Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007469
(1037 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098840.1| SCAN domain-containing protein 1-like [Bos t... 199 3e-51
Alignment gi|XP_002688816.1| PREDICTED: SCAN domain containing protein 1-... 183 2e-46
Alignment gi|XP_001254653.2| PREDICTED: SCAN domain containing protein 1-... 183 2e-46
Alignment gi|NP_001073059.1| SCAN domain-containing protein 1 [Bos taurus]. 109 3e-24
Alignment gi|NP_001193233.1| myeloid zinc finger 1 [Bos taurus]. 97 3e-20
Alignment gi|XP_002695498.1| PREDICTED: zinc finger protein 42 (myeloid-s... 97 3e-20
Alignment gi|NP_001192439.1| zinc finger protein with KRAB and SCAN domai... 87 2e-17
Alignment gi|XP_002698259.1| PREDICTED: zinc finger protein 197-like [Bos... 87 2e-17
Alignment gi|NP_001069627.1| zinc finger and SCAN domain containing 25 [B... 87 2e-17
Alignment gi|NP_001030445.1| zinc finger and SCAN domain-containing prote... 87 3e-17
>ref|NP_001098840.1| SCAN domain-containing protein 1-like [Bos taurus].
Length = 116
Score = 199 bits (506), Expect = 3e-51
Identities = 101/116 (87%), Positives = 106/116 (91%), Gaps = 1/116 (0%)
Frame = +3
Query: 201 LAEEPEVVLIAPPQVQVPPESF-KDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPR 377
+AEEPE +LIAPPQVQVPPES +DSE+DLETVPR PL PAASRQRFR+FRYEDAAGPR
Sbjct: 1 MAEEPEGILIAPPQVQVPPESLDEDSEDDLETVPRRSPLNPAASRQRFRQFRYEDAAGPR 60
Query: 378 DVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 545
DVLR LQELAGQWLRPDIHTKEQIVEMLVQEQ QAVLPEELRA A RCQPGVRITG
Sbjct: 61 DVLRHLQELAGQWLRPDIHTKEQIVEMLVQEQFQAVLPEELRAWALRCQPGVRITG 116
>ref|XP_002688816.1| PREDICTED: SCAN domain containing protein 1-like [Bos taurus].
Length = 113
Score = 183 bits (465), Expect = 2e-46
Identities = 91/115 (79%), Positives = 100/115 (86%)
Frame = +3
Query: 201 LAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRD 380
+AEEPE +LIAPPQVQVPPES E+DLETVPR PL PAASRQRFR+F YEDAAGPR
Sbjct: 1 MAEEPEDILIAPPQVQVPPESL--DEDDLETVPRRSPLNPAASRQRFREFHYEDAAGPRG 58
Query: 381 VLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 545
+LR LQ+L+GQWLRPDIH KE++VEMLVQEQ QAVLPEELR AQRCQPGVRITG
Sbjct: 59 ILRHLQQLSGQWLRPDIHMKEKLVEMLVQEQFQAVLPEELRPWAQRCQPGVRITG 113
>ref|XP_001254653.2| PREDICTED: SCAN domain containing protein 1-like [Bos taurus].
Length = 113
Score = 183 bits (465), Expect = 2e-46
Identities = 91/115 (79%), Positives = 100/115 (86%)
Frame = +3
Query: 201 LAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRD 380
+AEEPE +LIAPPQVQVPPES E+DLETVPR PL PAASRQRFR+F YEDAAGPR
Sbjct: 1 MAEEPEDILIAPPQVQVPPESL--DEDDLETVPRRSPLNPAASRQRFREFHYEDAAGPRG 58
Query: 381 VLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 545
+LR LQ+L+GQWLRPDIH KE++VEMLVQEQ QAVLPEELR AQRCQPGVRITG
Sbjct: 59 ILRHLQQLSGQWLRPDIHMKEKLVEMLVQEQFQAVLPEELRPWAQRCQPGVRITG 113
>ref|NP_001073059.1| SCAN domain-containing protein 1 [Bos taurus].
Length = 178
Score = 109 bits (273), Expect = 3e-24
Identities = 56/83 (67%), Positives = 63/83 (75%)
Frame = +3
Query: 297 PRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQL 476
P G P RQRFR+FRY+DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL
Sbjct: 96 PGGSRPGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQL 155
Query: 477 QAVLPEELRARAQRCQPGVRITG 545
A+LPE RAR R + VRITG
Sbjct: 156 LAILPEAARARRLRRRTDVRITG 178
>ref|NP_001193233.1| myeloid zinc finger 1 [Bos taurus].
Length = 734
Score = 96.7 bits (239), Expect = 3e-20
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +3
Query: 267 KDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 446
+DSEED P L P A+RQ+FR+FRYE+AAGP L QL+EL QWLRP+ H+KEQ
Sbjct: 25 EDSEED---EPAAWDLGPEAARQQFRRFRYEEAAGPGQALAQLRELCRQWLRPEAHSKEQ 81
Query: 447 IVEMLVQEQLQAVLPEELRARAQRCQPG 530
++E+LV EQ VLP E++AR + QPG
Sbjct: 82 MLELLVLEQFLGVLPPEIQARVRGQQPG 109
>ref|XP_002695498.1| PREDICTED: zinc finger protein 42 (myeloid-specific retinoic
acid-responsive)-like [Bos taurus].
Length = 734
Score = 96.7 bits (239), Expect = 3e-20
Identities = 49/88 (55%), Positives = 63/88 (71%)
Frame = +3
Query: 267 KDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 446
+DSEED P L P A+RQ+FR+FRYE+AAGP L QL+EL QWLRP+ H+KEQ
Sbjct: 25 EDSEED---EPAAWDLGPEAARQQFRRFRYEEAAGPGQALAQLRELCRQWLRPEAHSKEQ 81
Query: 447 IVEMLVQEQLQAVLPEELRARAQRCQPG 530
++E+LV EQ VLP E++AR + QPG
Sbjct: 82 MLELLVLEQFLGVLPPEIQARVRGQQPG 109
>ref|NP_001192439.1| zinc finger protein with KRAB and SCAN domains 1 [Bos taurus].
