Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007475
(1578 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069722.1| eukaryotic peptide chain release factor subu... 824 0.0
>ref|NP_001069722.1| eukaryotic peptide chain release factor subunit 1 [Bos taurus].
Length = 437
Score = 824 bits (2128), Expect = 0.0
Identities = 419/425 (98%), Positives = 419/425 (98%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 360
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 361 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 421 GMEYQ 425
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,028,680
Number of extensions: 1374166
Number of successful extensions: 4084
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4079
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 419
Effective length of database: 14,140,958
Effective search space: 5925061402
Effective search space used: 5925061402
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007475
(1578 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531922.2| PREDICTED: similar to eukaryotic translation te... 824 0.0
Alignment gi|XP_851272.1| PREDICTED: similar to eukaryotic translation te... 824 0.0
Alignment gi|XP_863497.1| PREDICTED: similar to eukaryotic translation te... 773 0.0
Alignment gi|XP_863456.1| PREDICTED: similar to eukaryotic translation te... 760 0.0
Alignment gi|XP_863429.1| PREDICTED: similar to eukaryotic translation te... 760 0.0
Alignment gi|XP_859950.1| PREDICTED: similar to eukaryotic translation te... 723 0.0
Alignment gi|XP_863478.1| PREDICTED: similar to eukaryotic translation te... 723 0.0
>ref|XP_531922.2| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 1 [Canis familiaris].
Length = 437
Score = 824 bits (2128), Expect = 0.0
Identities = 419/425 (98%), Positives = 419/425 (98%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 360
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 361 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 421 GMEYQ 425
>ref|XP_851272.1| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 1 [Canis familiaris].
Length = 437
Score = 824 bits (2128), Expect = 0.0
Identities = 419/425 (98%), Positives = 419/425 (98%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 360
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 361 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 421 GMEYQ 425
>ref|XP_863497.1| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 5 [Canis familiaris].
Length = 435
Score = 773 bits (1995), Expect = 0.0
Identities = 400/425 (94%), Positives = 401/425 (94%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTE LY P +
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEACFSLY--PGSSPTSGSRCME 358
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
TGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 359 PTGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 418
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 419 GMEYQ 423
>ref|XP_863456.1| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 3 [Canis familiaris].
Length = 404
Score = 760 bits (1962), Expect = 0.0
Identities = 386/392 (98%), Positives = 386/392 (98%)
Frame = +3
Query: 258 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL 437
MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL
Sbjct: 1 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL 60
Query: 438 VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG 617
VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG
Sbjct: 61 VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG 120
Query: 618 SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF 797
SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF
Sbjct: 121 SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF 180
Query: 798 ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE 977
ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE
Sbjct: 181 ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE 240
Query: 978 VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL 1157
VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL
Sbjct: 241 VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL 300
Query: 1158 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT 1337
HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT
Sbjct: 301 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT 360
Query: 1338 DKSQEGIPFVKGFGGIGGILRYRVDSXGNGYQ 1433
DKSQEG FVKGFGGIGGILRYRVD G YQ
Sbjct: 361 DKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQ 392
>ref|XP_863429.1| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 2 [Canis familiaris].
Length = 404
Score = 760 bits (1962), Expect = 0.0
Identities = 386/392 (98%), Positives = 386/392 (98%)
Frame = +3
Query: 258 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL 437
MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL
Sbjct: 1 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL 60
Query: 438 VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG 617
VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG
Sbjct: 61 VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG 120
Query: 618 SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF 797
SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF
Sbjct: 121 SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF 180
Query: 798 ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE 977
ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE
Sbjct: 181 ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE 240
Query: 978 VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL 1157
VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL
Sbjct: 241 VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL 300
Query: 1158 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT 1337
HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT
Sbjct: 301 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT 360
Query: 1338 DKSQEGIPFVKGFGGIGGILRYRVDSXGNGYQ 1433
DKSQEG FVKGFGGIGGILRYRVD G YQ
Sbjct: 361 DKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQ 392
>ref|XP_859950.1| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 3 [Canis familiaris].
