Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007473
(1044 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098840.1| SCAN domain-containing protein 1-like [Bos t... 197 1e-50
Alignment gi|XP_002688816.1| PREDICTED: SCAN domain containing protein 1-... 183 3e-46
Alignment gi|XP_001254653.2| PREDICTED: SCAN domain containing protein 1-... 183 3e-46
Alignment gi|NP_001073059.1| SCAN domain-containing protein 1 [Bos taurus]. 109 4e-24
Alignment gi|NP_001193233.1| myeloid zinc finger 1 [Bos taurus]. 95 1e-19
Alignment gi|XP_002695498.1| PREDICTED: zinc finger protein 42 (myeloid-s... 95 1e-19
Alignment gi|NP_001192439.1| zinc finger protein with KRAB and SCAN domai... 86 4e-17
Alignment gi|NP_001069627.1| zinc finger and SCAN domain containing 25 [B... 86 4e-17
Alignment gi|XP_002698259.1| PREDICTED: zinc finger protein 197-like [Bos... 86 4e-17
Alignment gi|NP_001193423.1| zinc finger protein 18 [Bos taurus]. 86 7e-17
>ref|NP_001098840.1| SCAN domain-containing protein 1-like [Bos taurus].
Length = 116
Score = 197 bits (501), Expect = 1e-50
Identities = 100/116 (86%), Positives = 105/116 (90%), Gaps = 1/116 (0%)
Frame = +1
Query: 202 LAEEPEVVLIAPPQVQVPPESF-KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPR 378
+AEEPE +LIAPPQVQVPPES +D E+DLETVPR PL PAASRQRFR+FRYEDAAGPR
Sbjct: 1 MAEEPEGILIAPPQVQVPPESLDEDSEDDLETVPRRSPLNPAASRQRFRQFRYEDAAGPR 60
Query: 379 DVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 546
DVLR LQELAGQWLRPDIHTKEQIVEMLVQEQ QAVLPEELRA A RCQPGVRITG
Sbjct: 61 DVLRHLQELAGQWLRPDIHTKEQIVEMLVQEQFQAVLPEELRAWALRCQPGVRITG 116
>ref|XP_002688816.1| PREDICTED: SCAN domain containing protein 1-like [Bos taurus].
Length = 113
Score = 183 bits (464), Expect = 3e-46
Identities = 91/115 (79%), Positives = 100/115 (86%)
Frame = +1
Query: 202 LAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRD 381
+AEEPE +LIAPPQVQVPPES E+DLETVPR PL PAASRQRFR+F YEDAAGPR
Sbjct: 1 MAEEPEDILIAPPQVQVPPESLD--EDDLETVPRRSPLNPAASRQRFREFHYEDAAGPRG 58
Query: 382 VLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 546
+LR LQ+L+GQWLRPDIH KE++VEMLVQEQ QAVLPEELR AQRCQPGVRITG
Sbjct: 59 ILRHLQQLSGQWLRPDIHMKEKLVEMLVQEQFQAVLPEELRPWAQRCQPGVRITG 113
>ref|XP_001254653.2| PREDICTED: SCAN domain containing protein 1-like [Bos taurus].
Length = 113
Score = 183 bits (464), Expect = 3e-46
Identities = 91/115 (79%), Positives = 100/115 (86%)
Frame = +1
Query: 202 LAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRD 381
+AEEPE +LIAPPQVQVPPES E+DLETVPR PL PAASRQRFR+F YEDAAGPR
Sbjct: 1 MAEEPEDILIAPPQVQVPPESLD--EDDLETVPRRSPLNPAASRQRFREFHYEDAAGPRG 58
Query: 382 VLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 546
+LR LQ+L+GQWLRPDIH KE++VEMLVQEQ QAVLPEELR AQRCQPGVRITG
Sbjct: 59 ILRHLQQLSGQWLRPDIHMKEKLVEMLVQEQFQAVLPEELRPWAQRCQPGVRITG 113
>ref|NP_001073059.1| SCAN domain-containing protein 1 [Bos taurus].
Length = 178
Score = 109 bits (273), Expect = 4e-24
Identities = 56/83 (67%), Positives = 63/83 (75%)
Frame = +1
Query: 298 PRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQL 477
P G P RQRFR+FRY+DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL
Sbjct: 96 PGGSRPGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQL 155
Query: 478 QAVLPEELRARAQRCQPGVRITG 546
A+LPE RAR R + VRITG
Sbjct: 156 LAILPEAARARRLRRRTDVRITG 178
>ref|NP_001193233.1| myeloid zinc finger 1 [Bos taurus].
Length = 734
Score = 94.7 bits (234), Expect = 1e-19
Identities = 46/85 (54%), Positives = 60/85 (70%)
Frame = +1
Query: 277 EEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVE 456
E+ E P L P A+RQ+FR+FRYE+AAGP L QL+EL QWLRP+ H+KEQ++E
Sbjct: 25 EDSEEDEPAAWDLGPEAARQQFRRFRYEEAAGPGQALAQLRELCRQWLRPEAHSKEQMLE 84
Query: 457 MLVQEQLQAVLPEELRARAQRCQPG 531
+LV EQ VLP E++AR + QPG
Sbjct: 85 LLVLEQFLGVLPPEIQARVRGQQPG 109
>ref|XP_002695498.1| PREDICTED: zinc finger protein 42 (myeloid-specific retinoic
acid-responsive)-like [Bos taurus].
Length = 734
Score = 94.7 bits (234), Expect = 1e-19
Identities = 46/85 (54%), Positives = 60/85 (70%)
Frame = +1
Query: 277 EEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVE 456
E+ E P L P A+RQ+FR+FRYE+AAGP L QL+EL QWLRP+ H+KEQ++E
Sbjct: 25 EDSEEDEPAAWDLGPEAARQQFRRFRYEEAAGPGQALAQLRELCRQWLRPEAHSKEQMLE 84
Query: 457 MLVQEQLQAVLPEELRARAQRCQPG 531
+LV EQ VLP E++AR + QPG
Sbjct: 85 LLVLEQFLGVLPPEIQARVRGQQPG 109
>ref|NP_001192439.1| zinc finger protein with KRAB and SCAN domains 1 [Bos taurus].
Length = 563
Score = 86.3 bits (212), Expect = 4e-17
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = +1
Query: 205 AEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDV 384
A+E + ++I + + E + L+ P P P RQRFR F Y++ GPR+
Sbjct: 17 AQEKDGIVIVKVEEEDEEEHMWGQDASLQESP---PPDPEVFRQRFRHFCYQNTFGPREA 73
Query: 385 LRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
L +L+EL QWLRP+IHTKEQI+E+LV EQ ++LP EL+A Q +P
Sbjct: 74 LSRLKELCHQWLRPEIHTKEQILELLVLEQFLSILPRELQAWLQEYRP 121
>ref|NP_001069627.1| zinc finger and SCAN domain containing 25 [Bos taurus].
