Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007455
(869 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_787014.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 166 2e-41
Alignment gi|XP_002698354.1| PREDICTED: NADH dehydrogenase (ubiquinone) 1... 128 7e-30
Alignment gi|XP_002703173.1| PREDICTED: NADH dehydrogenase (ubiquinone) 1... 128 7e-30
Alignment gi|XP_002696014.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 122 4e-28
Alignment gi|XP_002702232.1| PREDICTED: NADH dehydrogenase-like [Bos taur... 122 4e-28
Alignment gi|NP_001106776.1| NADH dehydrogenase [ubiquinone] 1 alpha subc... 119 3e-27
>ref|NP_787014.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 [Bos
taurus].
Length = 82
Score = 166 bits (420), Expect = 2e-41
Identities = 76/82 (92%), Positives = 80/82 (97%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
MLRQII QAK+HPSLIPLF+FIGAGGTGAALYVTRLALFNPDV WDRKNNPEPWNKLGPN
Sbjct: 1 MLRQIIGQAKRHPSLIPLFIFIGAGGTGAALYVTRLALFNPDVSWDRKNNPEPWNKLGPN 60
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
DQYKF++VNVDYSKLKKEGPDF
Sbjct: 61 DQYKFYSVNVDYSKLKKEGPDF 82
>ref|XP_002698354.1| PREDICTED: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex
4-like [Bos taurus].
Length = 88
Score = 128 bits (321), Expect = 7e-30
Identities = 65/92 (70%), Positives = 74/92 (80%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
M+ + ++QAKKHPSLIP F+FIGA GTGAALYV LALFNP + NN + WNKLGPN
Sbjct: 1 MICRTVSQAKKHPSLIPFFLFIGAVGTGAALYVLHLALFNPLL-----NNNDSWNKLGPN 55
Query: 317 DQYKFFAVNVDYSKLKKEGPDF*MKCFTIKLL 412
QYKF++VNVDYSKLKKEGPD MK FTIKLL
Sbjct: 56 GQYKFYSVNVDYSKLKKEGPDSYMKRFTIKLL 87
>ref|XP_002703173.1| PREDICTED: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex
4-like [Bos taurus].
Length = 88
Score = 128 bits (321), Expect = 7e-30
Identities = 65/92 (70%), Positives = 74/92 (80%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
M+ + ++QAKKHPSLIP F+FIGA GTGAALYV LALFNP + NN + WNKLGPN
Sbjct: 1 MICRTVSQAKKHPSLIPFFLFIGAVGTGAALYVLHLALFNPLL-----NNNDSWNKLGPN 55
Query: 317 DQYKFFAVNVDYSKLKKEGPDF*MKCFTIKLL 412
QYKF++VNVDYSKLKKEGPD MK FTIKLL
Sbjct: 56 GQYKFYSVNVDYSKLKKEGPDSYMKRFTIKLL 87
>ref|XP_002696014.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 81
Score = 122 bits (306), Expect = 4e-28
Identities = 61/82 (74%), Positives = 68/82 (82%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
ML QII QAKK+ SLIPLF+FIG G T A YVT LALFNP V WDRKNNP+ WN+LGPN
Sbjct: 1 MLHQIIGQAKKYSSLIPLFIFIGPGCTRTASYVTCLALFNPVVSWDRKNNPDLWNQLGPN 60
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
QYKF +V+VDYS+LKKEGPDF
Sbjct: 61 -QYKFNSVSVDYSRLKKEGPDF 81
>ref|XP_002702232.1| PREDICTED: NADH dehydrogenase-like [Bos taurus].
Length = 81
Score = 122 bits (306), Expect = 4e-28
Identities = 61/82 (74%), Positives = 68/82 (82%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
ML QII QAKK+ SLIPLF+FIG G T A YVT LALFNP V WDRKNNP+ WN+LGPN
Sbjct: 1 MLHQIIGQAKKYSSLIPLFIFIGPGCTRTASYVTCLALFNPVVSWDRKNNPDLWNQLGPN 60
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
QYKF +V+VDYS+LKKEGPDF
Sbjct: 61 -QYKFNSVSVDYSRLKKEGPDF 81
>ref|NP_001106776.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
[Bos taurus].