Length = 563
Score = 87.4 bits (215), Expect = 2e-17
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = +3
Query: 204 AEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDV 383
A+E + ++I + + E + L+ P P P RQRFR F Y++ GPR+
Sbjct: 17 AQEKDGIVIVKVEEEDEEEHMWGQDASLQESP---PPDPEVFRQRFRHFCYQNTFGPREA 73
Query: 384 LRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
L +L+EL QWLRP+IHTKEQI+E+LV EQ ++LP EL+A Q +P
Sbjct: 74 LSRLKELCHQWLRPEIHTKEQILELLVLEQFLSILPRELQAWLQEYRP 121
>ref|XP_002698259.1| PREDICTED: zinc finger protein 197-like [Bos taurus].
Length = 563
Score = 87.4 bits (215), Expect = 2e-17
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = +3
Query: 204 AEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDV 383
A+E + ++I + + E + L+ P P P RQRFR F Y++ GPR+
Sbjct: 17 AQEKDGIVIVKVEEEDEEEHMWGQDASLQESP---PPDPEVFRQRFRHFCYQNTFGPREA 73
Query: 384 LRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
L +L+EL QWLRP+IHTKEQI+E+LV EQ ++LP EL+A Q +P
Sbjct: 74 LSRLKELCHQWLRPEIHTKEQILELLVLEQFLSILPRELQAWLQEYRP 121
>ref|NP_001069627.1| zinc finger and SCAN domain containing 25 [Bos taurus].
Length = 152
Score = 87.0 bits (214), Expect = 2e-17
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Frame = +3
Query: 198 MLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPL---TPAASRQRFRKFRYEDAA 368
ML E P + PQ Q+ K +E +P GR +P R RFR+FRY++AA
Sbjct: 1 MLVERPGMA--EEPQQQMGGHVVKLEKE----LPWGRTREDPSPETFRLRFRQFRYQEAA 54
Query: 369 GPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA 506
GP++ LR+LQEL QWLRP++HTKEQI+E+LV EQ +LP E A
Sbjct: 55 GPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYA 100
>ref|NP_001030445.1| zinc finger and SCAN domain-containing protein 21 [Bos taurus].
Length = 466
Score = 86.7 bits (213), Expect = 3e-17
Identities = 47/98 (47%), Positives = 61/98 (62%)
Frame = +3
Query: 234 PPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQ 413
PPQ Q P + EE+ +G+ L RQRFR+F Y D GPR+ L QL+ L +
Sbjct: 9 PPQEQGPVIVKIEEEEE-----KGKRLPMEIFRQRFRQFGYHDTPGPREALSQLRVLCCE 63
Query: 414 WLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
WLRP+IHTKEQI+E+LV EQ +LP+EL+A Q P
Sbjct: 64 WLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCP 101
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,142,382
Number of extensions: 1153835
Number of successful extensions: 4563
Number of sequences better than 1.0e-05: 82
Number of HSP's gapped: 4540
Number of HSP's successfully gapped: 82
Length of query: 345
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,273,310
Effective search space: 3454141020
Effective search space used: 3454141020
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007469
(1037 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865437.1| PREDICTED: similar to SCAN domain-containing pr... 114 2e-25
Alignment gi|XP_852290.1| PREDICTED: similar to SCAN domain-containing pr... 114 2e-25
Alignment gi|XP_536869.2| PREDICTED: similar to zinc finger protein 99 [C... 92 1e-18
Alignment gi|XP_538786.2| PREDICTED: similar to Zinc finger protein 483 [... 90 4e-18
Alignment gi|XP_541336.2| PREDICTED: similar to Zinc finger protein 42 (M... 89 7e-18
Alignment gi|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (... 88 1e-17
Alignment gi|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (... 88 2e-17
Alignment gi|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 ho... 87 2e-17
Alignment gi|XP_546971.2| PREDICTED: similar to zinc finger protein 498 i... 86 4e-17
Alignment gi|XP_547697.2| PREDICTED: similar to zinc finger protein 496 [... 86 8e-17
>ref|XP_865437.1| PREDICTED: similar to SCAN domain-containing protein 1 isoform 3
[Canis familiaris].
Length = 179
Score = 114 bits (284), Expect = 2e-25
Identities = 64/120 (53%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Frame = +3
Query: 204 AEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLT------PAASRQRFRKFRYEDA 365
A P + + PP + PP + E PR P + P RQRFR+FRY+DA
Sbjct: 68 ASAPLELPVGPPALSSPPLA--------EAAPRSPPHSGGSRPGPETFRQRFRQFRYQDA 119
Query: 366 AGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 545
AGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRITG
Sbjct: 120 AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_852290.1| PREDICTED: similar to SCAN domain-containing protein 1 isoform 2
[Canis familiaris].
Length = 179
Score = 114 bits (284), Expect = 2e-25
Identities = 64/120 (53%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Frame = +3
Query: 204 AEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLT------PAASRQRFRKFRYEDA 365
A P + + PP + PP + E PR P + P RQRFR+FRY+DA
Sbjct: 68 ASAPLELPVGPPALSSPPLA--------EAAPRSPPHSGGSRPGPETFRQRFRQFRYQDA 119
Query: 366 AGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 545
AGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRITG
Sbjct: 120 AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_536869.2| PREDICTED: similar to zinc finger protein 99 [Canis familiaris].
Length = 531
Score = 91.7 bits (226), Expect = 1e-18
Identities = 43/87 (49%), Positives = 62/87 (71%)
Frame = +3
Query: 267 KDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 446
+DS E P G P SRQRFR+FRY++AAGP + L +L+EL +WLRP++H+KEQ
Sbjct: 18 EDSRGGQEPDPPGSCQDPEKSRQRFRRFRYQEAAGPEEALSRLRELCRRWLRPELHSKEQ 77
Query: 447 IVEMLVQEQLQAVLPEELRARAQRCQP 527
I+E+LV EQ ++LP+EL+A ++ P
Sbjct: 78 ILELLVLEQFLSILPQELQAWVRKHSP 104
>ref|XP_538786.2| PREDICTED: similar to Zinc finger protein 483 [Canis familiaris].
