Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007460
(1618 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777125.1| endoplasmin precursor [Bos taurus]. 774 0.0
Alignment gi|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus]. 317 1e-86
Alignment gi|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus]. 315 6e-86
Alignment gi|NP_001033764.1| heat shock protein 75 kDa, mitochondrial pre... 213 5e-55
>ref|NP_777125.1| endoplasmin precursor [Bos taurus].
Length = 804
Score = 774 bits (1998), Expect(2) = 0.0
Identities = 398/450 (88%), Positives = 400/450 (88%)
Frame = +3
Query: 132 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 311
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 312 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 491
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 492 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 671
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 672 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 851
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 852 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXX 1031
LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEP
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPAEEEEAAK 300
Query: 1032 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 1211
P WDWELMNDIKPIWQRPSKEVE+DEYKAFYK
Sbjct: 301 EDKEESDDEAAVEEEEDEKKPKTKKVEKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYK 360
Query: 1212 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 1391
SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD
Sbjct: 361 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 420
Query: 1392 DFHDMMPQYLNFVKGVVDSDDLPLNVSRET 1481
DFHDMMP+YLNFVKGVVDSDDLPLNVSRET
Sbjct: 421 DFHDMMPKYLNFVKGVVDSDDLPLNVSRET 450
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1
Query: 1513 KKACP*TLGMIKKIAEEKYNDTFLEEFGSNITLGV 1617
KK TL MIKKIA+EKYNDTF +EFG+NI LGV
Sbjct: 462 KKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGV 496
>ref|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].
Length = 724
Score = 317 bits (813), Expect = 1e-86
Identities = 180/398 (45%), Positives = 245/398 (61%), Gaps = 13/398 (3%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +LV NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGR 860
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GR
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGR 177
Query: 861 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK------------TETVEE 1004
GT + L LKE+ ++YLE +K +VKK+SQFI +PI ++ K E E+
Sbjct: 178 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 237
Query: 1005 PMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVE 1184
D E +N KPIW R ++
Sbjct: 238 EEEDKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDIT 297
Query: 1185 DDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKL 1364
+EY FYKS + + +D +A HF+ EG++ F+++LF+P AP LF+ KK + IKL
Sbjct: 298 QEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE--NKKKKNNIKL 355
Query: 1365 YVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
YVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 356 YVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISRE 393
>ref|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].
Length = 733
Score = 315 bits (808), Expect = 6e-86
Identities = 176/395 (44%), Positives = 240/395 (60%), Gaps = 16/395 (4%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 189
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK----------------TETVEEPMX 1013
LKE+ ++YLE IK +VKK+SQFI +PI ++ K E +E
Sbjct: 190 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEE 249
Query: 1014 XXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDE 1193
D E +N KPIW R ++ ++E
Sbjct: 250 KESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEE 309
Query: 1194 YKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVR 1373
Y FYKS + + +D +A HF+ EG++ F+++LFVP AP LF+ KK + IKLYVR
Sbjct: 310 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE--NRKKKNNIKLYVR 367
Query: 1374 RVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
RVFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 368 RVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 402
>ref|NP_001033764.1| heat shock protein 75 kDa, mitochondrial precursor [Bos taurus].
Length = 703
Score = 213 bits (541), Expect = 5e-55
Identities = 128/391 (32%), Positives = 213/391 (54%), Gaps = 5/391 (1%)
Frame = +3
Query: 321 SQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDE 500
S + ++ + K FQAE +++ ++ SLY KE+F+RELISNASDAL+K+R +++
Sbjct: 75 SSLEAVQGSATKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSEG 134
Query: 501 NALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQE 680
AL ++ + ++ D ++ + + DTGVGM+REELV NLGTIA+SG+ FL+ + Q
Sbjct: 135 QAL---PDMEIHLQTDADRGTITIQDTGVGMSREELVSNLGTIARSGSKAFLDAL---QN 188
Query: 681 DGQSTSELIGQFGVGFYSAFLVADKVIVTSK--HNNDTQHIWESDSNEFSVIADPRGNTL 854
++ S++IGQFGVGFYSAF+VAD+V V S+ + W SD + +A+ G +
Sbjct: 189 QAEAGSKIIGQFGVGFYSAFMVADRVEVYSRSVDAGSLGYRWLSDGSGVFEVAEASG--V 246
Query: 855 GRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXXX 1034
GT I + LK ++ ++ ++++V KYS F++FP+Y+ + T
Sbjct: 247 RTGTKIIIHLKADSREFASEARVRDVVTKYSNFVSFPLYLNGRRMNT------------- 293
Query: 1035 XXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYKS 1214
++ IW K+V + +++ FY+
Sbjct: 294 -------------------------------------LQAIWMMDPKDVGEGQHEEFYRY 316
Query: 1215 FSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFD---EYGSKKSDYIKLYVRRVFI 1385
++ D P +H+ + ++ +SI +VP + P +FD E GS + LY R+V I
Sbjct: 317 VAQAHDRPRYTLHYRTDAPLSIRSIFYVPDAKP-SMFDVSRELGSS----VSLYSRKVLI 371
Query: 1386 TDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
+++P +L FV+GVVDS+D+PLN+SRE
Sbjct: 372 QTKATNILPTWLRFVRGVVDSEDIPLNLSRE 402
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,829,668
Number of extensions: 1398299
Number of successful extensions: 5714
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5588
Number of HSP's successfully gapped: 8
Length of query: 539
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 432
Effective length of database: 14,140,958
Effective search space: 6108893856
Effective search space used: 6108893856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007460
(1618 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003327.1| endoplasmin precursor [Canis lupus familiari... 778 0.0
Alignment gi|XP_532154.2| PREDICTED: similar to heat shock protein 1, bet... 317 2e-86
Alignment gi|XP_848783.1| PREDICTED: similar to heat shock protein 1, alp... 314 2e-85
Alignment gi|XP_866000.1| PREDICTED: similar to heat shock protein 1, bet... 228 1e-59
Alignment gi|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90... 216 5e-56
Alignment gi|XP_854921.1| PREDICTED: similar to heat shock protein 1, bet... 206 4e-53
Alignment gi|XP_868588.1| PREDICTED: similar to heat shock protein 1, alp... 204 3e-52
Alignment gi|XP_537557.2| PREDICTED: similar to heat shock protein 1, alp... 204 3e-52
Alignment gi|XP_547152.2| PREDICTED: similar to TNF receptor-associated p... 194 3e-49
Alignment gi|XP_866031.1| PREDICTED: similar to heat shock protein 1, bet... 173 4e-43
>ref|NP_001003327.1| endoplasmin precursor [Canis lupus familiaris].