Length = 398
Score = 723 bits (1866), Expect = 0.0
Identities = 380/425 (89%), Positives = 380/425 (89%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLD
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLD--------------------------------- 327
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 328 ------ELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 381
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 382 GMEYQ 386
>ref|XP_863478.1| PREDICTED: similar to eukaryotic translation termination factor 1
(predicted) isoform 4 [Canis familiaris].
Length = 398
Score = 723 bits (1866), Expect = 0.0
Identities = 380/425 (89%), Positives = 380/425 (89%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLD
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLD--------------------------------- 327
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 328 ------ELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 381
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 382 GMEYQ 386
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,467,811
Number of extensions: 1422840
Number of successful extensions: 4419
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4410
Number of HSP's successfully gapped: 11
Length of query: 526
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 419
Effective length of database: 15,307,552
Effective search space: 6413864288
Effective search space used: 6413864288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007475
(1578 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004721.1| eukaryotic peptide chain release factor subunit... 824 0.0
>ref|NP_004721.1| eukaryotic peptide chain release factor subunit 1 [Homo sapiens].
Length = 437
Score = 824 bits (2128), Expect = 0.0
Identities = 419/425 (98%), Positives = 419/425 (98%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 360
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 361 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 421 GMEYQ 425
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,514,897
Number of extensions: 1404156
Number of successful extensions: 4319
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4297
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 419
Effective length of database: 14,770,016
Effective search space: 6188636704
Effective search space used: 6188636704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007475
(1578 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_659115.3| eukaryotic peptide chain release factor subunit... 824 0.0
Alignment gi|XP_003084556.1| PREDICTED: hypothetical protein LOC100038551... 39 4e-06
Alignment gi|XP_003086296.1| PREDICTED: hypothetical protein LOC100038551... 39 4e-06
>ref|NP_659115.3| eukaryotic peptide chain release factor subunit 1 [Mus musculus].
Length = 437
Score = 824 bits (2128), Expect = 0.0
Identities = 419/425 (98%), Positives = 419/425 (98%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 360
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 361 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 421 GMEYQ 425
>ref|XP_003084556.1| PREDICTED: hypothetical protein LOC100038551 [Mus musculus].
Length = 103
Score = 38.5 bits (88), Expect(2) = 4e-06
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 477 EKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGAL-FGTLQGNT 653
+KK +DFEPFKP++TSL + D + EA LS +++ V+ GS L +
Sbjct: 28 KKKARVDFEPFKPMSTSLRVADAR---EAHVTQLSGTARW-LCVVGGSAVLCHNPRKHKA 83
Query: 654 REVLHKFTVDL 686
+ LH+F+ L
Sbjct: 84 SQALHEFSDSL 94
Score = 31.6 bits (70), Expect(2) = 4e-06
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 431 WPGCLLWYNCNRRRKGKESQ 490
WPGCL W NC++ R K+++
Sbjct: 13 WPGCLPWNNCSKGRNKKKAR 32
>ref|XP_003086296.1| PREDICTED: hypothetical protein LOC100038551 [Mus musculus].
Length = 103
Score = 38.5 bits (88), Expect(2) = 4e-06
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +3
Query: 477 EKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGAL-FGTLQGNT 653
+KK +DFEPFKP++TSL + D + EA LS +++ V+ GS L +
Sbjct: 28 KKKARVDFEPFKPMSTSLRVADAR---EAHVTQLSGTARW-LCVVGGSAVLCHNPRKHKA 83
Query: 654 REVLHKFTVDL 686
+ LH+F+ L
Sbjct: 84 SQALHEFSDSL 94
Score = 31.6 bits (70), Expect(2) = 4e-06
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 431 WPGCLLWYNCNRRRKGKESQ 490
WPGCL W NC++ R K+++
Sbjct: 13 WPGCLPWNNCSKGRNKKKAR 32
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,245,455
Number of extensions: 1193909
Number of successful extensions: 3573
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3563
Number of HSP's successfully gapped: 5
Length of query: 526
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 420
Effective length of database: 12,433,743
Effective search space: 5222172060
Effective search space used: 5222172060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007475
(1578 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003124023.1| PREDICTED: eukaryotic peptide chain release ... 824 0.0
Alignment gi|XP_003124005.2| PREDICTED: eukaryotic peptide chain release ... 562 e-160
>ref|XP_003124023.1| PREDICTED: eukaryotic peptide chain release factor subunit 1-like
[Sus scrofa].