Length = 718
Score = 89.7 bits (221), Expect = 4e-18
Identities = 50/109 (45%), Positives = 62/109 (56%)
Frame = +3
Query: 177 ISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRY 356
IS P +++ EP VL ++ D E +PRG P RQRFR F Y
Sbjct: 4 ISPDPQTLVSSEPNKVL------------GMETPGDQEAIPRGDSADPETFRQRFRWFCY 51
Query: 357 EDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR 503
+ AGPR L QL +L QWLRPDIHTKEQI+E+LV EQ +LP E+R
Sbjct: 52 SEVAGPRKALNQLWDLCIQWLRPDIHTKEQILELLVFEQFLTILPGEIR 100
>ref|XP_541336.2| PREDICTED: similar to Zinc finger protein 42 (Myeloid zinc finger
1) (MZF-1) (Zinc finger and SCAN domain containing
protein 6) [Canis familiaris].
Length = 904
Score = 89.0 bits (219), Expect = 7e-18
Identities = 46/88 (52%), Positives = 62/88 (70%)
Frame = +3
Query: 267 KDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 446
+DSEE+ E R P P A+RQRFR F YE+A GP++ L QL+EL QWLRP++H+KEQ
Sbjct: 188 EDSEEEGEAT-RWDP-GPEAARQRFRHFHYEEAVGPQEALAQLRELCCQWLRPEVHSKEQ 245
Query: 447 IVEMLVQEQLQAVLPEELRARAQRCQPG 530
++E+LV EQ LP E++A + QPG
Sbjct: 246 MLELLVLEQFLCALPPEIQACVEGQQPG 273
>ref|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (Zinc finger and SCAN
domain containing protein 15) [Canis familiaris].
Length = 491
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/66 (62%), Positives = 53/66 (80%)
Frame = +3
Query: 330 RQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRAR 509
RQRFR+F Y D+AGPR+ L QL+EL QWLRP+++TKEQI+E+LV EQ A+LPEEL+A
Sbjct: 48 RQRFRQFGYSDSAGPREALSQLRELCHQWLRPEVNTKEQILELLVLEQFLAILPEELQAW 107
Query: 510 AQRCQP 527
+ QP
Sbjct: 108 LREYQP 113
>ref|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (Zinc finger protein
FPM315) [Canis familiaris].
Length = 684
Score = 87.8 bits (216), Expect = 2e-17
Identities = 38/71 (53%), Positives = 55/71 (77%)
Frame = +3
Query: 315 TPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPE 494
+P AS RFR+FR+++AAGPR+ L +LQEL +WLRP++ TKEQI+E+LV EQ +LP+
Sbjct: 36 SPEASHLRFRRFRFQEAAGPREALSRLQELCHEWLRPEMRTKEQILELLVLEQFLTILPQ 95
Query: 495 ELRARAQRCQP 527
E+++R Q P
Sbjct: 96 EIQSRVQELHP 106
>ref|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 homolog (Zfp-38)
(NY-REN-21 antigen) (Zinc finger and SCAN domain
containing protein 21) [Canis familiaris].
Length = 598
Score = 87.4 bits (215), Expect = 2e-17
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = +3
Query: 234 PPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQ 413
PPQV+ P KD EE+ + +P + RQRFR+F Y D GPR+ L QL+ L +
Sbjct: 144 PPQVR-GPVVVKDEEEEGKCLP-----SLEVFRQRFRQFGYHDTPGPREALSQLRVLCCE 197
Query: 414 WLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
WLRP+IHTKEQI+E+LV EQ +LP+EL+A Q P
Sbjct: 198 WLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCP 235
>ref|XP_546971.2| PREDICTED: similar to zinc finger protein 498 isoform 1 [Canis
familiaris].
Length = 546
Score = 86.3 bits (212), Expect = 4e-17
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Frame = +3
Query: 198 MLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPL---TPAASRQRFRKFRYEDAA 368
ML E P + Q+ VP + + +P GR +P R RFR+FRY++AA
Sbjct: 1 MLKERPGMAEDPQQQMGVPVVKLE------KELPWGRGREDPSPETFRLRFRQFRYQEAA 54
Query: 369 GPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA 506
GP++ LR+LQEL QWLRP++HTKEQI+E+LV EQ +LP E A
Sbjct: 55 GPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYA 100
>ref|XP_547697.2| PREDICTED: similar to zinc finger protein 496 [Canis familiaris].
Length = 587
Score = 85.5 bits (210), Expect = 8e-17
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Frame = +3
Query: 237 PQVQVPPESFKD----SEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQEL 404
P+V P ES + S P+G +P +SR+ FR+FRY++AAGPR+ L +L +L
Sbjct: 7 PRVLAPKESEEPRKMRSPPGENPSPQGELPSPESSRRLFRRFRYQEAAGPREALHRLWDL 66
Query: 405 AGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR--ARAQRCQPGVRITG*ISLLASCSAY 578
WLRP+ HTKEQI+E+LV EQ A+LP E++ RAQ + G + + L
Sbjct: 67 CRGWLRPERHTKEQILELLVLEQFLAILPREIQGWVRAQEPESGDQAVAAVEALEREPGR 126
Query: 579 MWE 587
W+
Sbjct: 127 PWQ 129
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,519,034
Number of extensions: 1156092
Number of successful extensions: 4550
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 4547
Number of HSP's successfully gapped: 60
Length of query: 345
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 241
Effective length of database: 15,407,560
Effective search space: 3713221960
Effective search space used: 3713221960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007469
(1037 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_361012.2| SCAN domain-containing protein 1 isoform 2 [Hom... 116 3e-26
Alignment gi|NP_057642.1| SCAN domain-containing protein 1 isoform 1 [Hom... 116 3e-26
Alignment gi|NP_116141.1| zinc finger protein 496 [Homo sapiens]. 90 4e-18
Alignment gi|NP_001007170.1| zinc finger protein 483 isoform b [Homo sapi... 89 5e-18
Alignment gi|NP_597721.2| zinc finger protein 483 isoform a [Homo sapiens]. 89 5e-18
Alignment gi|NP_932172.1| myeloid zinc finger 1 isoform 2 [Homo sapiens]. 88 1e-17
Alignment gi|NP_003413.2| myeloid zinc finger 1 isoform 1 [Homo sapiens]. 88 1e-17
Alignment gi|NP_001012458.1| zinc finger and SCAN domain-containing prote... 88 1e-17
Alignment gi|NP_660090.2| zinc finger protein 498 [Homo sapiens]. 88 1e-17
Alignment gi|NP_005732.2| zinc finger protein 263 [Homo sapiens]. 86 4e-17
>ref|NP_361012.2| SCAN domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 242
Score = 116 bits (291), Expect = 3e-26
Identities = 66/122 (54%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Frame = +3
Query: 183 ALPNEMLAEEPEVVL-IAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYE 359
A+P A + L + P V V P++ ++E P G L P RQRFR+FRY+
Sbjct: 123 AIPTPRAAASAALELPLGPAPVSVAPQA--EAEARSTPGPAGSRLGPETFRQRFRQFRYQ 180
Query: 360 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRI 539
DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRI
Sbjct: 181 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRI 240
Query: 540 TG 545
TG
Sbjct: 241 TG 242
>ref|NP_057642.1| SCAN domain-containing protein 1 isoform 1 [Homo sapiens].