Length = 804
Score = 778 bits (2008), Expect(2) = 0.0
Identities = 400/450 (88%), Positives = 401/450 (89%)
Frame = +3
Query: 132 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 311
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 312 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 491
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 492 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 671
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 672 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 851
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 852 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXX 1031
LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPM
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAK 300
Query: 1032 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 1211
P WDWELMNDIKPIWQRPSKEVEDDEYKAFYK
Sbjct: 301 EEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 360
Query: 1212 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 1391
SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD
Sbjct: 361 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 420
Query: 1392 DFHDMMPQYLNFVKGVVDSDDLPLNVSRET 1481
DFHDMMP+YLNFVKGVVDSDDLPLNVSRET
Sbjct: 421 DFHDMMPKYLNFVKGVVDSDDLPLNVSRET 450
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1
Query: 1513 KKACP*TLGMIKKIAEEKYNDTFLEEFGSNITLGV 1617
KK TL MIKKIA+EKYNDTF +EFG+NI LGV
Sbjct: 462 KKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGV 496
>ref|XP_532154.2| PREDICTED: similar to heat shock protein 1, beta isoform 1 [Canis
familiaris].
Length = 636
Score = 317 bits (812), Expect = 2e-86
Identities = 179/398 (44%), Positives = 245/398 (61%), Gaps = 13/398 (3%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGR 860
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GR
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGR 177
Query: 861 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK------------TETVEE 1004
GT + L LKE+ ++YLE +K +VKK+SQFI +PI ++ K E E+
Sbjct: 178 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 237
Query: 1005 PMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVE 1184
D E +N KPIW R ++
Sbjct: 238 EEEDKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDIT 297
Query: 1185 DDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKL 1364
+EY FYKS + + +D +A HF+ EG++ F+++LF+P AP LF+ KK + IKL
Sbjct: 298 QEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE--NKKKKNNIKL 355
Query: 1365 YVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
YVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 356 YVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISRE 393
>ref|XP_848783.1| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 483
Score = 314 bits (804), Expect = 2e-85
Identities = 176/395 (44%), Positives = 238/395 (60%), Gaps = 16/395 (4%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFM----EALQAGADIS- 129
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 189
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK----------------TETVEEPMX 1013
LKE+ ++YLE IK +VKK+SQFI +PI ++ K E +E
Sbjct: 190 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEEKEEEKEKEE 249
Query: 1014 XXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDE 1193
D E +N KPIW R + ++E
Sbjct: 250 KESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDNITNEE 309
Query: 1194 YKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVR 1373
Y FYKS + + +D +A HF+ EG++ F+ +LFVP AP LF+ KK + IKLYVR
Sbjct: 310 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRDLLFVPRRAPFDLFE--NRKKKNNIKLYVR 367
Query: 1374 RVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
RVFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 368 RVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 402
>ref|XP_866000.1| PREDICTED: similar to heat shock protein 1, beta isoform 3 [Canis
familiaris].
Length = 324
Score = 228 bits (582), Expect = 1e-59
Identities = 136/320 (42%), Positives = 185/320 (57%), Gaps = 13/320 (4%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGR 860
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GR
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGR 177
Query: 861 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK------------TETVEE 1004
GT + L LKE+ ++YLE +K +VKK+SQFI +PI ++ K E E+
Sbjct: 178 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 237
Query: 1005 PMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVE 1184
D E +N KPIW R ++
Sbjct: 238 EEEDKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDIT 297
Query: 1185 DDEYKAFYKSFSKESDDPMA 1244
+EY FYKS + + +D +A
Sbjct: 298 QEEYGEFYKSLTNDWEDHLA 317
>ref|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 3 [Canis familiaris].
Length = 543
Score = 216 bits (550), Expect = 5e-56
Identities = 115/220 (52%), Positives = 152/220 (69%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFM----EALQAGADIS- 129
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 189
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVE 1001
LKE+ ++YLE IK +VKK+SQFI +PI ++ K E
Sbjct: 190 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE 229
>ref|XP_854921.1| PREDICTED: similar to heat shock protein 1, beta [Canis familiaris].
