Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007462
(680 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692835.1| PREDICTED: similar to Cytochrome c oxidase p... 133 1e-31
Alignment gi|XP_002701291.1| PREDICTED: similar to Cytochrome c oxidase p... 133 1e-31
Alignment gi|XP_002690425.1| PREDICTED: cytochrome c oxidase subunit VIc ... 133 2e-31
Alignment gi|XP_001250119.1| PREDICTED: cytochrome c oxidase subunit VIc ... 133 2e-31
Alignment gi|XP_002698835.1| PREDICTED: cytochrome c oxidase, subunit VIc... 127 7e-30
Alignment gi|XP_002703380.1| PREDICTED: cytochrome c oxidase, subunit VIc... 127 7e-30
Alignment gi|XP_002686706.1| PREDICTED: cytochrome c oxidase, subunit VIc... 123 2e-28
Alignment gi|XP_002704088.1| PREDICTED: cytochrome c oxidase, subunit VIc... 123 2e-28
>ref|XP_002692835.1| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2 [Bos
taurus].
Length = 74
Score = 133 bits (335), Expect = 1e-31
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 103 TSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDF 282
+++L KPQMRGLLA+RLRFHIVGAF+VSLG ATFYKFAVAE RKKAYADFYRNYDSMKDF
Sbjct: 2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDF 61
Query: 283 EEMRKAGIFQSAK 321
EEMRKAGIFQSAK
Sbjct: 62 EEMRKAGIFQSAK 74
>ref|XP_002701291.1| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2 [Bos
taurus].
Length = 74
Score = 133 bits (335), Expect = 1e-31
Identities = 65/73 (89%), Positives = 70/73 (95%)
Frame = +1
Query: 103 TSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDF 282
+++L KPQMRGLLA+RLRFHIVGAF+VSLG ATFYKFAVAE RKKAYADFYRNYDSMKDF
Sbjct: 2 STALAKPQMRGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADFYRNYDSMKDF 61
Query: 283 EEMRKAGIFQSAK 321
EEMRKAGIFQSAK
Sbjct: 62 EEMRKAGIFQSAK 74
>ref|XP_002690425.1| PREDICTED: cytochrome c oxidase subunit VIc [Bos taurus].
Length = 74
Score = 133 bits (334), Expect = 2e-31
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = +1
Query: 103 TSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDF 282
+++L KPQMRGLLAKRLRFHIVGAF+VSLG ATFYKFAV E RKKAYADFYRNYDSMKDF
Sbjct: 2 STALAKPQMRGLLAKRLRFHIVGAFMVSLGFATFYKFAVGEKRKKAYADFYRNYDSMKDF 61
Query: 283 EEMRKAGIFQSAK 321
EEMRKAGIFQSAK
Sbjct: 62 EEMRKAGIFQSAK 74
>ref|XP_001250119.1| PREDICTED: cytochrome c oxidase subunit VIc [Bos taurus].
Length = 74
Score = 133 bits (334), Expect = 2e-31
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = +1
Query: 103 TSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDF 282
+++L KPQMRGLLAKRLRFHIVGAF+VSLG ATFYKFAV E RKKAYADFYRNYDSMKDF
Sbjct: 2 STALAKPQMRGLLAKRLRFHIVGAFMVSLGFATFYKFAVGEKRKKAYADFYRNYDSMKDF 61
Query: 283 EEMRKAGIFQSAK 321
EEMRKAGIFQSAK
Sbjct: 62 EEMRKAGIFQSAK 74
>ref|XP_002698835.1| PREDICTED: cytochrome c oxidase, subunit VIc-like [Bos taurus].
Length = 74
Score = 127 bits (320), Expect = 7e-30
Identities = 62/73 (84%), Positives = 69/73 (94%)
Frame = +1
Query: 103 TSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDF 282
+++L KPQM GLLA+RL+FHIVGAF+VSLG ATFYKF+VAE RKKAYADFYRNYDSMKDF
Sbjct: 2 STALAKPQMCGLLARRLQFHIVGAFMVSLGFATFYKFSVAEKRKKAYADFYRNYDSMKDF 61
Query: 283 EEMRKAGIFQSAK 321
EEMRKAGIFQSAK
Sbjct: 62 EEMRKAGIFQSAK 74
>ref|XP_002703380.1| PREDICTED: cytochrome c oxidase, subunit VIc-like [Bos taurus].