Length = 87
Score = 119 bits (299), Expect = 3e-27
Identities = 53/75 (70%), Positives = 60/75 (80%)
Frame = +2
Query: 158 QAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPNDQYKFFA 337
Q K+HP LIP+ FIG G AALY+ RLAL +PDVCWDRKNNPEPWN+L PNDQYKF A
Sbjct: 13 QIKRHPGLIPMIGFIGLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
Query: 338 VNVDYSKLKKEGPDF 382
V+ DY KLKK+ PDF
Sbjct: 73 VSTDYKKLKKDRPDF 87
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 29,854,022
Number of extensions: 821701
Number of successful extensions: 2183
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2177
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 188
Effective length of database: 14,339,486
Effective search space: 2695823368
Effective search space used: 2695823368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007455
(869 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534877.2| PREDICTED: similar to NADH-ubiquinone oxidoredu... 165 6e-41
Alignment gi|XP_849145.1| PREDICTED: similar to NADH:ubiquinone oxidoredu... 120 2e-27
Alignment gi|XP_546056.2| PREDICTED: similar to phosphodiesterase 8B isof... 52 9e-07
>ref|XP_534877.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase MLRQ subunit
(Complex I-MLRQ) (CI-MLRQ) [Canis familiaris].
Length = 82
Score = 165 bits (417), Expect = 6e-41
Identities = 76/82 (92%), Positives = 79/82 (96%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
MLRQII QAKKHPSLIPLF+FIGAGGTGAALYV RLALFNPDV WDRKNNPEPWNKLGPN
Sbjct: 1 MLRQIIGQAKKHPSLIPLFIFIGAGGTGAALYVLRLALFNPDVSWDRKNNPEPWNKLGPN 60
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
DQYKF++VNVDYSKLKKEGPDF
Sbjct: 61 DQYKFYSVNVDYSKLKKEGPDF 82
>ref|XP_849145.1| PREDICTED: similar to NADH:ubiquinone oxidoreductase MLRQ subunit
homolog [Canis familiaris].
Length = 87
Score = 120 bits (300), Expect = 2e-27
Identities = 53/75 (70%), Positives = 61/75 (81%)
Frame = +2
Query: 158 QAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPNDQYKFFA 337
Q K+HP+LIP+ FIG G AALY+ RLAL +PDVCWDRKNNPEPWN+L PNDQYKF A
Sbjct: 13 QIKRHPALIPMIGFIGLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
Query: 338 VNVDYSKLKKEGPDF 382
V+ DY KLKK+ PDF
Sbjct: 73 VSTDYKKLKKDRPDF 87
>ref|XP_546056.2| PREDICTED: similar to phosphodiesterase 8B isoform 1 [Canis
familiaris].
Length = 836
Score = 51.6 bits (122), Expect = 9e-07
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAAL 229
MLRQ I+QAKKHPSLIPLF+FIGAG +G ++
Sbjct: 1 MLRQTISQAKKHPSLIPLFIFIGAGESGPSM 31
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 30,748,570
Number of extensions: 770922
Number of successful extensions: 2341
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2341
Number of HSP's successfully gapped: 3
Length of query: 289
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 187
Effective length of database: 15,474,232
Effective search space: 2893681384
Effective search space used: 2893681384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007455
(869 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002480.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 153 2e-37
Alignment gi|NP_064527.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 113 2e-25
>ref|NP_002480.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 [Homo
sapiens].
Length = 81
Score = 153 bits (386), Expect = 2e-37
Identities = 72/82 (87%), Positives = 75/82 (91%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
MLRQII QAKKHPSLIPLFVFIG G TGA LY+ RLALFNPDVCWDR NNPEPWNKLGPN
Sbjct: 1 MLRQIIGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWDR-NNPEPWNKLGPN 59
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
DQYKF++VNVDYSKLKKE PDF
Sbjct: 60 DQYKFYSVNVDYSKLKKERPDF 81
>ref|NP_064527.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
[Homo sapiens].