Length = 291
Score = 206 bits (525), Expect = 4e-53
Identities = 112/260 (43%), Positives = 157/260 (60%), Gaps = 1/260 (0%)
Frame = +3
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSN-EFSVIADPRGNTLGRGTTITL 878
+IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GRGT + L
Sbjct: 1 MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGRGTKVIL 59
Query: 879 VLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXXXXXXXXXXX 1058
LKE+ ++YLE +K +VKK+SQFI +PI ++ K E
Sbjct: 60 HLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKE------------------- 100
Query: 1059 XXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDP 1238
D E +N KPIW R ++ +EY FYKS + + +D
Sbjct: 101 -ISDDEWEGQEKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDH 159
Query: 1239 MAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPQY 1418
+A HF+ EG++ F+++LF+P AP LF+ KK + IKLYVRRVFI D +++P+Y
Sbjct: 160 LAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYVRRVFIMDSCDELIPEY 217
Query: 1419 LNFVKGVVDSDDLPLNVSRE 1478
LNF++GVVDS+DLPLN+SRE
Sbjct: 218 LNFIRGVVDSEDLPLNISRE 237
>ref|XP_868588.1| PREDICTED: similar to heat shock protein 1, alpha isoform 3 [Canis
familiaris].
Length = 607
Score = 204 bits (518), Expect = 3e-52
Identities = 115/286 (40%), Positives = 161/286 (56%), Gaps = 16/286 (5%)
Frame = +3
Query: 669 EAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGN 848
EA + G S +IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G
Sbjct: 2 EALQAGADIS-MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 849 TLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT------------- 989
+GRGT + L LKE+ ++YLE IK +VKK+SQFI +PI ++ K
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 990 ---ETVEEPMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIW 1160
E +E D E +N KPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1161 QRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGS 1340
R ++ ++EY FYKS + + +D +A HF+ EG++ F+++LFVP AP LF+
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--R 238
Query: 1341 KKSDYIKLYVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
KK + IKLYVRRVFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 239 KKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 284
>ref|XP_537557.2| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 615
Score = 204 bits (518), Expect = 3e-52
Identities = 115/286 (40%), Positives = 161/286 (56%), Gaps = 16/286 (5%)
Frame = +3
Query: 669 EAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGN 848
EA + G S +IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G
Sbjct: 2 EALQAGADIS-MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGE 60
Query: 849 TLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKT------------- 989
+GRGT + L LKE+ ++YLE IK +VKK+SQFI +PI ++ K
Sbjct: 61 PMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEK 120
Query: 990 ---ETVEEPMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIW 1160
E +E D E +N KPIW
Sbjct: 121 EEKEEEKEKKEKESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIW 180
Query: 1161 QRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGS 1340
R ++ ++EY FYKS + + +D +A HF+ EG++ F+++LFVP AP LF+
Sbjct: 181 TRNPDDITNEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--R 238
Query: 1341 KKSDYIKLYVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
KK + IKLYVRRVFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 239 KKKNNIKLYVRRVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 284
>ref|XP_547152.2| PREDICTED: similar to TNF receptor-associated protein 1 [Canis
familiaris].
Length = 758
Score = 194 bits (492), Expect = 3e-49
Identities = 119/357 (33%), Positives = 193/357 (54%), Gaps = 5/357 (1%)
Frame = +3
Query: 423 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTRE 602
++F+REL+SNASDAL+K+R L++ L E+ + ++ D EK + + DTG+GMT+E
Sbjct: 146 QVFIRELVSNASDALEKLRHKLLSEGQTLP---EMEIHLQTDAEKGTITIQDTGIGMTQE 202
Query: 603 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKH-- 776
ELV NLGTIA+SG+ FL+ + Q +++S++IGQFGVGFYSAF+VAD+V V S+
Sbjct: 203 ELVSNLGTIARSGSKAFLDAL---QNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAA 259
Query: 777 NNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFI 956
+ W SD + IA+ G + GT I + LK ++ ++ ++++V KYS F+
Sbjct: 260 PGSPGYQWLSDGSGVFEIAEASG--VRTGTKIIIHLKSDSREFASEARVRDVVTKYSNFV 317
Query: 957 NFPIYVWSSKTETVEEPMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWEL 1136
+FP+Y+ + T
Sbjct: 318 SFPLYLNGRRINT----------------------------------------------- 330
Query: 1137 MNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPR 1316
++ +W K+V + +++ FY+ ++ D P +H+ + + +SI +VP P
Sbjct: 331 ---LQAVWMMDPKDVGEWQHEEFYRYVAQAHDKPRYTLHYRTDAPLNIRSIFYVPEMKP- 386
Query: 1317 GLFD---EYGSKKSDYIKLYVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
+FD E GS I LY R+V I D++P++L F++GVVDS+D+PLN+SRE
Sbjct: 387 SMFDVSRELGSS----IALYSRKVLIQTKATDILPKWLRFIRGVVDSEDIPLNLSRE 439
>ref|XP_866031.1| PREDICTED: similar to heat shock protein 1, beta isoform 5 [Canis
familiaris].
Length = 480
Score = 173 bits (439), Expect = 4e-43
Identities = 91/163 (55%), Positives = 119/163 (73%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS 812
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES +
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSA 161
Score = 109 bits (273), Expect = 7e-24
Identities = 51/96 (53%), Positives = 72/96 (75%)
Frame = +3
Query: 1191 EYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYV 1370
EY FYKS + + +D +A HF+ EG++ F+++LF+P AP LF+ KK + IKLYV
Sbjct: 167 EYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYV 224
Query: 1371 RRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
RRVFI D +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 225 RRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISRE 260
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,923,464
Number of extensions: 1368215
Number of successful extensions: 5768
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 5639
Number of HSP's successfully gapped: 31
Length of query: 539
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 431
Effective length of database: 15,274,216
Effective search space: 6583187096
Effective search space used: 6583187096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007460
(1618 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003290.1| endoplasmin precursor [Homo sapiens]. 775 0.0
Alignment gi|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens]. 317 2e-86
Alignment gi|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo... 309 6e-84
Alignment gi|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [H... 309 6e-84
Alignment gi|NP_057376.2| heat shock protein 75 kDa, mitochondrial precur... 217 2e-56
>ref|NP_003290.1| endoplasmin precursor [Homo sapiens].
