Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007461
(1072 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777125.1| endoplasmin precursor [Bos taurus]. 434 e-122
Alignment gi|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus]. 176 9e-50
Alignment gi|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus]. 172 1e-48
Alignment gi|NP_001033764.1| heat shock protein 75 kDa, mitochondrial pre... 136 4e-32
>ref|NP_777125.1| endoplasmin precursor [Bos taurus].
Length = 804
Score = 434 bits (1115), Expect = e-122
Identities = 232/270 (85%), Positives = 237/270 (87%)
Frame = +1
Query: 172 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 351
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 352 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 531
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 532 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 711
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 712 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRRKH 891
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPR
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 892 LRTGNDNYPLFKKKSI*LP*IGYNKNLGKK 981
L G + K+++ + KNL KK
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKK 270
Score = 96.3 bits (238), Expect = 4e-20
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +2
Query: 878 PEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VWSNQTETVQEPMEK 1057
P GNTLGRGTTITL LK++ASDYLELDTIK KK++QFINFP VWS++TETV+EP E+
Sbjct: 236 PRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPAEE 295
Query: 1058 EKAPK 1072
E+A K
Sbjct: 296 EEAAK 300
>ref|NP_001073105.1| heat shock protein HSP 90-beta [Bos taurus].
Length = 724
Score = 176 bits (446), Expect(2) = 9e-50
Identities = 96/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +LV NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLVNNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD 170
Score = 40.0 bits (92), Expect(2) = 9e-50
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VW---SNQTETVQEPME 1054
G +GRGT + L LK+ ++YLE +K KK +QFI +P ++ + E + E
Sbjct: 172 GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAE 231
Query: 1055 KEKAPK 1072
+EK K
Sbjct: 232 EEKGEK 237
>ref|NP_001012688.1| heat shock protein HSP 90-alpha [Bos taurus].
Length = 733
Score = 172 bits (437), Expect(2) = 1e-48
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD 175
Score = 39.7 bits (91), Expect(2) = 1e-48
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 174 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 217
>ref|NP_001033764.1| heat shock protein 75 kDa, mitochondrial precursor [Bos taurus].
Length = 703
Score = 136 bits (342), Expect = 4e-32
Identities = 76/183 (41%), Positives = 118/183 (64%), Gaps = 2/183 (1%)
Frame = +1
Query: 361 SQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDE 540
S + ++ + K FQAE +++ ++ SLY KE+F+RELISNASDAL+K+R +++
Sbjct: 75 SSLEAVQGSATKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSEG 134
Query: 541 NALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQE 720
AL ++ + ++ D ++ + + DTGVGM+REELV NLGTIA+SG+ FL+ + Q
Sbjct: 135 QAL---PDMEIHLQTDADRGTITIQDTGVGMSREELVSNLGTIARSGSKAFLDAL---QN 188
Query: 721 DGQSTSELIGQFGVGFYSAFLVADKVIVTSK--HNNDTQHIWESDSNEFSVIADPRRKHL 894
++ S++IGQFGVGFYSAF+VAD+V V S+ + W SD + +A+ +
Sbjct: 189 QAEAGSKIIGQFGVGFYSAFMVADRVEVYSRSVDAGSLGYRWLSDGSGVFEVAE--ASGV 246
Query: 895 RTG 903
RTG
Sbjct: 247 RTG 249
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,813,917
Number of extensions: 1109547
Number of successful extensions: 4693
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4637
Number of HSP's successfully gapped: 7
Length of query: 357
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 254
Effective length of database: 14,273,310
Effective search space: 3625420740
Effective search space used: 3625420740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007461
(1072 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003327.1| endoplasmin precursor [Canis lupus familiari... 434 e-122
Alignment gi|XP_532154.2| PREDICTED: similar to heat shock protein 1, bet... 176 1e-49
Alignment gi|XP_866000.1| PREDICTED: similar to heat shock protein 1, bet... 176 1e-49
Alignment gi|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90... 172 2e-48
Alignment gi|XP_848783.1| PREDICTED: similar to heat shock protein 1, alp... 172 2e-48
Alignment gi|XP_866031.1| PREDICTED: similar to heat shock protein 1, bet... 173 2e-43
Alignment gi|XP_865988.1| PREDICTED: similar to Heat shock protein HSP 90... 165 8e-41
Alignment gi|XP_850100.1| PREDICTED: similar to Heat shock protein HSP 90... 111 1e-28
Alignment gi|XP_857093.1| PREDICTED: similar to Heat shock protein HSP 90... 121 1e-27
Alignment gi|XP_547152.2| PREDICTED: similar to TNF receptor-associated p... 117 2e-26
>ref|NP_001003327.1| endoplasmin precursor [Canis lupus familiaris].