Length = 152
Score = 86.3 bits (212), Expect = 4e-17
Identities = 48/103 (46%), Positives = 64/103 (62%)
Frame = +1
Query: 199 MLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPR 378
ML E P + PQ Q+ K E++L +P R RFR+FRY++AAGP+
Sbjct: 1 MLVERPGMA--EEPQQQMGGHVVK-LEKELPWGRTREDPSPETFRLRFRQFRYQEAAGPQ 57
Query: 379 DVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA 507
+ LR+LQEL QWLRP++HTKEQI+E+LV EQ +LP E A
Sbjct: 58 EALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYA 100
>ref|XP_002698259.1| PREDICTED: zinc finger protein 197-like [Bos taurus].
Length = 563
Score = 86.3 bits (212), Expect = 4e-17
Identities = 46/108 (42%), Positives = 66/108 (61%)
Frame = +1
Query: 205 AEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDV 384
A+E + ++I + + E + L+ P P P RQRFR F Y++ GPR+
Sbjct: 17 AQEKDGIVIVKVEEEDEEEHMWGQDASLQESP---PPDPEVFRQRFRHFCYQNTFGPREA 73
Query: 385 LRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
L +L+EL QWLRP+IHTKEQI+E+LV EQ ++LP EL+A Q +P
Sbjct: 74 LSRLKELCHQWLRPEIHTKEQILELLVLEQFLSILPRELQAWLQEYRP 121
>ref|NP_001193423.1| zinc finger protein 18 [Bos taurus].
Length = 550
Score = 85.5 bits (210), Expect = 7e-17
Identities = 37/81 (45%), Positives = 58/81 (71%)
Frame = +1
Query: 289 ETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQ 468
+ PRG P +P +RQ FR+F Y+ +GP + L+QL++L QWL+P++HTKEQI+EML+
Sbjct: 28 DATPRGEPSSPETARQLFRQFPYQVMSGPHETLQQLRKLCFQWLQPEVHTKEQILEMLML 87
Query: 469 EQLQAVLPEELRARAQRCQPG 531
EQ ++LP E++ ++ PG
Sbjct: 88 EQFLSILPGEIQTWVRKQCPG 108
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,301,481
Number of extensions: 1152896
Number of successful extensions: 4597
Number of sequences better than 1.0e-05: 82
Number of HSP's gapped: 4579
Number of HSP's successfully gapped: 82
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007473
(1044 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865437.1| PREDICTED: similar to SCAN domain-containing pr... 114 2e-25
Alignment gi|XP_852290.1| PREDICTED: similar to SCAN domain-containing pr... 114 2e-25
Alignment gi|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (... 92 1e-18
Alignment gi|XP_536869.2| PREDICTED: similar to zinc finger protein 99 [C... 90 4e-18
Alignment gi|XP_538786.2| PREDICTED: similar to Zinc finger protein 483 [... 89 7e-18
Alignment gi|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (... 88 1e-17
Alignment gi|XP_541336.2| PREDICTED: similar to Zinc finger protein 42 (M... 87 3e-17
Alignment gi|XP_546971.2| PREDICTED: similar to zinc finger protein 498 i... 86 4e-17
Alignment gi|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 ho... 86 6e-17
Alignment gi|XP_547697.2| PREDICTED: similar to zinc finger protein 496 [... 85 1e-16
>ref|XP_865437.1| PREDICTED: similar to SCAN domain-containing protein 1 isoform 3
[Canis familiaris].
Length = 179
Score = 114 bits (284), Expect = 2e-25
Identities = 64/120 (53%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Frame = +1
Query: 205 AEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLT------PAASRQRFRKFRYEDA 366
A P + + PP + PP + E PR P + P RQRFR+FRY+DA
Sbjct: 68 ASAPLELPVGPPALSSPPLA--------EAAPRSPPHSGGSRPGPETFRQRFRQFRYQDA 119
Query: 367 AGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 546
AGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRITG
Sbjct: 120 AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_852290.1| PREDICTED: similar to SCAN domain-containing protein 1 isoform 2
[Canis familiaris].
Length = 179
Score = 114 bits (284), Expect = 2e-25
Identities = 64/120 (53%), Positives = 76/120 (63%), Gaps = 6/120 (5%)
Frame = +1
Query: 205 AEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLT------PAASRQRFRKFRYEDA 366
A P + + PP + PP + E PR P + P RQRFR+FRY+DA
Sbjct: 68 ASAPLELPVGPPALSSPPLA--------EAAPRSPPHSGGSRPGPETFRQRFRQFRYQDA 119
Query: 367 AGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRITG 546
AGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRITG
Sbjct: 120 AGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG 179
>ref|XP_547160.2| PREDICTED: similar to Zinc finger protein 263 (Zinc finger protein
FPM315) [Canis familiaris].
Length = 684
Score = 91.7 bits (226), Expect = 1e-18
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = +1
Query: 268 KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 447
+DC E P +P AS RFR+FR+++AAGPR+ L +LQEL +WLRP++ TKEQ
Sbjct: 20 EDCAWSQELPPSDPGPSPEASHLRFRRFRFQEAAGPREALSRLQELCHEWLRPEMRTKEQ 79
Query: 448 IVEMLVQEQLQAVLPEELRARAQRCQP 528
I+E+LV EQ +LP+E+++R Q P
Sbjct: 80 ILELLVLEQFLTILPQEIQSRVQELHP 106
>ref|XP_536869.2| PREDICTED: similar to zinc finger protein 99 [Canis familiaris].
Length = 531
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = +1
Query: 268 KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 447
+D E P G P SRQRFR+FRY++AAGP + L +L+EL +WLRP++H+KEQ
Sbjct: 18 EDSRGGQEPDPPGSCQDPEKSRQRFRRFRYQEAAGPEEALSRLRELCRRWLRPELHSKEQ 77
Query: 448 IVEMLVQEQLQAVLPEELRARAQRCQP 528
I+E+LV EQ ++LP+EL+A ++ P
Sbjct: 78 ILELLVLEQFLSILPQELQAWVRKHSP 104
>ref|XP_538786.2| PREDICTED: similar to Zinc finger protein 483 [Canis familiaris].
