Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007463
(1728 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029494.1| peptidyl-prolyl cis-trans isomerase FKBP4 [B... 812 0.0
Alignment gi|NP_001179791.1| peptidyl-prolyl cis-trans isomerase FKBP5 [B... 493 e-139
Alignment gi|XP_002697247.1| PREDICTED: FK506 binding protein 5 [Bos taur... 493 e-139
Alignment gi|NP_001030533.1| peptidyl-prolyl cis-trans isomerase FKBP1A [... 106 7e-23
Alignment gi|NP_001071437.1| FK506-binding protein 1A-like [Bos taurus]. 104 2e-22
Alignment gi|XP_002686244.1| PREDICTED: FKBP1A protein-like [Bos taurus]. 103 5e-22
Alignment gi|XP_587992.2| PREDICTED: FKBP1A protein-like [Bos taurus]. 103 5e-22
Alignment gi|NP_001091627.1| peptidyl-prolyl cis-trans isomerase FKBP1B [... 99 9e-21
Alignment gi|NP_001032558.1| peptidyl-prolyl cis-trans isomerase FKBP2 is... 91 2e-18
Alignment gi|NP_001033201.1| peptidyl-prolyl cis-trans isomerase FKBP3 [B... 91 2e-18
>ref|NP_001029494.1| peptidyl-prolyl cis-trans isomerase FKBP4 [Bos taurus].
Length = 459
Score = 812 bits (2098), Expect = 0.0
Identities = 405/455 (89%), Positives = 427/455 (93%), Gaps = 3/455 (0%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MTAEETK AE+GAQSAPL LEGVDISPKQDEGVLKVIKREGTGTE PMIGDRV VHYTGW
Sbjct: 1 MTAEETKAAESGAQSAPLRLEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGW 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
LLDGTKFDSSLDRKD+FSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYG AGSPP
Sbjct: 61 LLDGTKFDSSLDRKDRFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGLAGSPP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRI+TRGEGYA+PN+GA+VEVALEGY+KD
Sbjct: 121 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKD 180
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
Q+FDRRE+RFEVGEGE+MDLPCGLEKAIQRMEKGEHSIVYLKP YAFGSAGKEKF IPPN
Sbjct: 181 QVFDRRELRFEVGEGESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSAGKEKFQIPPN 240
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AELKYE+HLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQA++QYKKIVSWL
Sbjct: 241 AELKYEIHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWL 300
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
EYESSFS+EDA+KAQALRLASHLNLAMC+LKLQ+FSAAIENCNKALELDSNNEKGLFRRG
Sbjct: 301 EYESSFSDEDAEKAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRG 360
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EAHLAVNDFDLARADFQKVLQLYPSN RIRKQL +EKKLYANMFERLAE
Sbjct: 361 EAHLAVNDFDLARADFQKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERLAE 420
Query: 1371 EESKAK---VSGDQQADTEMKEEQKNDVAGRQPQV 1466
EE+KAK +GDQ AD EM++E KNDVAG QPQV
Sbjct: 421 EETKAKATVAAGDQPADAEMRDEPKNDVAGGQPQV 455
>ref|NP_001179791.1| peptidyl-prolyl cis-trans isomerase FKBP5 [Bos taurus].
Length = 457
Score = 493 bits (1270), Expect = e-139
Identities = 243/428 (56%), Positives = 316/428 (73%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR G E PMIGD+V VHY G
Sbjct: 1 MTTDEAAKNNGESPAAAVAEQGEDITSKKDRGVLKIVKRVGNSEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSTGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E DGGIIRRI+ +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DGGIIRRIKRKGEGYSNPNEGATVEIHLEGRCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
+ FD R++ F VGEGE D+P G++KA+++M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RTFDCRDVGFIVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE+GTVYFK GKY QA++QY KIVSWL
Sbjct: 239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ A+E C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +N+F+ A+ DF+KVL++ P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418
Query: 1371 EESKAKVS 1394
+++K + S
Sbjct: 419 QDAKEEAS 426
>ref|XP_002697247.1| PREDICTED: FK506 binding protein 5 [Bos taurus].
Length = 457
Score = 493 bits (1270), Expect = e-139
Identities = 243/428 (56%), Positives = 316/428 (73%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR G E PMIGD+V VHY G
Sbjct: 1 MTTDEAAKNNGESPAAAVAEQGEDITSKKDRGVLKIVKRVGNSEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSTGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E DGGIIRRI+ +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DGGIIRRIKRKGEGYSNPNEGATVEIHLEGRCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
+ FD R++ F VGEGE D+P G++KA+++M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RTFDCRDVGFIVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE+GTVYFK GKY QA++QY KIVSWL
Sbjct: 239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ A+E C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +N+F+ A+ DF+KVL++ P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418
Query: 1371 EESKAKVS 1394
+++K + S
Sbjct: 419 QDAKEEAS 426
>ref|NP_001030533.1| peptidyl-prolyl cis-trans isomerase FKBP1A [Bos taurus].
Length = 108
Score = 106 bits (264), Expect = 7e-23
Identities = 52/98 (53%), Positives = 62/98 (63%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 11 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPPNATL+F+VEL + +
Sbjct: 71 QRAKLTISPDYAYGATGHPGIIPPNATLIFDVELLKLE 108
>ref|NP_001071437.1| FK506-binding protein 1A-like [Bos taurus].
Length = 108
Score = 104 bits (260), Expect = 2e-22
Identities = 50/98 (51%), Positives = 62/98 (63%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK +VI+ W+ +A M +G
Sbjct: 11 GDGRTFPKHGQTCVVHYTGTLEDGKKFDSSRDRNKPFKFVLGKKQVIRGWEEGIAQMSIG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYGS G P IPPNATL+F+VEL + +
Sbjct: 71 QRAKLTVSPDYAYGSRGHPGIIPPNATLIFDVELLKLE 108
>ref|XP_002686244.1| PREDICTED: FKBP1A protein-like [Bos taurus].
Length = 166
Score = 103 bits (257), Expect = 5e-22
Identities = 51/98 (52%), Positives = 61/98 (62%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 69 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEWVAQMSVG 128
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPPNATL+F+VE + +
Sbjct: 129 QRAKLTISPDYAYGATGHPGIIPPNATLIFDVEFLKLE 166
>ref|XP_587992.2| PREDICTED: FKBP1A protein-like [Bos taurus].
Length = 166
Score = 103 bits (257), Expect = 5e-22
Identities = 51/98 (52%), Positives = 61/98 (62%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 69 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEWVAQMSVG 128
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPPNATL+F+VE + +
Sbjct: 129 QRAKLTISPDYAYGATGHPGIIPPNATLIFDVEFLKLE 166
>ref|NP_001091627.1| peptidyl-prolyl cis-trans isomerase FKBP1B [Bos taurus].
Length = 108
Score = 99.4 bits (246), Expect = 9e-21
Identities = 48/98 (48%), Positives = 60/98 (61%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L +G KFDSS DR F F +GK EVIK ++ A M +G
Sbjct: 11 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +TC P+ AYG+ G P IPPNATL+F+VEL +
Sbjct: 71 QRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 108
>ref|NP_001032558.1| peptidyl-prolyl cis-trans isomerase FKBP2 isoform 2 [Bos taurus].
Length = 140
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|NP_001033201.1| peptidyl-prolyl cis-trans isomerase FKBP3 [Bos taurus].