Length = 804
Score = 434 bits (1115), Expect = e-122
Identities = 232/270 (85%), Positives = 237/270 (87%)
Frame = +1
Query: 172 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 351
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 352 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 531
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 532 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 711
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 712 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRRKH 891
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPR
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 892 LRTGNDNYPLFKKKSI*LP*IGYNKNLGKK 981
L G + K+++ + KNL KK
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKK 270
Score = 98.6 bits (244), Expect = 9e-21
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = +2
Query: 878 PEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VWSNQTETVQEPMEK 1057
P GNTLGRGTTITL LK++ASDYLELDTIK KK++QFINFP VWS++TETV+EPME+
Sbjct: 236 PRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEE 295
Query: 1058 EKAPK 1072
E+A K
Sbjct: 296 EEAAK 300
>ref|XP_532154.2| PREDICTED: similar to heat shock protein 1, beta isoform 1 [Canis
familiaris].
Length = 636
Score = 176 bits (445), Expect(2) = 1e-49
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD 170
Score = 40.0 bits (92), Expect(2) = 1e-49
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VW---SNQTETVQEPME 1054
G +GRGT + L LK+ ++YLE +K KK +QFI +P ++ + E + E
Sbjct: 172 GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAE 231
Query: 1055 KEKAPK 1072
+EK K
Sbjct: 232 EEKGEK 237
>ref|XP_866000.1| PREDICTED: similar to heat shock protein 1, beta isoform 3 [Canis
familiaris].
Length = 324
Score = 176 bits (445), Expect(2) = 1e-49
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD 170
Score = 40.0 bits (92), Expect(2) = 1e-49
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VW---SNQTETVQEPME 1054
G +GRGT + L LK+ ++YLE +K KK +QFI +P ++ + E + E
Sbjct: 172 GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAE 231
Query: 1055 KEKAPK 1072
+EK K
Sbjct: 232 EEKGEK 237
>ref|XP_857137.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 3 [Canis familiaris].
Length = 543
Score = 172 bits (436), Expect(2) = 2e-48
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFM----EALQAGADIS- 129
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTD 175
Score = 39.7 bits (91), Expect(2) = 2e-48
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 174 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 217
>ref|XP_848783.1| PREDICTED: similar to heat shock protein 1, alpha isoform 1 [Canis
familiaris].
Length = 483
Score = 172 bits (436), Expect(2) = 2e-48
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKVFM----EALQAGADIS- 129
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDKQYAWESSAGGSFTVRTD 175
Score = 39.7 bits (91), Expect(2) = 2e-48
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 174 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 217
>ref|XP_866031.1| PREDICTED: similar to heat shock protein 1, beta isoform 5 [Canis
familiaris].
Length = 480
Score = 173 bits (439), Expect = 2e-43
Identities = 91/163 (55%), Positives = 119/163 (73%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS 852
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES +
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSA 161
>ref|XP_865988.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
(Tumor specific transplantation 84 kDa antigen) (TSTA)
isoform 2 [Canis familiaris].
Length = 183
Score = 165 bits (417), Expect = 8e-41
Identities = 88/156 (56%), Positives = 114/156 (73%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQ 831
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQ 154
>ref|XP_850100.1| PREDICTED: similar to Heat shock protein HSP 90-beta (HSP 84)
[Canis familiaris].
