Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007481
(969 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776579.1| palmitoyl-protein thioesterase 1 precursor [Bos... 476 e-149
Alignment gi|NP_001030395.2| lysosomal thioesterase PPT2 precursor [Bos t... 68 1e-11
>ref|NP_776579.1| palmitoyl-protein thioesterase 1 precursor [Bos taurus].
Length = 306
Score = 476 bits (1225), Expect(2) = e-149
Identities = 226/244 (92%), Positives = 236/244 (96%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 265
FL GSC +LALGH+DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGI+VLSLEIG
Sbjct: 14 FLLGSCASLALGHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIHVLSLEIG 73
Query: 266 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 445
KTL EDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP PPM
Sbjct: 74 KTLREDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPM 133
Query: 446 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 625
+NLIS+GGQHQGVFG PRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPI+ED
Sbjct: 134 VNLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIRED 193
Query: 626 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 805
+YRNHSIFLADINQER +NESYKKNLMALKKFVMVKFLND+IVDPVDSEWFGFYRSGQAK
Sbjct: 194 IYRNHSIFLADINQERGVNESYKKNLMALKKFVMVKFLNDTIVDPVDSEWFGFYRSGQAK 253
Query: 806 KPFP 817
+ P
Sbjct: 254 ETIP 257
Score = 70.9 bits (172), Expect(2) = e-149
Identities = 35/54 (64%), Positives = 42/54 (77%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQESTLYTQDRLGL+ MDKAG+LVFL L+GDHL ++ F P L
Sbjct: 252 AKETIPLQESTLYTQDRLGLKAMDKAGQLVFLALEGDHLQLSEEWFYAHIIPFL 305
>ref|NP_001030395.2| lysosomal thioesterase PPT2 precursor [Bos taurus].
Length = 305
Score = 67.8 bits (164), Expect = 1e-11
Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 11/254 (4%)
Frame = +2
Query: 146 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPG--IYVLSLEIGKTLVEDVENSFFLNVNSQ 319
P+++ HG+ DS S + + + + PG + VL L G+ + + + V
Sbjct: 41 PVIVVHGLFDSS---YSFRHLLEYINETHPGTAVTVLDLFDGRESLRPL----WEQVQGF 93
Query: 320 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFGFPR 499
V I+AK QG + + +SQGG RA+ + + IS+ G +G
Sbjct: 94 REAVAPIMAK---ALQGVHLICYSQGGLVCRALLSVMDEHNVDSFISLSSPQMGQYG--- 147
Query: 500 CPGESSHICDFIRKTLNAGAYNKAIQ---ERLVQAEYWHDPIKEDVYRNHSIFLADINQE 670
+++++ ++ + Y + YWHDP +D+Y N S FLA IN E
Sbjct: 148 ---DTNYLKWLFPTSMRSNLYRICYSPWGQEFSICNYWHDPHHDDLYLNASSFLALINGE 204
Query: 671 RSINE--SYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQA----KKPFPYRRVP 832
R +++KN + L + V++ +D ++ P S +FGFY + + +K Y R
Sbjct: 205 RDHPNATAWRKNFLRLGRLVLIGGPDDGVITPWQSSFFGFYDANETVLEMEKQLVYLRDS 264
Query: 833 CTHRTVLG*GKWTR 874
+T+L G R
Sbjct: 265 FGLKTLLARGAIVR 278
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,042,804
Number of extensions: 1147742
Number of successful extensions: 3649
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3646
Number of HSP's successfully gapped: 3
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007481
(969 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001010944.1| palmitoyl-protein thioesterase 1 [Canis lupu... 457 e-129
Alignment gi|XP_532090.2| PREDICTED: similar to palmitoyl-protein thioest... 71 2e-12
>ref|NP_001010944.1| palmitoyl-protein thioesterase 1 [Canis lupus familiaris].