Length = 718
Score = 89.0 bits (219), Expect = 7e-18
Identities = 50/109 (45%), Positives = 63/109 (57%)
Frame = +1
Query: 178 VSALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRY 357
+S P +++ EP VL ++ P D E +PRG P RQRFR F Y
Sbjct: 4 ISPDPQTLVSSEPNKVL----GMETPG--------DQEAIPRGDSADPETFRQRFRWFCY 51
Query: 358 EDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR 504
+ AGPR L QL +L QWLRPDIHTKEQI+E+LV EQ +LP E+R
Sbjct: 52 SEVAGPRKALNQLWDLCIQWLRPDIHTKEQILELLVFEQFLTILPGEIR 100
>ref|XP_547608.1| PREDICTED: similar to Zinc finger protein 397 (Zinc finger and SCAN
domain containing protein 15) [Canis familiaris].
Length = 491
Score = 88.2 bits (217), Expect = 1e-17
Identities = 41/66 (62%), Positives = 53/66 (80%)
Frame = +1
Query: 331 RQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRAR 510
RQRFR+F Y D+AGPR+ L QL+EL QWLRP+++TKEQI+E+LV EQ A+LPEEL+A
Sbjct: 48 RQRFRQFGYSDSAGPREALSQLRELCHQWLRPEVNTKEQILELLVLEQFLAILPEELQAW 107
Query: 511 AQRCQP 528
+ QP
Sbjct: 108 LREYQP 113
>ref|XP_541336.2| PREDICTED: similar to Zinc finger protein 42 (Myeloid zinc finger
1) (MZF-1) (Zinc finger and SCAN domain containing
protein 6) [Canis familiaris].
Length = 904
Score = 87.0 bits (214), Expect = 3e-17
Identities = 45/88 (51%), Positives = 61/88 (69%)
Frame = +1
Query: 268 KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 447
+D EE+ E R P P A+RQRFR F YE+A GP++ L QL+EL QWLRP++H+KEQ
Sbjct: 188 EDSEEEGEAT-RWDP-GPEAARQRFRHFHYEEAVGPQEALAQLRELCCQWLRPEVHSKEQ 245
Query: 448 IVEMLVQEQLQAVLPEELRARAQRCQPG 531
++E+LV EQ LP E++A + QPG
Sbjct: 246 MLELLVLEQFLCALPPEIQACVEGQQPG 273
>ref|XP_546971.2| PREDICTED: similar to zinc finger protein 498 isoform 1 [Canis
familiaris].
Length = 546
Score = 86.3 bits (212), Expect = 4e-17
Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 3/106 (2%)
Frame = +1
Query: 199 MLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPL---TPAASRQRFRKFRYEDAA 369
ML E P + Q+ VP + + +P GR +P R RFR+FRY++AA
Sbjct: 1 MLKERPGMAEDPQQQMGVPVVKLE------KELPWGRGREDPSPETFRLRFRQFRYQEAA 54
Query: 370 GPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA 507
GP++ LR+LQEL QWLRP++HTKEQI+E+LV EQ +LP E A
Sbjct: 55 GPQEALRELQELCRQWLRPELHTKEQILELLVLEQFLTILPREFYA 100
>ref|XP_546966.2| PREDICTED: similar to Zinc finger protein 38 homolog (Zfp-38)
(NY-REN-21 antigen) (Zinc finger and SCAN domain
containing protein 21) [Canis familiaris].
Length = 598
Score = 85.9 bits (211), Expect = 6e-17
Identities = 48/98 (48%), Positives = 63/98 (64%)
Frame = +1
Query: 235 PPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQ 414
PPQV+ P KD EE+ + +P + RQRFR+F Y D GPR+ L QL+ L +
Sbjct: 144 PPQVR-GPVVVKDEEEEGKCLP-----SLEVFRQRFRQFGYHDTPGPREALSQLRVLCCE 197
Query: 415 WLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
WLRP+IHTKEQI+E+LV EQ +LP+EL+A Q P
Sbjct: 198 WLRPEIHTKEQILELLVLEQFLTILPQELQAWVQEHCP 235
>ref|XP_547697.2| PREDICTED: similar to zinc finger protein 496 [Canis familiaris].
Length = 587
Score = 84.7 bits (208), Expect = 1e-16
Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Frame = +1
Query: 298 PRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQL 477
P+G +P +SR+ FR+FRY++AAGPR+ L +L +L WLRP+ HTKEQI+E+LV EQ
Sbjct: 31 PQGELPSPESSRRLFRRFRYQEAAGPREALHRLWDLCRGWLRPERHTKEQILELLVLEQF 90
Query: 478 QAVLPEELR--ARAQRCQPGVRITG*ISLLASCSAYMWE 588
A+LP E++ RAQ + G + + L W+
Sbjct: 91 LAILPREIQGWVRAQEPESGDQAVAAVEALEREPGRPWQ 129
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,798,313
Number of extensions: 1160695
Number of successful extensions: 4778
Number of sequences better than 1.0e-05: 60
Number of HSP's gapped: 4773
Number of HSP's successfully gapped: 60
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007473
(1044 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_361012.2| SCAN domain-containing protein 1 isoform 2 [Hom... 116 4e-26
Alignment gi|NP_057642.1| SCAN domain-containing protein 1 isoform 1 [Hom... 116 4e-26
Alignment gi|NP_005732.2| zinc finger protein 263 [Homo sapiens]. 90 4e-18
Alignment gi|NP_116141.1| zinc finger protein 496 [Homo sapiens]. 89 7e-18
Alignment gi|NP_001007170.1| zinc finger protein 483 isoform b [Homo sapi... 88 1e-17
Alignment gi|NP_597721.2| zinc finger protein 483 isoform a [Homo sapiens]. 88 1e-17
Alignment gi|NP_660090.2| zinc finger protein 498 [Homo sapiens]. 88 1e-17
Alignment gi|NP_001012458.1| zinc finger and SCAN domain-containing prote... 87 3e-17
Alignment gi|NP_932172.1| myeloid zinc finger 1 isoform 2 [Homo sapiens]. 86 6e-17
Alignment gi|NP_003413.2| myeloid zinc finger 1 isoform 1 [Homo sapiens]. 86 6e-17
>ref|NP_361012.2| SCAN domain-containing protein 1 isoform 2 [Homo sapiens].
Length = 242
Score = 116 bits (290), Expect = 4e-26
Identities = 66/122 (54%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Frame = +1
Query: 184 ALPNEMLAEEPEVVL-IAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYE 360
A+P A + L + P V V P++ + E P G L P RQRFR+FRY+
Sbjct: 123 AIPTPRAAASAALELPLGPAPVSVAPQA--EAEARSTPGPAGSRLGPETFRQRFRQFRYQ 180
Query: 361 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRI 540
DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRI
Sbjct: 181 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRI 240
Query: 541 TG 546
TG
Sbjct: 241 TG 242
>ref|NP_057642.1| SCAN domain-containing protein 1 isoform 1 [Homo sapiens].