Length = 803
Score = 775 bits (2001), Expect(2) = 0.0
Identities = 398/450 (88%), Positives = 401/450 (89%)
Frame = +3
Query: 132 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 311
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 312 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 491
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 492 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 671
TDENAL+GNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 672 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 851
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 852 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXX 1031
LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPM
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAK 300
Query: 1032 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 1211
P WDWELMNDIKPIWQRPSKEVE+DEYKAFYK
Sbjct: 301 EEKEESDDEAAVEEEEEEKKPKTKKVEKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYK 360
Query: 1212 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 1391
SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD
Sbjct: 361 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 420
Query: 1392 DFHDMMPQYLNFVKGVVDSDDLPLNVSRET 1481
DFHDMMP+YLNFVKGVVDSDDLPLNVSRET
Sbjct: 421 DFHDMMPKYLNFVKGVVDSDDLPLNVSRET 450
Score = 49.3 bits (116), Expect(2) = 0.0
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +1
Query: 1513 KKACP*TLGMIKKIAEEKYNDTFLEEFGSNITLGV 1617
KK TL MIKKIA++KYNDTF +EFG+NI LGV
Sbjct: 462 KKLVRKTLDMIKKIADDKYNDTFWKEFGTNIKLGV 496
>ref|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].
Length = 724
Score = 317 bits (812), Expect = 2e-86
Identities = 179/398 (44%), Positives = 245/398 (61%), Gaps = 13/398 (3%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGR 860
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GR
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGR 177
Query: 861 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK------------TETVEE 1004
GT + L LKE+ ++YLE +K +VKK+SQFI +PI ++ K E E+
Sbjct: 178 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 237
Query: 1005 PMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVE 1184
D E +N KPIW R ++
Sbjct: 238 EEEDKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDIT 297
Query: 1185 DDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKL 1364
+EY FYKS + + +D +A HF+ EG++ F+++LF+P AP LF+ KK + IKL
Sbjct: 298 QEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE--NKKKKNNIKL 355
Query: 1365 YVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
YVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 356 YVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISRE 393
>ref|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo sapiens].
Length = 732
Score = 309 bits (791), Expect = 6e-84
Identities = 174/394 (44%), Positives = 239/394 (60%), Gaps = 15/394 (3%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 189
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPI--YVWSSKTETVEEPMXXXXXXXXXXXXXXX 1055
LKE+ ++YLE IK +VKK+SQFI +PI +V + + V +
Sbjct: 190 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEE 249
Query: 1056 XXXXXXXXXXXXPXXXXXXXXXWDWELMNDIK-------------PIWQRPSKEVEDDEY 1196
D + IK PIW R ++ ++EY
Sbjct: 250 KESEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEY 309
Query: 1197 KAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRR 1376
FYKS + + +D +A HF+ EG++ F+++LFVP AP LF+ KK + IKLYVRR
Sbjct: 310 GEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE--NRKKKNNIKLYVRR 367
Query: 1377 VFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
VFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 368 VFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 401
>ref|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [Homo sapiens].
Length = 854
Score = 309 bits (791), Expect = 6e-84
Identities = 174/394 (44%), Positives = 239/394 (60%), Gaps = 15/394 (3%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 137 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 196
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 197 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 251
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 252 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 311
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPI--YVWSSKTETVEEPMXXXXXXXXXXXXXXX 1055
LKE+ ++YLE IK +VKK+SQFI +PI +V + + V +
Sbjct: 312 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEE 371
Query: 1056 XXXXXXXXXXXXPXXXXXXXXXWDWELMNDIK-------------PIWQRPSKEVEDDEY 1196
D + IK PIW R ++ ++EY
Sbjct: 372 KESEDKPEIEDVGSDEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEEY 431
Query: 1197 KAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRR 1376
FYKS + + +D +A HF+ EG++ F+++LFVP AP LF+ KK + IKLYVRR
Sbjct: 432 GEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE--NRKKKNNIKLYVRR 489
Query: 1377 VFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
VFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 490 VFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 523
>ref|NP_057376.2| heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens].