Length = 437
Score = 824 bits (2128), Expect = 0.0
Identities = 419/425 (98%), Positives = 419/425 (98%)
Frame = +3
Query: 159 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 338
MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS
Sbjct: 1 MADDPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTAS 60
Query: 339 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 518
NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI
Sbjct: 61 NIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPI 120
Query: 519 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 698
NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH
Sbjct: 121 NTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKH 180
Query: 699 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 878
GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD
Sbjct: 181 GRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSD 240
Query: 879 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 1058
MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK
Sbjct: 241 MFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGK 300
Query: 1059 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 1238
YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK
Sbjct: 301 YCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDK 360
Query: 1239 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSX 1418
ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD
Sbjct: 361 ETGQEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQ 420
Query: 1419 GNGYQ 1433
G YQ
Sbjct: 421 GMEYQ 425
>ref|XP_003124005.2| PREDICTED: eukaryotic peptide chain release factor subunit 1-like
[Sus scrofa].
Length = 364
Score = 562 bits (1448), Expect(2) = e-160
Identities = 285/292 (97%), Positives = 286/292 (97%)
Frame = +3
Query: 558 EALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARL 737
+ALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARL
Sbjct: 61 QALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARL 120
Query: 738 RMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKL 917
RMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKL
Sbjct: 121 RMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKL 180
Query: 918 VDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALE 1097
VDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALE
Sbjct: 181 VDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALE 240
Query: 1098 MGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMP 1277
MGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMP
Sbjct: 241 MGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMP 300
Query: 1278 LLEWFANNYKKFGATLEIVTDKSQEGIPFVKGFGGIGGILRYRVDSXGNGYQ 1433
LLEWFANNYKKFGATLEIVTDKSQEG FVKGFGGIGGILRYRVD G YQ
Sbjct: 301 LLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQ 352
Score = 23.5 bits (49), Expect(2) = e-160
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 1412 FXGXWIPGXDDEFFDL 1459
F G G DDEFFDL
Sbjct: 346 FQGMEYQGGDDEFFDL 361
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,332,539
Number of extensions: 878658
Number of successful extensions: 2780
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2769
Number of HSP's successfully gapped: 3
Length of query: 526
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 422
Effective length of database: 8,754,644
Effective search space: 3694459768
Effective search space used: 3694459768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007475
(1578 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 381 e-103
Sscrofa_Chr15 278 9e-72
Sscrofa_Chr01 109 5e-21
>Sscrofa_Chr02