Length = 179
Score = 116 bits (290), Expect = 4e-26
Identities = 66/122 (54%), Positives = 79/122 (64%), Gaps = 1/122 (0%)
Frame = +1
Query: 184 ALPNEMLAEEPEVVL-IAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYE 360
A+P A + L + P V V P++ + E P G L P RQRFR+FRY+
Sbjct: 60 AIPTPRAAASAALELPLGPAPVSVAPQA--EAEARSTPGPAGSRLGPETFRQRFRQFRYQ 117
Query: 361 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPGVRI 540
DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL A+LPE RAR R + VRI
Sbjct: 118 DAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRIRRRTDVRI 177
Query: 541 TG 546
TG
Sbjct: 178 TG 179
>ref|NP_005732.2| zinc finger protein 263 [Homo sapiens].
Length = 683
Score = 89.7 bits (221), Expect = 4e-18
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +1
Query: 268 KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 447
+DC E P +P AS RFR+FR+++AAGPR+ L +LQEL WLRP++ TKEQ
Sbjct: 20 EDCAWSQELPPPDPGPSPEASHLRFRRFRFQEAAGPREALSRLQELCHGWLRPEMRTKEQ 79
Query: 448 IVEMLVQEQLQAVLPEELRARAQRCQP 528
I+E+LV EQ +LP+E+++R Q P
Sbjct: 80 ILELLVLEQFLTILPQEIQSRVQELHP 106
>ref|NP_116141.1| zinc finger protein 496 [Homo sapiens].
Length = 587
Score = 89.0 bits (219), Expect = 7e-18
Identities = 44/99 (44%), Positives = 66/99 (66%), Gaps = 2/99 (2%)
Frame = +1
Query: 298 PRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQL 477
P+G +P +SR+ FR+FRY++AAGPR+ L++L +L G WLRP+ HTKEQI+E+LV EQ
Sbjct: 31 PQGELPSPESSRRLFRRFRYQEAAGPREALQRLWDLCGGWLRPERHTKEQILELLVLEQF 90
Query: 478 QAVLPEELRA--RAQRCQPGVRITG*ISLLASCSAYMWE 588
A+LP E+++ RAQ + G + + L W+
Sbjct: 91 LAILPREIQSWVRAQEPESGEQAVAAVEALEREPGRPWQ 129
>ref|NP_001007170.1| zinc finger protein 483 isoform b [Homo sapiens].
Length = 256
Score = 88.2 bits (217), Expect = 1e-17
Identities = 49/104 (47%), Positives = 60/104 (57%)
Frame = +1
Query: 193 NEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAG 372
N+M A PE +A + P E+ E + RG + RQRFR F Y + AG
Sbjct: 8 NKMTAISPEPQTLASTEQNEVPRVVTSGEQ--EAILRGNAADAESFRQRFRWFCYSEVAG 65
Query: 373 PRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR 504
PR L QL EL QWLRPDIHTKEQI+E+LV EQ +LP E+R
Sbjct: 66 PRKALSQLWELCNQWLRPDIHTKEQILELLVFEQFLTILPGEIR 109
>ref|NP_597721.2| zinc finger protein 483 isoform a [Homo sapiens].
Length = 744
Score = 88.2 bits (217), Expect = 1e-17
Identities = 49/104 (47%), Positives = 60/104 (57%)
Frame = +1
Query: 193 NEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAG 372
N+M A PE +A + P E+ E + RG + RQRFR F Y + AG
Sbjct: 8 NKMTAISPEPQTLASTEQNEVPRVVTSGEQ--EAILRGNAADAESFRQRFRWFCYSEVAG 65
Query: 373 PRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR 504
PR L QL EL QWLRPDIHTKEQI+E+LV EQ +LP E+R
Sbjct: 66 PRKALSQLWELCNQWLRPDIHTKEQILELLVFEQFLTILPGEIR 109
>ref|NP_660090.2| zinc finger protein 498 [Homo sapiens].
Length = 544
Score = 87.8 bits (216), Expect = 1e-17
Identities = 47/106 (44%), Positives = 66/106 (62%), Gaps = 3/106 (2%)
Frame = +1
Query: 199 MLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPL---TPAASRQRFRKFRYEDAA 369
ML E PE+ Q+ +P + + +P GR +P R RFR+FRY++AA
Sbjct: 1 MLKEHPEMAEAPQQQLGIPVVKLE------KELPWGRGREDPSPETFRLRFRQFRYQEAA 54
Query: 370 GPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRA 507
GP++ LR+LQEL +WLRP++HTKEQI+E+LV EQ +LP E A
Sbjct: 55 GPQEALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPREFYA 100
>ref|NP_001012458.1| zinc finger and SCAN domain-containing protein 23 [Homo sapiens].
Length = 389
Score = 86.7 bits (213), Expect = 3e-17
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = +1
Query: 301 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 480
R P T R+RFR+F Y+++ GPR+ L++LQEL QWLRP++HTKEQI+E+LV EQ
Sbjct: 38 RNNPHTREIFRRRFRQFCYQESPGPREALQRLQELCHQWLRPEMHTKEQILELLVLEQFL 97
Query: 481 AVLPEELRARAQRCQP 528
+LPEEL+A ++ +P
Sbjct: 98 TILPEELQAWVRQHRP 113
>ref|NP_932172.1| myeloid zinc finger 1 isoform 2 [Homo sapiens].
Length = 734
Score = 85.9 bits (211), Expect = 6e-17
Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +1
Query: 232 APPQVQVPPE-SFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELA 408
APP+ + P +D EE+ E P A+R RFR FRYE+A GP++ L QL+EL
Sbjct: 12 APPEDEGPVMVKLEDSEEEGEAALWDPG--PEAARLRFRCFRYEEATGPQEALAQLRELC 69
Query: 409 GQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 531
QWLRP++ +KEQ++E+LV EQ LP E++AR Q +PG
Sbjct: 70 RQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPG 110
>ref|NP_003413.2| myeloid zinc finger 1 isoform 1 [Homo sapiens].