Length = 704
Score = 217 bits (553), Expect = 2e-56
Identities = 131/391 (33%), Positives = 211/391 (53%), Gaps = 5/391 (1%)
Frame = +3
Query: 321 SQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDE 500
S ++ + K FQAE +++ ++ SLY KE+F+RELISNASDAL+K+R ++D
Sbjct: 76 SSTESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDG 135
Query: 501 NALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQE 680
AL E+ + ++ + EK + + DTG+GMT+EELV NLGTIA+SG+ FL+ + Q
Sbjct: 136 QAL---PEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDAL---QN 189
Query: 681 DGQSTSELIGQFGVGFYSAFLVADKVIVTSKH--NNDTQHIWESDSNEFSVIADPRGNTL 854
+++S++IGQFGVGFYSAF+VAD+V V S+ + W SD + IA+ G +
Sbjct: 190 QAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAEASG--V 247
Query: 855 GRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXXX 1034
GT I + LK + ++ ++++V KYS F++FP+Y+ + T
Sbjct: 248 RTGTKIIIHLKSDCKEFSSEARVRDVVTKYSNFVSFPLYLNGRRMNT------------- 294
Query: 1035 XXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYKS 1214
++ IW K+V + +++ FY+
Sbjct: 295 -------------------------------------LQAIWMMDPKDVREWQHEEFYRY 317
Query: 1215 FSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFD---EYGSKKSDYIKLYVRRVFI 1385
++ D P +H+ + + +SI +VP P +FD E GS + LY R+V I
Sbjct: 318 VAQAHDKPRYTLHYKTDAPLNIRSIFYVPDMKP-SMFDVSRELGSS----VALYSRKVLI 372
Query: 1386 TDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
D++P++L F++GVVDS+D+PLN+SRE
Sbjct: 373 QTKATDILPKWLRFIRGVVDSEDIPLNLSRE 403
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,860,772
Number of extensions: 1341695
Number of successful extensions: 5671
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5535
Number of HSP's successfully gapped: 10
Length of query: 539
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 432
Effective length of database: 14,770,016
Effective search space: 6380646912
Effective search space used: 6380646912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007460
(1618 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035761.1| endoplasmin [Mus musculus]. 770 0.0
Alignment gi|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus]. 317 2e-86
Alignment gi|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus]. 313 2e-85
Alignment gi|NP_080784.1| heat shock protein 75 kDa, mitochondrial precur... 218 1e-56
>ref|NP_035761.1| endoplasmin [Mus musculus].
Length = 802
Score = 770 bits (1988), Expect(2) = 0.0
Identities = 395/450 (87%), Positives = 399/450 (88%)
Frame = +3
Query: 132 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 311
MR LWVLGLCCVLLTFG VRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRVLWVLGLCCVLLTFGFVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 312 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 491
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 492 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 671
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 672 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 851
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 852 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXX 1031
LGRGTTITLVLKEEASDYLELDTIKNLV+KYSQFINFPIYVWSSKTETVEEP+
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVRKYSQFINFPIYVWSSKTETVEEPLEEDEAAK 300
Query: 1032 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 1211
P WDWELMNDIKPIWQRPSKEVE+DEYKAFYK
Sbjct: 301 EEKEESDDEAAVEEEEEEKKPKTKKVEKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYK 360
Query: 1212 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 1391
SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD
Sbjct: 361 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 420
Query: 1392 DFHDMMPQYLNFVKGVVDSDDLPLNVSRET 1481
DFHDMMP+YLNFVKGVVDSDDLPLNVSRET
Sbjct: 421 DFHDMMPKYLNFVKGVVDSDDLPLNVSRET 450
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1
Query: 1513 KKACP*TLGMIKKIAEEKYNDTFLEEFGSNITLGV 1617
KK TL MIKKIA+EKYNDTF +EFG+NI LGV
Sbjct: 462 KKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGV 496
>ref|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].
Length = 724
Score = 317 bits (812), Expect = 2e-86
Identities = 179/398 (44%), Positives = 245/398 (61%), Gaps = 13/398 (3%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGR 860
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GR
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGR 177
Query: 861 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK------------TETVEE 1004
GT + L LKE+ ++YLE +K +VKK+SQFI +PI ++ K E E+
Sbjct: 178 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 237
Query: 1005 PMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVE 1184
D E +N KPIW R ++
Sbjct: 238 EEEDKEDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDIT 297
Query: 1185 DDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKL 1364
+EY FYKS + + +D +A HF+ EG++ F+++LF+P AP LF+ KK + IKL
Sbjct: 298 QEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE--NKKKKNNIKL 355
Query: 1365 YVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
YVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 356 YVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISRE 393
>ref|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].
Length = 733
Score = 313 bits (803), Expect = 2e-85
Identities = 175/395 (44%), Positives = 239/395 (60%), Gaps = 16/395 (4%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 189
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK----------------TETVEEPMX 1013
LKE+ ++YLE IK +VKK+SQFI +PI ++ K E +E
Sbjct: 190 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEEKEEEKEKEE 249
Query: 1014 XXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDE 1193
D E +N KPIW R ++ ++E
Sbjct: 250 KESDDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEE 309
Query: 1194 YKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVR 1373
Y FYKS + + ++ +A HF+ EG++ F+++LFVP AP LF+ KK + IKLYVR
Sbjct: 310 YGEFYKSLTNDWEEHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE--NRKKKNNIKLYVR 367
Query: 1374 RVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
RVFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 368 RVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 402
>ref|NP_080784.1| heat shock protein 75 kDa, mitochondrial precursor [Mus musculus].