Length = 306
Score = 457 bits (1177), Expect(2) = e-129
Identities = 223/256 (87%), Positives = 232/256 (90%)
Frame = +2
Query: 89 LPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 268
LPGS A A +DP APLPLVIWHGMGDSCCNPLSMGAIKKMVE+KIPGIYVLSLEIGK
Sbjct: 15 LPGSGAARAPWRLDPAAPLPLVIWHGMGDSCCNPLSMGAIKKMVEEKIPGIYVLSLEIGK 74
Query: 269 TLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMI 448
TL+EDVENSFFLNVNSQVTTVCQILAKDPKL QGYNAMGFSQGGQFLRAVAQRCP PPMI
Sbjct: 75 TLMEDVENSFFLNVNSQVTTVCQILAKDPKLHQGYNAMGFSQGGQFLRAVAQRCPSPPMI 134
Query: 449 NLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDV 628
NLISIGGQHQGV+G PRCPGESSHICD IRKTLNAGAYNKAIQERLVQAEYWHDPIKED
Sbjct: 135 NLISIGGQHQGVYGLPRCPGESSHICDLIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDT 194
Query: 629 YRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKK 808
YRNHSIFLADINQER +NESYK+NLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK+
Sbjct: 195 YRNHSIFLADINQERGVNESYKRNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 254
Query: 809 PFPYRRVPCTHRTVLG 856
P + + LG
Sbjct: 255 TIPLQETALYTQDRLG 270
Score = 23.1 bits (48), Expect(2) = e-129
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 918 LPEKRFYAPIIPFLE 962
L ++ FYA IIPFLE
Sbjct: 292 LSQEWFYAHIIPFLE 306
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQE+ LYTQDRLGL+EMD AG+LVFL ++GDHL ++ F P L
Sbjct: 252 AKETIPLQETALYTQDRLGLKEMDNAGQLVFLAVEGDHLQLSQEWFYAHIIPFL 305
>ref|XP_532090.2| PREDICTED: similar to palmitoyl-protein thioesterase 2 isoform a
precursor [Canis familiaris].
Length = 303
Score = 70.9 bits (172), Expect = 2e-12
Identities = 69/260 (26%), Positives = 113/260 (43%), Gaps = 23/260 (8%)
Frame = +2
Query: 89 LPGSCLALALGHVDPPAP-----------LPLVIWHGMGDSCCNPLSMGAIKKMVEKKIP 235
LP + L L + PP P P+++ HG+ DS S + + + + P
Sbjct: 9 LPPVGILLLLPFLPPPLPPAAPAPHRAAYKPVIVVHGLFDSS---YSFRHLLEYINETHP 65
Query: 236 GIYVLSLEI--GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFL 409
G V L++ G+ + + + V V I+AK P QG + + +SQGG
Sbjct: 66 GTVVTVLDLFDGRESLRPL----WEQVQGFGEAVAPIMAKAP---QGVHLICYSQGGLVC 118
Query: 410 RAVAQRCPIPPMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYN 565
RA+ + + IS+ G +G FP +R L Y+
Sbjct: 119 RALLSVMDEHNVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYS 168
Query: 566 KAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINE--SYKKNLMALKKFVMVKFL 739
QE + YWHDP +D+Y N S FLA IN ER +++KN + + + V++
Sbjct: 169 PWGQEFSI-CNYWHDPHHDDLYLNASSFLALINGERDHPNATAWRKNFLRVGRLVLIGGP 227
Query: 740 NDSIVDPVDSEWFGFYRSGQ 799
+D ++ P S +FGFY + +
Sbjct: 228 DDGVITPWQSSFFGFYDANE 247
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,772,492
Number of extensions: 1181684
Number of successful extensions: 3891
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3888
Number of HSP's successfully gapped: 4
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007481
(969 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000301.1| palmitoyl-protein thioesterase 1 isoform 1 prec... 469 e-132
Alignment gi|NP_001136076.1| palmitoyl-protein thioesterase 1 isoform 2 p... 225 5e-59
Alignment gi|NP_001191032.1| lysosomal thioesterase PPT2 isoform a precur... 68 1e-11
Alignment gi|NP_005146.4| lysosomal thioesterase PPT2 isoform a precursor... 68 1e-11
Alignment gi|NP_619731.2| lysosomal thioesterase PPT2 isoform b precursor... 68 1e-11
>ref|NP_000301.1| palmitoyl-protein thioesterase 1 isoform 1 precursor [Homo
sapiens].