Length = 734
Score = 85.9 bits (211), Expect = 6e-17
Identities = 47/101 (46%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Frame = +1
Query: 232 APPQVQVPPE-SFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELA 408
APP+ + P +D EE+ E P A+R RFR FRYE+A GP++ L QL+EL
Sbjct: 12 APPEDEGPVMVKLEDSEEEGEAALWDPG--PEAARLRFRCFRYEEATGPQEALAQLRELC 69
Query: 409 GQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 531
QWLRP++ +KEQ++E+LV EQ LP E++AR Q +PG
Sbjct: 70 RQWLRPEVRSKEQMLELLVLEQFLGALPPEIQARVQGQRPG 110
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,074,984
Number of extensions: 1143800
Number of successful extensions: 4618
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 4609
Number of HSP's successfully gapped: 81
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007473
(1044 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_064651.2| paroxisome proliferative activated receptor, ga... 111 8e-25
Alignment gi|NP_683726.2| zinc finger protein 263 [Mus musculus]. 92 9e-19
Alignment gi|NP_001034204.1| zinc finger protein with KRAB and SCAN domai... 89 6e-18
Alignment gi|NP_001074900.1| zinc finger protein 498 [Mus musculus]. 87 2e-17
Alignment gi|NP_001038170.1| zinc finger and SCAN domain-containing prote... 87 2e-17
Alignment gi|NP_001038169.1| zinc finger and SCAN domain-containing prote... 87 2e-17
Alignment gi|NP_001038168.1| zinc finger and SCAN domain-containing prote... 87 2e-17
Alignment gi|NP_035887.2| zinc finger and SCAN domain-containing protein ... 87 2e-17
Alignment gi|NP_001139250.1| zinc finger protein with KRAB and SCAN domai... 86 4e-17
Alignment gi|NP_076174.3| zinc finger protein with KRAB and SCAN domains ... 86 4e-17
>ref|NP_064651.2| paroxisome proliferative activated receptor, gamma, coactivator 1
[Mus musculus].
Length = 142
Score = 111 bits (278), Expect = 8e-25
Identities = 67/135 (49%), Positives = 77/135 (57%), Gaps = 8/135 (5%)
Frame = +1
Query: 166 QNDDVSALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRG-RPLTPAASR--- 333
Q+ A P E + +P P L T P L P ASR
Sbjct: 8 QDPQSPAAPPEQQEGAGDCAAPSPDSGSSPAPELPGAPAALNTAPYADAALRPGASRPGP 67
Query: 334 ----QRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 501
QRFR+FRY+DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQLQA+LPE
Sbjct: 68 ETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQLQAILPEAA 127
Query: 502 RARAQRCQPGVRITG 546
RAR R + VRITG
Sbjct: 128 RARRLRRRADVRITG 142
>ref|NP_683726.2| zinc finger protein 263 [Mus musculus].
Length = 680
Score = 91.7 bits (226), Expect = 9e-19
Identities = 47/108 (43%), Positives = 68/108 (62%)
Frame = +1
Query: 205 AEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDV 384
++EPE +LI + +DC E P +P AS RFR+FR++DA GPR+
Sbjct: 9 SQEPEGLLIVKLE--------EDCAWSHEVPPPEPEPSPEASHLRFRRFRFQDAPGPREA 60
Query: 385 LRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
L +LQEL WLRP++ TKEQI+E+LV EQ +LP+E+++R Q +P
Sbjct: 61 LSRLQELCRGWLRPEMRTKEQILELLVLEQFLTILPQEIQSRVQELRP 108
>ref|NP_001034204.1| zinc finger protein with KRAB and SCAN domains 4 [Mus musculus].
Length = 480
Score = 89.0 bits (219), Expect = 6e-18
Identities = 64/154 (41%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Frame = +1
Query: 181 SALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYE 360
SA N AEE +L+ V+V E E ET G P P SRQRFR FRY
Sbjct: 8 SAALNARSAEEGTGLLV----VKVEQEEASPLAE--ETSWLGSP-GPDRSRQRFRAFRYP 60
Query: 361 DAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELR--ARAQRCQPGV 534
+AAGPR L +L+EL QWLRPD+H+KEQI+E+LV EQ +LP EL+ R Q G
Sbjct: 61 EAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQTWVREQHPDSGE 120
Query: 535 RITG*ISLL------ASCSAYMWEVSKGSLCCKI 618
+ + L E S+ LCCK+
Sbjct: 121 EVVALLEYLDRQLDDTPPQVSTGEWSRELLCCKV 154
>ref|NP_001074900.1| zinc finger protein 498 [Mus musculus].
Length = 543
Score = 87.4 bits (215), Expect = 2e-17
Identities = 48/100 (48%), Positives = 65/100 (65%)
Frame = +1
Query: 199 MLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPR 378
ML E E+ PQ Q+ K E++L G +P A R RFR+FRY++AAGP+
Sbjct: 1 MLKERLEMA--GDPQQQMGAPVVK-LEKELPWGRGGEDSSPEAFRLRFRQFRYQEAAGPQ 57
Query: 379 DVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEE 498
+ LR+LQEL +WLRP++HTKEQI+E+LV EQ +LP E
Sbjct: 58 EALRELQELCRRWLRPELHTKEQILELLVLEQFLTILPRE 97
>ref|NP_001038170.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.0 bits (214), Expect = 2e-17
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 16/129 (12%)
Frame = +1
Query: 190 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------CEEDLETVPRGRPLTP 321
P+ + AEE E P +++ +SFK EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 322 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 501
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 502 RARAQRCQP 528
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_001038169.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.0 bits (214), Expect = 2e-17
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 16/129 (12%)
Frame = +1
Query: 190 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------CEEDLETVPRGRPLTP 321
P+ + AEE E P +++ +SFK EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 322 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 501
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 502 RARAQRCQP 528
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_001038168.1| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.0 bits (214), Expect = 2e-17
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 16/129 (12%)
Frame = +1
Query: 190 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------CEEDLETVPRGRPLTP 321
P+ + AEE E P +++ +SFK EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 322 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 501
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 502 RARAQRCQP 528
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_035887.2| zinc finger and SCAN domain-containing protein 21 [Mus musculus].
Length = 555
Score = 87.0 bits (214), Expect = 2e-17
Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 16/129 (12%)
Frame = +1
Query: 190 PNEMLAEEPEVVLIAPPQVQVPPESFKD----------------CEEDLETVPRGRPLTP 321
P+ + AEE E P +++ +SFK EED E +G P +P
Sbjct: 61 PSTIKAEEDESKDKCRPNLEISRKSFKQFGYQDTLEQLGPSTIKAEEDDEK-DKGHP-SP 118
Query: 322 AASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEEL 501
SRQRFR+F Y D GPR+ L QL+ L +WL+P+IHTKEQI+E+LV EQ +LP EL
Sbjct: 119 EISRQRFRQFGYHDTPGPREALSQLRVLCCEWLQPEIHTKEQILELLVLEQFLTILPREL 178
Query: 502 RARAQRCQP 528
+ Q+ P
Sbjct: 179 QTWVQQHCP 187
>ref|NP_001139250.1| zinc finger protein with KRAB and SCAN domains 3 [Mus musculus].