Length = 179
Score = 116 bits (291), Expect = 3e-26
Identities = 66/122 (54%), Positives = 80/122 (65%), Gaps = 1/122 (0%)
Frame = +3
Query: 183 ALPNEMLAEEPEVVL-IAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYE 359
A+P A + L + P V V P++ ++E P G L P RQRFR+FRY+
Sbjct: 60 AIPTPRAAASAALELPLGPAPVSVAPQA--EAEARSTPGPAGSRLGPETFRQRFRQFRYQ 117
Query: 360 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRI 539
DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRI
Sbjct: 118 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRI 177
Query: 540 TG 545
TG
Sbjct: 178 TG 179
>ref|NP_116141.1| zinc finger protein 496 [Homo sapiens].
Length = 587
Score = 89.7 bits (221), Expect = 4e-18
Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 6/123 (4%)
Frame = +3
Query: 237 PQVQVPPESFKD----SEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQEL 404
P+V P ES + S P+G +P +SR+ FR+FRY++AAGPR+ L++L +L
Sbjct: 7 PRVLAPKESEEPRKMRSPPGENPSPQGELPSPESSRRLFRRFRYQEAAGPREALQRLWDL 66
Query: 405 AGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA--RAQRCQPGVRITG*ISLLASCSAY 578
G WLRP+ HTKEQI+E+LV EQ A+LP E+++ RAQ + G + + L
Sbjct: 67 CGGWLRPERHTKEQILELLVLEQFLAILPREIQSWVRAQEPESGEQAVAAVEALEREPGR 126
Query: 579 MWE 587
W+
Sbjct: 127 PWQ 129
>ref|NP_001007170.1| zinc finger protein 483 isoform b [Homo sapiens].
Length = 256
Score = 89.4 bits (220), Expect = 5e-18
Identities = 49/104 (47%), Positives = 60/104 (57%)
Frame = +3
Query: 192 NEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAG 371
N+M A PE +A + P E+ E + RG + RQRFR F Y + AG
Sbjct: 8 NKMTAISPEPQTLASTEQNEVPRVVTSGEQ--EAILRGNAADAESFRQRFRWFCYSEVAG 65
Query: 372 PRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR 503
PR L QL EL QWLRPDIHTKEQI+E+LV EQ +LP E+R
Sbjct: 66 PRKALSQLWELCNQWLRPDIHTKEQILELLVFEQFLTILPGEIR 109
>ref|NP_597721.2| zinc finger protein 483 isoform a [Homo sapiens].
Length = 744
Score = 89.4 bits (220), Expect = 5e-18
Identities = 49/104 (47%), Positives = 60/104 (57%)
Frame = +3
Query: 192 NEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAG 371
N+M A PE +A + P E+ E + RG + RQRFR F Y + AG
Sbjct: 8 NKMTAISPEPQTLASTEQNEVPRVVTSGEQ--EAILRGNAADAESFRQRFRWFCYSEVAG 65
Query: 372 PRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR 503
PR L QL EL QWLRPDIHTKEQI+E+LV EQ +LP E+R
Sbjct: 66 PRKALSQLWELCNQWLRPDIHTKEQILELLVFEQFLTILPGEIR 109
>ref|NP_932172.1| myeloid zinc finger 1 isoform 2 [Homo sapiens].
Length = 734
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Frame = +3
Query: 231 APPQVQVPPE-SFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELA 407
APP+ + P +DSEE+ E P A+R RFR FRYE+A GP++ L QL+EL
Sbjct: 12 APPEDEGPVMVKLEDSEEEGEAALWDPG--PEAARLRFRCFRYEEATGPQEALAQLRELC 69
Query: 408 GQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 530
QWLRP++ +KEQ++E+LV EQ LP E++AR Q +PG
Sbjct: 70 RQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPG 110
>ref|NP_003413.2| myeloid zinc finger 1 isoform 1 [Homo sapiens].
Length = 734
Score = 87.8 bits (216), Expect = 1e-17
Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Frame = +3
Query: 231 APPQVQVPPE-SFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELA 407
APP+ + P +DSEE+ E P A+R RFR FRYE+A GP++ L QL+EL
Sbjct: 12 APPEDEGPVMVKLEDSEEEGEAALWDPG--PEAARLRFRCFRYEEATGPQEALAQLRELC 69
Query: 408 GQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 530
QWLRP++ +KEQ++E+LV EQ LP E++AR Q +PG
Sbjct: 70 RQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPG 110
>ref|NP_001012458.1| zinc finger and SCAN domain-containing protein 23 [Homo sapiens].
Length = 389
Score = 87.8 bits (216), Expect = 1e-17
Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 5/92 (5%)
Frame = +3
Query: 267 KDSEEDLETVP-----RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDI 431
K+ EE+ P R P T R+RFR+F Y+++ GPR+ L++LQEL QWLRP++
Sbjct: 22 KEEEEEHSCGPESGLSRNNPHTREIFRRRFRQFCYQESPGPREALQRLQELCHQWLRPEM 81
Query: 432 HTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
HTKEQI+E+LV EQ +LPEEL+A ++ +P
Sbjct: 82 HTKEQILELLVLEQFLTILPEELQAWVRQHRP 113
>ref|NP_660090.2| zinc finger protein 498 [Homo sapiens].