Length = 306
Score = 469 bits (1208), Expect = e-132
Identities = 226/256 (88%), Positives = 236/256 (92%)
Frame = +2
Query: 89 LPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 268
LP +C + AL H+DPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK
Sbjct: 15 LPWTCASRALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 74
Query: 269 TLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMI 448
TL+EDVENSFFLNVNSQVTTVCQ LAKDPKLQQGYNAMGFSQGGQFLRAVAQRCP PPMI
Sbjct: 75 TLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPSPPMI 134
Query: 449 NLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDV 628
NLIS+GGQHQGVFG PRCPGESSHICDFIRKTLNAGAY+K +QERLVQAEYWHDPIKEDV
Sbjct: 135 NLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLVQAEYWHDPIKEDV 194
Query: 629 YRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKK 808
YRNHSIFLADINQER INESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK+
Sbjct: 195 YRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKE 254
Query: 809 PFPYRRVPCTHRTVLG 856
P + + LG
Sbjct: 255 TIPLQETSLYTQDRLG 270
Score = 66.6 bits (161), Expect = 3e-11
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQE++LYTQDRLGL+EMD AG+LVFL +GDHL ++ F P L
Sbjct: 252 AKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 305
>ref|NP_001136076.1| palmitoyl-protein thioesterase 1 isoform 2 precursor [Homo
sapiens].
Length = 203
Score = 225 bits (573), Expect = 5e-59
Identities = 113/149 (75%), Positives = 121/149 (81%)
Frame = +2
Query: 410 RAVAQRCPIPPMINLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLV 589
RA+ P P+ +I G GVFG PRCPGESSHICDFIRKTLNAGAY+K +QERLV
Sbjct: 22 RALQHLDPPAPLPLVIWHG---MGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERLV 78
Query: 590 QAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDS 769
QAEYWHDPIKEDVYRNHSIFLADINQER INESYKKNLMALKKFVMVKFLNDSIVDPVDS
Sbjct: 79 QAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVDS 138
Query: 770 EWFGFYRSGQAKKPFPYRRVPCTHRTVLG 856
EWFGFYRSGQAK+ P + + LG
Sbjct: 139 EWFGFYRSGQAKETIPLQETSLYTQDRLG 167
Score = 66.6 bits (161), Expect = 3e-11
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQE++LYTQDRLGL+EMD AG+LVFL +GDHL ++ F P L
Sbjct: 149 AKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAHIIPFL 202
Score = 52.8 bits (125), Expect = 5e-07
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 15/63 (23%)
Frame = +2
Query: 89 LPGSCLALALGHVDPPAPLPLVIWHGMG---------------DSCCNPLSMGAIKKMVE 223
LP +C + AL H+DPPAPLPLVIWHGMG D L+ GA K+V+
Sbjct: 15 LPWTCASRALQHLDPPAPLPLVIWHGMGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQ 74
Query: 224 KKI 232
+++
Sbjct: 75 ERL 77
>ref|NP_001191032.1| lysosomal thioesterase PPT2 isoform a precursor [Homo sapiens].
Length = 302
Score = 67.8 bits (164), Expect = 1e-11
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 12/250 (4%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI- 262
FLP LA H + P+++ HG+ DS S + + + + PG V L++
Sbjct: 20 FLPLLLLAAPAPH--RASYKPVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLF 74
Query: 263 -GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIP 439
G+ + + + V V I+AK P QG + + +SQGG RA+
Sbjct: 75 DGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDH 127
Query: 440 PMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQA 595
+ + IS+ G +G FP +R L Y+ QE +
Sbjct: 128 NVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYSPWGQEFSI-C 176
Query: 596 EYWHDPIKEDVYRNHSIFLADINQERSINES--YKKNLMALKKFVMVKFLNDSIVDPVDS 769
YWHDP +D+Y N S FLA IN ER + ++KN + + V++ +D ++ P S
Sbjct: 177 NYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQS 236
Query: 770 EWFGFYRSGQ 799
+FGFY + +
Sbjct: 237 SFFGFYDANE 246
>ref|NP_005146.4| lysosomal thioesterase PPT2 isoform a precursor [Homo sapiens].
Length = 302
Score = 67.8 bits (164), Expect = 1e-11
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 12/250 (4%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI- 262
FLP LA H + P+++ HG+ DS S + + + + PG V L++
Sbjct: 20 FLPLLLLAAPAPH--RASYKPVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLF 74
Query: 263 -GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIP 439
G+ + + + V V I+AK P QG + + +SQGG RA+
Sbjct: 75 DGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDH 127
Query: 440 PMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQA 595
+ + IS+ G +G FP +R L Y+ QE +
Sbjct: 128 NVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYSPWGQEFSI-C 176
Query: 596 EYWHDPIKEDVYRNHSIFLADINQERSINES--YKKNLMALKKFVMVKFLNDSIVDPVDS 769
YWHDP +D+Y N S FLA IN ER + ++KN + + V++ +D ++ P S
Sbjct: 177 NYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQS 236
Query: 770 EWFGFYRSGQ 799
+FGFY + +
Sbjct: 237 SFFGFYDANE 246
>ref|NP_619731.2| lysosomal thioesterase PPT2 isoform b precursor [Homo sapiens].
