Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007479
(1121 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070269.1| BRISC and BRCA1-A complex member 1 [Bos taur... 617 e-177
>ref|NP_001070269.1| BRISC and BRCA1-A complex member 1 [Bos taurus].
Length = 332
Score = 617 bits (1591), Expect = e-177
Identities = 301/320 (94%), Positives = 304/320 (95%)
Frame = +1
Query: 160 MEVVEPSSPTXXXXXXXXXXXQSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEGEAAS 339
MEV EPS PT QSAEPRPRTRSNPEGAEDRALGAQ SVGSRSEGEGEAAS
Sbjct: 1 MEVAEPSCPTEEEEEEEEEEEQSAEPRPRTRSNPEGAEDRALGAQTSVGSRSEGEGEAAS 60
Query: 340 ADDGTLNPPGAGPKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK 519
ADDGT NPPGAGPKPWQVPPP PEVQVRTPRVNCPEKVIICLDLSEEM+LPKLESFNGSK
Sbjct: 61 ADDGTANPPGAGPKPWQVPPPAPEVQVRTPRVNCPEKVIICLDLSEEMALPKLESFNGSK 120
Query: 520 TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS 699
TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS
Sbjct: 121 TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS 180
Query: 700 CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ 879
CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ
Sbjct: 181 CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ 240
Query: 880 CPYFFFDVVYIHNGAEKKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK 1059
CPYFFFDVVYIHNGA++KEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK
Sbjct: 241 CPYFFFDVVYIHNGADEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK 300
Query: 1060 LLAHPLQRPCQSHASYSLLE 1119
LLAHPLQRPCQSHASYSLLE
Sbjct: 301 LLAHPLQRPCQSHASYSLLE 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 48,058,171
Number of extensions: 1566359
Number of successful extensions: 9447
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9268
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,240,222
Effective search space: 3830619718
Effective search space used: 3830619718
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007479
(1121 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533881.2| PREDICTED: hypothetical protein XP_533881 [Cani... 605 e-173
>ref|XP_533881.2| PREDICTED: hypothetical protein XP_533881 [Canis familiaris].
Length = 336
Score = 605 bits (1561), Expect = e-173
Identities = 300/324 (92%), Positives = 303/324 (93%), Gaps = 4/324 (1%)
Frame = +1
Query: 160 MEVVEPSSPTXXXXXXXXXXX----QSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEG 327
MEV EP+SPT QSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEG
Sbjct: 1 MEVAEPNSPTEEEEEEEEEEEEEEEQSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEG 60
Query: 328 EAASADDGTLNPPGAGPKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESF 507
EAASADDGT NPPGAGPKPWQVPP PEVQVRTPRVNCPEKVIICLDLSEEMSL KLESF
Sbjct: 61 EAASADDGTPNPPGAGPKPWQVPPTAPEVQVRTPRVNCPEKVIICLDLSEEMSLSKLESF 120
Query: 508 NGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDL 687
NGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDD AWLSGLTSDPRELCSCLYDL
Sbjct: 121 NGSKTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDIAWLSGLTSDPRELCSCLYDL 180
Query: 688 ETASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMK 867
ETASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMK
Sbjct: 181 ETASCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMK 240
Query: 868 KMFQCPYFFFDVVYIHNGAEKKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHN 1047
KMFQCPYFFFDVVYIHNGA++KEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHN
Sbjct: 241 KMFQCPYFFFDVVYIHNGADEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHN 300
Query: 1048 CMAKLLAHPLQRPCQSHASYSLLE 1119
CMAKLLAHPLQRPCQSHASYSLLE
Sbjct: 301 CMAKLLAHPLQRPCQSHASYSLLE 324
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,123,046
Number of extensions: 1589024
Number of successful extensions: 9776
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9576
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 269
Effective length of database: 15,407,560
Effective search space: 4144633640
Effective search space used: 4144633640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007479
(1121 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028721.1| BRISC and BRCA1-A complex member 1 [Homo sap... 605 e-173
Alignment gi|NP_054892.2| BRISC and BRCA1-A complex member 1 [Homo sapien... 605 e-173
>ref|NP_001028721.1| BRISC and BRCA1-A complex member 1 [Homo sapiens].