Length = 298
Score = 111 bits (277), Expect(2) = 1e-28
Identities = 71/172 (41%), Positives = 88/172 (51%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ EK E FAFQAE ++M LI N+ NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 130 EVHHGEEKVETFAFQAETAQLMSLIFNTFSSNKEIFLRELISNASDALDKIRYESLTDFS 189
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I
Sbjct: 190 KLDSGKELKIDI------------------------------------------------ 201
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 202 -----SMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESPAGGSFTVRAD 248
Score = 34.3 bits (77), Expect(2) = 1e-28
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
G +G+GT + L LK+ ++YLE +K KK ++FI +P
Sbjct: 250 GEPIGQGTKMILHLKEDQTEYLEETHVKEVVKKHSKFIGYP 290
>ref|XP_857093.1| PREDICTED: similar to Heat shock protein HSP 90-alpha (HSP 86)
isoform 2 [Canis familiaris].
Length = 509
Score = 121 bits (304), Expect = 1e-27
Identities = 61/103 (59%), Positives = 78/103 (75%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSE 690
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT E
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKE 117
>ref|XP_547152.2| PREDICTED: similar to TNF receptor-associated protein 1 [Canis
familiaris].
Length = 758
Score = 117 bits (292), Expect = 2e-26
Identities = 67/149 (44%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Frame = +1
Query: 463 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTRE 642
++F+REL+SNASDAL+K+R L++ L E+ + ++ D EK + + DTG+GMT+E
Sbjct: 146 QVFIRELVSNASDALEKLRHKLLSEGQTLP---EMEIHLQTDAEKGTITIQDTGIGMTQE 202
Query: 643 ELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKH-- 816
ELV NLGTIA+SG+ FL+ + Q +++S++IGQFGVGFYSAF+VAD+V V S+
Sbjct: 203 ELVSNLGTIARSGSKAFLDAL---QNQAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAA 259
Query: 817 NNDTQHIWESDSNEFSVIADPRRKHLRTG 903
+ W SD + IA+ +RTG
Sbjct: 260 PGSPGYQWLSDGSGVFEIAE--ASGVRTG 286
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,686,389
Number of extensions: 1151450
Number of successful extensions: 4930
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 4847
Number of HSP's successfully gapped: 28
Length of query: 357
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 253
Effective length of database: 15,407,560
Effective search space: 3898112680
Effective search space used: 3898112680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007461
(1072 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003290.1| endoplasmin precursor [Homo sapiens]. 432 e-121
Alignment gi|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens]. 176 1e-49
Alignment gi|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [H... 172 1e-48
Alignment gi|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo... 172 1e-48
Alignment gi|NP_057376.2| heat shock protein 75 kDa, mitochondrial precur... 140 3e-33
>ref|NP_003290.1| endoplasmin precursor [Homo sapiens].
Length = 803
Score = 432 bits (1112), Expect = e-121
Identities = 231/270 (85%), Positives = 237/270 (87%)
Frame = +1
Query: 172 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 351
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 352 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 531
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 532 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 711
TDENAL+GNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 712 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRRKH 891
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPR
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 892 LRTGNDNYPLFKKKSI*LP*IGYNKNLGKK 981
L G + K+++ + KNL KK
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKK 270
Score = 98.6 bits (244), Expect = 9e-21
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = +2
Query: 878 PEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VWSNQTETVQEPMEK 1057
P GNTLGRGTTITL LK++ASDYLELDTIK KK++QFINFP VWS++TETV+EPME+
Sbjct: 236 PRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEE 295
Query: 1058 EKAPK 1072
E+A K
Sbjct: 296 EEAAK 300
>ref|NP_031381.2| heat shock protein HSP 90-beta [Homo sapiens].
Length = 724
Score = 176 bits (445), Expect(2) = 1e-49
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD 170
Score = 40.0 bits (92), Expect(2) = 1e-49
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VW---SNQTETVQEPME 1054
G +GRGT + L LK+ ++YLE +K KK +QFI +P ++ + E + E
Sbjct: 172 GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAE 231
Query: 1055 KEKAPK 1072
+EK K
Sbjct: 232 EEKGEK 237
>ref|NP_001017963.2| heat shock protein HSP 90-alpha isoform 1 [Homo sapiens].