Length = 706
Score = 218 bits (555), Expect = 1e-56
Identities = 135/404 (33%), Positives = 214/404 (52%), Gaps = 5/404 (1%)
Frame = +3
Query: 282 REEEAIQLDGLNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASD 461
+EEE++ N +R K E FQAE +++ ++ SLY KE+F+RELISNASD
Sbjct: 68 KEEESLHSIISNTEAVRGSVSKHE---FQAETKKLLDIVARSLYSEKEVFIRELISNASD 124
Query: 462 ALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSG 641
AL+K+R + + L E+ + ++ D +K + + DTG+GMT+EELV NLGTIA+SG
Sbjct: 125 ALEKLRHKLVCEGQVL---PEMEIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSG 181
Query: 642 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKH--NNDTQHIWESDSN 815
+ FL + Q +++S++IGQFGVGFYSAF+VADKV V S+ + W SD +
Sbjct: 182 SKAFLEAL---QNQAETSSKIIGQFGVGFYSAFMVADKVEVYSRSAAPESPGYQWLSDGS 238
Query: 816 EFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTET 995
IA+ G + GT I + LK + D+ ++++V KYS F++FP+Y+ + T
Sbjct: 239 GVFEIAEASG--VRPGTKIIIHLKSDCKDFASESRVQDVVTKYSNFVSFPLYLNGKRINT 296
Query: 996 VEEPMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSK 1175
++ IW K
Sbjct: 297 --------------------------------------------------LQAIWMMDPK 306
Query: 1176 EVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFD---EYGSKK 1346
++ + +++ FY+ ++ D P +H+ + + +SI +VP P +FD E GS
Sbjct: 307 DISEFQHEEFYRYIAQAYDKPRFTLHYKTDAPLNIRSIFYVPEMKP-SMFDVSRELGSS- 364
Query: 1347 SDYIKLYVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
+ LY R+V I D++P++L F++GVVDS+D+PLN+SRE
Sbjct: 365 ---VALYSRKVLIQTKAADILPKWLRFIRGVVDSEDIPLNLSRE 405
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,789,240
Number of extensions: 1136428
Number of successful extensions: 4733
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4573
Number of HSP's successfully gapped: 8
Length of query: 539
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 433
Effective length of database: 12,433,743
Effective search space: 5383810719
Effective search space used: 5383810719
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007460
(1618 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999268.1| endoplasmin precursor [Sus scrofa]. 777 0.0
Alignment gi|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta is... 316 3e-86
Alignment gi|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa]. 315 4e-86
Alignment gi|XP_003355702.1| PREDICTED: endoplasmin-like [Sus scrofa]. 251 2e-75
Alignment gi|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrof... 211 1e-54
>ref|NP_999268.1| endoplasmin precursor [Sus scrofa].
Length = 804
Score = 777 bits (2007), Expect(2) = 0.0
Identities = 399/450 (88%), Positives = 401/450 (89%)
Frame = +3
Query: 132 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 311
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDE+VQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRAEDEVDVDGTVEEDLGKSREGSRTDDEIVQREEEAIQLDG 60
Query: 312 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 491
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 492 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 671
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 672 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 851
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 852 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXX 1031
LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPM
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAK 300
Query: 1032 XXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 1211
P WDWELMNDIKPIWQRPSKEVEDDEYKAFYK
Sbjct: 301 EEKEESDDEAAVEEEEEEKKPKTKKVEKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYK 360
Query: 1212 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 1391
SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD
Sbjct: 361 SFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITD 420
Query: 1392 DFHDMMPQYLNFVKGVVDSDDLPLNVSRET 1481
DFHDMMP+YLNFVKGVVDSDDLPLNVSRET
Sbjct: 421 DFHDMMPKYLNFVKGVVDSDDLPLNVSRET 450
Score = 50.4 bits (119), Expect(2) = 0.0
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1
Query: 1513 KKACP*TLGMIKKIAEEKYNDTFLEEFGSNITLGV 1617
KK TL MIKKIA+EKYNDTF +EFG+NI LGV
Sbjct: 462 KKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGV 496
>ref|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta isoform 1 [Sus scrofa].
Length = 724
Score = 316 bits (809), Expect = 3e-86
Identities = 178/398 (44%), Positives = 245/398 (61%), Gaps = 13/398 (3%)
Frame = +3
Query: 324 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 503
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 504 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 683
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 684 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIADPRGNTLGR 860
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD G +GR
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD-HGEPIGR 177
Query: 861 GTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK------------TETVEE 1004
GT + L LKE+ ++YLE +K +VKK+SQFI +PI ++ K E ++
Sbjct: 178 GTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGDK 237
Query: 1005 PMXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVE 1184
D E +N KPIW R ++
Sbjct: 238 EEEDKDDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDIT 297
Query: 1185 DDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKL 1364
+EY FYKS + + +D +A HF+ EG++ F+++LF+P AP LF+ KK + IKL
Sbjct: 298 QEEYGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFE--NKKKKNNIKL 355
Query: 1365 YVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
YVRRVFI D +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 356 YVRRVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISRE 393
>ref|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].
Length = 733
Score = 315 bits (808), Expect = 4e-86
Identities = 176/395 (44%), Positives = 240/395 (60%), Gaps = 16/395 (4%)
Frame = +3
Query: 342 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 521
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 522 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 701
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 702 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLV 881
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + + G +GRGT + L
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILH 189
Query: 882 LKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK----------------TETVEEPMX 1013
LKE+ ++YLE IK +VKK+SQFI +PI ++ K E +E
Sbjct: 190 LKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVSDDEAEEKEDKEEEKEKEE 249
Query: 1014 XXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDE 1193
D E +N KPIW R ++ ++E
Sbjct: 250 KESEDKPEIEDVGSDEEEEEKKDGDKKKKKKIKEKYIDQEELNKTKPIWTRNPDDITNEE 309
Query: 1194 YKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVR 1373
Y FYKS + + +D +A HF+ EG++ F+++LFVP AP LF+ KK + IKLYVR
Sbjct: 310 YGEFYKSLTNDWEDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFE--NRKKKNNIKLYVR 367
Query: 1374 RVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRE 1478
RVFI D+ +++P+YLNF++GVVDS+DLPLN+SRE
Sbjct: 368 RVFIMDNCEELIPEYLNFIRGVVDSEDLPLNISRE 402
>ref|XP_003355702.1| PREDICTED: endoplasmin-like [Sus scrofa].