Length = 553
Score = 86.3 bits (212), Expect = 4e-17
Identities = 50/121 (41%), Positives = 72/121 (59%)
Frame = +1
Query: 166 QNDDVSALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFR 345
++ + + L + ++ E+++I Q + P + ET G P P SRQRFR
Sbjct: 4 ESRESTTLDSHSAEDQMELLVIKVEQEEASPLAE-------ETSWLGSP-GPDRSRQRFR 55
Query: 346 KFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQ 525
FRY +AAGPR L +L+EL QWLRPD+H+KEQI+E+LV EQ +LP EL+A +
Sbjct: 56 AFRYPEAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQH 115
Query: 526 P 528
P
Sbjct: 116 P 116
>ref|NP_076174.3| zinc finger protein with KRAB and SCAN domains 3 [Mus musculus].
Length = 553
Score = 86.3 bits (212), Expect = 4e-17
Identities = 50/121 (41%), Positives = 72/121 (59%)
Frame = +1
Query: 166 QNDDVSALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFR 345
++ + + L + ++ E+++I Q + P + ET G P P SRQRFR
Sbjct: 4 ESRESTTLDSHSAEDQMELLVIKVEQEEASPLAE-------ETSWLGSP-GPDRSRQRFR 55
Query: 346 KFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQ 525
FRY +AAGPR L +L+EL QWLRPD+H+KEQI+E+LV EQ +LP EL+A +
Sbjct: 56 AFRYPEAAGPRQALSRLRELCRQWLRPDMHSKEQILELLVLEQFLTILPGELQAWVREQH 115
Query: 526 P 528
P
Sbjct: 116 P 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,691,028
Number of extensions: 946220
Number of successful extensions: 3732
Number of sequences better than 1.0e-05: 45
Number of HSP's gapped: 3717
Number of HSP's successfully gapped: 45
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007473
(1044 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230507.1| SCAN domain-containing 1-like [Sus scrofa]. 283 1e-76
Alignment gi|XP_003134467.1| PREDICTED: SCAN domain-containing protein 1-... 109 2e-24
Alignment gi|XP_003124723.1| PREDICTED: zinc finger protein 263 [Sus scro... 89 5e-18
Alignment gi|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-conta... 88 9e-18
Alignment gi|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-... 84 1e-16
Alignment gi|XP_003356633.1| PREDICTED: zinc finger and SCAN domain-conta... 84 1e-16
Alignment gi|XP_003127824.1| PREDICTED: zinc finger and SCAN domain-conta... 84 1e-16
Alignment gi|NP_001230304.1| zinc finger protein 24 [Sus scrofa]. 84 1e-16
Alignment gi|XP_003135457.2| PREDICTED: zinc finger protein 75D [Sus scro... 84 2e-16
Alignment gi|XP_003132046.1| PREDICTED: zinc finger protein 18 [Sus scrof... 84 2e-16
>ref|NP_001230507.1| SCAN domain-containing 1-like [Sus scrofa].
Length = 142
Score = 283 bits (724), Expect = 1e-76
Identities = 140/142 (98%), Positives = 141/142 (99%)
Frame = +1
Query: 121 MEMEGDPEMQRNGEIQNDDVSALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVP 300
MEMEGDPEMQRNGEIQNDD+SALPNEMLAEEPEVVLIAPPQVQVPPESFKD EEDLETVP
Sbjct: 1 MEMEGDPEMQRNGEIQNDDISALPNEMLAEEPEVVLIAPPQVQVPPESFKDSEEDLETVP 60
Query: 301 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 480
RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ
Sbjct: 61 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 120
Query: 481 AVLPEELRARAQRCQPGVRITG 546
AVLPEELRARAQRCQPGVRITG
Sbjct: 121 AVLPEELRARAQRCQPGVRITG 142
>ref|XP_003134467.1| PREDICTED: SCAN domain-containing protein 1-like [Sus scrofa].
Length = 179
Score = 109 bits (273), Expect = 2e-24
Identities = 56/83 (67%), Positives = 63/83 (75%)
Frame = +1
Query: 298 PRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQL 477
P G P RQRFR+FRY+DAAGPR+ RQL+EL+ QWLRPDI TKEQIVEMLVQEQL
Sbjct: 97 PGGSRPGPETFRQRFRQFRYQDAAGPREAFRQLRELSRQWLRPDIRTKEQIVEMLVQEQL 156
Query: 478 QAVLPEELRARAQRCQPGVRITG 546
A+LPE RAR R + VRITG
Sbjct: 157 LAILPEAARARRLRRRTDVRITG 179
>ref|XP_003124723.1| PREDICTED: zinc finger protein 263 [Sus scrofa].
Length = 684
Score = 88.6 bits (218), Expect = 5e-18
Identities = 41/87 (47%), Positives = 59/87 (67%)
Frame = +1
Query: 268 KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 447
+DC E P +P AS RFR+FR+++A+GPR+ L +LQEL WLRP++ TKEQ
Sbjct: 20 EDCAWSQELPPPDPRPSPEASHLRFRRFRFQEASGPREALSRLQELCHGWLRPEMRTKEQ 79
Query: 448 IVEMLVQEQLQAVLPEELRARAQRCQP 528
I+E+LV EQ +LP+E+++R Q P
Sbjct: 80 ILELLVLEQFLTILPQEIQSRVQELHP 106
>ref|XP_003128280.2| PREDICTED: zinc finger and SCAN domain-containing protein 23-like
isoform 1 [Sus scrofa].
Length = 389
Score = 87.8 bits (216), Expect = 9e-18
Identities = 41/77 (53%), Positives = 56/77 (72%)
Frame = +1
Query: 301 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 480
R P T R+RFR+F Y++ GPR+ LR+LQEL QWLRP++H+KEQI+E+LV EQ
Sbjct: 38 RDNPHTREIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHSKEQILELLVLEQFL 97
Query: 481 AVLPEELRARAQRCQPG 531
+LPEEL+A + +PG
Sbjct: 98 TILPEELQAWVREHRPG 114
>ref|XP_003128285.1| PREDICTED: SCAN domain-containing protein 3-like [Sus scrofa].