Length = 224
Score = 91.3 bits (225), Expect = 2e-18
Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Frame = +3
Query: 189 PKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDK-------FSF 347
PK + VLK +G T P GD V YTG L DGT FD+++ K SF
Sbjct: 109 PKYTKSVLK----KGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKNAKPLSF 164
Query: 348 DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSP-PKIPPNATLVFEVELFE 518
+G G+VI+ WD A+ TM GE + +PE+AYG G P KIPPNA L+FEVEL +
Sbjct: 165 KVGIGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVD 222
Score = 50.4 bits (119), Expect = 5e-06
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Frame = +3
Query: 516 EFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD-QIFDR--------- 665
E K E+ +E + + +G+ P G +V G +D +FD
Sbjct: 97 ETKSEETLDEGPPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKK 156
Query: 666 ---REIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAE 836
+ + F+VG G+ + G ++A+ M KGE + + ++P +A+G G+ IPPNA+
Sbjct: 157 KNAKPLSFKVGIGKVIR---GWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAK 213
Query: 837 LKYEVHL 857
L +EV L
Sbjct: 214 LIFEVEL 220
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,530,443
Number of extensions: 1497928
Number of successful extensions: 6584
Number of sequences better than 1.0e-05: 55
Number of HSP's gapped: 6500
Number of HSP's successfully gapped: 68
Length of query: 576
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 468
Effective length of database: 14,107,870
Effective search space: 6602483160
Effective search space used: 6602483160
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007463
(1728 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534923.1| PREDICTED: similar to FK506-binding protein 4 (... 820 0.0
Alignment gi|XP_538880.2| PREDICTED: similar to FK506-binding protein 5 (... 493 e-139
Alignment gi|XP_851390.1| PREDICTED: similar to FK506-binding protein 1A ... 106 6e-23
Alignment gi|XP_853461.1| PREDICTED: similar to FK506-binding protein 1B ... 99 1e-20
Alignment gi|XP_546928.2| PREDICTED: similar to FK506-binding protein 6 (... 92 2e-18
Alignment gi|XP_867180.1| PREDICTED: similar to FK506-binding protein 2 p... 91 3e-18
Alignment gi|XP_540885.2| PREDICTED: similar to FK506-binding protein 2 p... 91 3e-18
Alignment gi|XP_867164.1| PREDICTED: similar to FK506-binding protein 2 p... 91 3e-18
Alignment gi|XP_853295.1| PREDICTED: similar to FK506-binding protein 2 p... 91 3e-18
Alignment gi|XP_537428.1| PREDICTED: similar to FK506-binding protein 3 (... 91 3e-18
>ref|XP_534923.1| PREDICTED: similar to FK506-binding protein 4 (Peptidyl-prolyl
cis-trans isomerase) (PPIase) (Rotamase) (p59 protein)
(HSP binding immunophilin) (HBI) (FKBP52 protein) (52 kDa
FK506 binding protein) (FKBP59) [Canis familiaris].
Length = 459
Score = 820 bits (2117), Expect = 0.0
Identities = 406/455 (89%), Positives = 429/455 (94%), Gaps = 3/455 (0%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MTAEE K AE+GAQSAPLPLEGVD+SPKQDEGVLKVIKREGTGTEMPMIGDRV VHYTGW
Sbjct: 1 MTAEEMKAAESGAQSAPLPLEGVDVSPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGW 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAV TMKVGEVCHITCKPEYAYGSAGSPP
Sbjct: 61 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVGTMKVGEVCHITCKPEYAYGSAGSPP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIPPNATLVFEVELFEF+GEDLTEEEDGGIIRRI+TRGEGYARPN+GAIV+V LEGYYKD
Sbjct: 121 KIPPNATLVFEVELFEFRGEDLTEEEDGGIIRRIRTRGEGYARPNEGAIVDVTLEGYYKD 180
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
Q+FD+RE+RFEVGEGE++DLPCGLEKAIQRMEKGEHSIVYLKPSYAFGS GK+KF IPPN
Sbjct: 181 QMFDQRELRFEVGEGESLDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSVGKDKFQIPPN 240
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AELKYE+HLKSFEKAKESWEM+SEEKLEQSTIVKERGTVYFKEGKYKQAL+QYKKI+SWL
Sbjct: 241 AELKYEIHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIISWL 300
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
EYESSFSNEDAQKAQALRLASHLNLAMC+LKLQ+FSAA+E+CNKALELDSNNEKGLFRRG
Sbjct: 301 EYESSFSNEDAQKAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRG 360
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EAHLAVNDFDLARADFQKVLQLYPSN RIRKQLAREKKLYANMFERLAE
Sbjct: 361 EAHLAVNDFDLARADFQKVLQLYPSNKAAKAQLAVCQQRIRKQLAREKKLYANMFERLAE 420
Query: 1371 EESKAK---VSGDQQADTEMKEEQKNDVAGRQPQV 1466
EESKAK +G+ ADTEMK+EQKNDVAG QPQV
Sbjct: 421 EESKAKAAVAAGNHHADTEMKDEQKNDVAGSQPQV 455
>ref|XP_538880.2| PREDICTED: similar to FK506-binding protein 5 (Peptidyl-prolyl
cis-trans isomerase) (PPIase) (Rotamase) (51 kDa
FK506-binding protein) (FKBP-51) (54 kDa progesterone
receptor-associated immunophilin) (FKBP54) (P54) (FF1
antigen) (HSP90-binding immunophilin) (... [Canis
familiaris].
Length = 456
Score = 493 bits (1269), Expect = e-139
Identities = 247/453 (54%), Positives = 327/453 (72%), Gaps = 12/453 (2%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E +A + G DI+ K+D GVLK++KR G E PMIGD+V VHY G
Sbjct: 1 MTTDEGAKNSGENPAAAVAERGEDITSKKDRGVLKIVKRVGNSEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L +G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E DGGIIRRI+ +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DGGIIRRIKQKGEGYSNPNEGATVEIHLEGRCDG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
++FD R++ F VGEGE D+P G++KA+++M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RMFDCRDVVFIVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE+GTVYFK GKY QA++QY KIVSWL
Sbjct: 239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ AIE C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAIECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +N+F+ A+ DF+KVL++ P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418
Query: 1371 EESKAK------------VSGDQQADTEMKEEQ 1433
+++K + V+ +++A+++ EE+
Sbjct: 419 QDAKEEASKAMGKKTLEGVTNEKEAESQATEEK 451
>ref|XP_851390.1| PREDICTED: similar to FK506-binding protein 1A [Canis familiaris].
Length = 109
Score = 106 bits (265), Expect = 6e-23
Identities = 53/98 (54%), Positives = 62/98 (63%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 12 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 71
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPPNATLVF+VEL + +
Sbjct: 72 QRAKLTISPDYAYGATGHPGIIPPNATLVFDVELLKLE 109
>ref|XP_853461.1| PREDICTED: similar to FK506-binding protein 1B isoform a [Canis
familiaris].
Length = 108
Score = 99.4 bits (246), Expect = 1e-20
Identities = 48/98 (48%), Positives = 60/98 (61%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L +G KFDSS DR F F +GK EVIK ++ A M +G
Sbjct: 11 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +TC P+ AYG+ G P IPPNATL+F+VEL +
Sbjct: 71 QRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 108
>ref|XP_546928.2| PREDICTED: similar to FK506-binding protein 6 (Peptidyl-prolyl
cis-trans isomerase) (PPIase) (Rotamase) (36 kDa FK506
binding protein) (FKBP-36) (Immunophilin FKBP36) [Canis
familiaris].