Length = 308
Score = 67.8 bits (164), Expect = 1e-11
Identities = 68/250 (27%), Positives = 110/250 (44%), Gaps = 12/250 (4%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI- 262
FLP LA H + P+++ HG+ DS S + + + + PG V L++
Sbjct: 26 FLPLLLLAAPAPH--RASYKPVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLF 80
Query: 263 -GKTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIP 439
G+ + + + V V I+AK P QG + + +SQGG RA+
Sbjct: 81 DGRESLRPL----WEQVQGFREAVVPIMAKAP---QGVHLICYSQGGLVCRALLSVMDDH 133
Query: 440 PMINLISIGGQHQGVFG--------FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQA 595
+ + IS+ G +G FP +R L Y+ QE +
Sbjct: 134 NVDSFISLSSPQMGQYGDTDYLKWLFPTS----------MRSNLYRICYSPWGQEFSI-C 182
Query: 596 EYWHDPIKEDVYRNHSIFLADINQERSINES--YKKNLMALKKFVMVKFLNDSIVDPVDS 769
YWHDP +D+Y N S FLA IN ER + ++KN + + V++ +D ++ P S
Sbjct: 183 NYWHDPHHDDLYLNASSFLALINGERDHPNATVWRKNFLRVGHLVLIGGPDDGVITPWQS 242
Query: 770 EWFGFYRSGQ 799
+FGFY + +
Sbjct: 243 SFFGFYDANE 252
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,048,537
Number of extensions: 1165000
Number of successful extensions: 3498
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3492
Number of HSP's successfully gapped: 8
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007481
(969 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032943.2| palmitoyl-protein thioesterase 1 precursor [Mus... 441 e-138
Alignment gi|NP_062314.1| lysosomal thioesterase PPT2 precursor [Mus musc... 62 7e-10
Alignment gi|XP_003084636.1| PREDICTED: palmitoyl-protein thioesterase 1-... 51 2e-06
Alignment gi|XP_003086420.1| PREDICTED: palmitoyl-protein thioesterase 1-... 51 2e-06
>ref|NP_032943.2| palmitoyl-protein thioesterase 1 precursor [Mus musculus].
Length = 306
Score = 441 bits (1134), Expect(2) = e-138
Identities = 207/243 (85%), Positives = 223/243 (91%)
Frame = +2
Query: 89 LPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIGK 268
LP C A ALGH+DPP+P PLVIWHGMGDSCCNP+SMG IKKMVEK+IPGIYVLSLEIGK
Sbjct: 15 LPWCCAAWALGHLDPPSPPPLVIWHGMGDSCCNPMSMGVIKKMVEKEIPGIYVLSLEIGK 74
Query: 269 TLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMI 448
++EDVENSFFLNVN QV VCQIL KDPKLQQGYNA+GFSQGGQFLRAVAQRCP PPM+
Sbjct: 75 NMMEDVENSFFLNVNVQVNMVCQILEKDPKLQQGYNAIGFSQGGQFLRAVAQRCPTPPMM 134
Query: 449 NLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDV 628
LIS+GGQHQGVFG PRCPGESSHICDFIRK+LNAGAY+K +QERLVQA+YWHDPIKE V
Sbjct: 135 TLISVGGQHQGVFGLPRCPGESSHICDFIRKSLNAGAYSKLVQERLVQAQYWHDPIKESV 194
Query: 629 YRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAKK 808
YRN+SIFLADINQER +NESYKKNLMALKKFVMVKF NDSIVDPVDSEWFGFYRSGQAK+
Sbjct: 195 YRNYSIFLADINQERCVNESYKKNLMALKKFVMVKFFNDSIVDPVDSEWFGFYRSGQAKE 254
Query: 809 PFP 817
P
Sbjct: 255 TIP 257
Score = 70.1 bits (170), Expect(2) = e-138
Identities = 34/54 (62%), Positives = 42/54 (77%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQESTLYT+DRLGL++MDKAG+LVFL +GDHL K+ F P L
Sbjct: 252 AKETIPLQESTLYTEDRLGLKKMDKAGKLVFLAKEGDHLQISKEWFTAHIIPFL 305
>ref|NP_062314.1| lysosomal thioesterase PPT2 precursor [Mus musculus].