Length = 87
Score = 113 bits (283), Expect = 2e-25
Identities = 51/84 (60%), Positives = 62/84 (73%)
Frame = +2
Query: 131 ATMLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLG 310
A++ + Q K+HP +IP+ I G AALY+ RLAL +PDVCWDRKNNPEPWN+L
Sbjct: 4 ASLGARFYRQIKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLS 63
Query: 311 PNDQYKFFAVNVDYSKLKKEGPDF 382
PNDQYKF AV+ DY KLKK+ PDF
Sbjct: 64 PNDQYKFLAVSTDYKKLKKDRPDF 87
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 29,972,457
Number of extensions: 741983
Number of successful extensions: 2150
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2149
Number of HSP's successfully gapped: 2
Length of query: 289
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 187
Effective length of database: 14,934,836
Effective search space: 2792814332
Effective search space used: 2792814332
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007455
(869 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035016.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomp... 163 2e-40
Alignment gi|NP_001092259.1| NADH dehydrogenase [ubiquinone] 1 alpha subc... 114 7e-26
Alignment gi|NP_001004174.1| normal mucosa of esophagus-specific gene 1 p... 49 5e-06
>ref|NP_035016.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 [Mus
musculus].
Length = 82
Score = 163 bits (412), Expect = 2e-40
Identities = 75/82 (91%), Positives = 79/82 (96%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
MLRQI+ QAKKHPSLIPLFVFIGAGGTGAALYV RLALFNPDV WDRKNNPEPWNKLGPN
Sbjct: 1 MLRQILGQAKKHPSLIPLFVFIGAGGTGAALYVMRLALFNPDVSWDRKNNPEPWNKLGPN 60
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
+QYKF++VNVDYSKLKKEGPDF
Sbjct: 61 EQYKFYSVNVDYSKLKKEGPDF 82
>ref|NP_001092259.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2
[Mus musculus].
Length = 87
Score = 114 bits (286), Expect = 7e-26
Identities = 51/75 (68%), Positives = 58/75 (77%)
Frame = +2
Query: 158 QAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPNDQYKFFA 337
Q K+HP LIP+ FI G A LY+ RLAL +PDVCWDRKNNPEPWN+L PNDQYKF A
Sbjct: 13 QIKRHPGLIPMIGFICLGMGSAGLYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLA 72
Query: 338 VNVDYSKLKKEGPDF 382
V+ DY KLKK+ PDF
Sbjct: 73 VSTDYKKLKKDRPDF 87
>ref|NP_001004174.1| normal mucosa of esophagus-specific gene 1 protein [Mus musculus].
Length = 83
Score = 48.9 bits (115), Expect = 5e-06
Identities = 25/67 (37%), Positives = 33/67 (49%)
Frame = +2
Query: 167 KHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPNDQYKFFAVNV 346
K+ LIPL FI TGA + AL DV DRK NPEPW + P K +N
Sbjct: 9 KNKELIPLAFFISVAATGATSFAL-YALKKTDVVIDRKRNPEPWEMVDPTQPQKLITINQ 67
Query: 347 DYSKLKK 367
+ +++
Sbjct: 68 QWKPVEE 74
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 25,445,229
Number of extensions: 628062
Number of successful extensions: 1806
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1805
Number of HSP's successfully gapped: 3
Length of query: 289
Length of database: 15,617,559
Length adjustment: 100
Effective length of query: 189
Effective length of database: 12,613,959
Effective search space: 2384038251
Effective search space used: 2384038251
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007455
(869 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090937.1| NADH dehydrogenase [ubiquinone] 1 alpha subc... 176 1e-44
Alignment gi|XP_003135118.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 157 7e-39
Alignment gi|XP_003355532.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1... 120 1e-27
Alignment gi|NP_001192306.1| NADH dehydrogenase [ubiquinone] 1 alpha subc... 120 1e-27
Alignment gi|XP_001925712.1| PREDICTED: normal mucosa of esophagus-specif... 49 4e-06
Alignment gi|XP_003353424.1| PREDICTED: normal mucosa of esophagus-specif... 49 4e-06
>ref|NP_001090937.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4 [Sus
scrofa].
Length = 82
Score = 176 bits (447), Expect = 1e-44
Identities = 82/82 (100%), Positives = 82/82 (100%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN
Sbjct: 1 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 60
Query: 317 DQYKFFAVNVDYSKLKKEGPDF 382
DQYKFFAVNVDYSKLKKEGPDF
Sbjct: 61 DQYKFFAVNVDYSKLKKEGPDF 82
>ref|XP_003135118.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 4-like [Sus scrofa].