Length = 854
Score = 172 bits (437), Expect(2) = 1e-48
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 137 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 196
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 197 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 251
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 252 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD 297
Score = 39.7 bits (91), Expect(2) = 1e-48
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 296 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 339
>ref|NP_005339.3| heat shock protein HSP 90-alpha isoform 2 [Homo sapiens].
Length = 732
Score = 172 bits (437), Expect(2) = 1e-48
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD 175
Score = 39.7 bits (91), Expect(2) = 1e-48
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 174 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 217
>ref|NP_057376.2| heat shock protein 75 kDa, mitochondrial precursor [Homo sapiens].
Length = 704
Score = 140 bits (352), Expect = 3e-33
Identities = 79/183 (43%), Positives = 118/183 (64%), Gaps = 2/183 (1%)
Frame = +1
Query: 361 SQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDE 540
S ++ + K FQAE +++ ++ SLY KE+F+RELISNASDAL+K+R ++D
Sbjct: 76 SSTESVQGSTSKHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALEKLRHKLVSDG 135
Query: 541 NALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQE 720
AL E+ + ++ + EK + + DTG+GMT+EELV NLGTIA+SG+ FL+ + Q
Sbjct: 136 QAL---PEMEIHLQTNAEKGTITIQDTGIGMTQEELVSNLGTIARSGSKAFLDAL---QN 189
Query: 721 DGQSTSELIGQFGVGFYSAFLVADKVIVTSKH--NNDTQHIWESDSNEFSVIADPRRKHL 894
+++S++IGQFGVGFYSAF+VAD+V V S+ + W SD + IA+ +
Sbjct: 190 QAEASSKIIGQFGVGFYSAFMVADRVEVYSRSAAPGSLGYQWLSDGSGVFEIAE--ASGV 247
Query: 895 RTG 903
RTG
Sbjct: 248 RTG 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,779,437
Number of extensions: 1121121
Number of successful extensions: 4681
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4624
Number of HSP's successfully gapped: 9
Length of query: 357
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 253
Effective length of database: 14,868,908
Effective search space: 3761833724
Effective search space used: 3761833724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007461
(1072 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035761.1| endoplasmin [Mus musculus]. 429 e-120
Alignment gi|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus]. 176 1e-49
Alignment gi|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus]. 172 1e-48
Alignment gi|NP_080784.1| heat shock protein 75 kDa, mitochondrial precur... 138 8e-33
>ref|NP_035761.1| endoplasmin [Mus musculus].
Length = 802
Score = 429 bits (1102), Expect = e-120
Identities = 229/270 (84%), Positives = 235/270 (87%)
Frame = +1
Query: 172 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 351
MR LWVLGLCCVLLTFG VRA LGKSREGSRTDDEVVQREEEAIQLDG
Sbjct: 1 MRVLWVLGLCCVLLTFGFVRADDEVDVDGTVEEDLGKSREGSRTDDEVVQREEEAIQLDG 60
Query: 352 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 531
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 532 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 711
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 712 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRRKH 891
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPR
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 892 LRTGNDNYPLFKKKSI*LP*IGYNKNLGKK 981
L G + K+++ + KNL +K
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVRK 270
Score = 95.1 bits (235), Expect = 8e-20
Identities = 45/65 (69%), Positives = 57/65 (87%)
Frame = +2
Query: 878 PEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VWSNQTETVQEPMEK 1057
P GNTLGRGTTITL LK++ASDYLELDTIK +K++QFINFP VWS++TETV+EP+E+
Sbjct: 236 PRGNTLGRGTTITLVLKEEASDYLELDTIKNLVRKYSQFINFPIYVWSSKTETVEEPLEE 295
Query: 1058 EKAPK 1072
++A K
Sbjct: 296 DEAAK 300
>ref|NP_032328.2| heat shock protein HSP 90-beta [Mus musculus].
Length = 724
Score = 176 bits (445), Expect(2) = 1e-49
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD 170
Score = 40.0 bits (92), Expect(2) = 1e-49
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VW---SNQTETVQEPME 1054
G +GRGT + L LK+ ++YLE +K KK +QFI +P ++ + E + E
Sbjct: 172 GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAE 231
Query: 1055 KEKAPK 1072
+EK K
Sbjct: 232 EEKGEK 237
>ref|NP_034610.1| heat shock protein HSP 90-alpha [Mus musculus].
