3
Query: 210 ENWK------KSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFS--IFGAL 365
ENW + +S LY F++ G M R F++R L++++ + + + IF L
Sbjct: 126 ENWPLMHSPWTTLCISTLYLLFVWLGPKWMKDREPFQMRSVLIIYNFGMVLLNLFIFREL 185
Query: 366 RTGAYML-YILMTKGLKYSVCDQGFYNGPVSKFWAYAFVLSKAPELGDTIFIILRKQ--K 536
G+Y Y + + + YS D + W Y +SK E DT+F ILRK+ +
Sbjct: 186 FMGSYNAGYSYICQSVDYS--DNVHEVRIAAALWWY--FVSKGIEYLDTVFFILRKKNNQ 241
Query: 537 LIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK-- 707
+ FLH YHH T+ W K + G +F +N +H +MYSYY L A G + +
Sbjct: 242 VSFLHVYHHCTMFTLWWIGIKWVPGGQAFFGAQLNSFIHVIMYSYYGLTAFGPWIQKYLW 301
Query: 708 FAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPN-IFWSSLMY-LSYLVLFCHFFF 881
+ ++T+ Q+ Q V + H FP + W+ + Y +S++ LF +F+
Sbjct: 302 WKRYLTMLQLVQFHV------TIGHTALSLYTDCPFPKWMHWALIAYAISFIFLFLNFYV 355
Query: 882 EAY 890
Y
Sbjct: 356 RTY 358
>ref|XP_003361081.1| PREDICTED: elongation of very long chain fatty acids protein 5 [Sus
scrofa].
Length = 299
Score = 79.7 bits (195), Expect = 5e-15
Identities = 69/243 (28%), Positives = 111/243 (45%), Gaps = 13/243 (5%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
++ +N+ + + S LY ++ G M R F R LV+++L L + S+ Y
Sbjct: 27 FLLDNYIPTLVCSILYLLIVWLGPKYMKNRQPFSCRGILVVYNLGLTLLSL--------Y 78
Query: 381 MLYILMTKGL---KYSVCDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ 533
M Y L+T G+ KY+ QG +G + W Y F SK E DT F ILRK
Sbjct: 79 MFYELVT-GVWEGKYNFFCQGTRSGGEADMKIIRVLWWYYF--SKLIEFMDTFFFILRKN 135
Query: 534 --KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRA-AGFRVS 701
++ LH YHH T+L W+ + G +F T+N +H +MYSYY L + R
Sbjct: 136 NHQITVLHVYHHATMLNIWWFVMNWVPCGHCYFGATLNSFIHVLMYSYYGLSSIPSMRPY 195
Query: 702 RKFAMFITLSQITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMYLSYLVLFCHFFF 881
+ +IT Q+ Q ++ + W C +++ +S + LF +F+
Sbjct: 196 LWWKKYITQGQLLQFVLTIIQTSFGVIW----PCAFPLGWLYFQIGYMISLIALFTNFYI 251
Query: 882 EAY 890
+ Y
Sbjct: 252 QTY 254
>ref|NP_001161119.1| elongation of very long chain fatty acids protein 1 [Sus scrofa].
Length = 314
Score = 75.9 bits (185), Expect = 8e-14
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 12/234 (5%)
Frame = +3
Query: 225 SFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTK 404
S L+S +Y G R +M R F+LR +V+++ SL S+ Y++Y +
Sbjct: 68 SILLSYVYFVLSLGPR-LMANRKPFQLRGFMVVYNFSLVALSL--------YIVYEFLMS 118
Query: 405 GLKYSV---CDQ-GFYNGPVSKFW---AYAFVLSKAPELGDTIFIILRKQ--KLIFLHWY 557
G + CD F N P + A+ F+ SK EL DT+ ILRK+ ++ FLH +
Sbjct: 119 GWLSTYTWRCDPVDFSNSPEALRMVRVAWLFLFSKFIELMDTVIFILRKKDGQVTFLHVF 178
Query: 558 HHITVLLYSWYSYKDMVAGG-GWFMTM-NYGVHSVMYSYYALRAAGFRVSRKFAMFITLS 731
HH +VL +SW+ + GG G F M N VH VMY YY L A G V++ + +
Sbjct: 179 HH-SVLPWSWWWGVKIAPGGMGSFHAMINSSVHVVMYLYYGLSALG-PVAQPYLWWKKHM 236
Query: 732 QITQMLVGCVVNYLVFHWMQQDQCYSHFPNIFWSSLMY-LSYLVLFCHFFFEAY 890
Q++ +V+ V + C +P I +Y + LF +F+++AY
Sbjct: 237 TAIQLVQFVLVSLHVSQYYFVPACDYQYPVIIHLIWVYGTVFFALFSNFWYQAY 290
>ref|XP_001924876.2| PREDICTED: elongation of very long chain fatty acids protein 2-like
[Sus scrofa].