Length = 74
Score = 127 bits (320), Expect = 7e-30
Identities = 62/73 (84%), Positives = 69/73 (94%)
Frame = +1
Query: 103 TSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDF 282
+++L KPQM GLLA+RL+FHIVGAF+VSLG ATFYKF+VAE RKKAYADFYRNYDSMKDF
Sbjct: 2 STALAKPQMCGLLARRLQFHIVGAFMVSLGFATFYKFSVAEKRKKAYADFYRNYDSMKDF 61
Query: 283 EEMRKAGIFQSAK 321
EEMRKAGIFQSAK
Sbjct: 62 EEMRKAGIFQSAK 74
>ref|XP_002686706.1| PREDICTED: cytochrome c oxidase, subunit VIc-like [Bos taurus].
Length = 221
Score = 123 bits (308), Expect = 2e-28
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +1
Query: 76 LSRRKITMATSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFY 255
+ +RK T+++SS TKPQM G LAK L+FHIVG FIVSLG ATF FA+AEP KKAYADFY
Sbjct: 141 IQKRKTTISSSS-TKPQMHGFLAKHLQFHIVGTFIVSLGTATFCNFAIAEPGKKAYADFY 199
Query: 256 RNYDSMKDFEEMRKAGIFQSAK 321
RNYDSMKDFE RKAGIFQSAK
Sbjct: 200 RNYDSMKDFEVKRKAGIFQSAK 221
>ref|XP_002704088.1| PREDICTED: cytochrome c oxidase, subunit VIc-like [Bos taurus].
Length = 221
Score = 123 bits (308), Expect = 2e-28
Identities = 62/82 (75%), Positives = 69/82 (84%)
Frame = +1
Query: 76 LSRRKITMATSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFY 255
+ +RK T+++SS TKPQM G LAK L+FHIVG FIVSLG ATF FA+AEP KKAYADFY
Sbjct: 141 IQKRKTTISSSS-TKPQMHGFLAKHLQFHIVGTFIVSLGTATFCNFAIAEPGKKAYADFY 199
Query: 256 RNYDSMKDFEEMRKAGIFQSAK 321
RNYDSMKDFE RKAGIFQSAK
Sbjct: 200 RNYDSMKDFEVKRKAGIFQSAK 221
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 19,956,558
Number of extensions: 532827
Number of successful extensions: 1257
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1257
Number of HSP's successfully gapped: 8
Length of query: 226
Length of database: 17,681,374
Length adjustment: 99
Effective length of query: 127
Effective length of database: 14,405,662
Effective search space: 1829519074
Effective search space used: 1829519074
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007462
(680 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856090.1| PREDICTED: similar to Cytochrome c oxidase poly... 140 8e-34
Alignment gi|XP_848419.1| PREDICTED: similar to Cytochrome c oxidase poly... 140 8e-34
>ref|XP_856090.1| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2
isoform 2 [Canis familiaris].
Length = 75
Score = 140 bits (354), Expect = 8e-34
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = +1
Query: 97 MATSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMK 276
M +S+LTKPQMRGLLAKRLRFHIVGAF VSLGVA FYKFAVAEPRKKAYADFYRNYDSMK
Sbjct: 1 MTSSALTKPQMRGLLAKRLRFHIVGAFAVSLGVAAFYKFAVAEPRKKAYADFYRNYDSMK 60
Query: 277 DFEEMRKAGIFQSAK 321
DFEEM+KAGIFQSAK
Sbjct: 61 DFEEMKKAGIFQSAK 75
>ref|XP_848419.1| PREDICTED: similar to Cytochrome c oxidase polypeptide VIc-2
isoform 1 [Canis familiaris].
Length = 75
Score = 140 bits (354), Expect = 8e-34
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = +1
Query: 97 MATSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMK 276
M +S+LTKPQMRGLLAKRLRFHIVGAF VSLGVA FYKFAVAEPRKKAYADFYRNYDSMK
Sbjct: 1 MTSSALTKPQMRGLLAKRLRFHIVGAFAVSLGVAAFYKFAVAEPRKKAYADFYRNYDSMK 60
Query: 277 DFEEMRKAGIFQSAK 321
DFEEM+KAGIFQSAK
Sbjct: 61 DFEEMKKAGIFQSAK 75
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 20,434,362
Number of extensions: 463523
Number of successful extensions: 1323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1323
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 18,874,504
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,574,240
Effective search space: 1977928480
Effective search space used: 1977928480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007462
(680 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004365.1| cytochrome c oxidase subunit 6C proprotein [Hom... 113 1e-25
>ref|NP_004365.1| cytochrome c oxidase subunit 6C proprotein [Homo sapiens].