Length = 492
Score = 251 bits (642), Expect(2) = 2e-75
Identities = 119/120 (99%), Positives = 120/120 (100%)
Frame = +3
Query: 1122 WDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVP 1301
WDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVP
Sbjct: 19 WDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVP 78
Query: 1302 TSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPQYLNFVKGVVDSDDLPLNVSRET 1481
TSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMP+YLNFVKGVVDSDDLPLNVSRET
Sbjct: 79 TSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRET 138
Score = 50.4 bits (119), Expect(2) = 2e-75
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = +1
Query: 1513 KKACP*TLGMIKKIAEEKYNDTFLEEFGSNITLGV 1617
KK TL MIKKIA+EKYNDTF +EFG+NI LGV
Sbjct: 150 KKLVRKTLDMIKKIADEKYNDTFWKEFGTNIKLGV 184
>ref|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrofa].
Length = 702
Score = 211 bits (536), Expect = 1e-54
Identities = 125/377 (33%), Positives = 202/377 (53%), Gaps = 2/377 (0%)
Frame = +3
Query: 354 KFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTV 533
K FQAE +++ ++ SLY KE+F+RELISNASDAL+++R +++ L E+ +
Sbjct: 85 KHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALERLRHKLVSEGQTLP---EMEI 141
Query: 534 KIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQ 713
++ D EK + + DTGVGMTREELV NLGTIA+SG+ FL+ + Q +++ ++IGQ
Sbjct: 142 HLQTDSEKGTITIQDTGVGMTREELVSNLGTIARSGSKAFLDAL---QNQAEASGKIIGQ 198
Query: 714 FGVGFYSAFLVADKVIVTSK--HNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLK 887
FGVGFYSAF+VADKV V S+ W SD + IA+ G + GT I + LK
Sbjct: 199 FGVGFYSAFMVADKVEVYSRSVDAGSPGFQWLSDGSGVFEIAEAAG--VRTGTKIIIHLK 256
Query: 888 EEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMXXXXXXXXXXXXXXXXXXX 1067
++ ++ ++++V KYS F++FP+Y+ + T
Sbjct: 257 ADSREFAHEARVRDVVTKYSNFVSFPLYLNGRRLNT------------------------ 292
Query: 1068 XXXXXXXXPXXXXXXXXXWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKESDDPMAY 1247
++ +W K+V +++++ FY+ ++ D P
Sbjct: 293 --------------------------LQAVWMMDPKDVSEEQHEEFYRYVAQAPDKPRYT 326
Query: 1248 IHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPQYLNF 1427
+H+ + + +S +VP P +FD + + LY R+V I +++P +L F
Sbjct: 327 LHYKTDAPLNIRSTFYVPEMKP-SVFD-VSRELGPSVSLYSRKVLIQTKATNILPTWLRF 384
Query: 1428 VKGVVDSDDLPLNVSRE 1478
V+GVVDS+D+PLN+SRE
Sbjct: 385 VRGVVDSEDIPLNLSRE 401
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,280,078
Number of extensions: 1002280
Number of successful extensions: 3599
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3504
Number of HSP's successfully gapped: 10
Length of query: 539
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 435
Effective length of database: 8,754,644
Effective search space: 3808270140
Effective search space used: 3808270140
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007460
(1618 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 662 0.0
Sscrofa_Chr07 62 1e-06
>Sscrofa_Chr05
|| Length = 111506441
Score = 662 bits (334), Expect = 0.0
Identities = 334/334 (100%)
Strand = Plus / Minus
Query: 541 agtgtgacaaggagaagaacctgctccatgtcacagacactggtgtgggaatgacccggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079852 agtgtgacaaggagaagaacctgctccatgtcacagacactggtgtgggaatgacccggg 84079793
Query: 601 aagagttggttaaaaaccttggtaccatagccaaatctgggacaagcgagtttttaaaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079792 aagagttggttaaaaaccttggtaccatagccaaatctgggacaagcgagtttttaaaca 84079733
Query: 661 aaatgacggaggcacaagaagatggccagtcaacttcggaactgattggccagttcggtg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079732 aaatgacggaggcacaagaagatggccagtcaacttcggaactgattggccagttcggtg 84079673
Query: 721 ttggcttctattctgccttccttgtagcagataaagttattgtcacgtcaaaacacaaca 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079672 ttggcttctattctgccttccttgtagcagataaagttattgtcacgtcaaaacacaaca 84079613
Query: 781 atgacacccagcacatctgggagtccgactccaatgaattttctgtaattgctgacccca 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079612 atgacacccagcacatctgggagtccgactccaatgaattttctgtaattgctgacccca 84079553
Query: 841 gaggaaacaccttaggacggggaacgacaattac 874
||||||||||||||||||||||||||||||||||
Sbjct: 84079552 gaggaaacaccttaggacggggaacgacaattac 84079519
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 282 agagaggaagaagctattcaattggatggattaaatgcatcccaaataagagaacttaga 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84082051 agagaggaagaagctattcaattggatggattaaatgcatcccaaataagagaacttaga 84081992
Query: 342 gagaaatcagaaaaatttgccttccaagctgaagttaacagaatgatgaaacttatcatc 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84081991 gagaaatcagaaaaatttgccttccaagctgaagttaacagaatgatgaaacttatcatc 84081932
Query: 402 aattcattatataaaaataaagag 425
||||||||||||||||||||||||