Length = 511
Score = 72.4 bits (176), Expect = 9e-13
Identities = 70/257 (27%), Positives = 118/257 (45%), Gaps = 17/257 (6%)
Frame = +3
Query: 201 WMQENWKKSFLVSALYAAFIFGGRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAY 380
+M +++ +F+++ LY I+ G M R LR L ++L + + S AY
Sbjct: 245 FMLDSYLPTFVLTVLYLLSIWLGNRFMKSRPALSLRGLLTFYNLGITLLS--------AY 296
Query: 381 MLYILMTKGLK--YSVCDQGFYNGPVSKF------WAYAFVLSKAPELGDTIFIILRKQ- 533
ML L+ + Y++ Q + + W Y F SK E DTIF +LRK+
Sbjct: 297 MLAELILSSWEGGYNLQCQDLTSAGEADIRVARVLWWYYF--SKLIEFLDTIFFVLRKKT 354
Query: 534 -KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MTMNYGVHSVMYSYYALRAAGFRVSRK 707
++ FLH YHH ++ W + G +F T+N +H +MYSYY L F K
Sbjct: 355 SQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPTLNSFIHILMYSYYGLSV--FPSMHK 412
Query: 708 F---AMFITLSQITQMLVGCVVNYLVFHWMQQ--DQCYSHFPNIFWSSLMYLSYLVLFCH 872
+ ++T +Q+ Q ++ + H + C F + + S L+ ++LF +
Sbjct: 413 YLWWKRYLTQAQLVQFVL------TITHTLSAVVRPCGFPFGCLIFQSSYMLTLVILFLN 466
Query: 873 FFFEAYIGK-MRKTTKA 920
F+ + Y K M+K T A
Sbjct: 467 FYVQTYRKKPMKKDTDA 483
>ref|XP_003356572.1| PREDICTED: elongation of very long chain fatty acids protein 2-like
[Sus scrofa].
Length = 242
Score = 60.8 bits (146), Expect = 3e-09
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +3
Query: 462 WAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYHHITVLLYSWYSYKDMVAGGGWF-MT 632
W Y F SK E DTIF +LRK+ ++ FLH YHH ++ W + G +F T
Sbjct: 63 WWYYF--SKLIEFLDTIFFVLRKKTSQITFLHVYHHASMFNIWWCVLNWIPCGQSFFGPT 120
Query: 633 MNYGVHSVMYSYYALRAAGFRVSRKF---AMFITLSQITQMLVGCVVNYLVFHWMQQ--D 797
+N +H +MYSYY L F K+ ++T +Q+ Q ++ + H +
Sbjct: 121 LNSFIHILMYSYYGLSV--FPSMHKYLWWKRYLTQAQLVQFVL------TITHTLSAVVR 172
Query: 798 QCYSHFPNIFWSSLMYLSYLVLFCHFFFEAYIGK-MRKTTKA 920
C F + + S L+ ++LF +F+ + Y K M+K T A
Sbjct: 173 PCGFPFGCLIFQSSYMLTLVILFLNFYVQTYRKKPMKKDTDA 214
>ref|XP_003134038.1| PREDICTED: elongation of very long chain fatty acids protein 7-like
[Sus scrofa].