Length = 327
Score = 91.7 bits (226), Expect = 2e-18
Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 18/287 (6%)
Frame = +3
Query: 549 DGGIIRRIQTRGEGYARPNDGAIVEVALEGY--YKDQIFDRREIR-----FEVGEGETMD 707
D G+++ + G G D +++ V GY + D+ FD R ++GE T+
Sbjct: 35 DRGVLKDVIREGAGELVTPDASVL-VKYSGYLEHMDKPFDSNCFRKTPRLMKLGEDITL- 92
Query: 708 LPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESW 887
G+E + M +GE + KP+YA+G+ G IPPN + +E+ L F + ES
Sbjct: 93 --WGMELGLLSMRRGELARFLFKPTYAYGTLGCPPL-IPPNTTVLFEIELLDFLDSAESD 149
Query: 888 E---MSSEEK--------LEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSN 1034
+ +S+E++ L+ + +E G F++ ++ A V+YK+ + L S+
Sbjct: 150 KFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRALLLLHRRSA-PP 208
Query: 1035 EDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVND 1214
E+ +A +L LNL+ YL+L+ + A+ +AL +D N K LFR G+A L + +
Sbjct: 209 EEQHLVEAAKLLVLLNLSFTYLRLERPTTALRYGEQALLIDQKNAKALFRCGQACLFMTE 268
Query: 1215 FDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMF 1355
++ AR + + P N R +EK++ MF
Sbjct: 269 YEKARDFLVRAQKEQPFNHDINNELKKLASYYRDYTDKEKEMCHRMF 315
Score = 78.6 bits (192), Expect = 2e-14
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Frame = +3
Query: 105 GAMTAEETKTAENGAQSAP---LPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSV 275
G+ + +N + +P L +DIS D GVLK + REG G E+ V V
Sbjct: 3 GSTRSPRVLQGDNASGQSPYERLSRRMLDISG--DRGVLKDVIREGAG-ELVTPDASVLV 59
Query: 276 HYTGWLLDGTK-FDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYG 452
Y+G+L K FDS+ RK LG+ + ++ + +M+ GE+ KP YAYG
Sbjct: 60 KYSGYLEHMDKPFDSNCFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPTYAYG 119
Query: 453 SAGSPPKIPPNATLVFEVELFEF 521
+ G PP IPPN T++FE+EL +F
Sbjct: 120 TLGCPPLIPPNTTVLFEIELLDF 142
>ref|XP_867180.1| PREDICTED: similar to FK506-binding protein 2 precursor
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) (13 kDa FKBP) (FKBP-13) isoform 4 [Canis
familiaris].
Length = 140
Score = 91.3 bits (225), Expect = 3e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|XP_540885.2| PREDICTED: similar to FK506-binding protein 2 precursor
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) (13 kDa FKBP) (FKBP-13) isoform 1 [Canis
familiaris].
Length = 140
Score = 91.3 bits (225), Expect = 3e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|XP_867164.1| PREDICTED: similar to FK506-binding protein 2 precursor
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) (13 kDa FKBP) (FKBP-13) isoform 3 [Canis
familiaris].
Length = 132
Score = 91.3 bits (225), Expect = 3e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 39 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 98
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 99 ELGYGERGAPPKIPGGATLVFEVELLKIE 127
>ref|XP_853295.1| PREDICTED: similar to FK506-binding protein 2 precursor
(Peptidyl-prolyl cis-trans isomerase) (PPIase)
(Rotamase) (13 kDa FKBP) (FKBP-13) isoform 2 [Canis
familiaris].
Length = 161
Score = 91.3 bits (225), Expect = 3e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 68 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 127
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 128 ELGYGERGAPPKIPGGATLVFEVELLKIE 156
>ref|XP_537428.1| PREDICTED: similar to FK506-binding protein 3 (Peptidyl-prolyl
cis-trans isomerase) (PPIase) (Rotamase) (25 kDa FKBP)
(FKBP-25) (Rapamycin-selective 25 kDa immunophilin)
isoform 1 [Canis familiaris].
Length = 224
Score = 91.3 bits (225), Expect = 3e-18
Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Frame = +3
Query: 189 PKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDK-------FSF 347
PK + VLK +G T P GD V YTG L DGT FD+++ K SF
Sbjct: 109 PKYTKSVLK----KGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKNAKPLSF 164
Query: 348 DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSP-PKIPPNATLVFEVELFE 518
+G G+VI+ WD A+ TM GE + +PE+AYG G P KIPPNA L+FEVEL +
Sbjct: 165 KVGIGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVD 222
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 60,179,038
Number of extensions: 1553733
Number of successful extensions: 6941
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 6834
Number of HSP's successfully gapped: 53
Length of query: 576
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 468
Effective length of database: 15,274,216
Effective search space: 7148333088
Effective search space used: 7148333088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007463
(1728 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002005.1| peptidyl-prolyl cis-trans isomerase FKBP4 [Homo... 804 0.0
Alignment gi|NP_001139248.1| peptidyl-prolyl cis-trans isomerase FKBP5 is... 497 e-140
Alignment gi|NP_001139247.1| peptidyl-prolyl cis-trans isomerase FKBP5 is... 497 e-140
Alignment gi|NP_004108.1| peptidyl-prolyl cis-trans isomerase FKBP5 isofo... 497 e-140
Alignment gi|NP_001139249.1| peptidyl-prolyl cis-trans isomerase FKBP5 is... 266 4e-71
Alignment gi|NP_000792.1| peptidyl-prolyl cis-trans isomerase FKBP1A isof... 104 2e-22
Alignment gi|NP_463460.1| peptidyl-prolyl cis-trans isomerase FKBP1A isof... 104 2e-22
Alignment gi|NP_004107.1| peptidyl-prolyl cis-trans isomerase FKBP1B isof... 99 9e-21
Alignment gi|NP_001128683.1| peptidyl-prolyl cis-trans isomerase FKBP6 is... 92 2e-18
Alignment gi|NP_003593.3| peptidyl-prolyl cis-trans isomerase FKBP6 isofo... 92 2e-18
>ref|NP_002005.1| peptidyl-prolyl cis-trans isomerase FKBP4 [Homo sapiens].
Length = 459
Score = 804 bits (2077), Expect = 0.0
Identities = 400/455 (87%), Positives = 425/455 (93%), Gaps = 3/455 (0%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MTAEE K E+GAQSAPLP+EGVDISPKQDEGVLKVIKREGTGTEMPMIGDRV VHYTGW
Sbjct: 1 MTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGW 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIA+ATMKVGEVCHITCKPEYAYGSAGSPP
Sbjct: 61 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYA+PN+GAIVEVALEGYYKD
Sbjct: 121 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKD 180
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
++FD+RE+RFE+GEGE +DLP GLE+AIQRMEKGEHSIVYLKPSYAFGS GKEKF IPPN
Sbjct: 181 KLFDQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPN 240
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AELKYE+HLKSFEKAKESWEM+SEEKLEQSTIVKERGTVYFKEGKYKQAL+QYKKIVSWL
Sbjct: 241 AELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL 300
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
EYESSFSNE+AQKAQALRLASHLNLAMC+LKLQ+FSAAIE+CNKALELDSNNEKGLFRRG
Sbjct: 301 EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 360
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EAHLAVNDF+LARADFQKVLQLYP+N RIR+QLAREKKLYANMFERLAE
Sbjct: 361 EAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 420
Query: 1371 EESKAKV---SGDQQADTEMKEEQKNDVAGRQPQV 1466
EE+KAK SGD DTEMKEEQK++ AG Q QV
Sbjct: 421 EENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQV 455
>ref|NP_001139248.1| peptidyl-prolyl cis-trans isomerase FKBP5 isoform 1 [Homo sapiens].
Length = 457
Score = 497 bits (1279), Expect = e-140
Identities = 247/454 (54%), Positives = 328/454 (72%), Gaps = 12/454 (2%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR G G E PMIGD+V VHY G
Sbjct: 1 MTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L +G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E DGGIIRR + +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
++FD R++ F VGEGE D+P G++KA+++M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE+GTVYFK GKY QA++QY KIVSWL
Sbjct: 239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ A+E C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +N+F+ A+ DF+KVL++ P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418
Query: 1371 EESKAK------------VSGDQQADTEMKEEQK 1436
+++K + V+ ++ D++ EE+K
Sbjct: 419 QDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
>ref|NP_001139247.1| peptidyl-prolyl cis-trans isomerase FKBP5 isoform 1 [Homo sapiens].
Length = 457
Score = 497 bits (1279), Expect = e-140
Identities = 247/454 (54%), Positives = 328/454 (72%), Gaps = 12/454 (2%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR G G E PMIGD+V VHY G
Sbjct: 1 MTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L +G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E DGGIIRR + +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
++FD R++ F VGEGE D+P G++KA+++M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE+GTVYFK GKY QA++QY KIVSWL
Sbjct: 239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ A+E C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +N+F+ A+ DF+KVL++ P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418
Query: 1371 EESKAK------------VSGDQQADTEMKEEQK 1436
+++K + V+ ++ D++ EE+K
Sbjct: 419 QDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
>ref|NP_004108.1| peptidyl-prolyl cis-trans isomerase FKBP5 isoform 1 [Homo sapiens].