Length = 101
Score = 157 bits (397), Expect = 7e-39
Identities = 81/106 (76%), Positives = 84/106 (79%)
Frame = +2
Query: 137 MLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPN 316
MLRQII QA+KHPSLIP + AALYVT LALFNPDV WDRK NPEPW K GP+
Sbjct: 1 MLRQIIGQAEKHPSLIPPLCM-----SRAALYVTCLALFNPDVSWDRKTNPEPWKKPGPH 55
Query: 317 DQYKFFAVNVDYSKLKKEGPDF*MKCFTIKLLRMKVFQKPSAQFST 454
D YKFFA VDYSKLKKEGPDF KCFTIKLLRMKVF KPSAQFST
Sbjct: 56 DPYKFFARKVDYSKLKKEGPDFERKCFTIKLLRMKVFLKPSAQFST 101
>ref|XP_003355532.1| PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 4-like 2-like [Sus scrofa].
Length = 87
Score = 120 bits (300), Expect = 1e-27
Identities = 54/83 (65%), Positives = 63/83 (75%)
Frame = +2
Query: 134 TMLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGP 313
T+ + Q K+HP LIP+ FIG G AALY+ RLAL +PDVCWDRKNNPEPWN+L P
Sbjct: 5 TLGARFYRQIKRHPGLIPMIGFIGLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSP 64
Query: 314 NDQYKFFAVNVDYSKLKKEGPDF 382
NDQYKF AV+ DY KLKK+ PDF
Sbjct: 65 NDQYKFLAVSTDYKKLKKDRPDF 87
>ref|NP_001192306.1| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like
2-like [Sus scrofa].
Length = 87
Score = 120 bits (300), Expect = 1e-27
Identities = 54/83 (65%), Positives = 63/83 (75%)
Frame = +2
Query: 134 TMLRQIITQAKKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGP 313
T+ + Q K+HP LIP+ FIG G AALY+ RLAL +PDVCWDRKNNPEPWN+L P
Sbjct: 5 TLGARFYRQIKRHPGLIPMIGFIGLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSP 64
Query: 314 NDQYKFFAVNVDYSKLKKEGPDF 382
NDQYKF AV+ DY KLKK+ PDF
Sbjct: 65 NDQYKFLAVSTDYKKLKKDRPDF 87
>ref|XP_001925712.1| PREDICTED: normal mucosa of esophagus-specific gene 1 protein-like
isoform 1 [Sus scrofa].
Length = 83
Score = 48.9 bits (115), Expect = 4e-06
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +2
Query: 164 KKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPNDQYKFFAVN 343
+K LIPL F+ A +GA+ + +L DV DRK NPEPW + PN K +N
Sbjct: 8 RKKKELIPLVFFMTAAASGASAFAI-YSLGKTDVIIDRKRNPEPWETVDPNVPRKLITIN 66
Query: 344 VDYSKLKK 367
++ +++
Sbjct: 67 QEWKPIEE 74
>ref|XP_003353424.1| PREDICTED: normal mucosa of esophagus-specific gene 1 protein-like
isoform 2 [Sus scrofa].
Length = 83
Score = 48.9 bits (115), Expect = 4e-06
Identities = 24/68 (35%), Positives = 37/68 (54%)
Frame = +2
Query: 164 KKHPSLIPLFVFIGAGGTGAALYVTRLALFNPDVCWDRKNNPEPWNKLGPNDQYKFFAVN 343
+K LIPL F+ A +GA+ + +L DV DRK NPEPW + PN K +N
Sbjct: 8 RKKKELIPLVFFMTAAASGASAFAI-YSLGKTDVIIDRKRNPEPWETVDPNVPRKLITIN 66
Query: 344 VDYSKLKK 367
++ +++
Sbjct: 67 QEWKPIEE 74
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 19,997,097
Number of extensions: 651773
Number of successful extensions: 1404
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1403
Number of HSP's successfully gapped: 6
Length of query: 289
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,904,026
Effective search space: 1700668966
Effective search space used: 1700668966
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007455
(869 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 567 e-159
Sscrofa_Chr02 515 e-143
Sscrofa_Chr03 484 e-134
Sscrofa_Chr09 430 e-118
Sscrofa_ChrX 414 e-113
Sscrofa_Chr16 285 2e-74
>Sscrofa_Chr13
|| Length = 218635234
Score = 567 bits (286), Expect = e-159
Identities = 427/474 (90%), Gaps = 10/474 (2%)
Strand = Plus / Minus
Query: 70 ctgcttagtccccgaccttgcaggttaattttctttgccctctaggctc--gaggcctct 127