Length = 544
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Frame = +3
Query: 198 MLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPL---TPAASRQRFRKFRYEDAA 368
ML E PE+ Q+ +P + + +P GR +P R RFR+FRY++AA
Sbjct: 1 MLKEHPEMAEAPQQQLGIPVVKLE------KELPWGRGREDPSPETFRLRFRQFRYQEAA 54
Query: 369 GPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA 506
GP++ LR+LQEL +WLRP++HTKEQI+E+LV EQ +LP E A
Sbjct: 55 GPQEALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPREFYA 100
>ref|NP_005732.2| zinc finger protein 263 [Homo sapiens].
Length = 683
Score = 86.3 bits (212), Expect = 4e-17
Identities = 38/71 (53%), Positives = 54/71 (76%)
Frame = +3
Query: 315 TPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPE 494
+P AS RFR+FR+++AAGPR+ L +LQEL WLRP++ TKEQI+E+LV EQ +LP+
Sbjct: 36 SPEASHLRFRRFRFQEAAGPREALSRLQELCHGWLRPEMRTKEQILELLVLEQFLTILPQ 95
Query: 495 ELRARAQRCQP 527
E+++R Q P
Sbjct: 96 EIQSRVQELHP 106
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,850,908
Number of extensions: 1139327
Number of successful extensions: 4374
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 4362
Number of HSP's successfully gapped: 81
Length of query: 345
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 242
Effective length of database: 14,901,872
Effective search space: 3606253024
Effective search space used: 3606253024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007469
(1037 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064651.2| paroxisome proliferative activated receptor, ga... 112 6e-25
Alignment gi|NP_001034204.1| zinc finger protein with KRAB and SCAN domai... 89 7e-18
Alignment gi|NP_665818.2| myeloid zinc finger 1 [Mus musculus]. 88 1e-17
Alignment gi|NP_683726.2| zinc finger protein 263 [Mus musculus]. 88 1e-17
Alignment gi|NP_001038170.1| zinc finger and SCAN domain-containing prote... 87 2e-17
Alignment gi|NP_001038169.1| zinc finger and SCAN domain-containing prote... 87 2e-17
Alignment gi|NP_001038168.1| zinc finger and SCAN domain-containing prote... 87 2e-17
Alignment gi|NP_035887.2| zinc finger and SCAN domain-containing protein ... 87 2e-17
Alignment gi|NP_001074900.1| zinc finger protein 498 [Mus musculus]. 87 2e-17
Alignment gi|NP_766529.3| zinc finger protein 496 isoform 1 [Mus musculus]. 87 3e-17
>ref|NP_064651.2| paroxisome proliferative activated receptor, gamma, coactivator 1
[Mus musculus].
Length = 142
Score = 112 bits (279), Expect = 6e-25
Identities = 67/135 (49%), Positives = 78/135 (57%), Gaps = 8/135 (5%)
Frame = +3
Query: 165 QNDDISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRG-RPLTPAASR--- 332
Q+ A P E + +P P + L T P L P ASR
Sbjct: 8 QDPQSPAAPPEQQEGAGDCAAPSPDSGSSPAPELPGAPAALNTAPYADAALRPGASRPGP 67
Query: 333 ----QRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 500
QRFR+FRY+DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQLQA+LPE
Sbjct: 68 ETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLQAILPEAA 127
Query: 501 RARAQRCQPGVRITG 545
RAR R + VRITG
Sbjct: 128 RARRLRRRADVRITG 142
>ref|NP_001034204.1| zinc finger protein with KRAB and SCAN domains 4 [Mus musculus].
Length = 480
Score = 88.6 bits (218), Expect = 7e-18
Identities = 64/154 (41%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Frame = +3
Query: 180 SALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYE 359
SA N AEE +L+ V+V E E ET G P P SRQRFR FRY
Sbjct: 8 SAALNARSAEEGTGLLV----VKVEQEEASPLAE--ETSWLGSP-GPDRSRQRFRAFRYP 60
Query: 360 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR--ARAQRCQPGV 533
+AAGPR L +L+EL QWLRPD+H+KEQI+E+LV EQ +LP EL+ R Q G
Sbjct: 61 EAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQTWVREQHPDSGE 120
Query: 534 RITG*ISLL------ASCSAYMWEVSKGSLCCKI 617
+ + L E S+ LCCK+
Sbjct: 121 EVVALLEYLDRQLDDTPPQVSTGEWSRELLCCKV 154
>ref|NP_665818.2| myeloid zinc finger 1 [Mus musculus].
Length = 735
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/100 (46%), Positives = 63/100 (63%)
Frame = +3
Query: 231 APPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAG 410
APP+ + +DS+ D E A+R RFR FRYEDA GP++ L QL+EL
Sbjct: 12 APPENEPALVKLEDSDSDDEREDILWDPGLEAARLRFRCFRYEDAIGPQEALAQLRELCH 71
Query: 411 QWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 530
QWLRP++H+KEQ++E+LV EQ LP E++A+ Q PG
Sbjct: 72 QWLRPEVHSKEQVLELLVLEQFLGALPPEIQAQVQGQWPG 111
>ref|NP_683726.2| zinc finger protein 263 [Mus musculus].
Length = 680
Score = 87.8 bits (216), Expect = 1e-17
Identities = 46/108 (42%), Positives = 67/108 (62%)
Frame = +3
Query: 204 AEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDV 383
++EPE +LI + +D E P +P AS RFR+FR++DA GPR+
Sbjct: 9 SQEPEGLLIVKLE--------EDCAWSHEVPPPEPEPSPEASHLRFRRFRFQDAPGPREA 60
Query: 384 LRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
L +LQEL WLRP++ TKEQI+E+LV EQ +LP+E+++R Q +P
Sbjct: 61 LSRLQELCRGWLRPEMRTKEQILELLVLEQFLTILPQEIQSRVQELRP 108
>ref|NP_001038170.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.4 bits (215), Expect = 2e-17
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Frame = +3
Query: 189 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------SEEDLETVPRGRPLTP 320
P+ + AEE E P +++ +SFK +EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 321 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 500
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 501 RARAQRCQP 527
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_001038169.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.4 bits (215), Expect = 2e-17
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Frame = +3
Query: 189 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------SEEDLETVPRGRPLTP 320
P+ + AEE E P +++ +SFK +EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 321 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 500
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 501 RARAQRCQP 527
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_001038168.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.4 bits (215), Expect = 2e-17
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Frame = +3
Query: 189 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------SEEDLETVPRGRPLTP 320
P+ + AEE E P +++ +SFK +EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 321 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 500
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 501 RARAQRCQP 527
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_035887.2| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.4 bits (215), Expect = 2e-17
Identities = 53/129 (41%), Positives = 73/129 (56%), Gaps = 16/129 (12%)
Frame = +3
Query: 189 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------SEEDLETVPRGRPLTP 320
P+ + AEE E P +++ +SFK +EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 321 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 500
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 501 RARAQRCQP 527
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_001074900.1| zinc finger protein 498 [Mus musculus].