Length = 1323
Score = 84.3 bits (207), Expect = 1e-16
Identities = 49/117 (41%), Positives = 70/117 (59%)
Frame = +1
Query: 178 VSALPNEMLAEEPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRY 357
+SAL + E+ E++ +V+V E +E + + T SRQRFR+ Y
Sbjct: 8 LSALAGQASEEQGEII-----KVKVKEEDHIWDQESC--IQKNLSHTRELSRQRFRQLCY 60
Query: 358 EDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
++ GPR+ L QL+EL QWL P+IHTKEQI+E+LV EQL +LPEEL+A + P
Sbjct: 61 QETPGPREALSQLRELCRQWLSPEIHTKEQILELLVLEQLLTILPEELQAWVREHHP 117
>ref|XP_003356633.1| PREDICTED: zinc finger and SCAN domain-containing protein 23-like
isoform 2 [Sus scrofa].
Length = 360
Score = 84.3 bits (207), Expect = 1e-16
Identities = 39/69 (56%), Positives = 52/69 (75%)
Frame = +1
Query: 301 RGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQ 480
R P T R+RFR+F Y++ GPR+ LR+LQEL QWLRP++H+KEQI+E+LV EQ
Sbjct: 38 RDNPHTREIFRRRFRQFCYQETPGPREALRRLQELCHQWLRPEMHSKEQILELLVLEQFL 97
Query: 481 AVLPEELRA 507
+LPEEL+A
Sbjct: 98 TILPEELQA 106
>ref|XP_003127824.1| PREDICTED: zinc finger and SCAN domain-containing protein 20 [Sus
scrofa].
Length = 1045
Score = 84.3 bits (207), Expect = 1e-16
Identities = 48/106 (45%), Positives = 61/106 (57%)
Frame = +1
Query: 211 EPEVVLIAPPQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLR 390
EPE +LI + + E+DL VP P ASRQRFR+F+Y DAAGP +
Sbjct: 16 EPEELLIVKLEEDSWRPDSQPQEKDLNPVPG-----PEASRQRFRQFQYRDAAGPHEAFS 70
Query: 391 QLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
QL L WLRP+I KEQI+E+LV EQ +LP E++A Q P
Sbjct: 71 QLWALCCHWLRPEIRLKEQILELLVLEQFLTILPREVQAWVQARHP 116
>ref|NP_001230304.1| zinc finger protein 24 [Sus scrofa].
Length = 368
Score = 84.3 bits (207), Expect = 1e-16
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 5/112 (4%)
Frame = +1
Query: 208 EEPEVVLIAPPQ-----VQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAG 372
EE +++I P ++V E D EE ++P P RQRFR+F Y+D+ G
Sbjct: 7 EEDSILIIPTPDEEEKILRVKLEEDPDGEEG-SSIPWNHLPDPEVFRQRFRQFGYQDSPG 65
Query: 373 PRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQP 528
PR+ + QL+EL WLRP+ HTKEQI+E++V EQ A+LP+EL+ + P
Sbjct: 66 PREAVSQLRELCRLWLRPETHTKEQILELVVLEQFVAILPKELQTWVREHHP 117
>ref|XP_003135457.2| PREDICTED: zinc finger protein 75D [Sus scrofa].
Length = 525
Score = 83.6 bits (205), Expect = 2e-16
Identities = 38/87 (43%), Positives = 56/87 (64%)
Frame = +1
Query: 268 KDCEEDLETVPRGRPLTPAASRQRFRKFRYEDAAGPRDVLRQLQELAGQWLRPDIHTKEQ 447
+ C + ++ P+ L P ++RQ FR F Y +A GP + + QLQEL QWLRP+IH+KEQ
Sbjct: 40 ESCSQSKQSSPQMDSLGPESARQHFRSFYYHEAPGPLEAVSQLQELCHQWLRPEIHSKEQ 99
Query: 448 IVEMLVQEQLQAVLPEELRARAQRCQP 528
I+E+LV EQ +LP + + Q+ P
Sbjct: 100 ILELLVLEQFLTILPRDTQNWVQKYHP 126
>ref|XP_003132046.1| PREDICTED: zinc finger protein 18 [Sus scrofa].
Length = 551
Score = 83.6 bits (205), Expect = 2e-16
Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Frame = +1
Query: 187 LPNEMLAEEPEVVLIAP-PQVQVPPESFKDCEEDLETVPRGRPLTPAASRQRFRKFRYED 363
+P++++ EP L+ P P + F + P G P +P + Q FR+F Y+
Sbjct: 3 VPSQVMPMEPGQALVLPLPLAKAEESPFPGPD----AAPPGEPSSPETACQLFRQFPYQV 58
Query: 364 AAGPRDVLRQLQELAGQWLRPDIHTKEQIVEMLVQEQLQAVLPEELRARAQRCQPG 531
+GP + LRQL++L QWL+P++HTKEQI+EML+ EQ +LP E++ ++ PG
Sbjct: 59 MSGPHETLRQLRKLCFQWLQPELHTKEQILEMLLLEQFLTILPGEIQMWVRKQCPG 114
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,132,044
Number of extensions: 760940
Number of successful extensions: 3073
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 43
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007473
(1044 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 1413 0.0
Sscrofa_Chr07 100 3e-18
gb|GL892350.2| Sus scrofa unplaced genomic scaffold ChrUScaf237 84 2e-13
Sscrofa_Chr17 84 2e-13
Sscrofa_Chr04 68 1e-08
>Sscrofa_Chr06
|| Length = 157765593
Score = 1413 bits (713), Expect = 0.0
Identities = 731/737 (99%)
Strand = Plus / Plus
Query: 87 aggagtctgagaaatcctcttccagagttctagaatggagatggaaggggacccagagat 146
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 74038752 aggagtctgagaaatcctcttctagagttctagaatggagatggaaggggacccagagat 74038811
Query: 147 gcaaagaaatggggaaatccagaatgatgacgtaagtgcactaccaaatgagatgttggc 206
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 74038812 gcaaagaaatggggaaatccagaatgatgacataagtgcactaccaaatgagatgttggc 74038871
Query: 207 tgaggagccagaggtggtcctgatagcacctccccaggtccaggtgccaccagagagctt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038872 tgaggagccagaggtggtcctgatagcacctccccaggtccaggtgccaccagagagctt 74038931
Query: 267 caaagactgtgaagaagacctggagaccgtgccccgagggagacctctcacccctgcagc 326
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038932 caaagactctgaagaagacctggagaccgtgccccgagggagacctctcacccctgcagc 74038991
Query: 327 ctccaggcagagattccggaagttccgctacgaggatgcggctgggcccagggatgtcct 386
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74038992 ctccaggcagagattcaggaagttccgctacgaggatgcggctgggcccagggatgtcct 74039051
Query: 387 cagacaactccaggagcttgctggacagtggctgaggcccgacattcacacaaaggagca 446
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 74039052 cagacaactccaggagcttgccggacagtggctgaggcccgacattcacacaaaggagca 74039111
Query: 447 gattgtggaaatgctggtgcaggagcaactccaggctgtcctccctgaggagctcagagc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039112 gattgtggaaatgctggtgcaggagcaactccaggctgtcctccctgaggagctcagagc 74039171