Length = 457
Score = 497 bits (1279), Expect = e-140
Identities = 247/454 (54%), Positives = 328/454 (72%), Gaps = 12/454 (2%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR G G E PMIGD+V VHY G
Sbjct: 1 MTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L +G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E DGGIIRR + +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
++FD R++ F VGEGE D+P G++KA+++M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPKFGIEPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE+GTVYFK GKY QA++QY KIVSWL
Sbjct: 239 AELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ A+E C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +N+F+ A+ DF+KVL++ P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418
Query: 1371 EESKAK------------VSGDQQADTEMKEEQK 1436
+++K + V+ ++ D++ EE+K
Sbjct: 419 QDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
>ref|NP_001139249.1| peptidyl-prolyl cis-trans isomerase FKBP5 isoform 2 [Homo sapiens].
Length = 268
Score = 266 bits (680), Expect = 4e-71
Identities = 130/223 (58%), Positives = 165/223 (73%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR G G E PMIGD+V VHY G
Sbjct: 1 MTTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGK 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L +G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAGS P
Sbjct: 61 LSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL EDGGIIRR + +GEGY+ PN+GA VE+ LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLF--EDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKP 779
++FD R++ F VGEGE D+P G++KA+++M++ E I+YL P
Sbjct: 179 RMFDCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 221
Score = 57.0 bits (136), Expect = 5e-08
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Frame = +3
Query: 522 KGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYK-----DQIFDRRE-IRFE 683
+GED+T ++D G+++ ++ G G P G V V +G D DR E F
Sbjct: 21 QGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 80
Query: 684 VGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKS 863
+G+G+ + + + M+KGE + KP YA+GSAG IP NA L +E+ L
Sbjct: 81 LGKGQVIK---AWDIGVATMKKGEICHLLCKPEYAYGSAGSLP-KIPSNATLFFEIELLD 136
Query: 864 FE 869
F+
Sbjct: 137 FK 138
>ref|NP_000792.1| peptidyl-prolyl cis-trans isomerase FKBP1A isoform a [Homo
sapiens].
Length = 108
Score = 104 bits (260), Expect = 2e-22
Identities = 52/98 (53%), Positives = 62/98 (63%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 11 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPP+ATLVF+VEL + +
Sbjct: 71 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 108
>ref|NP_463460.1| peptidyl-prolyl cis-trans isomerase FKBP1A isoform a [Homo
sapiens].
Length = 108
Score = 104 bits (260), Expect = 2e-22
Identities = 52/98 (53%), Positives = 62/98 (63%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 11 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPP+ATLVF+VEL + +
Sbjct: 71 QRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE 108
>ref|NP_004107.1| peptidyl-prolyl cis-trans isomerase FKBP1B isoform a [Homo
sapiens].
Length = 108
Score = 99.4 bits (246), Expect = 9e-21
Identities = 48/98 (48%), Positives = 60/98 (61%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L +G KFDSS DR F F +GK EVIK ++ A M +G
Sbjct: 11 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +TC P+ AYG+ G P IPPNATL+F+VEL +
Sbjct: 71 QRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 108
>ref|NP_001128683.1| peptidyl-prolyl cis-trans isomerase FKBP6 isoform b [Homo sapiens].
Length = 322
Score = 91.7 bits (226), Expect = 2e-18
Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 18/287 (6%)
Frame = +3
Query: 549 DGGIIRRIQTRGEGYARPNDGAIVEVALEGY--YKDQIFDRREIR-----FEVGEGETMD 707
D G+++ + G G D +++ V GY + D+ FD R ++GE T+
Sbjct: 30 DRGVLKDVIREGAGDLVAPDASVL-VKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITL- 87
Query: 708 LPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESW 887
G+E + M +GE + KP+YA+G+ G IPPN + +E+ L F ES
Sbjct: 88 --WGMELGLLSMRRGELARFLFKPNYAYGTLGCPPL-IPPNTTVLFEIELLDFLDCAESD 144
Query: 888 E---MSSEEK--------LEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSN 1034
+ +S+E++ L+ + +E G F++ ++ A V+YK+ + L S+
Sbjct: 145 KFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRALLLLRRRSA-PP 203
Query: 1035 EDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVND 1214
E+ +A +L LNL+ YLKL + A+ +AL +D N K LFR G+A L + +
Sbjct: 204 EEQHLVEAAKLPVLLNLSFTYLKLDRPTIALCYGEQALIIDQKNAKALFRCGQACLLLTE 263
Query: 1215 FDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMF 1355
+ AR + + P N R + +EK+++ MF
Sbjct: 264 YQKARDFLVRAQKEQPFNHDINNELKKLASCYRDYVDKEKEMWHRMF 310
Score = 76.3 bits (186), Expect = 8e-14
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +3
Query: 198 DEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTK-FDSSLDRKDKFSFDLGKGEVIK 374
D GVLK + REG G ++ V V Y+G+L + FDS+ RK LG+ +
Sbjct: 30 DRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLW 88
Query: 375 AWDIAVATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 521
++ + +M+ GE+ KP YAYG+ G PP IPPN T++FE+EL +F
Sbjct: 89 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 137
>ref|NP_003593.3| peptidyl-prolyl cis-trans isomerase FKBP6 isoform a [Homo sapiens].
Length = 327
Score = 91.7 bits (226), Expect = 2e-18
Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 18/287 (6%)
Frame = +3
Query: 549 DGGIIRRIQTRGEGYARPNDGAIVEVALEGY--YKDQIFDRREIR-----FEVGEGETMD 707
D G+++ + G G D +++ V GY + D+ FD R ++GE T+
Sbjct: 35 DRGVLKDVIREGAGDLVAPDASVL-VKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITL- 92
Query: 708 LPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESW 887
G+E + M +GE + KP+YA+G+ G IPPN + +E+ L F ES
Sbjct: 93 --WGMELGLLSMRRGELARFLFKPNYAYGTLGCPPL-IPPNTTVLFEIELLDFLDCAESD 149
Query: 888 E---MSSEEK--------LEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSN 1034
+ +S+E++ L+ + +E G F++ ++ A V+YK+ + L S+
Sbjct: 150 KFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRALLLLRRRSA-PP 208
Query: 1035 EDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVND 1214
E+ +A +L LNL+ YLKL + A+ +AL +D N K LFR G+A L + +
Sbjct: 209 EEQHLVEAAKLPVLLNLSFTYLKLDRPTIALCYGEQALIIDQKNAKALFRCGQACLLLTE 268
Query: 1215 FDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMF 1355
+ AR + + P N R + +EK+++ MF
Sbjct: 269 YQKARDFLVRAQKEQPFNHDINNELKKLASCYRDYVDKEKEMWHRMF 315
Score = 76.3 bits (186), Expect = 8e-14
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = +3
Query: 198 DEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTK-FDSSLDRKDKFSFDLGKGEVIK 374
D GVLK + REG G ++ V V Y+G+L + FDS+ RK LG+ +
Sbjct: 35 DRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLW 93
Query: 375 AWDIAVATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 521
++ + +M+ GE+ KP YAYG+ G PP IPPN T++FE+EL +F
Sbjct: 94 GMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDF 142
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 58,912,608
Number of extensions: 1515423
Number of successful extensions: 6427
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 6353
Number of HSP's successfully gapped: 64
Length of query: 576
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 468
Effective length of database: 14,737,052
Effective search space: 6896940336
Effective search space used: 6896940336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007463
(1728 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034349.1| peptidyl-prolyl cis-trans isomerase FKBP4 [Mus ... 771 0.0
Alignment gi|NP_034350.1| peptidyl-prolyl cis-trans isomerase FKBP5 [Mus ... 484 e-137
Alignment gi|XP_001481156.2| PREDICTED: peptidyl-prolyl cis-trans isomera... 164 3e-40
Alignment gi|NP_032045.1| peptidyl-prolyl cis-trans isomerase FKBP1A [Mus... 100 5e-21
Alignment gi|NP_058559.3| peptidyl-prolyl cis-trans isomerase FKBP1B [Mus... 99 1e-20
Alignment gi|NP_291049.1| peptidyl-prolyl cis-trans isomerase FKBP6 [Mus ... 92 2e-18
Alignment gi|NP_001159840.1| peptidyl-prolyl cis-trans isomerase FKBP2 pr... 91 2e-18
Alignment gi|NP_032046.1| peptidyl-prolyl cis-trans isomerase FKBP2 precu... 91 2e-18
Alignment gi|NP_038930.1| peptidyl-prolyl cis-trans isomerase FKBP3 [Mus ... 89 8e-18
Alignment gi|NP_001104536.1| peptidyl-prolyl cis-trans isomerase FKBP8 is... 89 1e-17
>ref|NP_034349.1| peptidyl-prolyl cis-trans isomerase FKBP4 [Mus musculus].