Length = 543
Score = 87.0 bits (214), Expect = 2e-17
Identities = 48/100 (48%), Positives = 65/100 (65%)
Frame = +3
Query: 198 MLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPR 377
ML E E+ PQ Q+ K E++L G +P A R RFR+FRY++AAGP+
Sbjct: 1 MLKERLEMA--GDPQQQMGAPVVK-LEKELPWGRGGEDSSPEAFRLRFRQFRYQEAAGPQ 57
Query: 378 DVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEE 497
+ LR+LQEL +WLRP++HTKEQI+E+LV EQ +LP E
Sbjct: 58 EALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPRE 97
>ref|NP_766529.3| zinc finger protein 496 isoform 1 [Mus musculus].
Length = 585
Score = 86.7 bits (213), Expect = 3e-17
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 6/123 (4%)
Frame = +3
Query: 237 PQVQVPPESFKD----SEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQEL 404
P+V P ES + S P+G P +P +SR+ FR+FRY++AAGPR+ L++L EL
Sbjct: 7 PRVLAPKESEEPRKMRSPPGENPSPQGEPPSPESSRRLFRRFRYQEAAGPREALQRLWEL 66
Query: 405 AGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA--RAQRCQPGVRITG*ISLLASCSAY 578
WLR + HTKEQI+E+LV EQ A+LP E+++ RAQ + G + + L
Sbjct: 67 CRGWLRLERHTKEQILELLVLEQFLAILPWEIQSWVRAQEPESGEQAVAAVEALEREPGR 126
Query: 579 MWE 587
W+
Sbjct: 127 PWQ 129
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,577,448
Number of extensions: 948745
Number of successful extensions: 3668
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 3656
Number of HSP's successfully gapped: 46
Length of query: 345
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 243
Effective length of database: 12,553,887
Effective search space: 3050594541
Effective search space used: 3050594541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007469
(1037 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230507.1| SCAN domain-containing 1-like [Sus scrofa]. 285 2e-77
Alignment gi|XP_003134467.1| PREDICTED: SCAN domain-containing protein 1-... 110 2e-24
Alignment gi|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-conta... 88 9e-18
Alignment gi|XP_003124723.1| PREDICTED: zinc finger protein 263 [Sus scro... 86 3e-17
Alignment gi|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-... 86 3e-17
Alignment gi|XP_003127824.1| PREDICTED: zinc finger and SCAN domain-conta... 86 4e-17
Alignment gi|NP_001230304.1| zinc finger protein 24 [Sus scrofa]. 86 4e-17
Alignment gi|XP_003124369.2| PREDICTED: zinc finger protein 394-like [Sus... 85 8e-17
Alignment gi|XP_003132046.1| PREDICTED: zinc finger protein 18 [Sus scrof... 84 1e-16
Alignment gi|XP_003356633.1| PREDICTED: zinc finger and SCAN domain-conta... 84 1e-16
>ref|NP_001230507.1| SCAN domain-containing 1-like [Sus scrofa].
Length = 142
Score = 285 bits (730), Expect = 2e-77
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +3
Query: 120 MEMEGDPEMQRNGEIQNDDISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVP 299
MEMEGDPEMQRNGEIQNDDISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVP
Sbjct: 1 MEMEGDPEMQRNGEIQNDDISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVP 60
Query: 300 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 479
RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ
Sbjct: 61 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 120
Query: 480 AVLPEELRARAQRCQPGVRITG 545
AVLPEELRARAQRCQPGVRITG
Sbjct: 121 AVLPEELRARAQRCQPGVRITG 142
>ref|XP_003134467.1| PREDICTED: SCAN domain-containing protein 1-like [Sus scrofa].
Length = 179
Score = 110 bits (274), Expect = 2e-24
Identities = 58/95 (61%), Positives = 67/95 (70%)
Frame = +3
Query: 261 SFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTK 440
SF ++ P G P RQRFR+FRY+DAAGPR+ RQL+EL+ QWLRPDI TK
Sbjct: 85 SFAEAAPRSPPGPGGSRPGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTK 144
Query: 441 EQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 545
EQIVEMLVQEQL A+LPE RAR R + VRITG
Sbjct: 145 EQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-containing protein 23-like
isoform 1 [Sus scrofa].
Length = 389
Score = 87.8 bits (216), Expect = 9e-18
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +3
Query: 300 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 479
R P T R+RFR+F Y++ GPR+ LR+LQEL QWLRP++H+KEQI+E+LV EQ
Sbjct: 38 RDNPHTREIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHSKEQILELLVLEQFL 97
Query: 480 AVLPEELRARAQRCQPG 530
+LPEEL+A + +PG
Sbjct: 98 TILPEELQAWVREHRPG 114
>ref|XP_003124723.1| PREDICTED: zinc finger protein 263 [Sus scrofa].
Length = 684
Score = 86.3 bits (212), Expect = 3e-17
Identities = 40/77 (51%), Positives = 57/77 (74%)
Frame = +3
Query: 297 PRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQL 476
P RP +P AS RFR+FR+++A+GPR+ L +LQEL WLRP++ TKEQI+E+LV EQ
Sbjct: 31 PDPRP-SPEASHLRFRRFRFQEASGPREALSRLQELCHGWLRPEMRTKEQILELLVLEQF 89
Query: 477 QAVLPEELRARAQRCQP 527
+LP+E+++R Q P
Sbjct: 90 LTILPQEIQSRVQELHP 106
>ref|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-like [Sus scrofa].