Length = 329
Score = 605 bits (1559), Expect = e-173
Identities = 298/320 (93%), Positives = 302/320 (94%)
Frame = +1
Query: 160 MEVVEPSSPTXXXXXXXXXXXQSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEGEAAS 339
MEV EPSSPT SAEPRPRTRSNPEGAEDRA+GAQASVGSRSEGEGEAAS
Sbjct: 1 MEVAEPSSPTEEEEEEEE---HSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAAS 57
Query: 340 ADDGTLNPPGAGPKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK 519
ADDG+LN GAGPK WQVPPP PEVQ+RTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK
Sbjct: 58 ADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK 117
Query: 520 TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS 699
TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS
Sbjct: 118 TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS 177
Query: 700 CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ 879
CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ
Sbjct: 178 CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ 237
Query: 880 CPYFFFDVVYIHNGAEKKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK 1059
CPYFFFDVVYIHNG E+KEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK
Sbjct: 238 CPYFFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK 297
Query: 1060 LLAHPLQRPCQSHASYSLLE 1119
LLAHPLQRPCQSHASYSLLE
Sbjct: 298 LLAHPLQRPCQSHASYSLLE 317
>ref|NP_054892.2| BRISC and BRCA1-A complex member 1 [Homo sapiens].
Length = 329
Score = 605 bits (1559), Expect = e-173
Identities = 298/320 (93%), Positives = 302/320 (94%)
Frame = +1
Query: 160 MEVVEPSSPTXXXXXXXXXXXQSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEGEAAS 339
MEV EPSSPT SAEPRPRTRSNPEGAEDRA+GAQASVGSRSEGEGEAAS
Sbjct: 1 MEVAEPSSPTEEEEEEEE---HSAEPRPRTRSNPEGAEDRAVGAQASVGSRSEGEGEAAS 57
Query: 340 ADDGTLNPPGAGPKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK 519
ADDG+LN GAGPK WQVPPP PEVQ+RTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK
Sbjct: 58 ADDGSLNTSGAGPKSWQVPPPAPEVQIRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSK 117
Query: 520 TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS 699
TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS
Sbjct: 118 TNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETAS 177
Query: 700 CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ 879
CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ
Sbjct: 178 CSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQ 237
Query: 880 CPYFFFDVVYIHNGAEKKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK 1059
CPYFFFDVVYIHNG E+KEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK
Sbjct: 238 CPYFFFDVVYIHNGTEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAK 297
Query: 1060 LLAHPLQRPCQSHASYSLLE 1119
LLAHPLQRPCQSHASYSLLE
Sbjct: 298 LLAHPLQRPCQSHASYSLLE 317
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,929,770
Number of extensions: 1545118
Number of successful extensions: 9057
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8872
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 269
Effective length of database: 14,868,908
Effective search space: 3999736252
Effective search space used: 3999736252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007479
(1121 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080912.2| BRISC and BRCA1-A complex member 1 [Mus musculu... 577 e-165
>ref|NP_080912.2| BRISC and BRCA1-A complex member 1 [Mus musculus].
Length = 333
Score = 577 bits (1488), Expect = e-165
Identities = 281/321 (87%), Positives = 296/321 (92%), Gaps = 1/321 (0%)
Frame = +1
Query: 160 MEVVEPSSPTXXXXXXXXXXXQS-AEPRPRTRSNPEGAEDRALGAQASVGSRSEGEGEAA 336
MEV E +SPT ++ +EPRP TRSNPEGAEDRALGAQASVGSRSEGEGEAA
Sbjct: 1 MEVAEANSPTEEEEEEEEEGEETISEPRPHTRSNPEGAEDRALGAQASVGSRSEGEGEAA 60
Query: 337 SADDGTLNPPGAGPKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGS 516
+AD G + PGAGPKPWQVP EVQ+RTPRVNCPEKVIICLDLSEEMS+PKLESFNGS
Sbjct: 61 TADGGAASVPGAGPKPWQVPASASEVQIRTPRVNCPEKVIICLDLSEEMSVPKLESFNGS 120
Query: 517 KTNALNVSQKMIEMFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETA 696
+TNALNVSQKM+EMFVRTKHKIDKSHEFALVVVNDD+AWLSGLTSDPRELCSCLYDLETA
Sbjct: 121 RTNALNVSQKMVEMFVRTKHKIDKSHEFALVVVNDDSAWLSGLTSDPRELCSCLYDLETA 180
Query: 697 SCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMF 876
SCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMF
Sbjct: 181 SCSTFNLEGLFSLIQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMF 240
Query: 877 QCPYFFFDVVYIHNGAEKKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMA 1056
QCPYFFFD+VYIHNG E+KEE+MSWKDMFAFMGSLDTKG SYKYEVALAGPALELHNCMA
Sbjct: 241 QCPYFFFDIVYIHNGTEEKEEDMSWKDMFAFMGSLDTKGASYKYEVALAGPALELHNCMA 300
Query: 1057 KLLAHPLQRPCQSHASYSLLE 1119
KLLAHPLQRPCQ+HASYSLLE
Sbjct: 301 KLLAHPLQRPCQTHASYSLLE 321
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,013,999
Number of extensions: 1267880
Number of successful extensions: 6982
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6824
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 270
Effective length of database: 12,523,851
Effective search space: 3381439770
Effective search space used: 3381439770
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007479
(1121 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360720.1| PREDICTED: BRISC and BRCA1-A complex member ... 709 0.0
>ref|XP_003360720.1| PREDICTED: BRISC and BRCA1-A complex member 1-like [Sus scrofa].