|| Length = 162569375
Score = 381 bits (192), Expect = e-103
Identities = 192/192 (100%)
Strand = Plus / Minus
Query: 699 ggtagaggaggtcagtcagccttgcgctttgcccgcttaagaatggaaaagcgacataac 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146192690 ggtagaggaggtcagtcagccttgcgctttgcccgcttaagaatggaaaagcgacataac 146192631
Query: 759 tatgttcggaaagtagctgagactgctgtgcagctgtttatttctggggacaaagtgaat 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146192630 tatgttcggaaagtagctgagactgctgtgcagctgtttatttctggggacaaagtgaat 146192571
Query: 819 gtggctggtctcgttttagctggatcagctgactttaaaactgaactaagtcaatctgat 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146192570 gtggctggtctcgttttagctggatcagctgactttaaaactgaactaagtcaatctgat 146192511
Query: 879 atgtttgatcag 890
||||||||||||
Sbjct: 146192510 atgtttgatcag 146192499
Score = 351 bits (177), Expect = 7e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 244 gcaatggcacaagcatgatatcactgatcattcctcccaaagaccagatttcacgagtgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146197661 gcaatggcacaagcatgatatcactgatcattcctcccaaagaccagatttcacgagtgg 146197602
Query: 304 caaaaatgttagcagatgagtttggaactgcatctaacattaagtcacgagtaaaccgcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146197601 caaaaatgttagcagatgagtttggaactgcatctaacattaagtcacgagtaaaccgcc 146197542
Query: 364 tttcagtcctgggagccattacatctgtacaacaaagactcaaactttataacaaag 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146197541 tttcagtcctgggagccattacatctgtacaacaaagactcaaactttataacaaag 146197485
Score = 313 bits (158), Expect = 2e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 1019 agggcgatacttcgatgaaatcagccaagacacgggcaagtactgttttggagttgaaga 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146190712 agggcgatacttcgatgaaatcagccaagacacgggcaagtactgttttggagttgaaga 146190653
Query: 1079 tacactaaaggctttagaaatgggagctgtagagattctaatagtctatgaaaacctgga 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146190652 tacactaaaggctttagaaatgggagctgtagagattctaatagtctatgaaaacctgga 146190593
Query: 1139 tataatgagatatgttcttcattgccaaggcacagaag 1176
||||||||||||||||||||||||||||||||||||||
Sbjct: 146190592 tataatgagatatgttcttcattgccaaggcacagaag 146190555
Score = 285 bits (144), Expect = 4e-74
Identities = 144/144 (100%)
Strand = Plus / Minus
Query: 559 aggctcttacagcactactttcagatgatagcaagtttggcttcattgtaatagatggta 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146193158 aggctcttacagcactactttcagatgatagcaagtttggcttcattgtaatagatggta 146193099
Query: 619 gtggtgcactttttggcacactccaaggaaatacaagagaagtcctgcacaaattcactg 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146193098 gtggtgcactttttggcacactccaaggaaatacaagagaagtcctgcacaaattcactg 146193039
Query: 679 tggatctcccaaagaaacatggta 702
||||||||||||||||||||||||
Sbjct: 146193038 tggatctcccaaagaaacatggta 146193015
Score = 283 bits (143), Expect = 1e-73
Identities = 143/143 (100%)
Strand = Plus / Minus
Query: 419 agtacctccaaatggcctggttgtttactgtggtacaattgtaacagaagaaggaaagga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146196839 agtacctccaaatggcctggttgtttactgtggtacaattgtaacagaagaaggaaagga 146196780
Query: 479 aaagaaagtcaacattgactttgaacctttcaaaccaattaatacatcattgtatttgtg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146196779 aaagaaagtcaacattgactttgaacctttcaaaccaattaatacatcattgtatttgtg 146196720
Query: 539 tgacaacaaattccatacagagg 561
|||||||||||||||||||||||
Sbjct: 146196719 tgacaacaaattccatacagagg 146196697
Score = 280 bits (141), Expect = 2e-72
Identities = 141/141 (100%)
Strand = Plus / Minus
Query: 1 gatgtcacaggccccatgtgagcggattgcaacacatgcagctgcctggagagagggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146219180 gatgtcacaggccccatgtgagcggattgcaacacatgcagctgcctggagagagggagc 146219121