Length = 75
Score = 113 bits (283), Expect = 1e-25
Identities = 56/75 (74%), Positives = 62/75 (82%)
Frame = +1
Query: 97 MATSSLTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMK 276
MA L KP+MRGLLA+RLR H+ AF++SLGVA YKF VA+ RKKAYADFYRNYD MK
Sbjct: 1 MAPEVLPKPRMRGLLARRLRNHMAVAFVLSLGVAALYKFRVADQRKKAYADFYRNYDVMK 60
Query: 277 DFEEMRKAGIFQSAK 321
DFEEMRKAGIFQS K
Sbjct: 61 DFEEMRKAGIFQSVK 75
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 20,030,134
Number of extensions: 456171
Number of successful extensions: 1354
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1354
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 18,297,164
Length adjustment: 99
Effective length of query: 127
Effective length of database: 15,033,728
Effective search space: 1909283456
Effective search space used: 1909283456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007462
(680 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_444301.1| cytochrome c oxidase subunit 6C [Mus musculus]. 125 2e-29
Alignment gi|XP_001473932.1| PREDICTED: cytochrome c oxidase subunit 6C-l... 122 2e-28
Alignment gi|XP_001478266.1| PREDICTED: cytochrome c oxidase subunit 6C-l... 122 2e-28
>ref|NP_444301.1| cytochrome c oxidase subunit 6C [Mus musculus].
Length = 76
Score = 125 bits (315), Expect = 2e-29
Identities = 62/70 (88%), Positives = 64/70 (91%)
Frame = +1
Query: 112 LTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDFEEM 291
L KPQMRGLLAKRLR HI GAFIV+LGVA YKF VAEPRKKAYA+FYRNYDSMKDFEEM
Sbjct: 7 LPKPQMRGLLAKRLRVHIAGAFIVALGVAAAYKFGVAEPRKKAYAEFYRNYDSMKDFEEM 66
Query: 292 RKAGIFQSAK 321
RKAGIFQSAK
Sbjct: 67 RKAGIFQSAK 76
>ref|XP_001473932.1| PREDICTED: cytochrome c oxidase subunit 6C-like [Mus musculus].
Length = 76
Score = 122 bits (307), Expect = 2e-28
Identities = 61/70 (87%), Positives = 63/70 (90%)
Frame = +1
Query: 112 LTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDFEEM 291
L KPQMRGLLAKRL HIVG FIV+LGVA YKF VAEPRKKAYA+FYRNYDSMKDFEEM
Sbjct: 7 LPKPQMRGLLAKRLWVHIVGTFIVALGVAAAYKFGVAEPRKKAYAEFYRNYDSMKDFEEM 66
Query: 292 RKAGIFQSAK 321
RKAGIFQSAK
Sbjct: 67 RKAGIFQSAK 76
>ref|XP_001478266.1| PREDICTED: cytochrome c oxidase subunit 6C-like [Mus musculus].
Length = 76
Score = 122 bits (307), Expect = 2e-28
Identities = 61/70 (87%), Positives = 63/70 (90%)
Frame = +1
Query: 112 LTKPQMRGLLAKRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSMKDFEEM 291
L KPQMRGLLAKRL HIVG FIV+LGVA YKF VAEPRKKAYA+FYRNYDSMKDFEEM
Sbjct: 7 LPKPQMRGLLAKRLWVHIVGTFIVALGVAAAYKFGVAEPRKKAYAEFYRNYDSMKDFEEM 66
Query: 292 RKAGIFQSAK 321
RKAGIFQSAK
Sbjct: 67 RKAGIFQSAK 76
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 17,086,838
Number of extensions: 388973
Number of successful extensions: 1070
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1070
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 15,617,559
Length adjustment: 98
Effective length of query: 128
Effective length of database: 12,674,031
Effective search space: 1622275968
Effective search space used: 1622275968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007462
(680 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090942.1| cytochrome c oxidase subunit 6C [Sus scrofa]. 134 3e-32
>ref|NP_001090942.1| cytochrome c oxidase subunit 6C [Sus scrofa].