Length = 733
Score = 172 bits (436), Expect(2) = 1e-48
Identities = 93/166 (56%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPSKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD 175
Score = 39.7 bits (91), Expect(2) = 1e-48
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 174 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 217
>ref|NP_080784.1| heat shock protein 75 kDa, mitochondrial precursor [Mus musculus].
Length = 706
Score = 138 bits (347), Expect = 8e-33
Identities = 80/187 (42%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Frame = +1
Query: 322 REEEAIQLDGLNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASD 501
+EEE++ N +R K E FQAE +++ ++ SLY KE+F+RELISNASD
Sbjct: 68 KEEESLHSIISNTEAVRGSVSKHE---FQAETKKLLDIVARSLYSEKEVFIRELISNASD 124
Query: 502 ALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSG 681
AL+K+R + + L E+ + ++ D +K + + DTG+GMT+EELV NLGTIA+SG
Sbjct: 125 ALEKLRHKLVCEGQVL---PEMEIHLQTDAKKGTITIQDTGIGMTQEELVSNLGTIARSG 181
Query: 682 TSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKH--NNDTQHIWESDSN 855
+ FL + Q +++S++IGQFGVGFYSAF+VADKV V S+ + W SD +
Sbjct: 182 SKAFLEAL---QNQAETSSKIIGQFGVGFYSAFMVADKVEVYSRSAAPESPGYQWLSDGS 238
Query: 856 EFSVIAD 876
IA+
Sbjct: 239 GVFEIAE 245
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,602,025
Number of extensions: 940257
Number of successful extensions: 3803
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3732
Number of HSP's successfully gapped: 7
Length of query: 357
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 255
Effective length of database: 12,553,887
Effective search space: 3201241185
Effective search space used: 3201241185
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007461
(1072 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999268.1| endoplasmin precursor [Sus scrofa]. 433 e-122
Alignment gi|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta is... 176 7e-50
Alignment gi|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa]. 172 8e-49
Alignment gi|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrof... 137 1e-32
>ref|NP_999268.1| endoplasmin precursor [Sus scrofa].
Length = 804
Score = 433 bits (1114), Expect = e-122
Identities = 231/270 (85%), Positives = 237/270 (87%)
Frame = +1
Query: 172 MRALWVLGLCCVLLTFGSVRAXXXXXXXXXXXXXLGKSREGSRTDDEVVQREEEAIQLDG 351
MRALWVLGLCCVLLTFGSVRA LGKSREGSRTDDE+VQREEEAIQLDG
Sbjct: 1 MRALWVLGLCCVLLTFGSVRAEDEVDVDGTVEEDLGKSREGSRTDDEIVQREEEAIQLDG 60
Query: 352 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 531
LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL
Sbjct: 61 LNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISL 120
Query: 532 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 711
TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE
Sbjct: 121 TDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTE 180
Query: 712 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRRKH 891
AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPR
Sbjct: 181 AQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNT 240
Query: 892 LRTGNDNYPLFKKKSI*LP*IGYNKNLGKK 981
L G + K+++ + KNL KK
Sbjct: 241 LGRGTTITLVLKEEASDYLELDTIKNLVKK 270
Score = 98.6 bits (244), Expect = 5e-21
Identities = 48/65 (73%), Positives = 57/65 (87%)
Frame = +2
Query: 878 PEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VWSNQTETVQEPMEK 1057
P GNTLGRGTTITL LK++ASDYLELDTIK KK++QFINFP VWS++TETV+EPME+
Sbjct: 236 PRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEE 295
Query: 1058 EKAPK 1072
E+A K
Sbjct: 296 EEAAK 300
>ref|XP_001929605.1| PREDICTED: heat shock protein HSP 90-beta isoform 1 [Sus scrofa].