Query: 61 cggtgtcctacgtcagagccgccgccgcggagccgccgccggggaggagcagcagctgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146219120 cggtgtcctacgtcagagccgccgccgcggagccgccgccggggaggagcagcagctgcc 146219061
Query: 121 gcccaggactgggcccttagg 141
|||||||||||||||||||||
Sbjct: 146219060 gcccaggactgggcccttagg 146219040
Score = 272 bits (137), Expect = 5e-70
Identities = 151/153 (98%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 1240 agacaggacaagaacatgagctgattgagagcatgcccctgctggaatggtttgctaaca 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146189307 agacaggacaagaacatgagctgattgagagcatgcccctgctggaatggtttgctaaca 146189248
Query: 1300 attataaaaaatttggagctacgttggaaattgtcacagataagtcacaagaagggatcc 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 146189247 attataaaaaatttggagctacgttggaaattgtcacagataagtcacaagaagg-atcc 146189189
Query: 1360 ca-tttgtgaaaggatttggtggaattggaggt 1391
|| ||||||||||||||||||||||||||||||
Sbjct: 146189188 caatttgtgaaaggatttggtggaattggaggt 146189156
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 886 atcagaggttgcaatcaaaagttttaaaattagttgatatatcctatggtggtgaaaacg 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146191365 atcagaggttgcaatcaaaagttttaaaattagttgatatatcctatggtggtgaaaacg 146191306
Query: 946 gattcaaccaagctattgagttatctactgaagtcctctccaacgtgaagttcattcaag 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146191305 gattcaaccaagctattgagttatctactgaagtcctctccaacgtgaagttcattcaag 146191246
Query: 1006 agaagaaattaatagg 1021
||||||||||||||||
Sbjct: 146191245 agaagaaattaatagg 146191230
Score = 212 bits (107), Expect = 4e-52
Identities = 107/107 (100%)
Strand = Plus / Minus
Query: 138 tagggaggaggaggcgagaagatggcggacgaccccagtgctgccgacaggaacgtggag 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146218883 tagggaggaggaggcgagaagatggcggacgaccccagtgctgccgacaggaacgtggag 146218824
Query: 198 atctggaagatcaaaaagctcattaagagcttggaggcggcccgcgg 244
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146218823 atctggaagatcaaaaagctcattaagagcttggaggcggcccgcgg 146218777
Score = 155 bits (78), Expect = 9e-35
Identities = 146/163 (89%), Gaps = 7/163 (4%)
Strand = Plus / Minus
Query: 1388 aggtatcttgcggtaccgagtagattccnagggnaatggatacca-ggangagatgatga 1446
|||||||||||||||||||||||||| | |||| | | |||||| ||| ||||||||||
Sbjct: 146188891 aggtatcttgcggtaccgagtagatttccagggaatggaataccaaggaggagatgatga 146188832
Query: 1447 attttttgacct-gatgactactangtagtcgacatgggtccggc-aaacgtgcctcacc 1504
|||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 146188831 attttttgaccttgatgactactaggtagtcgacatgggtccggcaaaacgtgcctcacc 146188772
Query: 1505 ct-cagcatcca--ccnangagcatacccgt-gtggaatccaa 1543
|| ||||||||| || | |||||||||||| |||||||||||
Sbjct: 146188771 ctccagcatccaacccaaggagcatacccgtggtggaatccaa 146188729
Score = 133 bits (67), Expect = 3e-28
Identities = 67/67 (100%)
Strand = Plus / Minus
Query: 1175 agaggagaaaattctctatctaactccagaacaagagaaggataaatctcattttacaga 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146190117 agaggagaaaattctctatctaactccagaacaagagaaggataaatctcattttacaga 146190058
Query: 1235 caaagag 1241
|||||||
Sbjct: 146190057 caaagag 146190051
>Sscrofa_Chr15
|| Length = 157681621
Score = 278 bits (140), Expect = 9e-72
Identities = 419/509 (82%), Gaps = 26/509 (5%)
Strand = Plus / Plus
Query: 195 gagatctggaagatcaaaaagctcattaagagcttggaggcggcccgcggcaatggcaca 254
|||| ||||||||| || ||||||||||||||| | ||| ||||||| |||| ||||
Sbjct: 112315064 gagagctggaagatgaagaagctcattaagagccagcaggtggcccgcagcaaaggcaag 112315123
Query: 255 agcatgatatcactgatcattcctcccaaagaccagatttcacgagtggcaaaaatgtta 314