Length = 76
Score = 134 bits (338), Expect = 3e-32
Identities = 70/76 (92%), Positives = 71/76 (93%), Gaps = 1/76 (1%)
Frame = +1
Query: 97 MATSSLTKPQMRGLLA-KRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSM 273
MATSSLTKPQMR +RLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSM
Sbjct: 1 MATSSLTKPQMRWPSGPRRLRFHIVGAFIVSLGVATFYKFAVAEPRKKAYADFYRNYDSM 60
Query: 274 KDFEEMRKAGIFQSAK 321
KDFEEMRKAGIFQSAK
Sbjct: 61 KDFEEMRKAGIFQSAK 76
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 13,643,715
Number of extensions: 466969
Number of successful extensions: 813
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 812
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 11,343,932
Length adjustment: 95
Effective length of query: 131
Effective length of database: 8,978,717
Effective search space: 1176211927
Effective search space used: 1176211927
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007462
(680 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 668 0.0
Sscrofa_Chr09 422 e-115
Sscrofa_Chr04 272 2e-70
gb|GL893880.2| Sus scrofa unplaced genomic scaffold ChrUScaf1765 161 6e-37
Sscrofa_Chr08 161 6e-37
Sscrofa_Chr13 157 9e-36
Sscrofa_Chr15 141 6e-31
Sscrofa_Chr01 88 7e-15
>Sscrofa_Chr12
|| Length = 63588571
Score = 668 bits (337), Expect = 0.0
Identities = 411/433 (94%), Gaps = 2/433 (0%)
Strand = Plus / Plus
Query: 37 tccatttctccgtcagtctgcaaggacgttgttgtggagctgtcaaggagaaaaattacc 96
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52261966 tccatttctccatcagtctgcaaggacgttgttgtggagctgtcaaggagaaaaattacc 52262025
Query: 97 atggctactagttctttgaccaaacctcagatgcgtggccttctggccaagcgtctgcga 156
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 52262026 atggctgctagttctttgaccaaacctcagatgcgtggccttctggccaagcatctgcga 52262085
Query: 157 tttcatattgttggagcattcattgtctcattgggggttgcaactttctataagtttgct 216
||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 52262086 tttcatattgttgaagcattcattgtctcattgagggttgcaactttatataagtttgct 52262145
Query: 217 gtggctgaaccaagaaagaaggcatacgcagatttctacagaaattatgattccatgaaa 276
||| |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 52262146 gtgactgaaccaagaaggaaagcatacgcagatttctacagaaattacgattccatgaaa 52262205
Query: 277 gattttgaggagatgaggaaggctggtatctttcagagtgcgaagtgattttggaatgta 336
|||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||
Sbjct: 52262206 gattttgaggagatgaggaaagctggcatctttcagagtacaaagtgattttggaatgta 52262265
Query: 337 aagaatttctttgggttgagttccatggaagtttgtcacttaaccattttcctgaactgt 396
||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct: 52262266 aagaagttctttgggttgagttccat-gaagtttgtcacttagctgttttcctgaactgt 52262324
Query: 397 g-aaactatgagctccaagtatctgggctaagaagtagtttctcttgataaataaacagt 455
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 52262325 gaaaactatgagcttcaagtatctgggctaagaagtagtttctcttgataaataaatagt 52262384
Query: 456 taacaaatactgt 468
|||||||||||||
Sbjct: 52262385 taacaaatactgt 52262397
Score = 228 bits (115), Expect = 3e-57
Identities = 222/257 (86%), Gaps = 8/257 (3%)
Strand = Plus / Minus
Query: 209 agtttgctgtggctgaaccaagaaagaaggcatacgcagatttctacagaaattatgatt 268
|||||||||||||||||||| |||||||| |||| ||||||||||||||| | |||||