Length = 415
Score = 709 bits (1831), Expect = 0.0
Identities = 348/368 (94%), Positives = 349/368 (94%)
Frame = +1
Query: 16 RCGGRAIPLPAAKDGGFLASRQPGWKEVQATGRILASPIPTPSSHSGAMEVVEPSSPTXX 195
RCGGRAIPLPAAKDGGFLASRQPGWKEVQATGRILASPIPTPSSHSGAMEVVEPSSPT
Sbjct: 36 RCGGRAIPLPAAKDGGFLASRQPGWKEVQATGRILASPIPTPSSHSGAMEVVEPSSPTEE 95
Query: 196 XXXXXXXXXQSAEPRPRTRSNPEGAEDRALGAQASVGSRSEGEGEAASADDGTLNPPGAG 375
QSAEPRPRTRSNPEGAEDRALGA EGEGEAASADDGTLNPPGAG
Sbjct: 96 EEEEEEEEEQSAEPRPRTRSNPEGAEDRALGAXXXXXXXXEGEGEAASADDGTLNPPGAG 155
Query: 376 PKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIE 555
PKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIE
Sbjct: 156 PKPWQVPPPTPEVQVRTPRVNCPEKVIICLDLSEEMSLPKLESFNGSKTNALNVSQKMIE 215
Query: 556 MFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFSL 735
MFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFSL
Sbjct: 216 MFVRTKHKIDKSHEFALVVVNDDTAWLSGLTSDPRELCSCLYDLETASCSTFNLEGLFSL 275
Query: 736 IQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIH 915
IQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIH
Sbjct: 276 IQQKTELPVTENVQTIPPPYVVRTILVYSRPPCQPQFSLTEPMKKMFQCPYFFFDVVYIH 335
Query: 916 NGAEKKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQS 1095
NGAE+KEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQS
Sbjct: 336 NGAEEKEEEMSWKDMFAFMGSLDTKGTSYKYEVALAGPALELHNCMAKLLAHPLQRPCQS 395
Query: 1096 HASYSLLE 1119
HASYSLLE
Sbjct: 396 HASYSLLE 403
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,369,784
Number of extensions: 1051343
Number of successful extensions: 6105
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5960
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 273
Effective length of database: 8,854,232
Effective search space: 2417205336
Effective search space used: 2417205336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007479
(1121 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892606.2| Sus scrofa unplaced genomic scaffold ChrUScaf492 335 3e-89
Sscrofa_Chr13 103 2e-19
>gb|GL892606.2| Sus scrofa unplaced genomic scaffold ChrUScaf492
Length = 49966
Score = 335 bits (169), Expect = 3e-89
Identities = 169/169 (100%)
Strand = Plus / Minus
Query: 953 aggacatgtttgccttcatgggcagcctggataccaagggtaccagctataagtatgagg 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10725 aggacatgtttgccttcatgggcagcctggataccaagggtaccagctataagtatgagg 10666
Query: 1013 tggcgctggctgggccagcccttgagctgcacaactgtatggccaaactgctggctcacc 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10665 tggcgctggctgggccagcccttgagctgcacaactgtatggccaaactgctggctcacc 10606
Query: 1073 cactgcagcggccttgccaaagccatgcctcctacagcctgctggagga 1121
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10605 cactgcagcggccttgccaaagccatgcctcctacagcctgctggagga 10557
Score = 266 bits (134), Expect = 2e-68
Identities = 137/138 (99%)
Strand = Plus / Minus
Query: 316 gagggtgaaggtgaagcagccagtgctgatgatgggaccctcaaccccccaggagccggc 375
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17561 gagggagaaggtgaagcagccagtgctgatgatgggaccctcaaccccccaggagccggc 17502
Query: 376 cccaagccctggcaggtgcctccaccaaccccggaggtccaggtacggacgccaagggtc 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17501 cccaagccctggcaggtgcctccaccaaccccggaggtccaggtacggacgccaagggtc 17442
Query: 436 aactgtccagagaaagtg 453
||||||||||||||||||
Sbjct: 17441 aactgtccagagaaagtg 17424
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 738 ccagcagaagacggagctgccagtcacagagaacgtgcagacgattccaccaccatacgt 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12145 ccagcagaagacggagctgccagtcacagagaacgtgcagacgattccaccaccatacgt 12086
Query: 798 ggtccgcaccatcctcgtctatagccgtccaccctgccagccccagttctctctgacgga 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12085 ggtccgcaccatcctcgtctatagccgtccaccctgccagccccagttctctctgacgga 12026
Query: 858 gcccatgaag 867
||||||||||
Sbjct: 12025 gcccatgaag 12016