Length = 302
Score = 62.0 bits (149), Expect = 7e-10
Identities = 59/230 (25%), Positives = 101/230 (43%), Gaps = 12/230 (5%)
Frame = +2
Query: 146 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI--GKTLVEDVENSFFLNVNSQ 319
P+++ HG+ DS S + + + G V L++ G+ + + + V
Sbjct: 38 PVIVVHGLFDSS---YSFRHLLDYINETHTGTVVTVLDLFDGRESLRPL----WEQVQGF 90
Query: 320 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFG--- 490
V I+ K P +G + + +SQGG RA+ + + IS+ G +G
Sbjct: 91 REAVVPIMEKAP---EGVHLICYSQGGLVCRALLSVMDNHNVDSFISLSSPQMGQYGDTD 147
Query: 491 -----FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLA 655
FP +R L Y+ QE + YWHDP +D+Y N S FLA
Sbjct: 148 YLKWLFPTS----------MRSNLYRVCYSPWGQEFSI-CNYWHDPHHDDLYLNASSFLA 196
Query: 656 DINQERSINE--SYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQ 799
IN ER +++KN + + + V++ +D ++ P S +FGFY + +
Sbjct: 197 LINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANE 246
>ref|XP_003084636.1| PREDICTED: palmitoyl-protein thioesterase 1-like [Mus musculus].
Length = 116
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +2
Query: 101 CLALALGHVDPPA---PLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIP--GIYVLSLEIG 265
C A L +VDP + PLP+VIW + + + + K+ P G V SL+ G
Sbjct: 19 CDAKGLVYVDPDSESTPLPVVIWIDV------EIFVIMVSMTTSKETPKSGTDVESLQHG 72
Query: 266 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFL 409
++DVEN L+ SQ+ CQ LA+DPKLQ GY + + G Q L
Sbjct: 73 NNTMKDVENQV-LDACSQL---CQSLAQDPKLQHGYIIVAYFSGCQLL 116
>ref|XP_003086420.1| PREDICTED: palmitoyl-protein thioesterase 1-like [Mus musculus].
Length = 116
Score = 50.8 bits (120), Expect = 2e-06
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +2
Query: 101 CLALALGHVDPPA---PLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIP--GIYVLSLEIG 265
C A L +VDP + PLP+VIW + + + + K+ P G V SL+ G
Sbjct: 19 CDAKGLVYVDPDSESTPLPVVIWIDV------EIFVIMVSMTTSKETPKSGTDVESLQHG 72
Query: 266 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFL 409
++DVEN L+ SQ+ CQ LA+DPKLQ GY + + G Q L
Sbjct: 73 NNTMKDVENQV-LDACSQL---CQSLAQDPKLQHGYIIVAYFSGCQLL 116
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,762,243
Number of extensions: 976529
Number of successful extensions: 3099
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3092
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007481
(969 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003127871.1| PREDICTED: palmitoyl-protein thioesterase 1-... 498 e-158
Alignment gi|XP_003356379.1| PREDICTED: palmitoyl-protein thioesterase 1-... 499 e-156
Alignment gi|XP_003356377.1| PREDICTED: palmitoyl-protein thioesterase 1-... 234 1e-78
Alignment gi|NP_001116639.1| lysosomal thioesterase PPT2 [Sus scrofa]. 69 4e-12
>ref|XP_003127871.1| PREDICTED: palmitoyl-protein thioesterase 1-like isoform 1 [Sus
scrofa].
Length = 306
Score = 498 bits (1281), Expect(2) = e-158
Identities = 240/244 (98%), Positives = 242/244 (99%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 265
FLPGSCLALALGHVDPPAPLPLVIWHGMGD+CCNPLSMGAIKKMVEKKIPGIYVLSLEIG
Sbjct: 14 FLPGSCLALALGHVDPPAPLPLVIWHGMGDNCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 73
Query: 266 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 445
KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM
Sbjct: 74 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 133
Query: 446 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 625
INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED
Sbjct: 134 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 193
Query: 626 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 805
VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK
Sbjct: 194 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 253
Query: 806 KPFP 817
+ P
Sbjct: 254 ETIP 257
Score = 77.8 bits (190), Expect(2) = e-158
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQESTLYTQDRLGLREMDKAGRLVFLGL+GDHL ++ F P L
Sbjct: 252 AKETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFL 305
>ref|XP_003356379.1| PREDICTED: palmitoyl-protein thioesterase 1-like [Sus scrofa].