Sbjct: 54967073 agtttgctgtggctgaaccaggaaagaagacataatgagatttctacagaaagtgtgatt 54967014
Query: 269 ccatgaaagattttgaggagatgaggaaggctggtatctttcagagtgcgaagtgatttt 328
|||| | ||||||||||||| ||| ||||||||||| ||| || ||||| ||||||||||
Sbjct: 54967013 ccataagagattttgaggagctgaagaaggctggtaactt-caaagtgcaaagtgatttt 54966955
Query: 329 ggaatgtaaagaatttctttgggttgagttccatggaagtttgtcacttaaccattttcc 388
|||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct: 54966954 ggaatgcaaagaatttctttgggttgaggtccatggaagtttgtcacttacgtatgttcc 54966895
Query: 389 tgaactgtgaaactatgagctccaagtatctgggctaagaagtagtttctcttgataaat 448
|||| ||||||||| || | ||||||||||||| | ||||||| ||| ||||||
Sbjct: 54966894 tgaaatgtgaaactctg-------aatatctgggctaaggaatagtttcgcttaataaat 54966842
Query: 449 aaacagttaacaaatac 465
|||||||||||||||||
Sbjct: 54966841 aaacagttaacaaatac 54966825
>Sscrofa_Chr09
|| Length = 153670197
Score = 422 bits (213), Expect = e-115
Identities = 338/377 (89%), Gaps = 2/377 (0%)
Strand = Plus / Plus
Query: 74 agctgtcaaggagaaaaattaccatggctactagttctttgaccaaacctcagatgcgtg 133
|||||||||| ||||||| ||| | |||| | ||||||||||| ||||||||||||||||
Sbjct: 29305856 agctgtcaagtagaaaaactactacggctgc-agttctttgacaaaacctcagatgcgtg 29305914
Query: 134 gccttctggccaagcgtctgcgatttcatattgttggagcattcattgtctcattggggg 193
||||||||||| || ||||| |||||||||||||||||||||||||||||| |||| |
Sbjct: 29305915 gccttctggcccagagtctgtgatttcatattgttggagcattcattgtctgtctgggag 29305974
Query: 194 ttgcaactttctataagtttgctgtggctgaaccaagaaagaaggcatacgcagatttct 253
||||| ||||||||||||||||||| |||||||||||||| |||||||| | ||||||||
Sbjct: 29305975 ttgcagctttctataagtttgctgtagctgaaccaagaaaaaaggcataagtagatttct 29306034
Query: 254 acagaaattatgattccatgaaagattttgaggagatgaggaaggctggtatctttcaga 313
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 29306035 gcagaaattatgattccatgaaagattttgaagagatgaggaaggctggtgtctttcaga 29306094
Query: 314 gtgcgaagtgattttggaatgtaaagaatttctttgggttgagttccatggaagtttgtc 373
|| | ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 29306095 gtacaaagtgatttgggaatgtaaagaatttctttgggttgagtttcatggaagtttgtc 29306154
Query: 374 acttaaccattttcctgaactgtgaaactatgagctccaagtatctgggctaagaagtag 433
|| ||| | ||||||||| |||||||||||||| | | || |||||||||| | |||
Sbjct: 29306155 -ctaaactgtgttcctgaaccttgaaactatgagcttcgaatagctgggctaaggaatag 29306213
Query: 434 tttctcttgataaataa 450
|||||||||||||||||
Sbjct: 29306214 tttctcttgataaataa 29306230
Score = 303 bits (153), Expect = 7e-80
Identities = 229/253 (90%), Gaps = 1/253 (0%)
Strand = Plus / Minus
Query: 74 agctgtcaaggagaaaaattaccatggctactagttctttgaccaaacctcagatgcgtg 133
|||||||||| ||||||| ||| | |||| | ||||||||||| ||||||||||||||||
Sbjct: 29566086 agctgtcaagtagaaaaactactacggctgc-agttctttgacaaaacctcagatgcgtg 29566028
Query: 134 gccttctggccaagcgtctgcgatttcatattgttggagcattcattgtctcattggggg 193
|||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| |
Sbjct: 29566027 gccttctggccaagagtctgtgatttcatattgttggagcattcattgtctgtctgggag 29565968
Query: 194 ttgcaactttctataagtttgctgtggctgaaccaagaaagaaggcatacgcagatttct 253
||||| ||||||||||||||||||| |||||||||||||| |||||||| | ||||||||
Sbjct: 29565967 ttgcagctttctataagtttgctgtagctgaaccaagaaaaaaggcataagtagatttct 29565908
Query: 254 acagaaattatgattccatgaaagattttgaggagatgaggaaggctggtatctttcaga 313