Length = 724
Score = 176 bits (445), Expect(2) = 7e-50
Identities = 95/172 (55%), Positives = 124/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 364 QIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDEN 543
++ E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISNASDALDKIR SLTD +
Sbjct: 4 EVHHGEEEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPS 63
Query: 544 ALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQED 723
L +EL + I + ++ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA +
Sbjct: 64 KLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQA 119
Query: 724 GQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
G S +IGQFGVGFYSA+LVA+KV+V +KHN+D Q+ WES + F+V AD
Sbjct: 120 GADIS-MIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRAD 170
Score = 40.0 bits (92), Expect(2) = 7e-50
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = +2
Query: 884 GNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFPN*VW---SNQTETVQEPME 1054
G +GRGT + L LK+ ++YLE +K KK +QFI +P ++ + E + E
Sbjct: 172 GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAE 231
Query: 1055 KEKAPK 1072
+EK K
Sbjct: 232 EEKGDK 237
>ref|NP_999138.1| heat shock protein HSP 90-alpha [Sus scrofa].
Length = 733
Score = 172 bits (437), Expect(2) = 8e-49
Identities = 93/166 (56%), Positives = 120/166 (72%), Gaps = 1/166 (0%)
Frame = +1
Query: 382 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNE 561
E+ E FAFQAE+ ++M LIIN+ Y NKEIFLRELISN+SDALDKIR SLTD + L +
Sbjct: 15 EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGK 74
Query: 562 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSE 741
EL + + +K+ L + DTG+GMT+ +L+ NLGTIAKSGT F+ EA + G S
Sbjct: 75 ELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFM----EALQAGADIS- 129
Query: 742 LIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NEFSVIAD 876
+IGQFGVGFYSA+LVA+KV V +KHN+D Q+ WES + F+V D
Sbjct: 130 MIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTD 175
Score = 39.7 bits (91), Expect(2) = 8e-49
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = +2
Query: 875 TPEGNTLGRGTTITLCLKKKASDYLELDTIKISGKKFTQFINFP 1006
T G +GRGT + L LK+ ++YLE IK KK +QFI +P
Sbjct: 174 TDTGEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYP 217
>ref|NP_001230874.1| TNF receptor-associated protein 1 [Sus scrofa].
Length = 702
Score = 137 bits (344), Expect = 1e-32
Identities = 70/140 (50%), Positives = 100/140 (71%)
Frame = +1
Query: 394 KFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALAGNEELTV 573
K FQAE +++ ++ SLY KE+F+RELISNASDAL+++R +++ L E+ +
Sbjct: 85 KHEFQAETKKLLDIVARSLYSEKEVFIRELISNASDALERLRHKLVSEGQTLP---EMEI 141
Query: 574 KIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQ 753
++ D EK + + DTGVGMTREELV NLGTIA+SG+ FL+ + Q +++ ++IGQ
Sbjct: 142 HLQTDSEKGTITIQDTGVGMTREELVSNLGTIARSGSKAFLDAL---QNQAEASGKIIGQ 198
Query: 754 FGVGFYSAFLVADKVIVTSK 813
FGVGFYSAF+VADKV V S+
Sbjct: 199 FGVGFYSAFMVADKVEVYSR 218
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,649,097
Number of extensions: 715249
Number of successful extensions: 3018
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2976
Number of HSP's successfully gapped: 7
Length of query: 357
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 257
Effective length of database: 8,854,232
Effective search space: 2275537624
Effective search space used: 2275537624
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007461
(1072 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 648 0.0
Sscrofa_Chr07 62 7e-07
>Sscrofa_Chr05
|| Length = 111506441
Score = 648 bits (327), Expect = 0.0
Identities = 334/335 (99%), Gaps = 1/335 (0%)
Strand = Plus / Minus
Query: 581 agtgtgacaaggagaagaacctgctccatgtcacagacactggtgtgggaatgacccggg 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079852 agtgtgacaaggagaagaacctgctccatgtcacagacactggtgtgggaatgacccggg 84079793
Query: 641 aagagttggttaaaaaccttggtaccatagccaaatctgggacaagcgagtttttaaaca 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079792 aagagttggttaaaaaccttggtaccatagccaaatctgggacaagcgagtttttaaaca 84079733