|||||| ||||| | |||||||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 33746265 ctgcttcgtccctggccttgcaggttaatcttctttgccatctaggctcatgaggcctct 33746206
Query: 128 gtcgctaccatgcttcgccagatcatcacgcaggccaagaagcatcctagcttgatcccc 187
|| ||||||||||| || ||||| ||| ||||||||||||||||||||||| |||||
Sbjct: 33746205 gttgctaccatgctccgacagattctcaatcaggccaagaagcatcctagcttaatccct 33746146
Query: 188 ctctttgtatttattggtgctggaggtactggagcagcactgtatgtcacacgcctggca 247
|||||||||||||||||||| |||||| ||||| ||| |||||||||||| ||||||||
Sbjct: 33746145 ctctttgtatttattggtgcaggaggttctggaacagtactgtatgtcacgtgcctggca 33746086
Query: 248 ttgttcaatccagatgtctgttgggacaggaagaataacccagaaccctggaataaactg 307
|||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||
Sbjct: 33746085 ttgttcaatccagatgtcagttgggacaggaagaataatccagaaccgtggagtaaactc 33746026
Query: 308 ggtcccaatgatcaatacaagttctttgcggtgaatgtagattacagcaaactgaagaaa 367
||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||
Sbjct: 33746025 ggtcctaatgatcaatacaagttctttgcagtgaatgtagattacagcacaatgaagaaa 33745966
Query: 368 gaaggtccagacttctaaatgaaatgtttcactataaagctgcttagaatgaaggtcttc 427
|||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 33745965 gaaggtgcagatttctaaatgaaatgtttcactataaagctacttagaatgaaggtcttc 33745906
Query: 428 cagaagccatccgcacaattttccacttaaccgggaaatatttcccctctaaatgcacga 487
|||||| ||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 33745905 tagaagc--------caattttccacttaaccaggaaatatttcccctctaaatgcatga 33745854
Query: 488 aatcatgttgtattgtattggggtttacactgattaataaataatctgaaactt 541
||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 33745853 aatcacgttgtattgtgttggggtttacactgattaataaataatctgaaactt 33745800
>Sscrofa_Chr02
|| Length = 162569375
Score = 515 bits (260), Expect = e-143
Identities = 424/478 (88%), Gaps = 3/478 (0%)
Strand = Plus / Plus
Query: 60 tgggcagatcctgcttagtccccgaccttgcaggttaattttctttgccctctaggctcg 119
|||||||| ||||||||||| | ||||| | ||||| |||||| | ||| |||||
Sbjct: 124473101 tgggcagacactgcttagtccaaggccttgtacattaatcttcttttcagtctgggctca 124473160
Query: 120 aggcctctgtcgctaccatgcttcgccagatcatcacgcaggccaagaagcatcctagct 179
|||||||||| |||||||| || | ||||||||||| ||||| ||||||||||||||||
Sbjct: 124473161 aggcctctgttgctaccatactccaccagatcatcagtcaggctaagaagcatcctagct 124473220
Query: 180 tgatccccctctttgtatttattggtgctggaggtactggagcagcactgtatgtcacac 239
||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 124473221 tgatccccctcttcatatttattggtgcaggaggtactgcagcagcactgtatgtcatgg 124473280
Query: 240 gcctggcattgttcaatccagatgtctgttgggacaggaagaataacccagaaccctgga 299
|||| ||| |||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct: 124473281 gcctagcactgttcaatccagatatcagttgggacaggaagaataacccagaaccctaga 124473340
Query: 300 ataaactgggtcccaatgatcaatacaagttctttgcggtgaatgtagattacagcaaac 359
||||||||||| ||| |||||||||||||||||| || ||| ||| ||||||||||||||
Sbjct: 124473341 ataaactgggtgccagtgatcaatacaagttcttagcagtgcatggagattacagcaaac 124473400
Query: 360 tgaagaaagaaggtccagacttctaaatgaaatgtttcactataaagctgcttagaatga 419
|||||||||||| || ||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct: 124473401 tgaagaaagaagatctggacttctaaatgaaatgtttccctatagagctgcttggaatga 124473460
Query: 420 aggtcttccagaagccatccgcacaattttccacttaaccgggaaatatttcccctctaa 479
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 124473461 aggtcttccagaagccatctgcacaattttccacttaaccaggaaatatttcccctctaa 124473520