Length = 458
Score = 771 bits (1990), Expect = 0.0
Identities = 388/455 (85%), Positives = 412/455 (90%), Gaps = 3/455 (0%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MTAEE K AENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTE PMIGDRV VHYTGW
Sbjct: 1 MTAEEMKAAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGW 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYG+AGSPP
Sbjct: 61 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGAAGSPP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRI+TRGEGYARPNDGA+VEVALEGY+KD
Sbjct: 121 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKD 180
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
++FD+RE+ FEVGEGE++DLPCGLE+AIQRMEKGEHSIVYLKPSYAFGS GKE+F IPP+
Sbjct: 181 RLFDQRELCFEVGEGESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSVGKERFQIPPH 240
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL+YEV LKSFEKAKESWEMSS EKLEQS IVKERGT YFKEGKYKQAL+QYKKIVSWL
Sbjct: 241 AELRYEVRLKSFEKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWL 300
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
EYESSFS E+ QK ALRLASHLNLAMC+LKLQ+FSAAIE+CNKALELDSNNEKGLFRRG
Sbjct: 301 EYESSFSGEEMQKVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRG 360
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EAHLAVNDFDLARADFQKVLQLYPSN R R+QLAREKKLYANMFERLAE
Sbjct: 361 EAHLAVNDFDLARADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERLAE 420
Query: 1371 EESKAK---VSGDQQADTEMKEEQKNDVAGRQPQV 1466
EE K K +GD D EMK E +N+VA Q +V
Sbjct: 421 EEHKVKAEVAAGDHPTDAEMKGE-RNNVAENQSRV 454
>ref|NP_034350.1| peptidyl-prolyl cis-trans isomerase FKBP5 [Mus musculus].
Length = 456
Score = 484 bits (1247), Expect = e-137
Identities = 239/428 (55%), Positives = 312/428 (72%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MT +E + +A + +G DI+ K+D GVLK++KR GT E PM GD+V VHY G
Sbjct: 1 MTTDEGTSNNGENPAATMTEQGEDITTKKDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGM 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
L DG KFDSS DRK F+F LG+G+VIKAWDI V+TMK GE+CH+ CKPEYAYGSAG
Sbjct: 61 LSDGKKFDSSHDRKKPFAFSLGQGQVIKAWDIGVSTMKKGEICHLLCKPEYAYGSAGHLQ 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIP NATL FE+EL +FKGEDL E D G+IRRI+ +GEGY+ PN+GA V+V LEG
Sbjct: 121 KIPSNATLFFEIELLDFKGEDLFE--DSGVIRRIKRKGEGYSNPNEGATVKVHLEGCCGG 178
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
+ FD R++ F VGEGE D+P G++KA+ +M++ E I+YL P Y FG AGK KF I PN
Sbjct: 179 RTFDCRDVVFVVGEGEDHDIPIGIDKALVKMQREEQCILYLGPRYGFGEAGKPKFGIDPN 238
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AEL YEV LKSFEKAKESWEM ++EKL Q+ IVKE+GTVYFK GKY QA++QY+KIVSWL
Sbjct: 239 AELMYEVTLKSFEKAKESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWL 298
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
E E S ++++ +++ LA+ LNLAMCYLKL+ ++ A+E C+KAL LDS NEKGL+RRG
Sbjct: 299 EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYNKAVECCDKALGLDSANEKGLYRRG 358
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EA L +NDF+ A+ DF+KVL + P N + ++ R++++YANMF++ AE
Sbjct: 359 EAQLLMNDFESAKGDFEKVLAVNPQNRAARLQISMCQRKAKEHNERDRRVYANMFKKFAE 418
Query: 1371 EESKAKVS 1394
++K + S
Sbjct: 419 RDAKEEAS 426
>ref|XP_001481156.2| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP4-like [Mus
musculus].
Length = 87
Score = 164 bits (414), Expect = 3e-40
Identities = 80/86 (93%), Positives = 81/86 (94%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MTAEE K AENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTE PMIGDRV VHYTGW
Sbjct: 1 MTAEEMKAAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTETPMIGDRVFVHYTGW 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEV 368
LLDGTKFDSSLDRKDKFSFDLGKG +
Sbjct: 61 LLDGTKFDSSLDRKDKFSFDLGKGRL 86
>ref|NP_032045.1| peptidyl-prolyl cis-trans isomerase FKBP1A [Mus musculus].
Length = 108
Score = 100 bits (248), Expect = 5e-21
Identities = 50/98 (51%), Positives = 60/98 (61%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 11 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFTLGKQEVIRGWEEGVAQMSVG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ + +YAYG+ G P IPP+ATLVF+VEL + +
Sbjct: 71 QRAKLIISSDYAYGATGHPGIIPPHATLVFDVELLKLE 108
>ref|NP_058559.3| peptidyl-prolyl cis-trans isomerase FKBP1B [Mus musculus].
Length = 108
Score = 98.6 bits (244), Expect = 1e-20
Identities = 48/98 (48%), Positives = 60/98 (61%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L +G KFDSS DR F F +GK EVIK ++ A M +G
Sbjct: 11 GDGRTFPKKGQICVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGTAQMSLG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +TC P+ AYG+ G P IPPNATL+F+VEL +
Sbjct: 71 QRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLSLE 108
>ref|NP_291049.1| peptidyl-prolyl cis-trans isomerase FKBP6 [Mus musculus].
Length = 327
Score = 91.7 bits (226), Expect = 2e-18
Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 18/302 (5%)
Frame = +3
Query: 549 DGGIIRRIQTRGEGYARPNDGAIVEVALEGY--YKDQIFDRREIR-----FEVGEGETMD 707
D G+++ I G G D +++ V GY + D+ FD R ++GE T+
Sbjct: 35 DRGVLKDIIREGTGDTVTPDASVL-VKYSGYLEHMDKPFDSNCFRKTPRLMKLGEDITL- 92
Query: 708 LPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESW 887
G+E + M KGE + KP+YA+G+ G IPPNA + +E+ L F + ES
Sbjct: 93 --WGMELGLLSMRKGELARFLFKPAYAYGTLGCPPL-IPPNATVLFEIELIDFLDSAESD 149
Query: 888 EMS--SEEKLEQSTIVK---------ERGTVYFKEGKYKQALVQYKKIVSWLEYESSFSN 1034
+ S E+ EQ + K E G F++ ++ A V+YK+ + L +
Sbjct: 150 KFCALSAEQQEQFPLQKVLKVAATEREFGNYLFRQNRFCDAKVRYKRALLLLHRRLATCE 209
Query: 1035 EDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRGEAHLAVND 1214
E A+ L LNL+ YLKL + A+ +AL +D N K LFR G+A L + +
Sbjct: 210 EQHLVEPAVLLVL-LNLSFVYLKLDRPAMALRYGEQALLIDKRNAKALFRCGQACLLLTE 268
Query: 1215 FDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAEEESKAKVS 1394
++ AR + + P N R + RE+++ MF A S++ V
Sbjct: 269 YERARDFLVRAQKEQPCNHDINNELKKLSSHYRDYVDREREMCHRMF---APCGSRSSVG 325
Query: 1395 GD 1400
G+
Sbjct: 326 GN 327
Score = 80.9 bits (198), Expect = 3e-15
Identities = 47/109 (43%), Positives = 64/109 (58%), Gaps = 1/109 (0%)
Frame = +3
Query: 198 DEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTK-FDSSLDRKDKFSFDLGKGEVIK 374
D GVLK I REGTG + V V Y+G+L K FDS+ RK LG+ +
Sbjct: 35 DRGVLKDIIREGTGDTVTPDAS-VLVKYSGYLEHMDKPFDSNCFRKTPRLMKLGEDITLW 93
Query: 375 AWDIAVATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 521
++ + +M+ GE+ KP YAYG+ G PP IPPNAT++FE+EL +F
Sbjct: 94 GMELGLLSMRKGELARFLFKPAYAYGTLGCPPLIPPNATVLFEIELIDF 142
>ref|NP_001159840.1| peptidyl-prolyl cis-trans isomerase FKBP2 precursor [Mus musculus].