|||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||
Sbjct: 29565907 gcagaaattatgattccatgaaagattttaaagagatgaggaaggctggtgtctttcaga 29565848
Query: 314 gtgcgaagtgatt 326
|| | ||||||||
Sbjct: 29565847 gtacaaagtgatt 29565835
Score = 123 bits (62), Expect = 1e-25
Identities = 165/198 (83%), Gaps = 1/198 (0%)
Strand = Plus / Plus
Query: 119 aacctcagatgcgtggccttctggccaagcgtctgcgatttcatattgttggagcattca 178
|||||||||||| |||| |||||||||||| ||| | |||||||||||||| ||||||
Sbjct: 108002369 aacctcagatgcatggctttctggccaagcatctttggtttcatattgttggctcattca 108002428
Query: 179 ttgtctcattgggggttgcaactttctataagtttgctgtggctgaaccaagaaagaagg 238
|||| || |||||||||| | ||||| || ||||||||||||||||||||||||||||
Sbjct: 108002429 ttgtatcccagggggttgcagccttctaaaa-tttgctgtggctgaaccaagaaagaagg 108002487
Query: 239 catacgcagatttctacagaaattatgattccatgaaagattttgaggagatgaggaagg 298
|| | ||||| ||||| |||||| || |||| | | || ||||||||| |||| ||| |
Sbjct: 108002488 cacaagcagagttctatagaaatgataattctgtcagaggttttgaggaaatgaagaaag 108002547
Query: 299 ctggtatctttcagagtg 316
|| ||| |||||| ||||
Sbjct: 108002548 ctagtagctttcacagtg 108002565
>Sscrofa_Chr04
|| Length = 143465943
Score = 272 bits (137), Expect = 2e-70
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 74 agctgtcaaggagaaaaattaccatggctactagttctttgaccaaacctcagatgcgtg 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39992178 agctgtcaaggagaaaaattaccatggctactagttctttgaccaaacctcagatgcgtg 39992237
Query: 134 gccttctggccaagcgtctgcgatttcatattgttggagcattcattgtctcattggggg 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39992238 gccttctggccaagcgtctgcgatttcatattgttggagcattcattgtctcattggggg 39992297
Query: 194 ttgcaactttctataag 210
|||||||||||||||||
Sbjct: 39992298 ttgcaactttctataag 39992314
Score = 260 bits (131), Expect = 9e-67
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 209 agtttgctgtggctgaaccaagaaagaaggcatacgcagatttctacagaaattatgatt 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39992917 agtttgctgtggctgaaccaagaaagaaggcatacgcagatttctacagaaattatgatt 39992976
Query: 269 ccatgaaagattttgaggagatgaggaaggctggtatctttcagagtgcgaagtgatttt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39992977 ccatgaaagattttgaggagatgaggaaggctggtatctttcagagtgcgaagtgatttt 39993036
Query: 329 ggaatgtaaag 339
|||||||||||
Sbjct: 39993037 ggaatgtaaag 39993047
Score = 260 bits (131), Expect = 9e-67
Identities = 131/131 (100%)
Strand = Plus / Plus
Query: 338 agaatttctttgggttgagttccatggaagtttgtcacttaaccattttcctgaactgtg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40005638 agaatttctttgggttgagttccatggaagtttgtcacttaaccattttcctgaactgtg 40005697
Query: 398 aaactatgagctccaagtatctgggctaagaagtagtttctcttgataaataaacagtta 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40005698 aaactatgagctccaagtatctgggctaagaagtagtttctcttgataaataaacagtta 40005757
Query: 458 acaaatactgt 468
|||||||||||
Sbjct: 40005758 acaaatactgt 40005768
Score = 174 bits (88), Expect = 4e-41
Identities = 160/179 (89%), Gaps = 5/179 (2%)
Strand = Plus / Plus
Query: 200 ctttctataagtttgctgtggctgaaccaagaaagaaggcatacgcagatttctacagaa 259
||||||||||||||||||| |||||| ||| | ||| |||| | ||||||||||||||||
Sbjct: 96997932 ctttctataagtttgctgtagctgaatcaaaagaga-ggcacatgcagatttctacagaa 96997990