Query: 480 atgcacgaaatcatgttg---tattgtattggggtttacactgattaataaataatct 534
|||||| ||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 124473521 atgcacaaaatcatgttggtatattgtgttgggtgttacactgattaataaataatct 124473578
Score = 430 bits (217), Expect = e-118
Identities = 312/343 (90%), Gaps = 3/343 (0%)
Strand = Plus / Minus
Query: 195 tatttattggtgctggaggtactggagcagcactgtatgtcacacgcctggcattgttca 254
||||||||||||| |||||||||| ||||||||||||||||| |||| ||| ||||||
Sbjct: 124346414 tatttattggtgcaggaggtactgcagcagcactgtatgtcatgggcctagcactgttca 124346355
Query: 255 atccagatgtctgttgggacaggaagaataacccagaaccctggaataaactgggtccca 314
|||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 124346354 atccagatatcagttgggacaggaagaataacccagaaccctagaataaactgggtgcca 124346295
Query: 315 atgatcaatacaagttctttgcggtgaatgtagattacagcaaactgaagaaagaaggtc 374
|||||||||||||||||| || ||| ||| |||||||||||||||||||||||||| ||
Sbjct: 124346294 gtgatcaatacaagttcttagcagtgcatggagattacagcaaactgaagaaagaagatc 124346235
Query: 375 cagacttctaaatgaaatgtttcactataaagctgcttagaatgaaggtcttccagaagc 434
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct: 124346234 tggacttctaaatgaaatgtttccctatagagctgcttggaatgaaggtcttccagaagc 124346175
Query: 435 catccgcacaattttccacttaaccgggaaatatttcccctctaaatgcacgaaatcatg 494
|||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 124346174 catctgcacaattttccacttaaccaggaaatatttcccctctaaatgcacaaaatcatg 124346115
Query: 495 ttg---tattgtattggggtttacactgattaataaataatct 534
||| |||||| ||||| |||||||||||||||||||||||
Sbjct: 124346114 ttggtatattgtgttgggtgttacactgattaataaataatct 124346072
>Sscrofa_Chr03
|| Length = 144787322
Score = 484 bits (244), Expect = e-134
Identities = 435/497 (87%), Gaps = 5/497 (1%)
Strand = Plus / Minus
Query: 50 gctcctgatctgggcagatcctgcttagtccccgaccttgcaggttaattttctttgccc 109
|||||||||||| |||| |||||||||||| | | |||||||||||| |||||| ||
Sbjct: 76290420 gctcctgatctgcacagacgctgcttagtcccaggctttgcaggttaatcttcttttcca 76290361
Query: 110 tctaggctcgaggcctctgtcgctaccatgcttcgccagatcatcacgcaggccaagaag 169
||||||||| ||||||||||| |||||||| | |||||||||||| ||||||||||||
Sbjct: 76290360 tctaggctcaaggcctctgtcactaccatgttctgccagatcatcagtcaggccaagaag 76290301
Query: 170 catcctagcttgatccccctctttgtatttattggtgctggaggtactggagcagcactg 229
| |||||||||| ||| ||| ||||| || |||||| ||| ||||||||||| || |
Sbjct: 76290300 cctcctagcttgccccctgtctctgtatctactggtgcgggaagtactggagcaacatgg 76290241
Query: 230 tatgtcacacgcctggcattgttcaatccagatgtctgttgggacaggaagaataaccca 289
||||||| |||||||| ||||||||||||||||| | ||||| |||||||||||||||
Sbjct: 76290240 tatgtcatgtgcctggcaatgttcaatccagatgtcagctgggaaaggaagaataaccca 76290181
Query: 290 gaaccctggaataaactgggtcccaatgat--caatacaagttctttgcggtgaatgtag 347
|| |||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 76290180 gagccctggaataaattgggtcccaatgatcacaatacaagttctttgcagtgaatgtag 76290121
Query: 348 attacagcaaactgaagaaagaaggtccagacttctaaatgaaatgtttcactataaagc 407
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 76290120 attacagcaaactgaagaaagaaggtccagacttctaaatgaaacgtttcactataaagc 76290061
Query: 408 tgcttagaatgaaggtcttccagaagccatccgcac---aattttccacttaaccgggaa 464
|||||||||||||||||||||| ||||||||| ||| ||| || ||||||| | ||||
Sbjct: 76290060 tgcttagaatgaaggtcttccaaaagccatccacacactaatatttcacttaatcaggaa 76290001