Sbjct: 84081931 aattcattatataaaaataaagag 84081908
Score = 276 bits (139), Expect = 4e-71
Identities = 167/181 (92%)
Strand = Plus / Minus
Query: 1 gcggcccgacctgcttnnnnnnnagtgggcggatcgcacggcttgtggttgtgaggttct 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 84084050 gcggcccgacctgcttggggggtagtgggcggatcgcacggcttgtggttgtgaggttct 84083991
Query: 61 gagcccaggggannnnnnncggaggtggctccttcgatcaaaggggacttgagactcacc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 84083990 gagcccaggggagggggggcggaggtggctccttcgatcaaaggggacttgagactcacc 84083931
Query: 121 ggccgtgcgacatgagggccctgtgggtgctgggcctgtgctgcgtcctgctgaccttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84083930 ggccgtgcgacatgagggccctgtgggtgctgggcctgtgctgcgtcctgctgaccttcg 84083871
Query: 181 g 181
|
Sbjct: 84083870 g 84083870
Score = 270 bits (136), Expect = 2e-69
Identities = 139/140 (99%)
Strand = Plus / Minus
Query: 1222 aggaaagcgacgaccccatggcctatatccacttcactgctgaaggggaagttaccttca 1281
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 84021653 aggaaagcgacgaccccatggcttatatccacttcactgctgaaggggaagttaccttca 84021594
Query: 1282 agtcaattttatttgtacccacatctgccccacgtgggctatttgatgaatatggatcta 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84021593 agtcaattttatttgtacccacatctgccccacgtgggctatttgatgaatatggatcta 84021534
Query: 1342 agaagagtgattacattaag 1361
||||||||||||||||||||
Sbjct: 84021533 agaagagtgattacattaag 84021514
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 424 agattttcctaagagaactgatttcaaatgcttctgatgctttggataagataaggctaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84081340 agattttcctaagagaactgatttcaaatgcttctgatgctttggataagataaggctaa 84081281
Query: 484 tatcactgactgatgaaaatgctcttgctggaaatgaggagttaacggtcaaaattaag 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84081280 tatcactgactgatgaaaatgctcttgctggaaatgaggagttaacggtcaaaattaag 84081222
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 1117 ctgtctgggactgggaacttatgaatgatatcaaaccaatatggcagagaccatcaaagg 1176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84024041 ctgtctgggactgggaacttatgaatgatatcaaaccaatatggcagagaccatcaaagg 84023982
Query: 1177 aagtagaagatgatgaatacaaagctttctacaaatcattttcaaagg 1224
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84023981 aagtagaagatgatgaatacaaagctttctacaaatcattttcaaagg 84023934
Score = 182 bits (92), Expect = 4e-43
Identities = 101/104 (97%)
Strand = Plus / Minus
Query: 180 gggtctgtccgcgctgaggatgaagtggatgtggatgggacagtggaagaagatctgggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84082880 gggtctgtccgcgctgaggatgaagtggatgtggatgggacagtggaagaagatctgggt 84082821
Query: 240 aaaagtagagaaggttccaggacagatgatgaagtagtacagag 283
|||||||||||| ||||||||||||| ||||||||| |||||||
Sbjct: 84082820 aaaagtagagaaagttccaggacagacgatgaagtaatacagag 84082777
Score = 155 bits (78), Expect = 9e-35
Identities = 81/82 (98%)
Strand = Plus / Minus
Query: 1360 agctgtatgtgcgccgcgtgttcatcacagacgacttccatgatatgatgccccagtacc 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 84021434 agctgtatgtgcgccgcgtgttcatcacagacgacttccatgatatgatgcccaagtacc 84021375
Query: 1420 tgaacttcgtcaagggcgttgt 1441
||||||||||||||||||||||
Sbjct: 84021374 tgaacttcgtcaagggcgttgt 84021353
Score = 107 bits (54), Expect = 2e-20
Identities = 66/70 (94%)
Strand = Plus / Minus
Query: 1440 gtggactcagatgatctccccttgaatgtttcccgtgagactctgccaccacctaaactc 1499
|||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 84021245 gtggactcagatgatctccccttgaatgtttcccgtgagactctgcagcaacataaactc 84021186
Query: 1500 cttaaggtga 1509
||||||||||
Sbjct: 84021185 cttaaggtga 84021176
Score = 75.8 bits (38), Expect = 7e-11
Identities = 59/66 (89%)
Strand = Plus / Minus
Query: 1553 ttgctgaagagaaatataatgatacttttttggaagaatttggttccaacatcacacttg 1612
||||||| ||||| |||||||||||||||| | ||||||||||| ||||||||| ||||
Sbjct: 84020550 ttgctgatgagaagtataatgatactttttggaaagaatttggtaccaacatcaagcttg 84020491
Query: 1613 gtgtga 1618
||||||
Sbjct: 84020490 gtgtga 84020485
>Sscrofa_Chr07
|| Length = 134764511
Score = 61.9 bits (31), Expect = 1e-06
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 703 tgattggccagttcggtgttggcttctattctgccttccttgtagcagataaagt 757
||||||| ||||| |||||||||||||||||||||| ||| || ||||| |||||
Sbjct: 45115619 tgattggacagtttggtgttggcttctattctgcctacctggtggcagagaaagt 45115673
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,332,187
Number of extensions: 430
Number of successful extensions: 430
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 11
Length of query: 1618
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1596
Effective length of database: 2,808,408,574
Effective search space: 4482220084104
Effective search space used: 4482220084104
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)