Length = 306
Score = 499 bits (1284), Expect(2) = e-156
Identities = 241/244 (98%), Positives = 242/244 (99%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 265
FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG
Sbjct: 14 FLPGSCLALALGHVDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEIG 73
Query: 266 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 445
KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM
Sbjct: 74 KTLVEDVENSFFLNVNSQVTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPM 133
Query: 446 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 625
INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED
Sbjct: 134 INLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKED 193
Query: 626 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 805
VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK
Sbjct: 194 VYRNHSIFLADINQERSINESYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQAK 253
Query: 806 KPFP 817
+ P
Sbjct: 254 ETIP 257
Score = 72.4 bits (176), Expect(2) = e-156
Identities = 37/54 (68%), Positives = 42/54 (77%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQESTLYTQDRLGLREMDKA RLVFL L+GDHL ++ F P L
Sbjct: 252 AKETIPLQESTLYTQDRLGLREMDKARRLVFLALEGDHLQLPEEWFYAHIIPFL 305
>ref|XP_003356377.1| PREDICTED: palmitoyl-protein thioesterase 1-like isoform 2 [Sus
scrofa].
Length = 203
Score = 234 bits (596), Expect(2) = 1e-78
Identities = 118/147 (80%), Positives = 123/147 (83%)
Frame = +2
Query: 377 AMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFGFPRCPGESSHICDFIRKTLNAG 556
A+ F G A+ P P+ +I G GVFGFPRCPGESSHICDFIRKTLNAG
Sbjct: 11 ALAFLPGSCLALALGHVDPPAPLPLVIWHG---MGVFGFPRCPGESSHICDFIRKTLNAG 67
Query: 557 AYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKF 736
AYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKF
Sbjct: 68 AYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLADINQERSINESYKKNLMALKKFVMVKF 127
Query: 737 LNDSIVDPVDSEWFGFYRSGQAKKPFP 817
LNDSIVDPVDSEWFGFYRSGQAK+ P
Sbjct: 128 LNDSIVDPVDSEWFGFYRSGQAKETIP 154
Score = 77.8 bits (190), Expect(2) = 1e-78
Identities = 39/54 (72%), Positives = 44/54 (81%)
Frame = +1
Query: 799 SQETIPLQESTLYTQDRLGLREMDKAGRLVFLGLKGDHLHCLKKGFMPPSYPSL 960
++ETIPLQESTLYTQDRLGLREMDKAGRLVFLGL+GDHL ++ F P L
Sbjct: 149 AKETIPLQESTLYTQDRLGLREMDKAGRLVFLGLEGDHLQLPEEWFYAHIIPFL 202
Score = 67.8 bits (164), Expect = 9e-12
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +2
Query: 86 FLPGSCLALALGHVDPPAPLPLVIWHGMG 172
FLPGSCLALALGHVDPPAPLPLVIWHGMG
Sbjct: 14 FLPGSCLALALGHVDPPAPLPLVIWHGMG 42
>ref|NP_001116639.1| lysosomal thioesterase PPT2 [Sus scrofa].