Query: 507 cagggcacagagatgtcagcctggggtcagaatcactggctgaatctcgctgcttgcttc 566
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 74039172 cagggcacagagatgtcagcctggggtcagaatcactggctgaatctccctgcttgcttc 74039231
Query: 567 ttgctcagcctacatgtgggaagtaagcaaaggctctctctgttgcaagatcgagctgca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039232 ttgctcagcctacatgtgggaagtaagcaaaggctctctctgttgcaagatcgagctgca 74039291
Query: 627 ggcgtgggaaatctgaacctcagttttcttcgagcttgcctttgactagctgtaggaaga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039292 ggcgtgggaaatctgaacctcagttttcttcgagcttgcctttgactagctgtaggaaga 74039351
Query: 687 atcagaacccatgcctggacccttttctggctgcagcagctctatttcctgggactgtga 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039352 atcagaacccatgcctggacccttttctggctgcagcagctctatttcctgggactgtga 74039411
Query: 747 actccagaatgagtttccctgccctcttgttaggacaatcagcctgctgcttcgtttttg 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039412 actccagaatgagtttccctgccctcttgttaggacaatcagcctgctgcttcgtttttg 74039471
Query: 807 ctctgctaagatgcccc 823
|||||||||||||||||
Sbjct: 74039472 ctctgctaagatgcccc 74039488
Score = 200 bits (101), Expect = 1e-48
Identities = 138/144 (95%), Gaps = 6/144 (4%)
Strand = Plus / Plus
Query: 881 aatgtacccaaagaggtgattgcctcagctttaatattcttgattcttgctgtggtggca 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74039547 aatgtacccaaagaggtgattgcctcagctttaatattcttgattcttgctgtggtggca 74039606
Query: 941 tgaatgggaagcttctgtaaccccaccagtaactcattttgggatgtcccttgaaataat 1000
||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct: 74039607 tgaat-ggaagcttctgtaaccccaccagtaactca-tttgggatgt-ccttgaaat-at 74039662
Query: 1001 taaaaggttcggggtttttttttt 1024
|||| ||||||||||||||||||
Sbjct: 74039663 taaa--gttcggggtttttttttt 74039684
Score = 165 bits (83), Expect = 6e-38
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 3 tttccttttcctggacccggtggagggccctctagtttcatcgcgagccgcccggtcccc 62
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74034485 tttccttttcccggacccggtggagggccctctagtttcatcgcgagccgcccggtcccc 74034544
Query: 63 ccgccctctgaggggcacctgcgcagg 89
|||||||||||||||||||||||||||
Sbjct: 74034545 ccgccctctgaggggcacctgcgcagg 74034571
>Sscrofa_Chr07
|| Length = 134764511
Score = 99.6 bits (50), Expect = 3e-18
Identities = 97/110 (88%), Gaps = 2/110 (1%)
Strand = Plus / Plus
Query: 882 atgtacccaaagaggtgattgcctcagctttaatattcttgattcttgctgtggtggcat 941
||||| ||| ||| |||| ||| ||| ||||||||||||||| |||||||||||||| ||
Sbjct: 20356279 atgtatccatagaagtgactgcttcaactttaatattcttgactcttgctgtggtggaat 20356338
Query: 942 gaatgggaagcttctgtaaccccaccagtaactcattttgggatgtccct 991
|||| ||||||||||||||||| || |||||||| ||||||||||||||
Sbjct: 20356339 gaat-ggaagcttctgtaaccctactggtaactca-tttgggatgtccct 20356386
Score = 69.9 bits (35), Expect = 3e-09
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 748 ctccagaatgagtttccctgccctcttgttaggacaatcagcctgctgctt 798
||||||||||||||||||| ||||||| ||| ||||||||||||| |||||
Sbjct: 20356165 ctccagaatgagtttccctaccctcttattaagacaatcagcctgatgctt 20356215
>gb|GL892350.2| Sus scrofa unplaced genomic scaffold ChrUScaf237
Length = 53720
Score = 83.8 bits (42), Expect = 2e-13
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 760 tttccctgccctcttgttaggacaatcagcctgctgcttcgtttttgctctgct 813
||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 15607 tttccctgccctcttgttaggacaatcagcctgctgctt-gtttttgccctgct 15555
>Sscrofa_Chr17
|| Length = 69701581
Score = 83.8 bits (42), Expect = 2e-13
Identities = 52/54 (96%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 760 tttccctgccctcttgttaggacaatcagcctgctgcttcgtttttgctctgct 813
||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 31572831 tttccctgccctcttgttaggacaatcagcctgctgctt-gtttttgccctgct 31572779
Score = 67.9 bits (34), Expect = 1e-08
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 412 cagtggctgaggcccgacattcacacaaaggagcagattgtggaaatgctggtgcaggag 471
||||||||| |||||||||| | ||| ||||||||||| ||||| ||||||||||| |||
Sbjct: 44651141 cagtggctgcggcccgacatccgcacgaaggagcagatcgtggagatgctggtgcaagag 44651082
Query: 472 ca 473
||
Sbjct: 44651081 ca 44651080
>Sscrofa_Chr04
|| Length = 143465943
Score = 67.9 bits (34), Expect = 1e-08
Identities = 117/143 (81%), Gaps = 5/143 (3%)
Strand = Plus / Plus
Query: 615 gatcgagctgcaggcgtgggaaatctgaacctcagttttcttcgagcttgcctttgacta 674
|||| |||||||| | |||||| | ||||||||||||| ||| |||||||||||||||||
Sbjct: 77456813 gatccagctgcagccatgggaact-tgaacctcagtttcctttgagcttgcctttgacta 77456871
Query: 675 gctgtaggaagaatcagaacccatgcctggacc----cttttctggctgcagcagctcta 730
| |||| | |||||| ||||| |||| ||||| |||| |||| || |||||
Sbjct: 77456872 gttgtaataggaatcaaaacccgtgcccggacctctttttttttggccaaggcggctctc 77456931
Query: 731 tttcctgggactgtgaactccag 753
|||||||||||||||||||||||
Sbjct: 77456932 tttcctgggactgtgaactccag 77456954
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,721,385
Number of extensions: 363
Number of successful extensions: 363
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 9
Length of query: 1044
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1023
Effective length of database: 2,808,413,156
Effective search space: 2873006658588
Effective search space used: 2873006658588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)