Length = 1323
Score = 85.9 bits (211), Expect = 3e-17
Identities = 49/117 (41%), Positives = 70/117 (59%)
Frame = +3
Query: 177 ISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRY 356
+SAL + E+ E++ +V+V E +E + + T SRQRFR+ Y
Sbjct: 8 LSALAGQASEEQGEII-----KVKVKEEDHIWDQESC--IQKNLSHTRELSRQRFRQLCY 60
Query: 357 EDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
++ GPR+ L QL+EL QWL P+IHTKEQI+E+LV EQL +LPEEL+A + P
Sbjct: 61 QETPGPREALSQLRELCRQWLSPEIHTKEQILELLVLEQLLTILPEELQAWVREHHP 117
>ref|XP_003127824.1| PREDICTED: zinc finger and SCAN domain-containing protein 20 [Sus
scrofa].
Length = 1045
Score = 85.5 bits (210), Expect = 4e-17
Identities = 48/106 (45%), Positives = 61/106 (57%)
Frame = +3
Query: 210 EPEVVLIAPPQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLR 389
EPE +LI + + E+DL VP P ASRQRFR+F+Y DAAGP +
Sbjct: 16 EPEELLIVKLEEDSWRPDSQPQEKDLNPVPG-----PEASRQRFRQFQYRDAAGPHEAFS 70
Query: 390 QLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
QL L WLRP+I KEQI+E+LV EQ +LP E++A Q P
Sbjct: 71 QLWALCCHWLRPEIRLKEQILELLVLEQFLTILPREVQAWVQARHP 116
>ref|NP_001230304.1| zinc finger protein 24 [Sus scrofa].
Length = 368
Score = 85.5 bits (210), Expect = 4e-17
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Frame = +3
Query: 207 EEPEVVLIAPPQ-----VQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAG 371
EE +++I P ++V E D EE ++P P RQRFR+F Y+D+ G
Sbjct: 7 EEDSILIIPTPDEEEKILRVKLEEDPDGEEG-SSIPWNHLPDPEVFRQRFRQFGYQDSPG 65
Query: 372 PRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 527
PR+ + QL+EL WLRP+ HTKEQI+E++V EQ A+LP+EL+ + P
Sbjct: 66 PREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHP 117
>ref|XP_003124369.2| PREDICTED: zinc finger protein 394-like [Sus scrofa].
Length = 583
Score = 84.7 bits (208), Expect = 8e-17
Identities = 41/86 (47%), Positives = 58/86 (67%)
Frame = +3
Query: 270 DSEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQI 449
DS E+ P G P SR FR+FRYE+ AGP + L +L+EL +WLRP++H+KEQI
Sbjct: 29 DSAGGRESNPTGDCQDPEISRGHFRRFRYEEVAGPEEALSRLRELCRRWLRPEMHSKEQI 88
Query: 450 VEMLVQEQLQAVLPEELRARAQRCQP 527
+E+LV EQ +LP+EL+A ++ P
Sbjct: 89 LELLVLEQFLTILPQELQAWVRKHCP 114
>ref|XP_003132046.1| PREDICTED: zinc finger protein 18 [Sus scrofa].
Length = 551
Score = 84.3 bits (207), Expect = 1e-16
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Frame = +3
Query: 186 LPNEMLAEEPEVVLIAP-PQVQVPPESFKDSEEDLETVPRGRPLTPAASRQRFRKFRYED 362
+P++++ EP L+ P P + F + P G P +P + Q FR+F Y+
Sbjct: 3 VPSQVMPMEPGQALVLPLPLAKAEESPFPGPD----AAPPGEPSSPETACQLFRQFPYQV 58
Query: 363 AAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 530
+GP + LRQL++L QWL+P++HTKEQI+EML+ EQ +LP E++ ++ PG
Sbjct: 59 MSGPHETLRQLRKLCFQWLQPELHTKEQILEMLLLEQFLTILPGEIQMWVRKQCPG 114
>ref|XP_003356633.1| PREDICTED: zinc finger and SCAN domain-containing protein 23-like
isoform 2 [Sus scrofa].
Length = 360
Score = 84.3 bits (207), Expect = 1e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +3
Query: 300 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 479
R P T R+RFR+F Y++ GPR+ LR+LQEL QWLRP++H+KEQI+E+LV EQ
Sbjct: 38 RDNPHTREIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHSKEQILELLVLEQFL 97
Query: 480 AVLPEELRA 506
+LPEEL+A
Sbjct: 98 TILPEELQA 106
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,033,790
Number of extensions: 763742
Number of successful extensions: 2975
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 2967
Number of HSP's successfully gapped: 43
Length of query: 345
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 245
Effective length of database: 8,854,232
Effective search space: 2169286840
Effective search space used: 2169286840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007469
(1037 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1413 0.0
Sscrofa_Chr07 111 8e-22
gb|GL892350.2| Sus scrofa unplaced genomic scaffold ChrUScaf237 84 2e-13
Sscrofa_Chr17 84 2e-13
Sscrofa_Chr04 68 1e-08
>Sscrofa_Chr06
|| Length = 157765593
Score = 1413 bits (713), Expect = 0.0
Identities = 731/737 (99%)
Strand = Plus / Plus
Query: 86 aggagtctgagaaatcctctcccagagttctagaatggagatggaaggggacccagagat 145
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 74038752 aggagtctgagaaatcctcttctagagttctagaatggagatggaaggggacccagagat 74038811
Query: 146 gcaaagaaatggggaaatccagaatgatgacataagtgcactaccaaatgagatgttggc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038812 gcaaagaaatggggaaatccagaatgatgacataagtgcactaccaaatgagatgttggc 74038871
Query: 206 tgaggagccagaggtggtcctgatagcacctccccaggtccaggtgccaccagagagctt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038872 tgaggagccagaggtggtcctgatagcacctccccaggtccaggtgccaccagagagctt 74038931
Query: 266 caaagactctgaagaagacctggagaccgtgccccgagggagacctctcacccctgcagc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038932 caaagactctgaagaagacctggagaccgtgccccgagggagacctctcacccctgcagc 74038991
Query: 326 ctccaggcagagattccggaagttccgctacgaggatgcggctgggcccagggatgtcct 385
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038992 ctccaggcagagattcaggaagttccgctacgaggatgcggctgggcccagggatgtcct 74039051
Query: 386 cagacagctccaggagcttgctggacagtggctgaggcccgacattcacacaaaggagca 445
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 74039052 cagacaactccaggagcttgccggacagtggctgaggcccgacattcacacaaaggagca 74039111