Length = 309
Score = 68.9 bits (167), Expect = 4e-12
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 12/230 (5%)
Frame = +2
Query: 146 PLVIWHGMGDSCCNPLSMGAIKKMVEKKIPGIYVLSLEI--GKTLVEDVENSFFLNVNSQ 319
P+++ HG+ DS S + + + + PG V L++ G+ + + + V
Sbjct: 45 PVIVVHGLFDSS---YSFRHLLEYINETHPGTVVTVLDLFDGRESLRPL----WEQVQGF 97
Query: 320 VTTVCQILAKDPKLQQGYNAMGFSQGGQFLRAVAQRCPIPPMINLISIGGQHQGVFG--- 490
V I+AK P QG + + +SQGG RA+ + + IS+ G +G
Sbjct: 98 REAVAPIMAKAP---QGVHLICYSQGGLVCRALLSVMDEHNVDSFISLSSPQMGQYGDTD 154
Query: 491 -----FPRCPGESSHICDFIRKTLNAGAYNKAIQERLVQAEYWHDPIKEDVYRNHSIFLA 655
FP +R L Y+ QE + YWHDP +D+Y N S FLA
Sbjct: 155 YLKWLFPTS----------MRSNLYRICYSPWGQEFSI-CNYWHDPHHDDLYLNASSFLA 203
Query: 656 DINQERSINE--SYKKNLMALKKFVMVKFLNDSIVDPVDSEWFGFYRSGQ 799
IN ER +++KN + + + V++ +D ++ P S +FGFY + +
Sbjct: 204 LINGERDHPNATAWRKNFLRVGRLVLIGGPDDGVITPWQSSFFGFYDANE 253
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,817,071
Number of extensions: 740675
Number of successful extensions: 2419
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2414
Number of HSP's successfully gapped: 8
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-007481
(969 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr06 339 2e-90
>Sscrofa_Chr06
|| Length = 157765593
Score = 339 bits (171), Expect = 2e-90
Identities = 171/171 (100%)
Strand = Plus / Plus
Query: 1 actccagatccgggcgaggaggggggcgatcatgtgatcgatcaagatggcgtcggccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89280513 actccagatccgggcgaggaggggggcgatcatgtgatcgatcaagatggcgtcggccag 89280572
Query: 61 ctccttgtggctcttggctcttgctttcctgccggggtcctgcttagccttggcgttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89280573 ctccttgtggctcttggctcttgctttcctgccggggtcctgcttagccttggcgttggg 89280632
Query: 121 gcatgtcgaccctccagcgccgctgccgctcgtgatctggcatgggatggg 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89280633 gcatgtcgaccctccagcgccgctgccgctcgtgatctggcatgggatggg 89280683
Score = 331 bits (167), Expect = 4e-88
Identities = 170/171 (99%)
Strand = Plus / Plus
Query: 1 actccagatccgggcgaggaggggggcgatcatgtgatcgatcaagatggcgtcggccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89101266 actccagatccgggcgaggaggggggcgatcatgtgatcgatcaagatggcgtcggccag 89101325
Query: 61 ctccttgtggctcttggctcttgctttcctgccggggtcctgcttagccttggcgttggg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 89101326 ctccttgtggctcttggctcttgctttcctgccgggatcctgcttagccttggcgttggg 89101385
Query: 121 gcatgtcgaccctccagcgccgctgccgctcgtgatctggcatgggatggg 171
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89101386 gcatgtcgaccctccagcgccgctgccgctcgtgatctggcatgggatggg 89101436
Score = 252 bits (127), Expect = 3e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 279 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109849 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 89109908
Query: 339 ttcttgctaaggatcctaagttacagcaaggctacaatgctatgggattctcccagggcg 398
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 89109909 ttcttgctaaggatcctaagttacaacaaggctacaatgctatgggattctcccagggcg 89109968
Query: 399 gccaatttctg 409
|||||||||||
Sbjct: 89109969 gccaatttctg 89109979
Score = 252 bits (127), Expect = 3e-64
Identities = 130/131 (99%)
Strand = Plus / Plus
Query: 279 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89287969 aggatgtggagaacagcttctttttgaatgtcaactcccaagtaacaacagtgtgtcaga 89288028
Query: 339 ttcttgctaaggatcctaagttacagcaaggctacaatgctatgggattctcccagggcg 398
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 89288029 ttcttgctaaggatcctaagttacaacaaggctacaatgctatgggattctcccagggcg 89288088
Query: 399 gccaatttctg 409
|||||||||||
Sbjct: 89288089 gccaatttctg 89288099
Score = 222 bits (112), Expect = 3e-55
Identities = 112/112 (100%)
Strand = Plus / Plus
Query: 170 ggagacagctgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109560 ggagacagctgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 89109619
Query: 230 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89109620 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 89109671
Score = 214 bits (108), Expect = 7e-53
Identities = 111/112 (99%)
Strand = Plus / Plus
Query: 170 ggagacagctgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 229
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89287680 ggagacaactgttgtaatcccttaagcatgggtgctattaagaaaatggtcgagaagaaa 89287739
Query: 230 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89287740 atacctggaatttacgtcttatctttagagattgggaagaccctggtagagg 89287791
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 478 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89113930 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 89113989
Query: 538 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 582
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89113990 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 89114034