Query: 260 attatgattccatgaaagatttt-gaggagatgaggaaggctggtatctttcagagtgcg 318
| | |||||||||| ||||||| ||||| ||||||||||||| ||| ||||| |||||
Sbjct: 96997991 act--gattccatgagagatttttgaggaaatgaggaaggctgctatttttcaaagtgca 96998048
Query: 319 aagtgattttggaatgtaaagaatttctttggg-ttgagttccatggaagtttgtcact 376
||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 96998049 aagtgattttggaatgtaaagaatttcttggggtttgagttccatggaagtttgtcact 96998107
Score = 131 bits (66), Expect = 5e-28
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 2 ctttatctttgcgcctgcgcggggctggaagcccgtccatttctccgtcagtctgcaagg 61
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 39991025 ctttatctttgcgcctgcgcggtgctggaaccccgtccatttctccgtcagtctgcaagg 39991084
Query: 62 acgttgttgtggag 75
||||||||||||||
Sbjct: 39991085 acgttgttgtggag 39991098
>gb|GL893880.2| Sus scrofa unplaced genomic scaffold ChrUScaf1765
Length = 130069
Score = 161 bits (81), Expect = 6e-37
Identities = 278/342 (81%), Gaps = 5/342 (1%)
Strand = Plus / Minus
Query: 41 tttctccgtcagtctgcaaggacgttgttgtggagctgtcaaggagaaaaattaccatgg 100
||||||| |||||||| ||||||||||| ||||| |||||||||||||||| |||| ||
Sbjct: 47907 tttctccatcagtctggaaggacgttgtggtggaactgtcaaggagaaaaacgaccacgg 47848
Query: 101 ctactagttctttgaccaaacctcagatgcgtggccttctggccaagcgtctgcgatttc 160
|| | ||||||||||| ||||| |||| ||||||||||||||||||| |||| |||
Sbjct: 47847 cttccagttctttgacaaaaccccagacacgtggccttctggccaagcacctgcactttg 47788
Query: 161 atattgttggagc----attcattgtctcattgggggttgcaactttctataagtttgct 216
||||||||| ||||||| | | |||| ||||| |||| ||| || |||
Sbjct: 47787 gcggtgttggagcgagcattcattttacccctgggatgtgcaatgttctgtaatttcgct 47728
Query: 217 gtggctgaaccaagaaagaaggcatacgcagatttctacagaaattatgattccatgaaa 276
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||| |||
Sbjct: 47727 gtggctgaaccaagcaagaaagtgcatgcagatttctacagaaattatgattccataaaa 47668
Query: 277 gattttgaggagatgaggaaggctggtatctttcagagtgcgaagtgattttggaatgta 336
||| | ||||||||| ||||||||||| |||||||||| | | |||||| | || |||
Sbjct: 47667 gatgtggaggagatggggaaggctggtctctttcagag-gggcagtgatgtgggggtgtc 47609
Query: 337 aagaatttctttgggttgagttccatggaagtttgtcactta 378
|||| ||||||||||||| ||| ||||| || |||| |||||
Sbjct: 47608 aagagtttctttgggttgtgtttcatggcagcttgttactta 47567
>Sscrofa_Chr08
|| Length = 148491826
Score = 161 bits (81), Expect = 6e-37
Identities = 278/342 (81%), Gaps = 5/342 (1%)
Strand = Plus / Plus
Query: 41 tttctccgtcagtctgcaaggacgttgttgtggagctgtcaaggagaaaaattaccatgg 100
||||||| |||||||| ||||||||||| ||||| |||||||||||||||| |||| ||
Sbjct: 141026127 tttctccatcagtctggaaggacgttgtggtggaactgtcaaggagaaaaacgaccacgg 141026186
Query: 101 ctactagttctttgaccaaacctcagatgcgtggccttctggccaagcgtctgcgatttc 160
|| | ||||||||||| ||||| |||| ||||||||||||||||||| |||| |||
Sbjct: 141026187 cttccagttctttgacaaaaccccagacacgtggccttctggccaagcacctgcactttg 141026246
Query: 161 atattgttggagc----attcattgtctcattgggggttgcaactttctataagtttgct 216
||||||||| ||||||| | | |||| ||||| |||| ||| || |||
Sbjct: 141026247 gcggtgttggagcgagcattcattttacccctgggatgtgcaatgttctgtaatttcgct 141026306
Query: 217 gtggctgaaccaagaaagaaggcatacgcagatttctacagaaattatgattccatgaaa 276
|||||||||||||| ||||| | | ||||||||||||||||||||||||||||| |||
Sbjct: 141026307 gtggctgaaccaagcaagaaagtgcatgcagatttctacagaaattatgattccataaaa 141026366