Query: 701 aaatgacggaggcacaagaagatggccagtcaacttcggaactgattggccagttcggtg 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079732 aaatgacggaggcacaagaagatggccagtcaacttcggaactgattggccagttcggtg 84079673
Query: 761 ttggcttctattctgccttccttgtagcagataaagttattgtcacgtcaaaacacaaca 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079672 ttggcttctattctgccttccttgtagcagataaagttattgtcacgtcaaaacacaaca 84079613
Query: 821 atgacacccagcacatctgggagtccgactccaatgaattttctgtaattgctgacccca 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84079612 atgacacccagcacatctgggagtccgactccaatgaattttctgtaattgctgacccca 84079553
Query: 881 gaaggaaacaccttaggacggggaacgacaattac 915
| |||||||||||||||||||||||||||||||||
Sbjct: 84079552 g-aggaaacaccttaggacggggaacgacaattac 84079519
Score = 396 bits (200), Expect = e-108
Identities = 214/221 (96%)
Strand = Plus / Minus
Query: 1 gtgtttcccgtcccccgcccgcgagtagtgggggtgaaaagcggcccgacctgcttgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84084090 gtgtttcccgtcccccgcccgcgagtagtgggggtgaaaagcggcccgacctgcttgggg 84084031
Query: 61 ggtagtgggcggatcgcacggcttgtggttgtgaggttctgagcccaggggannnnnnnc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 84084030 ggtagtgggcggatcgcacggcttgtggttgtgaggttctgagcccaggggagggggggc 84083971
Query: 121 ggaggtggctccttcgatcaaaggggacttgagactcaccggccgtgcgacatgagggcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84083970 ggaggtggctccttcgatcaaaggggacttgagactcaccggccgtgcgacatgagggcc 84083911
Query: 181 ctgtgggtgctgggcctgtgctgcgtcctgctgaccttcgg 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 84083910 ctgtgggtgctgggcctgtgctgcgtcctgctgaccttcgg 84083870
Score = 285 bits (144), Expect = 2e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 322 agagaggaagaagctattcaattggatggattaaatgcatcccaaataagagaacttaga 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84082051 agagaggaagaagctattcaattggatggattaaatgcatcccaaataagagaacttaga 84081992
Query: 382 gagaaatcagaaaaatttgccttccaagctgaagttaacagaatgatgaaacttatcatc 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84081991 gagaaatcagaaaaatttgccttccaagctgaagttaacagaatgatgaaacttatcatc 84081932
Query: 442 aattcattatataaaaataaagag 465
||||||||||||||||||||||||
Sbjct: 84081931 aattcattatataaaaataaagag 84081908
Score = 236 bits (119), Expect = 2e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 464 agattttcctaagagaactgatttcaaatgcttctgatgctttggataagataaggctaa 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84081340 agattttcctaagagaactgatttcaaatgcttctgatgctttggataagataaggctaa 84081281
Query: 524 tatcactgactgatgaaaatgctcttgctggaaatgaggagttaacggtcaaaattaag 582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84081280 tatcactgactgatgaaaatgctcttgctggaaatgaggagttaacggtcaaaattaag 84081222
Score = 190 bits (96), Expect = 1e-45
Identities = 102/104 (98%)
Strand = Plus / Minus
Query: 220 gggtctgtccgcgctgaggatgaagtggatgtggatgggacagtggaagaagatctgggt 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84082880 gggtctgtccgcgctgaggatgaagtggatgtggatgggacagtggaagaagatctgggt 84082821
Query: 280 aaaagtagagaaggttccaggacagacgatgaagtagtacagag 323
|||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 84082820 aaaagtagagaaagttccaggacagacgatgaagtaatacagag 84082777
>Sscrofa_Chr07
|| Length = 134764511
Score = 61.9 bits (31), Expect = 7e-07
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 743 tgattggccagttcggtgttggcttctattctgccttccttgtagcagataaagt 797
||||||| ||||| |||||||||||||||||||||| ||| || ||||| |||||
Sbjct: 45115619 tgattggacagtttggtgttggcttctattctgcctacctggtggcagagaaagt 45115673
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,522,125
Number of extensions: 331
Number of successful extensions: 331
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 6
Length of query: 1072
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1051
Effective length of database: 2,808,413,156
Effective search space: 2951642226956
Effective search space used: 2951642226956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)