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 478 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89292168 aggtgtttttggattccctcggtgcccaggagagagctctcacatctgtgactttatcag 89292227
Query: 538 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 582
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89292228 aaaaactctgaatgctggggcttacaacaaagctatacaagaacg 89292272
Score = 204 bits (103), Expect = 6e-50
Identities = 122/127 (96%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 841 caggaccgtcttgggctaagggaaatggacaaggcaggacggctggtgttccttggtcta 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89299082 caggaccgtcttgggctaagggaaatggacaaggcaggacggctggtgttccttggtcta 89299141
Query: 901 aaaggggaccatcttc-actgcctgaaaaaaggttttatgcccccatcatacccttcctt 959
||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||||
Sbjct: 89299142 gaaggggaccatcttcaactgcctgaagaatggttttatgcccacatcatacccttcctt 89299201
Query: 960 gagtgaa 966
|||||||
Sbjct: 89299202 gagtgaa 89299208
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 674 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89117105 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 89117164
Query: 734 tttctcaatgattccattgtggaccccgtagattctgag 772
|||||||||||||||||||||||||||||||||||||||
Sbjct: 89117165 tttctcaatgattccattgtggaccccgtagattctgag 89117203
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 674 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89295340 agtatcaacgagtcctacaagaagaacctgatggccctgaagaagtttgtgatggtgaaa 89295399
Query: 734 tttctcaatgattccattgtggaccccgtagattctgag 772
|||||||||||||||||||||||||||||||||||||||
Sbjct: 89295400 tttctcaatgattccattgtggaccccgtagattctgag 89295438
Score = 186 bits (94), Expect = 2e-44
Identities = 119/126 (94%), Gaps = 1/126 (0%)
Strand = Plus / Plus
Query: 841 caggaccgtcttgggctaagggaaatggacaaggcaggacggctggtgttccttggtcta 900
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct: 89120849 caggaccgtcttgggctaagggaaatggacaaggcacgacggctggtgttccttgctcta 89120908
Query: 901 aaaggggaccatcttc-actgcctgaaaaaaggttttatgcccccatcatacccttcctt 959
||||||||||||||| |||||||||| || |||||||||||| ||||||||||||||||
Sbjct: 89120909 gaaggggaccatcttcaactgcctgaagaatggttttatgcccacatcatacccttcctt 89120968
Query: 960 gagtga 965
||||||
Sbjct: 89120969 gagtga 89120974
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 582 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89115503 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 89115562
Query: 642 gcattttcctggcagatattaatcaggagaga 673
||||||||||||||||||||||||||||||||
Sbjct: 89115563 gcattttcctggcagatattaatcaggagaga 89115594
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 582 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89293741 gcctggtgcaagcggaatactggcatgaccccataaaggaggatgtttaccgcaaccaca 89293800
Query: 642 gcattttcctggcagatattaatcaggagaga 673
||||||||||||||||||||||||||||||||
Sbjct: 89293801 gcattttcctggcagatattaatcaggagaga 89293832
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 409 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89110558 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 89110617
Query: 469 acaacatcaaggt 481
|||||||||||||
Sbjct: 89110618 acaacatcaaggt 89110630
Score = 145 bits (73), Expect = 5e-32
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 409 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89288678 gagggcagtggctcagagatgccccatacctcccatgatcaatctcatctcaattggggg 89288737
Query: 469 acaacatcaaggt 481
|||||||||||||
Sbjct: 89288738 acaacatcaaggt 89288750
Score = 133 bits (67), Expect = 2e-28
Identities = 74/75 (98%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 771 agtggtttggattttacagaagtggccaagccaag-aaaccattcccttacaggagagta 829
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 89119261 agtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggagagta 89119320
Query: 830 ccctgtacacacagg 844
|||||||||||||||
Sbjct: 89119321 ccctgtacacacagg 89119335
Score = 133 bits (67), Expect = 2e-28
Identities = 74/75 (98%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 771 agtggtttggattttacagaagtggccaagccaag-aaaccattcccttacaggagagta 829
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 89297499 agtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggagagta 89297558
Query: 830 ccctgtacacacagg 844
|||||||||||||||
Sbjct: 89297559 ccctgtacacacagg 89297573
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,824,384
Number of extensions: 172
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 18
Length of query: 969
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 948
Effective length of database: 2,808,413,156
Effective search space: 2662375671888
Effective search space used: 2662375671888
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)