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 512 gctccaaaaccaatgccctcaacgtctcccagaaaatgattgaaatgtttgtgcggacaa 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15441 gctccaaaaccaatgccctcaacgtctcccagaaaatgattgaaatgtttgtgcggacaa 15382
Query: 572 aacacaagatcgacaagagccatgaattcgcattggtcgtggtgaatgacgacaccgcct 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15381 aacacaagatcgacaagagccatgaattcgcattggtcgtggtgaatgacgacaccgcct 15322
Query: 632 gg 633
||
Sbjct: 15321 gg 15320
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 4 acatttcccaggagatgtggcggccgcgccataccacttccggctgctaaagatggcggc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18827 acatttcccaggagatgtggcggccgcgccataccacttccggctgctaaagatggcggc 18768
Query: 64 ttcctagcgagtcgacagccgggttggaaggaggttcaggctacgg 109
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18767 ttcctagcgagtcgacagccgggttggaaggaggttcaggctacgg 18722
Score = 170 bits (86), Expect = 1e-39
Identities = 89/90 (98%)
Strand = Plus / Minus
Query: 866 agaaaatgttccagtgcccgtatttcttcttcgatgttgtctacatccacaatggcgccg 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11649 agaaaatgttccagtgcccgtatttcttcttcgatgttgtctacatccacaatggcgccg 11590
Query: 926 aaaagaaggaggaggagatgagctggaagg 955
|| |||||||||||||||||||||||||||
Sbjct: 11589 aagagaaggaggaggagatgagctggaagg 11560
Score = 163 bits (82), Expect = 3e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 108 gggaagaatcctggcttctcccatccctactccatctagccactcaggagccatggaggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17847 gggaagaatcctggcttctcccatccctactccatctagccactcaggagccatggaggt 17788
Query: 168 ggtggagcccagcagtcccact 189
||||||||||||||||||||||
Sbjct: 17787 ggtggagcccagcagtcccact 17766
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 633 gctgtccggcctgacctctgacccccgtgaactctgcagctgcctctatgacctggagac 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15238 gctgtccggcctgacctctgacccccgtgaactctgcagctgcctctatgacctggagac 15179
Query: 693 ggcctcctgctccaccttca 712
||||||||||||||||||||
Sbjct: 15178 ggcctcctgctccaccttca 15159
Score = 139 bits (70), Expect = 4e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 223 cagtctgctgagcccaggccccgcactcgctccaaccctgagggggctgaggaccgggca 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17732 cagtctgctgagcccaggccccgcactcgctccaaccctgagggggctgaggaccgggca 17673
Query: 283 ctgggggccc 292
||||||||||
Sbjct: 17672 ctgggggccc 17663
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 453 gatcatctgcctggacctgtcggaggaaatgtcgttgccaaagctggagtcattcaatgg 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16117 gatcatctgcctggacctgtcggaggaaatgtcgttgccaaagctggagtcattcaatgg 16058
>Sscrofa_Chr13
|| Length = 218635234
Score = 103 bits (52), Expect = 2e-19
Identities = 112/130 (86%), Gaps = 4/130 (3%)
Strand = Plus / Plus
Query: 373 ggccccaagccctggcaggtgcctccaccaaccccggaggtccaggtacggacgccaagg 432
||||||||||||||||||||||| |||||| |||| ||||||||||| | | |||||||
Sbjct: 15783252 ggccccaagccctggcaggtgcccccaccacccccacaggtccaggtaagaatgccaagg 15783311
Query: 433 gtcaactgtccagagaaagtgatcatctgcctggacctgtcggaggaaatgtcgttgcca 492
|||| |||||| |||| | | ||||||||||||||||| | ||||||||||| ||| |
Sbjct: 15783312 gtcagctgtcc--agaaggaggtcatctgcctggacctgac--aggaaatgtcgctgcta 15783367
Query: 493 aagctggagt 502
||||||||||
Sbjct: 15783368 aagctggagt 15783377
Score = 60.0 bits (30), Expect = 3e-06
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 932 aggaggaggagatgagctggaaggacatgtttgccttcatgggcagcctggataccaa 989
||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 15783934 aggaggaggaggagagctggaagg-catgtttgccttcatgcatagcctggataccaa 15783990
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,367,000
Number of extensions: 336
Number of successful extensions: 336
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 335
Number of HSP's successfully gapped: 12
Length of query: 1121
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1100
Effective length of database: 2,808,413,156
Effective search space: 3089254471600
Effective search space used: 3089254471600
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)