Length = 240
Score = 51.6 bits (122), Expect = 2e-06
Identities = 41/138 (29%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Frame = +3
Query: 231 LVSALYAAFIFG-GRHVMNKRAKFELRKPLVLWSLSLAVFSIFGALRTGAYMLYILMTKG 407
++ LY F+ G M R FEL+K ++ ++ + +FS++ +++ G
Sbjct: 39 IILGLYVYFVTSLGPKFMENRKPFELKKAMITYNFFIVLFSMYICYE------FVMSGWG 92
Query: 408 LKYSV-CDQGFYNGP------VSKFWAYAFVLSKAPELGDTIFIILRKQ--KLIFLHWYH 560
YS C+ Y+ V W Y F SK EL DTIF +LRK+ ++ FLH +H
Sbjct: 93 TGYSFRCEIVDYSQSPTALRMVRTCWLYYF--SKFIELLDTIFFVLRKKNSQVTFLHVFH 150
Query: 561 HITVLLYSWYSYKDMVAG 614
H T++ ++W+ AG
Sbjct: 151 H-TIMPWTWWFGVKFAAG 167
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 44,059,953
Number of extensions: 1165374
Number of successful extensions: 4332
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4276
Number of HSP's successfully gapped: 9
Length of query: 653
Length of database: 11,343,932
Length adjustment: 105
Effective length of query: 548
Effective length of database: 8,729,747
Effective search space: 4783901356
Effective search space used: 4783901356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007452
(1961 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 256 4e-65
Sscrofa_Chr14 62 1e-06
>Sscrofa_Chr08
|| Length = 148491826
Score = 256 bits (129), Expect = 4e-65
Identities = 132/133 (99%)
Strand = Plus / Minus
Query: 217 ggaagaaatctttcctggtttctgctctgtatgctgcctttatctttggcggtcggcatg 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120119753 ggaagaaatctttcctggtttctgctctgtatgctgcctttatctttggcggtcggcatg 120119694
Query: 277 tcatgaacaagcgcgcgaagtttgagctgaggaagccattagtgctgtggtctctgagcc 336
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 120119693 tcatgaacaagcgcgcgaagtttgaactgaggaagccattagtgctgtggtctctgagcc 120119634
Query: 337 ttgcagtgttcag 349
|||||||||||||
Sbjct: 120119633 ttgcagtgttcag 120119621
Score = 246 bits (124), Expect = 4e-62
Identities = 124/124 (100%)
Strand = Plus / Minus
Query: 95 agagaacacgtagcgactccgaagatcagccccaatgaacatgtcagtgttgactttaca 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219556 agagaacacgtagcgactccgaagatcagccccaatgaacatgtcagtgttgactttaca 120219497
Query: 155 agaatatgaattcgaaaagcagttcaacgagaacgaagccatccaatggatgcaggaaaa 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219496 agaatatgaattcgaaaagcagttcaacgagaacgaagccatccaatggatgcaggaaaa 120219437
Query: 215 ctgg 218
||||
Sbjct: 120219436 ctgg 120219433
Score = 186 bits (94), Expect = 3e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 3 actaagaccgcaaggcattcatttcctcctacggtggatgcggacgccgggaggaggaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120219802 actaagaccgcaaggcattcatttcctcctacggtggatgcggacgccgggaggaggaga 120219743
Query: 63 gtcccagagcgaggagctgagagcccaggcacag 96
||||||||||||||||||||||||||||||||||
Sbjct: 120219742 gtcccagagcgaggagctgagagcccaggcacag 120219709
>Sscrofa_Chr14
|| Length = 153851969
Score = 61.9 bits (31), Expect = 1e-06
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 594 tacaaggacatggtggccgggggaggctggttcatgaccatgaacta 640
|||||||||| |||||| | ||| |||||||||||||||||||||||
Sbjct: 123083108 tacaaggacaaggtggctgcgggcggctggttcatgaccatgaacta 123083154
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 58,585,311
Number of extensions: 429
Number of successful extensions: 429
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 4
Length of query: 1961
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1939
Effective length of database: 2,808,408,574
Effective search space: 5445504224986
Effective search space used: 5445504224986
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)