Length = 140
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|NP_032046.1| peptidyl-prolyl cis-trans isomerase FKBP2 precursor [Mus musculus].
Length = 140
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|NP_038930.1| peptidyl-prolyl cis-trans isomerase FKBP3 [Mus musculus].
Length = 224
Score = 89.4 bits (220), Expect = 8e-18
Identities = 52/118 (44%), Positives = 66/118 (55%), Gaps = 11/118 (9%)
Frame = +3
Query: 198 DEGVLKVIK---REGTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDK-------FSF 347
DEG K K ++G T P GD V YTG L DGT FD+++ K SF
Sbjct: 105 DEGPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSF 164
Query: 348 DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSP-PKIPPNATLVFEVELFE 518
+G G+VI+ WD A+ TM GE + +PE+AYG G P KIPPN L+FEVEL +
Sbjct: 165 KVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVD 222
>ref|NP_001104536.1| peptidyl-prolyl cis-trans isomerase FKBP8 isoform a [Mus musculus].
Length = 403
Score = 88.6 bits (218), Expect = 1e-17
Identities = 64/260 (24%), Positives = 122/260 (46%), Gaps = 4/260 (1%)
Frame = +3
Query: 585 EGYARPNDGAIVEVALEGYYKD--QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEH 758
+G +RP G +V V L+ ++ ++ + E+ F +G+ + + L+ ++ M+ GE
Sbjct: 102 KGSSRPLKGQVVTVHLQMSLENGTRVQEEPELAFTLGDCDVIQ---ALDLSVPLMDVGET 158
Query: 759 SIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKER 938
++V Y +G G +IPP+A L EV LK+ E + +S +E++ + +E
Sbjct: 159 AMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAEDGPDLEMLSGQERVALANRKREC 218
Query: 939 GTVYFKEGKYKQALVQYKKIVSWLEYESS--FSNEDAQKAQALRLASHLNLAMCYLKLQS 1112
G +++ + A Y + + + + E+ ++ L++ NLA LKL
Sbjct: 219 GNAHYQRADFVLAANSYDLAIKAITSNTKVDMTCEEEEELLQLKVKCLNNLAASQLKLDH 278
Query: 1113 FSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXX 1292
+ AA+ +C++ LE +N K LFR+G+ ++ A + L+L PSN
Sbjct: 279 YRAALRSCSQVLEHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELS 338
Query: 1293 XXXXRIRKQLAREKKLYANM 1352
+ Q + E LY M
Sbjct: 339 KLVKKRAAQRSTETALYRKM 358
Score = 68.2 bits (165), Expect = 2e-11
Identities = 53/151 (35%), Positives = 74/151 (49%), Gaps = 3/151 (1%)
Frame = +3
Query: 69 QRTLSGARSPRNGAMTAEETKTAENGAQSAPLPLEGVDISPKQDEGVL--KVIKREGTGT 242
Q T+ A P GA+ E E AP P E +DI G+L K + G+
Sbjct: 50 QPTVEEAEQP--GALAREFLAATEPEPAPAPAPEEWLDIL---GNGLLRMKTLVPGPKGS 104
Query: 243 EMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCH 422
P+ G V+VH L +GT+ + + + +F LG +VI+A D++V M VGE
Sbjct: 105 SRPLKGQVVTVHLQMSLENGTR----VQEEPELAFTLGDCDVIQALDLSVPLMDVGETAM 160
Query: 423 ITCKPEYAYGSAGS-PPKIPPNATLVFEVEL 512
+T +Y YG GS P IPP+A L EV L
Sbjct: 161 VTADSKYCYGPQGSRSPYIPPHAALCLEVTL 191
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 49,685,127
Number of extensions: 1258710
Number of successful extensions: 5277
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 5206
Number of HSP's successfully gapped: 50
Length of query: 576
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 469
Effective length of database: 12,403,707
Effective search space: 5817338583
Effective search space used: 5817338583
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007463
(1728 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001182266.1| peptidyl-prolyl cis-trans isomerase FKBP4 [S... 873 0.0
Alignment gi|XP_003361481.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 466 e-131
Alignment gi|XP_001929450.3| PREDICTED: peptidyl-prolyl cis-trans isomera... 219 5e-57
Alignment gi|NP_001033089.1| FKBP1A-like [Sus scrofa]. 106 4e-23
Alignment gi|XP_003125413.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 99 6e-21
Alignment gi|XP_003353839.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 91 2e-18
Alignment gi|XP_003353838.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 91 2e-18
Alignment gi|XP_003353837.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 91 2e-18
Alignment gi|XP_003122628.1| PREDICTED: peptidyl-prolyl cis-trans isomera... 91 2e-18
Alignment gi|XP_001927424.3| PREDICTED: peptidyl-prolyl cis-trans isomera... 91 2e-18
>ref|NP_001182266.1| peptidyl-prolyl cis-trans isomerase FKBP4 [Sus scrofa].
Length = 456
Score = 873 bits (2256), Expect = 0.0
Identities = 439/452 (97%), Positives = 440/452 (97%)
Frame = +3
Query: 111 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 290
MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW
Sbjct: 1 MTAEETKTAENGAQSAPLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGW 60
Query: 291 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 470
LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP
Sbjct: 61 LLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSPP 120
Query: 471 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 650
KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD
Sbjct: 121 KIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD 180
Query: 651 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 830
QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN
Sbjct: 181 QIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPN 240
Query: 831 AELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQALVQYKKIVSWL 1010
AELKYEVHLKSFEKAKESWEMSSEEKLEQS+IVKERGTVYFKEGKYKQALVQYKKIVSWL
Sbjct: 241 AELKYEVHLKSFEKAKESWEMSSEEKLEQSSIVKERGTVYFKEGKYKQALVQYKKIVSWL 300
Query: 1011 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 1190
EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG
Sbjct: 301 EYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSFSAAIENCNKALELDSNNEKGLFRRG 360
Query: 1191 EAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXXXXXRIRKQLAREKKLYANMFERLAE 1370
EAHLAVNDFDLARADFQKVLQLYPSN RIRKQLAREKKLYANMFERLAE
Sbjct: 361 EAHLAVNDFDLARADFQKVLQLYPSNKAAKAQLALCQQRIRKQLAREKKLYANMFERLAE 420
Query: 1371 EESKAKVSGDQQADTEMKEEQKNDVAGRQPQV 1466
EESKAKVSGDQQADTEMKEEQKNDVAGRQPQV
Sbjct: 421 EESKAKVSGDQQADTEMKEEQKNDVAGRQPQV 452
>ref|XP_003361481.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP5-like, partial
[Sus scrofa].