| |||||||||| |||||||||||||| |||||||| ||||| || ||||||||||||
Sbjct: 112315124 aacatgatatcattgatcattcctccccaagaccaggtttcatgaatggcaaaaatgtc- 112315182
Query: 315 gcagatgagtttggaactgcatctaacattaagtcacgagtaaaccgcctttcagtcctg 374
||||| ||||| |||||||||| || || ||| | ||||||||||||
Sbjct: 112315183 -----------tggaagtgcattcaacattaagttactagcaaagcaactttcagtcctg 112315231
Query: 375 ggagccattacatctgtacaacaaagactcaaactttataacaaagtacctccaaatggc 434
||| ||||||||||||||||||||||||||| |||||||| ||||||||||| | |
Sbjct: 112315232 ggaatcattacatctgtacaacaaagactcaagctttataa---agtacctccaagggac 112315288
Query: 435 ctggttgtttactgtggtacaattgtaacagaagaaggaaaggaaaagaaagtcaacatt 494
||| | |||||||| |||||| ||||||||||| ||||||||||| || || |||||
Sbjct: 112315289 ctgctagtttactgcagtacaactgtaacagaag---gaaaggaaaagcaaatcgacatt 112315345
Query: 495 gactttgaacctttcaaaccaattaatacatcattgtatttgtgtgacaacaaattccat 554
|||| ||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct: 112315346 ----ttga--ctttcaaactagttaatttgtcattatatttgtgtgacaacaaattccat 112315399
Query: 555 acagaggctcttacagcactactttcagatgatagcaagtttggcttcattgtaatagat 614
| | ||||||| |||||||| ||| || | |||||| ||||||||||||||| |||
Sbjct: 112315400 aaaaaggctctcacagcactgcttctggagggaagcaag-ttggcttcattgtaagagaa 112315458
Query: 615 ggtagtggtgcactttttggcacactccaaggaaatacaagagaagtcctgcacaaattc 674
|||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 112315459 ggtagtggtg-actttctggcacactccaaggaaatacaagaaaagtcctgcacaagttc 112315517
Query: 675 actgtggatctcccaaagaaacatggtag 703
|||||||||||||| |||||||| |||||
Sbjct: 112315518 actgtggatctccccaagaaacaaggtag 112315546
Score = 133 bits (67), Expect = 3e-28
Identities = 106/119 (89%)
Strand = Plus / Plus
Query: 920 tgatatatcctatggtggtgaaaacggattcaaccaagctattgagttatctactgaagt 979
|||| |||| ||||||| | |||| |||||||| |||||||||||| |||||| ||||||
Sbjct: 112315851 tgatgtatcttatggtgataaaaatggattcaagcaagctattgagatatctattgaagt 112315910
Query: 980 cctctccaacgtgaagttcattcaagagaagaaattaatagggcgatacttcgatgaaa 1038
|||| ||||||||||||||||| || |||||||||||| |||||||||||| |||||||
Sbjct: 112315911 cctcaccaacgtgaagttcatttaaaagaagaaattaacagggcgatacttggatgaaa 112315969
Score = 65.9 bits (33), Expect = 6e-08
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 1150 atgttcttcattgccaaggcacagaagaggagaaaattctctatc 1194
|||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 112315983 atgtccttcattgccacagcacagaagaggagaaaattctctatc 112316027
>Sscrofa_Chr01
|| Length = 315321322
Score = 109 bits (55), Expect = 5e-21
Identities = 124/143 (86%), Gaps = 4/143 (2%)
Strand = Plus / Minus
Query: 1354 ggatccca-tttgtgaaaggatttggtggaattggaggtatcttgcggtaccgagtagat 1412
|||||||| ||||||||||||||||||| || ||||||||||| | || || ||||||||
Sbjct: 136799475 ggatcccagtttgtgaaaggatttggtgaaactggaggtatct-gtggaacagagtagat 136799417
Query: 1413 tccnagggnaatggatacca-ggangagatgatgaattttttgacct-gatgactactan 1470
| | |||| | | |||||| ||| |||||||||||||| ||||| | |||||||||||
Sbjct: 136799416 ttccagggaatggaataccaaggaggagatgatgaatttgttgactttgatgactactag 136799357
Query: 1471 gtagtcgacatgggtccggcaaa 1493
|||||||||||||||||||||||
Sbjct: 136799356 gtagtcgacatgggtccggcaaa 136799334
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 49,164,897
Number of extensions: 904
Number of successful extensions: 904
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 17
Length of query: 1578
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1556
Effective length of database: 2,808,408,574
Effective search space: 4369883741144
Effective search space used: 4369883741144
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)