Query: 465 atatttcccctctaaatgcacgaaatcatgttgtattgtattggggtttacactgattaa 524
||||||||||| ||||||||| |||||||| |||||||| |||||| ||| |||| |||
Sbjct: 76290000 atatttcccctgtaaatgcacaaaatcatgctgtattgtgttggggcttatgctgactaa 76289941
Query: 525 taaataatctgaaactt 541
||||||| || ||||||
Sbjct: 76289940 taaataacctaaaactt 76289924
>Sscrofa_Chr09
|| Length = 153670197
Score = 430 bits (217), Expect = e-118
Identities = 217/217 (100%)
Strand = Plus / Minus
Query: 325 caagttctttgcggtgaatgtagattacagcaaactgaagaaagaaggtccagacttcta 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88556197 caagttctttgcggtgaatgtagattacagcaaactgaagaaagaaggtccagacttcta 88556138
Query: 385 aatgaaatgtttcactataaagctgcttagaatgaaggtcttccagaagccatccgcaca 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88556137 aatgaaatgtttcactataaagctgcttagaatgaaggtcttccagaagccatccgcaca 88556078
Query: 445 attttccacttaaccgggaaatatttcccctctaaatgcacgaaatcatgttgtattgta 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88556077 attttccacttaaccgggaaatatttcccctctaaatgcacgaaatcatgttgtattgta 88556018
Query: 505 ttggggtttacactgattaataaataatctgaaactt 541
|||||||||||||||||||||||||||||||||||||
Sbjct: 88556017 ttggggtttacactgattaataaataatctgaaactt 88555981
Score = 325 bits (164), Expect = 2e-86
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 7 aggggtccttcagggaggaggtcctgggtgactttggacgtccgctcctgatctgggcag 66
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 88563041 aggggtccttcaggtaggaggtcctgggtgactttggacgtccgctcctgatctgcgcag 88562982
Query: 67 atcctgcttagtccccgaccttgcaggttaattttctttgccctctaggctcgaggcctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88562981 atcctgcttagtccccgaccttgcaggttaattttctttgccctctaggctcgaggcctc 88562922
Query: 127 tgtcgctaccatgcttcgccagatcatcacgcaggccaagaagcatcctagc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88562921 tgtcgctaccatgcttcgccagatcatcacgcaggccaagaagcatcctagc 88562870
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 179 ttgatccccctctttgtatttattggtgctggaggtactggagcagcactgtatgtcaca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88561780 ttgatccccctctttgtatttattggtgctggaggtactggagcagcactgtatgtcaca 88561721
Query: 239 cgcctggcattgttcaatccagatgtctg 267
|||||||||||||||||||||||||||||
Sbjct: 88561720 cgcctggcattgttcaatccagatgtctg 88561692
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Minus
Query: 267 gttgggacaggaagaataacccagaaccctggaataaactgggtcccaatgatcaataca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88560987 gttgggacaggaagaataacccagaaccctggaataaactgggtcccaatgatcaataca 88560928
Query: 327 ag 328
||
Sbjct: 88560927 ag 88560926
>Sscrofa_ChrX
|| Length = 144288218
Score = 414 bits (209), Expect = e-113
Identities = 441/521 (84%), Gaps = 23/521 (4%)
Strand = Plus / Plus
Query: 22 aggaggtcctgggtgactttggacgtccgctcctgatctgggcagatcctgcttagtccc 81
|||||||||||||||||||||| ||| ||||| | ||||| ||||||||||||
Sbjct: 46709144 aggaggtcctgggtgactttgggagtc------tgatcagtgcagacactgcttagtccc 46709197
Query: 82 cgaccttgcaggttaattttctttgccctctaggctcgaggcctctgtcgctaccatgct 141
| |||||||||||||| |||||| | |||||||||||||| |||||| ||||||||||
Sbjct: 46709198 aggccttgcaggttaatcttctttttcgtctaggctcgaggcgtctgtccctaccatgct 46709257
Query: 142 tcgccagatcatcacgcaggccaagaagcatcctagcttgatccccc-tctttgtattta 200
||||||||||| |||||| |||||||||||||||| ||||||| ||| ||||| |
Sbjct: 46709258 ccgccagatcataggtcaggccgagaagcatcctagcttaatcccccctctctgtatgt- 46709316