Query: 446 gattgtggaaatgctggtgcaggagcaactccaggctgtcctccctgaggagctcagagc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039112 gattgtggaaatgctggtgcaggagcaactccaggctgtcctccctgaggagctcagagc 74039171
Query: 506 cagggcacagagatgtcagcctggggtcagaatcactggctgaatctcgctgcttgcttc 565
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 74039172 cagggcacagagatgtcagcctggggtcagaatcactggctgaatctccctgcttgcttc 74039231
Query: 566 ttgctcagcctacatgtgggaagtaagcaaaggctctctctgttgcaagatcgagctgca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039232 ttgctcagcctacatgtgggaagtaagcaaaggctctctctgttgcaagatcgagctgca 74039291
Query: 626 ggcgtgggaaatctgaacctcagttttcttcgagcttgcctttgactagctgtaggaaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039292 ggcgtgggaaatctgaacctcagttttcttcgagcttgcctttgactagctgtaggaaga 74039351
Query: 686 atcagaacccatgcctggacccttttctggctgcagcagctctatttcctgggactgtga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039352 atcagaacccatgcctggacccttttctggctgcagcagctctatttcctgggactgtga 74039411
Query: 746 actccagaatgagtttccctgccctcttgttaggacaatcagcctgctgcttcgtttttg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039412 actccagaatgagtttccctgccctcttgttaggacaatcagcctgctgcttcgtttttg 74039471
Query: 806 ctctgctaagatgcccc 822
|||||||||||||||||
Sbjct: 74039472 ctctgctaagatgcccc 74039488
Score = 218 bits (110), Expect = 5e-54
Identities = 134/138 (97%), Gaps = 3/138 (2%)
Strand = Plus / Plus
Query: 880 aatgtacccaaagaggtgattgcctcagctttaatattcttgattcttgctgtggtggca 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039547 aatgtacccaaagaggtgattgcctcagctttaatattcttgattcttgctgtggtggca 74039606
Query: 940 tgaatggaagcttctgtaacccca-cagtaactcatttgggatgttcttg-aata-taaa 996
|||||||||||||||||||||||| |||||||||||||||||||| |||| |||| ||||
Sbjct: 74039607 tgaatggaagcttctgtaaccccaccagtaactcatttgggatgtccttgaaatattaaa 74039666
Query: 997 gttcggggtttttttttt 1014
||||||||||||||||||
Sbjct: 74039667 gttcggggtttttttttt 74039684
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 3 ttccttttcccggacccggtggagggccctctagtttcatcgcgagccgcccggtccccc 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74034486 ttccttttcccggacccggtggagggccctctagtttcatcgcgagccgcccggtccccc 74034545
Query: 63 cgccctctgaggggcacctgcgcagg 88
||||||||||||||||||||||||||
Sbjct: 74034546 cgccctctgaggggcacctgcgcagg 74034571
>Sscrofa_Chr07
|| Length = 134764511
Score = 111 bits (56), Expect = 8e-22
Identities = 93/104 (89%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 881 atgtacccaaagaggtgattgcctcagctttaatattcttgattcttgctgtggtggcat 940
||||| ||| ||| |||| ||| ||| ||||||||||||||| |||||||||||||| ||
Sbjct: 20356279 atgtatccatagaagtgactgcttcaactttaatattcttgactcttgctgtggtggaat 20356338
Query: 941 gaatggaagcttctgtaaccccac-agtaactcatttgggatgt 983
||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 20356339 gaatggaagcttctgtaaccctactggtaactcatttgggatgt 20356382
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 747 ctccagaatgagtttccctgccctcttgttaggacaatcagcctgctgctt 797
||||||||||||||||||| ||||||| ||| ||||||||||||| |||||
Sbjct: 20356165 ctccagaatgagtttccctaccctcttattaagacaatcagcctgatgctt 20356215
>gb|GL892350.2| Sus scrofa unplaced genomic scaffold ChrUScaf237
Length = 53720
Score = 83.8 bits (42), Expect = 2e-13
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 759 tttccctgccctcttgttaggacaatcagcctgctgcttcgtttttgctctgct 812
||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 15607 tttccctgccctcttgttaggacaatcagcctgctgctt-gtttttgccctgct 15555
>Sscrofa_Chr17
|| Length = 69701581
Score = 83.8 bits (42), Expect = 2e-13
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 759 tttccctgccctcttgttaggacaatcagcctgctgcttcgtttttgctctgct 812
||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 31572831 tttccctgccctcttgttaggacaatcagcctgctgctt-gtttttgccctgct 31572779
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 411 cagtggctgaggcccgacattcacacaaaggagcagattgtggaaatgctggtgcaggag 470
||||||||| |||||||||| | ||| ||||||||||| ||||| ||||||||||| |||
Sbjct: 44651141 cagtggctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagag 44651082
Query: 471 ca 472
||
Sbjct: 44651081 ca 44651080
>Sscrofa_Chr04
|| Length = 143465943
Score = 67.9 bits (34), Expect = 1e-08
Identities = 117/143 (81%), Gaps = 5/143 (3%)
Strand = Plus / Plus
Query: 614 gatcgagctgcaggcgtgggaaatctgaacctcagttttcttcgagcttgcctttgacta 673
|||| |||||||| | |||||| | ||||||||||||| ||| |||||||||||||||||
Sbjct: 77456813 gatccagctgcagccatgggaact-tgaacctcagtttcctttgagcttgcctttgacta 77456871
Query: 674 gctgtaggaagaatcagaacccatgcctggacc----cttttctggctgcagcagctcta 729
| |||| | |||||| ||||| |||| ||||| |||| |||| || |||||
Sbjct: 77456872 gttgtaataggaatcaaaacccgtgcccggacctctttttttttggccaaggcggctctc 77456931
Query: 730 tttcctgggactgtgaactccag 752
|||||||||||||||||||||||
Sbjct: 77456932 tttcctgggactgtgaactccag 77456954
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,842,457
Number of extensions: 348
Number of successful extensions: 348
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 9
Length of query: 1037
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1016
Effective length of database: 2,808,413,156
Effective search space: 2853347766496
Effective search space used: 2853347766496
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)