Query: 277 gattttgaggagatgaggaaggctggtatctttcagagtgcgaagtgattttggaatgta 336
||| | ||||||||| ||||||||||| |||||||||| | | |||||| | || |||
Sbjct: 141026367 gatgtggaggagatggggaaggctggtctctttcagag-gggcagtgatgtgggggtgtc 141026425
Query: 337 aagaatttctttgggttgagttccatggaagtttgtcactta 378
|||| ||||||||||||| ||| ||||| || |||| |||||
Sbjct: 141026426 aagagtttctttgggttgtgtttcatggcagcttgttactta 141026467
>Sscrofa_Chr13
|| Length = 218635234
Score = 157 bits (79), Expect = 9e-36
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 245 cagatttctacagaaattatgattccatgaaagattttgaggagatgaggaaggctggta 304
||||||||||||||||| ||||| ||||||||||||| |||| |||||||||||| |
Sbjct: 20024218 cagatttctacagaaataatgatgccatgaaagatttcaaggaagtgaggaaggctgttg 20024159
Query: 305 tctttcagagtgcgaagtgattttggaatgtaaagaatttctttgggttgagttccatgg 364
|||||||| |||| |||||||||| |||||| |||||||||||||||| |||||||||||
Sbjct: 20024158 tctttcagggtgcaaagtgattttagaatgtgaagaatttctttgggtagagttccatgg 20024099
Query: 365 aagtttgtcac 375
|||||||||||
Sbjct: 20024098 aagtttgtcac 20024088
>Sscrofa_Chr15
|| Length = 157681621
Score = 141 bits (71), Expect = 6e-31
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 278 attttgaggagatgaggaaggctggtatctttcagagtgcgaagtgattttggaatgtaa 337
|||||||||| ||||||||||||||| ||||||||||||| || |||||||||||| |||
Sbjct: 94606850 attttgaggacatgaggaaggctggtttctttcagagtgcaaaatgattttggaatataa 94606909
Query: 338 agaatttctttgggttgagttccatggaagtttgtcacttaaccattttcctgaactgtg 397
| ||| ||||||||||||||||||| ||||||||||||||| | | |||||||||| ||
Sbjct: 94606910 ataatatctttgggttgagttccattgaagtttgtcacttacctgtgttcctgaactatg 94606969
Query: 398 aaa 400
|||
Sbjct: 94606970 aaa 94606972
>Sscrofa_Chr01
|| Length = 315321322
Score = 87.7 bits (44), Expect = 7e-15
Identities = 137/167 (82%), Gaps = 2/167 (1%)
Strand = Plus / Plus
Query: 119 aacctcagatgcgtggccttctggccaagcgtctgcgatttcatattgttggagcattca 178
|||||||||||| || | ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 37131719 aacctcagatgcatgactttctggccaagaatctgtgatttcatattgttggagcattcg 37131778
Query: 179 ttgtctcattgggggttgcaactttctataagtttgctgtggctgaaccaagaaagaagg 238
||| || ||||| ||||| || ||| | ||||||| || ||||||| | || |||||
Sbjct: 37131779 ctgtttccctggggattgcagctctctgt--gtttgctctgactgaacccataaggaagg 37131836
Query: 239 catacgcagatttctacagaaattatgattccatgaaagattttgag 285
||||| ||| ||||| ||||| |||||||| || |||||||||||
Sbjct: 37131837 catacacagctttctgcagaagccatgattccctggaagattttgag 37131883
Score = 87.7 bits (44), Expect = 7e-15
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 321 gtgattttggaatgtaaagaatttctttgggttgagttccatggaagtttgtcact 376
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||
Sbjct: 37132187 gtgattttggaatgtaaagaatttctttggattgagttctatgaaagtttgtcact 37132242
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,250,456
Number of extensions: 446
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 21
Length of query: 680
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 659
Effective length of database: 2,808,413,156
Effective search space: 1850744269804
Effective search space used: 1850744269804
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 17 (34.2 bits)
S2: 29 (58.0 bits)