Length = 422
Score = 466 bits (1199), Expect = e-131
Identities = 231/419 (55%), Positives = 307/419 (73%), Gaps = 12/419 (2%)
Frame = +3
Query: 216 VIKREGTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVA 395
++KR G E PMIGD+V VHY G L +G KFDSS DR + F F LGKGE +KA+ I VA
Sbjct: 1 IVKRVGNSEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGEFLKAFLIGVA 60
Query: 396 TMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQ 575
TMK GE+CH+ CKPEYAYGSAGS PKIP NATL FE+EL +FKGEDL E DGGIIRRI+
Sbjct: 61 TMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKGEDLFE--DGGIIRRIK 118
Query: 576 TRGEGYARPNDGAIVEVALEGYYKDQIFDRREIRFEVGEGETMDLPCGLEKAIQRMEKGE 755
+GEGY+ PN+GA VE+ LEG ++FD R++ F VGEGE D+P G++KA+++M++ E
Sbjct: 119 RKGEGYSNPNEGATVEIHLEGRCGGRVFDCRDVGFIVGEGEDHDIPIGIDKALEKMQREE 178
Query: 756 HSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKSFEKAKESWEMSSEEKLEQSTIVKE 935
I+YL P Y FG AGK KF I PNAEL YEV LKSFEKAKESWEM ++EKLEQ+ IVKE
Sbjct: 179 QCILYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKE 238
Query: 936 RGTVYFKEGKYKQALVQYKKIVSWLEYESSFSNEDAQKAQALRLASHLNLAMCYLKLQSF 1115
+GTVYFK GKY QA++QY KIVSWLE E S ++++ +++ LA+ LNLAMCYLKL+ +
Sbjct: 239 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 298
Query: 1116 SAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNXXXXXXXXX 1295
+ A+E C+KAL LDS NEKGL+RRGEA L +N+F+ AR DF+KVL++ P N
Sbjct: 299 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESARGDFEKVLEVNPQNKAARLQISM 358
Query: 1296 XXXRIRKQLAREKKLYANMFERLAEEESKAK------------VSGDQQADTEMKEEQK 1436
+ ++ R++++YANMF++ AE+++K + V+ +++ +++ EE+K
Sbjct: 359 CQKKAKEHNERDRRIYANMFKKFAEQDAKEEASKAMSKKSLEGVTNEKETESQSMEEEK 417
>ref|XP_001929450.3| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP5, partial [Sus
scrofa].
Length = 177
Score = 219 bits (557), Expect = 5e-57
Identities = 110/174 (63%), Positives = 131/174 (75%), Gaps = 6/174 (3%)
Frame = +3
Query: 120 EETKTAENGAQS------APLPLEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVSVHY 281
EET T + GA++ A + +G DI+ K+D GVLK++KR G E PMIGD+V VHY
Sbjct: 6 EETMTTDEGAKNNGESPAAAVAEQGEDITSKKDRGVLKIVKRVGNSEETPMIGDKVYVHY 65
Query: 282 TGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAG 461
G L +G KFDSS DR + F F LGKG+VIKAWDI VATMK GE+CH+ CKPEYAYGSAG
Sbjct: 66 KGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAG 125
Query: 462 SPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVE 623
S PKIP NATL FE+EL +FKGEDL EDGGIIRRI+ +GEGY+ PN+GA VE
Sbjct: 126 SLPKIPSNATLFFEIELLDFKGEDLF--EDGGIIRRIKRKGEGYSNPNEGATVE 177
Score = 54.7 bits (130), Expect = 2e-07
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Frame = +3
Query: 522 KGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYK-----DQIFDRRE-IRFE 683
+GED+T ++D G+++ ++ G P G V V +G D DR E F
Sbjct: 29 QGEDITSKKDRGVLKIVKRVGNSEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFS 88
Query: 684 VGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAELKYEVHLKS 863
+G+G+ + + + M+KGE + KP YA+GSAG IP NA L +E+ L
Sbjct: 89 LGKGQVIK---AWDIGVATMKKGEICHLLCKPEYAYGSAGSLP-KIPSNATLFFEIELLD 144
Query: 864 FE 869
F+
Sbjct: 145 FK 146
>ref|NP_001033089.1| FKBP1A-like [Sus scrofa].
Length = 108
Score = 106 bits (265), Expect = 4e-23
Identities = 53/98 (54%), Positives = 62/98 (63%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L DG KFDSS DR F F LGK EVI+ W+ VA M VG
Sbjct: 11 GDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +T P+YAYG+ G P IPPNATLVF+VEL + +
Sbjct: 71 QRAKLTISPDYAYGATGHPGIIPPNATLVFDVELLKLE 108
>ref|XP_003125413.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1B-like isoform
1 [Sus scrofa].
Length = 108
Score = 99.4 bits (246), Expect = 6e-21
Identities = 48/98 (48%), Positives = 60/98 (61%)
Frame = +3
Query: 231 GTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVG 410
G G P G VHYTG L +G KFDSS DR F F +GK EVIK ++ A M +G
Sbjct: 11 GDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLG 70
Query: 411 EVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFK 524
+ +TC P+ AYG+ G P IPPNATL+F+VEL +
Sbjct: 71 QRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE 108
>ref|XP_003353839.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP2-like isoform 4
[Sus scrofa].
Length = 140
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|XP_003353838.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP2-like isoform 3
[Sus scrofa].
Length = 140
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|XP_003353837.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP2-like isoform 2
[Sus scrofa].
Length = 140
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 47 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 106
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 107 ELGYGERGAPPKIPGGATLVFEVELLKIE 135
>ref|XP_003122628.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP2-like isoform 1
[Sus scrofa].
Length = 162
Score = 91.3 bits (225), Expect = 2e-18
Identities = 46/89 (51%), Positives = 56/89 (62%)
Frame = +3
Query: 258 GDRVSVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGEVCHITCKP 437
GD + +HYTG L DGT+FDSSL + F F LG G+VIK WD + M GE +
Sbjct: 69 GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 128
Query: 438 EYAYGSAGSPPKIPPNATLVFEVELFEFK 524
E YG G+PPKIP ATLVFEVEL + +
Sbjct: 129 ELGYGERGAPPKIPGGATLVFEVELLKIE 157
>ref|XP_001927424.3| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP3 [Sus scrofa].