Query: 201 ttggtgctggaggtactggagcagcactgtatgtcacacgcctggcattgttcaatccag 260
| | |||||| |||||||||| || ||||||||||||||||||
Sbjct: 46709317 ---------------cacgtgcagcattgtatgtcacctgcttggcattgttcaatccag 46709361
Query: 261 atgtctgttgggacaggaagaataacccagaaccctggaataaactgggtcccaatgatc 320
||||| ||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct: 46709362 atgtcagttgggacaggaagactaacccagaaccctggaagaaaccgggtccccatgatc 46709421
Query: 321 aatacaagttctttgcggtgaatgtagattacagcaaactgaagaaagaaggtccagact 380
||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||||
Sbjct: 46709422 catacaagttctttgcaaggaaggtagattacagcaaactgaagaaagaaggccctgact 46709481
Query: 381 tctaaatgaaatgtttcactataaagctgcttagaatgaaggtcttccagaagccatccg 440
|| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 46709482 tcgaaaggaaatgtttcactataaagctgcttagaatgaaggtcttcctgaagccatctg 46709541
Query: 441 cacaattttccacttaaccgggaaatatttcccctctaaatgcacgaaatcatgttgtat 500
|||| ||||||||||| || | |||||||||||||||||||||| ||||| |||||||||
Sbjct: 46709542 cacagttttccacttagccagaaaatatttcccctctaaatgcatgaaattatgttgtat 46709601
Query: 501 tgtattggggtttacactgattaataaataatctgaaactt 541
||| |||| |||||| ||||| ||||||||| |||||||||
Sbjct: 46709602 tgtgttggtgtttacgctgatgaataaataaactgaaactt 46709642
>Sscrofa_Chr16
|| Length = 86898991
Score = 285 bits (144), Expect = 2e-74
Identities = 319/374 (85%), Gaps = 10/374 (2%)
Strand = Plus / Minus
Query: 165 agaagcatcctagcttgatccccctctttgtatttattggtgctggaggtactggagcag 224
|||||| ||||||||||||| |||||||||||| ||| ||| | ||| |||||||||
Sbjct: 54963005 agaagcgtcctagcttgatctgcctctttgtattcatt--tgcaaggggtcctggagcag 54962948
Query: 225 cactgtatgtcacacgcctggcattgttcaatccagatgtctgttgggacaggaagaata 284
||| | ||||| ||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct: 54962947 caccgcatgtcttgtgcctggcatggttcaatccagatgtcatttgggacagaaagaata 54962888
Query: 285 acccagaaccctggaataaactgggtcccaatgatcaatacaagttct--ttgcggtgaa 342
||||||||||||||| |||||||||||| | ||||||| || ||| ||| ||||
Sbjct: 54962887 acccagaaccctggagcaaactgggtccccacagtcaatacgagatctacttg---tgaa 54962831
Query: 343 tgtagattacagcaaactgaagaaagaaggtccagacttctaaatgaaatgtttcactat 402
|||| || |||||||| ||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct: 54962830 tgtaaatgacagcaaagtgaagaaagaaggtccagacttcgaaatgaagtgttttgctat 54962771
Query: 403 aaagctgcttagaatgaaggtcttccagaagccatccgcacaattttccacttaaccggg 462
|||||||||||||||||||||||| ||||||||||||| ||| || |||||||||| ||
Sbjct: 54962770 aaagctgcttagaatgaaggtctttcagaagccatccgtgcaacttcccacttaaccagg 54962711
Query: 463 aaatatttcccctctaaatgcacgaaatcatgt---tgtattgtattggggtttacactg 519
|||||| ||||||||||||||| |||||||||| ||| |||| |||||||| |||||
Sbjct: 54962710 aaatatgtcccctctaaatgcaggaaatcatgttggtgtgttgtgctggggtttccactg 54962651
Query: 520 attaataaataatc 533
||||||||||||||
Sbjct: 54962650 attaataaataatc 54962637
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,439,360
Number of extensions: 395
Number of successful extensions: 395
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 387
Number of HSP's successfully gapped: 13
Length of query: 869
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 848
Effective length of database: 2,808,413,156
Effective search space: 2381534356288
Effective search space used: 2381534356288
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)