Length = 224
Score = 91.3 bits (225), Expect = 2e-18
Identities = 53/118 (44%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Frame = +3
Query: 189 PKQDEGVLKVIKREGTGTEMPMIGDRVSVHYTGWLLDGTKFDSSLDRKDK-------FSF 347
PK + VLK +G T P GD V YTG L DGT FD+++ K SF
Sbjct: 109 PKYTKSVLK----KGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKKKSAKPLSF 164
Query: 348 DLGKGEVIKAWDIAVATMKVGEVCHITCKPEYAYGSAGSP-PKIPPNATLVFEVELFE 518
+G G+VI+ WD A+ TM GE + +PE+AYG G P KIPPNA L+FEVEL +
Sbjct: 165 KVGIGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLIFEVELVD 222
Score = 50.4 bits (119), Expect = 3e-06
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Frame = +3
Query: 516 EFKGEDLTEEEDGGIIRRIQTRGEGYARPNDGAIVEVALEGYYKD-QIFDR--------- 665
E K E+ +E + + +G+ P G +V G +D +FD
Sbjct: 97 ETKSEETLDEGPPKYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSSKKK 156
Query: 666 ---REIRFEVGEGETMDLPCGLEKAIQRMEKGEHSIVYLKPSYAFGSAGKEKFHIPPNAE 836
+ + F+VG G+ + G ++A+ M KGE + + ++P +A+G G+ IPPNA+
Sbjct: 157 KSAKPLSFKVGIGKVIR---GWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAK 213
Query: 837 LKYEVHL 857
L +EV L
Sbjct: 214 LIFEVEL 220
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,175,981
Number of extensions: 967230
Number of successful extensions: 4231
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 4181
Number of HSP's successfully gapped: 46
Length of query: 576
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 472
Effective length of database: 8,754,644
Effective search space: 4132191968
Effective search space used: 4132191968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007463
(1728 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 466 e-128
>Sscrofa_Chr05
|| Length = 111506441
Score = 466 bits (235), Expect = e-128
Identities = 241/243 (99%)
Strand = Plus / Minus
Query: 1141 aggccctggagctggacagcaacaacgagaagggccttttccgccggggagaggcccacc 1200
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 69601845 aggccctggagctggacagcaacaacgagaagggcctcttccgccggggagaggcccacc 69601786
Query: 1201 tggcagtgaatgactttgacttggctcgagctgacttccagaaggtcctgcagctctatc 1260
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 69601785 tggcagtgaatgactttgacttggctcgagctgacttccagaaggtcttgcagctctatc 69601726
Query: 1261 ccagcaacaaagccgccaaggcccagttggcgctctgccagcagcggatccgtaagcagc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69601725 ccagcaacaaagccgccaaggcccagttggcgctctgccagcagcggatccgtaagcagc 69601666
Query: 1321 ttgcgcgggagaagaagctctatgccaacatgtttgagaggctggcagaggaggagagca 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69601665 ttgcgcgggagaagaagctctatgccaacatgtttgagaggctggcagaggaggagagca 69601606
Query: 1381 agg 1383
|||
Sbjct: 69601605 agg 69601603
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 2 gacccacctccttcgcccgcctgcctgcgcccgcgccgaagaggtgcgcgagcctcggcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69608009 gacccacctccttcgcccgcctgcctgcgcccgcgccgaagaggtgcgcgagcctcggcc 69607950
Query: 62 gcccgcacagcgcacactgtccggcgcccgctccccgagaaacggcgcgatgaccgccga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69607949 gcccgcacagcgcacactgtccggcgcccgctccccgagaaacggcgcgatgaccgccga 69607890
Query: 122 agagactaagaccgccgagaatggggcgcagtcggcgccgctgcccctcgagggggtgga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69607889 agagactaagaccgccgagaatggggcgcagtcggcgccgctgcccctcgagggggtgga 69607830
Query: 182 catcagccccaagcaggatgaaggcgtgcttaaggt 217
||||||||||||||||||||||||||||||||||||
Sbjct: 69607829 catcagccccaagcaggatgaaggcgtgcttaaggt 69607794
Score = 367 bits (185), Expect = 1e-98
Identities = 188/189 (99%)
Strand = Plus / Minus
Query: 955 aggaaggcaagtacaagcaagctctggtgcagtacaagaagattgtgtcctggctagaat 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69602537 aggaaggcaagtacaagcaagctctggtgcagtacaagaagattgtgtcctggctagaat 69602478
Query: 1015 atgagtcgagtttctctaacgaggacgcacagaaggcacaggctcttcggctggcctccc 1074
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 69602477 atgagtcgagtttctctaacgaggatgcacagaaggcacaggctcttcggctggcctccc 69602418
Query: 1075 acctcaacctagccatgtgttatctgaaactacagtccttctcggctgccattgaaaact 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69602417 acctcaacctagccatgtgttatctgaaactacagtccttctcggctgccattgaaaact 69602358
Query: 1135 gtaacaagg 1143
|||||||||
Sbjct: 69602357 gtaacaagg 69602349
Score = 305 bits (154), Expect = 4e-80
Identities = 157/158 (99%)
Strand = Plus / Minus
Query: 624 gttgccctggaagggtactacaaggaccagatctttgaccggcgggagatccgctttgag 683
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 69603801 gttgccctggaagggtactacaaggaccagatctttgaccagcgggagatccgctttgag 69603742
Query: 684 gtcggcgaaggggagactatggacttgccttgtgggctggagaaagccattcagcgcatg 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69603741 gtcggcgaaggggagactatggacttgccttgtgggctggagaaagccattcagcgcatg 69603682
Query: 744 gaaaaaggagagcattccattgtgtacctcaaacccag 781
||||||||||||||||||||||||||||||||||||||
Sbjct: 69603681 gaaaaaggagagcattccattgtgtacctcaaacccag 69603644
Score = 293 bits (148), Expect = 2e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 214 aggtcatcaagcgagagggcacaggcacagagatgcccatgatcggggaccgagtctctg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69605746 aggtcatcaagcgagagggcacaggcacagagatgcccatgatcggggaccgagtctctg 69605687
Query: 274 tccactacacaggctggctactagatggcaccaagtttgactccagcctggaccgcaagg 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69605686 tccactacacaggctggctactagatggcaccaagtttgactccagcctggaccgcaagg 69605627
Query: 334 acaaattctccttcgacctggggaaagg 361
||||||||||||||||||||||||||||
Sbjct: 69605626 acaaattctccttcgacctggggaaagg 69605599
Score = 285 bits (144), Expect = 4e-74
Identities = 147/148 (99%)
Strand = Plus / Minus
Query: 359 aggagaggtcatcaaggcttgggatattgctgtagcaaccatgaaagtgggggaagtgtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69605139 aggagaggtcatcaaggcttgggatattgctgtagcaaccatgaaagtgggggaagtgtg 69605080
Query: 419 ccacatcacctgcaaaccagaatatgcctacggttcagccggcagtcctcccaagattcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 69605079 ccacatcacctgcaaaccagaatatgcctacggttcagccggcagtcctcccaagatacc 69605020
Query: 479 tcccaatgccacgcttgtgtttgaggtg 506
||||||||||||||||||||||||||||
Sbjct: 69605019 tcccaatgccacgcttgtgtttgaggtg 69604992
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 502 aggtggagttgttcgagttcaagggagaggacctgacagaagaggaagacggtgggatca 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69604197 aggtggagttgttcgagttcaagggagaggacctgacagaagaggaagacggtgggatca 69604138
Query: 562 tcaggagaatacagacccggggggaaggctatgccaggcccaacgatggtgccattgtgg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69604137 tcaggagaatacagacccggggggaaggctatgccaggcccaacgatggtgccattgtgg 69604078
Query: 622 agg 624
|||
Sbjct: 69604077 agg 69604075
Score = 198 bits (100), Expect = 7e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 1381 aggccaaggtgtcaggagaccagcaggcagacacagagatgaaggaggagcagaagaatg 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69600545 aggccaaggtgtcaggagaccagcaggcagacacagagatgaaggaggagcagaagaatg 69600486
Query: 1441 atgtggcagggcgccagcctcaggtggaggcggaagcata 1480
||||||||||||||||||||||||||||||||||||||||
Sbjct: 69600485 atgtggcagggcgccagcctcaggtggaggcggaagcata 69600446
Score = 188 bits (95), Expect = 7e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 779 cagctatgcgttcggcagtgctgggaaggaaaagttccacatcccacctaatgctgagtt 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69603020 cagctatgcgttcggcagtgctgggaaggaaaagttccacatcccacctaatgctgagtt 69602961
Query: 839 gaagtatgaagtacacctcaagagttttgagaagg 873
|||||||||||||||||||||||||||||||||||
Sbjct: 69602960 gaagtatgaagtacacctcaagagttttgagaagg 69602926
Score = 165 bits (83), Expect = 1e-37
Identities = 86/87 (98%)
Strand = Plus / Minus
Query: 871 aggccaaggagtcgtgggagatgagctcagaggagaagctggagcagagcaccattgtga 930
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 69602846 aggccaaggagtcgtgggagatgagctcagaggagaagctggagcagagcagcattgtga 69602787
Query: 931 aggagcggggcactgtatacttcaagg 957
|||||||||||||||||||||||||||
Sbjct: 69602786 aggagcggggcactgtatacttcaagg 69602760
Score = 89.7 bits (45), Expect = 5e-15
Identities = 69/73 (94%), Gaps = 3/73 (4%)
Strand = Plus / Minus
Query: 1545 ttagttttgtaaaaactgaagaattttgagtgaattaga-cttta-ttttctatctgg-t 1601
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct: 69600381 ttagttttgtaaaaactgaagaattttgagtgaattagacctttatttttctatctggtt 69600322
Query: 1602 ggatggttgcttt 1614
||||||| |||||
Sbjct: 69600321 ggatggtggcttt 69600309
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,875,957
Number of extensions: 288
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 11
Length of query: 1728
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1706
Effective length of database: 2,808,408,574
Effective search space: 4791145027244
Effective search space used: 4791145027244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)